RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SREBF1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020538

Ensembl transcript IDs: ENSMUST00000020846.8, ENSMUST00000134660.8, ENSMUST00000144942.2

Found 349 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GAGCCAGGCCCAGCCGGATCTACACTATGTACAGGTCTCCCAGGGTaGGCCTCAGCTAGGGAAAAGCCACTAAGGTGCCTACAGAGCAAG +
Preference number: 1 (lower is better)
Translates to: EPGPAGSTLCTGLPG*ASAREKPLRCLQSK
Trigger: CTTGCTCTGTAGGCACCTTAGTGGCTTTTCCCTAGCTGAGGCTCACCCTGGGAGACCTGTACATAGTGTAGATCCGGCTGGGCCTGGCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
3UTR GCA 90 bp TCTGCAATTTCCAGATCTGCCACTAGAGGTCGGCATGGTCCTGATTaGTTGTCAGGCTCACCCTCTGGAAGACCACAGCCAATGACAAAG +
Preference number: 1 (lower is better)
Translates to: SAISRSATRGRHGPD*LSGSPSGRPQPMTK
Trigger: CTTTGTCATTGGCTGTGGTCTTCCAGAGGGTGAGCCTGACAAGCAATCAGGACCATGCCGACCTCTAGTGGCAGATCTGGAAATTGCAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
3UTR CCA 90 bp AAAGTCAATAAAGATACCACGATTGTTTTGGAAGTGTGCGGCCTGTaGATGCCGACCAGATTCCCTAAGGGGTTGGGAGTAGAGGGAAGG +
Preference number: 1 (lower is better)
Translates to: KVNKDTTIVLEVCGL*MPTRFPKGLGVEGR
Trigger: CCTTCCCTCTACTCCCAACCCCTTAGGGAATCTGGTCGGCATCCACAGGCCGCACACTTCCAAAACAATCGTGGTATCTTTATTGACTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
3UTR CCA 90 bp GCTCAACATAGCATCACCAAGCCAGCAAATACACCTTACAACAGATaGGAAGTCCGGCTTCCCAAAGGACAAGCCAGGAAAGATAGCAAT +
Preference number: 1 (lower is better)
Translates to: AQHSITKPANTPYNR*EVRLPKGQARKDSN
Trigger: ATTGCTATCTTTCCTGGCTTGTCCTTTGGGAAGCCGGACTTCCCATCTGTTGTAAGGTGTATTTGCTGGCTTGGTGATGCTATGTTGAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
3UTR TCA 90 bp AAGTCCGGCTTCCCAAAGGACAAGCCAGGAAAGATAGCAATCAGCTaGGGCAGACATCTGCCTACCCAGATAAACAAAACTGAAGTTATA +
Preference number: 1 (lower is better)
Translates to: KSGFPKDKPGKIAIS*GRHLPTQINKTEVI
Trigger: TATAACTTCAGTTTTGTTTATCTGGGTAGGCAGATGTCTGCCTCAGCTGATTGCTATCTTTCCTGGCTTGTCCTTTGGGAAGCCGGACTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
3UTR-3UTR CCA 90 bp CTGTGGATGCCGACCAGATTCCCTAAGGGGTTGGGAGTAGAGGGAAGGGGCCGGGTCAGGCTCACCCTCTaGAAGACCACAGCCAATGAC +
Preference number: 2 (lower is better)
Translates to: LWMPTRFPKGLGVEGRGRVRLTL*KTTAND
Trigger: GTCATTGGCTGTGGTCTTCCAGAGGGTGAGCCTGAC...CCGGCCCCTTCCCTCTACTCCCAACCCCTTAGGGAATCTGGTCGGCATCCACAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
3UTR-3UTR CCA 90 bp CTGTGGATGCCGACCAGATTCCCTAAGGGGTTGGGAGTAGAGGGAAGGGGCCGGAGTCAAAGTAGTACATaGGCCTGCCCTGGAGCCAGG +
Preference number: 2 (lower is better)
Translates to: LWMPTRFPKGLGVEGRGRSQSST*ACPGAR
Trigger: CCTGGCTCCAGGGCAGGCCCATGTACTACTTTGACT...CCGGCCCCTTCCCTCTACTCCCAACCCCTTAGGGAATCTGGTCGGCATCCACAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
3UTR-3UTR GCA 90 bp TTGTTTTGGAAGTGTGCGGCCTGTGGATGCCGACCAGATTCCCTAAGGGGTTGGAGTAGTACATGGGCCTaGCCTGGAGCCAGGCCCAGC +
Preference number: 2 (lower is better)
Translates to: LFWKCAACGCRPDSLRGWSSTWA*PGARPS
Trigger: GCTGGGCCTGGCTCCAGGGCAGGCCCATGTACTACT...CCAACCCCTTAGGGAATCTGGTCGGCATCCACAGGCCGCACACTTCCAAAACAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
3UTR-3UTR CCA 90 bp CTGTGGATGCCGACCAGATTCCCTAAGGGGTTGGGAGTAGAGGGAAGGGGCCGGTACCTGGTGGAGGGCTaGAAGGCAAAGGAACAACTG +
Preference number: 2 (lower is better)
Translates to: LWMPTRFPKGLGVEGRGRYLVEG*KAKEQL
Trigger: CAGTTGTTCCTTTGCCTTCCAGCCCTCCACCAGGTA...CCGGCCCCTTCCCTCTACTCCCAACCCCTTAGGGAATCTGGTCGGCATCCACAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
3UTR-3UTR CCA 90 bp CCAGTGCAGCCTCTGCAATTTCCAGATCTGCCACTAGAGGTCGGCATGGTCCTGGTCAGGCTCACCCTCTaGAAGACCACAGCCAATGAC +
Preference number: 2 (lower is better)
Translates to: PVQPLQFPDLPLEVGMVLVRLTL*KTTAND
Trigger: GTCATTGGCTGTGGTCTTCCAGAGGGTGAGCCTGAC...CAGGACCATGCCGACCTCTAGTGGCAGATCTGGAAATTGCAGAGGCTGCACTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
3UTR-3UTR GCA 90 bp GCCAGCAAATACACCTTACAACAGATGGGAAGTCCGGCTTCCCAAAGGACAAGCTACAGAGCAAGAGGGTaGCATCGGGCCAGTGCAGCC +
Preference number: 2 (lower is better)
Translates to: ASKYTLQQMGSPASQRTSYRARG*HRASAA
Trigger: GGCTGCACTGGCCCGATGGCACCCTCTTGCTCTGTA...GCTTGTCCTTTGGGAAGCCGGACTTCCCATCTGTTGTAAGGTGTATTTGCTGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
3UTR-3UTR CCA 90 bp TTGTTTTGGAAGTGTGCGGCCTGTGGATGCCGACCAGATTCCCTAAGGGGTTGGGGGGTTATTACCTGGTaGAGGGCTGGAAGGCAAAGG +
Preference number: 2 (lower is better)
Translates to: LFWKCAACGCRPDSLRGWGVITW*RAGRQR
Trigger: CCTTTGCCTTCCAGCCCTCCACCAGGTAATAACCCC...CCAACCCCTTAGGGAATCTGGTCGGCATCCACAGGCCGCACACTTCCAAAACAA
56% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
3UTR CAA 90 bp GCAATTTCCAGATCTGCCACTAGAGGTCGGCATGGTCCTGATTGCTaGTCAGGCTCACCCTCTGGAAGACCACAGCCAATGACAAAGGTC +
Preference number: 2 (lower is better)
Translates to: AISRSATRGRHGPDC*SGSPSGRPQPMTKV
Trigger: GACCTTTGTCATTGGCTGTGGTCTTCCAGAGGGTGAGCCTGACAAGCAATCAGGACCATGCCGACCTCTAGTGGCAGATCTGGAAATTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
3UTR-3UTR CCA 90 bp TTGTTTTGGAAGTGTGCGGCCTGTGGATGCCGACCAGATTCCCTAAGGGGTTGGATCCTTCGCCTATGCTaGTGCACAGAGATGACTAGG +
Preference number: 2 (lower is better)
Translates to: LFWKCAACGCRPDSLRGWILRLC*CTEMTR
Trigger: CCTAGTCATCTCTGTGCACCAGCATAGGCGAAGGAT...CCAACCCCTTAGGGAATCTGGTCGGCATCCACAGGCCGCACACTTCCAAAACAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
3UTR-3UTR GCA 90 bp CCAAGCCAGCAAATACACCTTACAACAGATGGGAAGTCCGGCTTCCCAAAGGACGAAAAGCCACTAAGGTaGCTACAGAGCAAGAGGGTG +
Preference number: 2 (lower is better)
Translates to: PSQQIHLTTDGKSGFPKDEKPLR*LQSKRV
Trigger: CACCCTCTTGCTCTGTAGGCACCTTAGTGGCTTTTC...GTCCTTTGGGAAGCCGGACTTCCCATCTGTTGTAAGGTGTATTTGCTGGCTTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
3UTR-3UTR CCA 90 bp GTCAATAAAGATACCACGATTGTTTTGGAAGTGTGCGGCCTGTGGATGCCGACCATCCTTCGCCTATGCTaGTGCACAGAGATGACTAGG +
Preference number: 2 (lower is better)
Translates to: VNKDTTIVLEVCGLWMPTILRLC*CTEMTR
Trigger: CCTAGTCATCTCTGTGCACCAGCATAGGCGAAGGAT...GGTCGGCATCCACAGGCCGCACACTTCCAAAACAATCGTGGTATCTTTATTGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
3UTR-3UTR GCA 90 bp TCAATAAAGATACCACGATTGTTTTGGAAGTGTGCGGCCTGTGGATGCCGACCAGAAAAGCCACTAAGGTaGCTACAGAGCAAGAGGGTG +
Preference number: 2 (lower is better)
Translates to: SIKIPRLFWKCAACGCRPEKPLR*LQSKRV
Trigger: CACCCTCTTGCTCTGTAGGCACCTTAGTGGCTTTTC...TGGTCGGCATCCACAGGCCGCACACTTCCAAAACAATCGTGGTATCTTTATTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
3UTR GCA 72 bp TCCAGATCTGCCACTAGAGGTCGGCATGGTCCTGATTaGTTGTCAGGCTCACCCTCTGGAAGACCACAGCCA +
Preference number: 3 (lower is better)
Translates to: SRSATRGRHGPD*LSGSPSGRPQP
Trigger: TGGCTGTGGTCTTCCAGAGGGTGAGCCTGACAAGCAATCAGGACCATGCCGACCTCTAGTGGCAGATCTGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
3UTR TCA 72 bp ATTACCTGGTGGAGGGCTGGAAGGCAAAGGAACAACTaGGACCATCAAGGCCCCTCAAGGGTTATGAGCCAT +
Preference number: 3 (lower is better)
Translates to: ITWWRAGRQRNN*DHQGPSRVMSH
Trigger: ATGGCTCATAACCCTTGAGGGGCCTTGATGGTCTCAGTTGTTCCTTTGCCTTCCAGCCCTCCACCAGGTAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
3UTR CCA 72 bp TTTCTGGATATACGGGGTTATTACCTGGTGGAGGGCTaGAAGGCAAAGGAACAACTGAGACCATCAAGGCCC +
Preference number: 3 (lower is better)
Translates to: FLDIRGYYLVEG*KAKEQLRPSRP
Trigger: GGGCCTTGATGGTCTCAGTTGTTCCTTTGCCTTCCAGCCCTCCACCAGGTAATAACCCCGTATATCCAGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
3UTR CCA 72 bp AAAGATACCACGATTGTTTTGGAAGTGTGCGGCCTGTaGATGCCGACCAGATTCCCTAAGGGGTTGGGAGTA +
Preference number: 3 (lower is better)
Translates to: KDTTIVLEVCGL*MPTRFPKGLGV
Trigger: TACTCCCAACCCCTTAGGGAATCTGGTCGGCATCCACAGGCCGCACACTTCCAAAACAATCGTGGTATCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
3UTR GCA 72 bp AAAGTCAATAAAGATACCACGATTGTTTTGGAAGTGTaGGGCCTGTGGATGCCGACCAGATTCCCTAAGGGG +
Preference number: 3 (lower is better)
Translates to: KVNKDTTIVLEV*GLWMPTRFPKG
Trigger: CCCCTTAGGGAATCTGGTCGGCATCCACAGGCCGCACACTTCCAAAACAATCGTGGTATCTTTATTGACTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
3UTR TCA 72 bp TTCCCAAAGGACAAGCCAGGAAAGATAGCAATCAGCTaGGGCAGACATCTGCCTACCCAGATAAACAAAACT +
Preference number: 3 (lower is better)
Translates to: FPKDKPGKIAIS*GRHLPTQINKT
Trigger: AGTTTTGTTTATCTGGGTAGGCAGATGTCTGCCTCAGCTGATTGCTATCTTTCCTGGCTTGTCCTTTGGGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR TCA 90 bp CTGTGGATGCCGACCAGATTCCCTAAGGGGTTGGGAGTAGAGGGAAGGGGCCGGGGCCAGATCCAGGTTTaGGGTGGGCAGGGGCCGGCC +
Preference number: 4 (lower is better)
Translates to: LWMPTRFPKGLGVEGRGRGQIQV*GGQGPA
Trigger: GGCCGGCCCCTGCCCACCTCAAACCTGGATCTGGCC...CCGGCCCCTTCCCTCTACTCCCAACCCCTTAGGGAATCTGGTCGGCATCCACAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp GGTGCCTACAGAGCAAGAGGGTGCCATCGGGCCAGTGCAGCCTCTGCAATTTCCGGTGGGCAAGACTCCTaGTGCAGGGGCCAGCGGCAG +
Preference number: 4 (lower is better)
Translates to: GAYRARGCHRASAASAISGGQDS*CRGQRQ
Trigger: CTGCCGCTGGCCCCTGCACCAGGAGTCTTGCCCACC...GGAAATTGCAGAGGCTGCACTGGCCCGATGGCACCCTCTTGCTCTGTAGGCACC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp GCCATCGGGCCAGTGCAGCCTCTGCAATTTCCAGATCTGCCACTAGAGGTCGGCCCACTCACCAGGGTCTaGAGGGGACCTGCCTGCACG +
Preference number: 4 (lower is better)
Translates to: AIGPVQPLQFPDLPLEVGPLTRV*RGPACT
Trigger: CGTGCAGGCAGGTCCCCTGCAGACCCTGGTGAGTGG...GCCGACCTCTAGTGGCAGATCTGGAAATTGCAGAGGCTGCACTGGCCCGATGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020846.8
CDS-3UTR GCA 90 bp CCAGTGCAGCCTCTGCAATTTCCAGATCTGCCACTAGAGGTCGGCATGGTCCTGGGCCGGCCCAGCGCTTaGAGGGCCAGCCACAGCTGT +
Preference number: 4 (lower is better)
Translates to: PVQPLQFPDLPLEVGMVLGRPSA*RASHSC
Trigger: ACAGCTGTGGCTGGCCCTGCAAGCGCTGGGCCGGCC...CAGGACCATGCCGACCTCTAGTGGCAGATCTGGAAATTGCAGAGGCTGCACTGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp GCCTACAGAGCAAGAGGGTGCCATCGGGCCAGTGCAGCCTCTGCAATTTCCAGACCTGTCTCCGTCAGCTaGCCCTGGGCTGGGCTGAGC +
Preference number: 4 (lower is better)
Translates to: AYRARGCHRASAASAISRPVSVS*PWAGLS
Trigger: GCTCAGCCCAGCCCAGGGGCAGCTGACGGAGACAGG...TCTGGAAATTGCAGAGGCTGCACTGGCCCGATGGCACCCTCTTGCTCTGTAGGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp GCCATCGGGCCAGTGCAGCCTCTGCAATTTCCAGATCTGCCACTAGAGGTCGGCCCGCCTCGGCCAGCATaGTCATTCGCTGCCCAGGAG +
Preference number: 4 (lower is better)
Translates to: AIGPVQPLQFPDLPLEVGPPRPA*SFAAQE
Trigger: CTCCTGGGCAGCGAATGAGCATGCTGGCCGAGGCGG...GCCGACCTCTAGTGGCAGATCTGGAAATTGCAGAGGCTGCACTGGCCCGATGGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp GGTGCCTACAGAGCAAGAGGGTGCCATCGGGCCAGTGCAGCCTCTGCAATTTCCGGCAGAGCCACTGCATaGCAAGAGGCACCGAGCCGC +
Preference number: 4 (lower is better)
Translates to: GAYRARGCHRASAASAISGRATA*QEAPSR
Trigger: GCGGCTCGGTGCCTCTTGCCATGCAGTGGCTCTGCC...GGAAATTGCAGAGGCTGCACTGGCCCGATGGCACCCTCTTGCTCTGTAGGCACC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp CTGTGGATGCCGACCAGATTCCCTAAGGGGTTGGGAGTAGAGGGAAGGGGCCGGTGGAGGGGACAAGGGTaGAGGTGTCACCTTGGGTCC +
Preference number: 4 (lower is better)
Translates to: LWMPTRFPKGLGVEGRGRWRGQG*RCHLGS
Trigger: GGACCCAAGGTGACACCTGCACCCTTGTCCCCTCCA...CCGGCCCCTTCCCTCTACTCCCAACCCCTTAGGGAATCTGGTCGGCATCCACAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp GCCATCGGGCCAGTGCAGCCTCTGCAATTTCCAGATCTGCCACTAGAGGTCGGCGGGAGCGGTCCAGCATaGCTCGGCTGTGTGAAGGCA +
Preference number: 4 (lower is better)
Translates to: AIGPVQPLQFPDLPLEVGGSGPA*LGCVKA
Trigger: TGCCTTCACACAGCCGAGGCATGCTGGACCGCTCCC...GCCGACCTCTAGTGGCAGATCTGGAAATTGCAGAGGCTGCACTGGCCCGATGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp GCTAGGGAAAAGCCACTAAGGTGCCTACAGAGCAAGAGGGTGCCATCGGGCCAGCCACTCACCAGGGTCTaGACGGCTGTGCCAGGAGCC +
Preference number: 4 (lower is better)
Translates to: AREKPLRCLQSKRVPSGQPLTRV*TAVPGA
Trigger: GGCTCCTGGCACAGCCGTGCAGACCCTGGTGAGTGG...CTGGCCCGATGGCACCCTCTTGCTCTGTAGGCACCTTAGTGGCTTTTCCCTAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp CTGTGGATGCCGACCAGATTCCCTAAGGGGTTGGGAGTAGAGGGAAGGGGCCGGTGGGAGGCCAAGCTTTaGACCTGGGTGTGCAGGGCA +
Preference number: 4 (lower is better)
Translates to: LWMPTRFPKGLGVEGRGRWEAKL*TWVCRA
Trigger: TGCCCTGCACACCCAGGTCCAAAGCTTGGCCTCCCA...CCGGCCCCTTCCCTCTACTCCCAACCCCTTAGGGAATCTGGTCGGCATCCACAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp GCTAGGGAAAAGCCACTAAGGTGCCTACAGAGCAAGAGGGTGCCATCGGGCCAGCCCACCCAGAGACGCTaGAGCAGGTGGCGGATGAGG +
Preference number: 4 (lower is better)
Translates to: AREKPLRCLQSKRVPSGQPTQRR*SRWRMR
Trigger: CCTCATCCGCCACCTGCTCCAGCGTCTCTGGGTGGG...CTGGCCCGATGGCACCCTCTTGCTCTGTAGGCACCTTAGTGGCTTTTCCCTAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp AGCAAGAGGGTGCCATCGGGCCAGTGCAGCCTCTGCAATTTCCAGATCTGCCACCCACCACTTGGCCACTaGGTCTGGGCCAGTGGTGGC +
Preference number: 4 (lower is better)
Translates to: SKRVPSGQCSLCNFQICHPPLGH*VWASGG
Trigger: GCCACCACTGGCCCAGACCCAGTGGCCAAGTGGTGG...GTGGCAGATCTGGAAATTGCAGAGGCTGCACTGGCCCGATGGCACCCTCTTGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp CTGTGGATGCCGACCAGATTCCCTAAGGGGTTGGGAGTAGAGGGAAGGGGCCGGCTGCGATCCAGGAGCTaGTGTGTCCGGGCAGGACTT +
Preference number: 4 (lower is better)
Translates to: LWMPTRFPKGLGVEGRGRLRSRS*CVRAGL
Trigger: AAGTCCTGCCCGGACACACCAGCTCCTGGATCGCAG...CCGGCCCCTTCCCTCTACTCCCAACCCCTTAGGGAATCTGGTCGGCATCCACAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp GCCTACAGAGCAAGAGGGTGCCATCGGGCCAGTGCAGCCTCTGCAATTTCCAGATGTGCTCCCGCCATGTaGGCCGTGGCTCCAGCTCAG +
Preference number: 4 (lower is better)
Translates to: AYRARGCHRASAASAISRCAPAM*AVAPAQ
Trigger: CTGAGCTGGAGCCACGGCCCACATGGCGGGAGCACA...TCTGGAAATTGCAGAGGCTGCACTGGCCCGATGGCACCCTCTTGCTCTGTAGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp GCTAGGGAAAAGCCACTAAGGTGCCTACAGAGCAAGAGGGTGCCATCGGGCCAGTGTGCTCCCGCCATGTaGGCCGTGGCTCCAGCTCAG +
Preference number: 4 (lower is better)
Translates to: AREKPLRCLQSKRVPSGQCAPAM*AVAPAQ
Trigger: CTGAGCTGGAGCCACGGCCCACATGGCGGGAGCACA...CTGGCCCGATGGCACCCTCTTGCTCTGTAGGCACCTTAGTGGCTTTTCCCTAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR TCA 90 bp CTGTGGATGCCGACCAGATTCCCTAAGGGGTTGGGAGTAGAGGGAAGGGGCCGGCAGGCTGTAGGATGGTaGGTGGCACTGGCTCCTCTT +
Preference number: 4 (lower is better)
Translates to: LWMPTRFPKGLGVEGRGRQAVGW*VALAPL
Trigger: AAGAGGAGCCAGTGCCACTCACCATCCTACAGCCTG...CCGGCCCCTTCCCTCTACTCCCAACCCCTTAGGGAATCTGGTCGGCATCCACAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR TCA 90 bp GCCATCGGGCCAGTGCAGCCTCTGCAATTTCCAGATCTGCCACTAGAGGTCGGCGGAGCAGGTGGCGGATaGGGTTCCAAAGCAGACTGC +
Preference number: 4 (lower is better)
Translates to: AIGPVQPLQFPDLPLEVGGAGGG*GSKADC
Trigger: GCAGTCTGCTTTGGAACCTCATCCGCCACCTGCTCC...GCCGACCTCTAGTGGCAGATCTGGAAATTGCAGAGGCTGCACTGGCCCGATGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp AGCAAGAGGGTGCCATCGGGCCAGTGCAGCCTCTGCAATTTCCAGATCTGCCACGCCATCTCTGCTCTCTaGCTCCAGCATGCTGCGCCC +
Preference number: 4 (lower is better)
Translates to: SKRVPSGQCSLCNFQICHAISAL*LQHAAP
Trigger: GGGCGCAGCATGCTGGAGGCAGAGAGCAGAGATGGC...GTGGCAGATCTGGAAATTGCAGAGGCTGCACTGGCCCGATGGCACCCTCTTGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp GGTGCCTACAGAGCAAGAGGGTGCCATCGGGCCAGTGCAGCCTCTGCAATTTCCCCCTCCTCCTCAGACTaGGATCCAGGAGCTGGTGTG +
Preference number: 4 (lower is better)
Translates to: GAYRARGCHRASAASAISPSSSD*DPGAGV
Trigger: CACACCAGCTCCTGGATCGCAGTCTGAGGAGGAGGG...GGAAATTGCAGAGGCTGCACTGGCCCGATGGCACCCTCTTGCTCTGTAGGCACC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp AGAGGGTGCCATCGGGCCAGTGCAGCCTCTGCAATTTCCAGATCTGCCACTAGACCGCCTCGGCCAGCATaGTCATTCGCTGCCCAGGAG +
Preference number: 4 (lower is better)
Translates to: RGCHRASAASAISRSATRPPRPA*SFAAQE
Trigger: CTCCTGGGCAGCGAATGAGCATGCTGGCCGAGGCGG...TCTAGTGGCAGATCTGGAAATTGCAGAGGCTGCACTGGCCCGATGGCACCCTCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp GCTAGGGAAAAGCCACTAAGGTGCCTACAGAGCAAGAGGGTGCCATCGGGCCAGAGGAGAGTTGGCACCTaGGCTGCTGGGGCCTGTGTC +
Preference number: 4 (lower is better)
Translates to: AREKPLRCLQSKRVPSGQRRVGT*AAGACV
Trigger: GACACAGGCCCCAGCAGCCCAGGTGCCAACTCTCCT...CTGGCCCGATGGCACCCTCTTGCTCTGTAGGCACCTTAGTGGCTTTTCCCTAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp CTGTGGATGCCGACCAGATTCCCTAAGGGGTTGGGAGTAGAGGGAAGGGGCCGGCGGCAGGCTAGATGGTaGCTGCTGAGTGTTTCCTGG +
Preference number: 4 (lower is better)
Translates to: LWMPTRFPKGLGVEGRGRRQARW*LLSVSW
Trigger: CCAGGAAACACTCAGCAGCCACCATCTAGCCTGCCG...CCGGCCCCTTCCCTCTACTCCCAACCCCTTAGGGAATCTGGTCGGCATCCACAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp AGAGGGTGCCATCGGGCCAGTGCAGCCTCTGCAATTTCCAGATCTGCCACTAGATGTGCTAGGCAGGCCTaGCGGGCGCTGCTCAGGAAG +
Preference number: 4 (lower is better)
Translates to: RGCHRASAASAISRSATRCARQA*RALLRK
Trigger: CTTCCTGAGCAGCGCCCGCCAGGCCTGCCTAGCACA...TCTAGTGGCAGATCTGGAAATTGCAGAGGCTGCACTGGCCCGATGGCACCCTCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp GGTGCCTACAGAGCAAGAGGGTGCCATCGGGCCAGTGCAGCCTCTGCAATTTCCTCCGTCAGCTGCCCCTaGGCTGGGCTGAGCAATACA +
Preference number: 4 (lower is better)
Translates to: GAYRARGCHRASAASAISSVSCP*AGLSNT
Trigger: TGTATTGCTCAGCCCAGCCCAGGGGCAGCTGACGGA...GGAAATTGCAGAGGCTGCACTGGCCCGATGGCACCCTCTTGCTCTGTAGGCACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp CTGTGGATGCCGACCAGATTCCCTAAGGGGTTGGGAGTAGAGGGAAGGGGCCGGTGCCTCCTTTGCCACTaGAACCTGCCCTCCTCCTCA +
Preference number: 4 (lower is better)
Translates to: LWMPTRFPKGLGVEGRGRCLLCH*NLPSSS
Trigger: TGAGGAGGAGGGCAGGTTCCAGTGGCAAAGGAGGCA...CCGGCCCCTTCCCTCTACTCCCAACCCCTTAGGGAATCTGGTCGGCATCCACAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp GCCTACAGAGCAAGAGGGTGCCATCGGGCCAGTGCAGCCTCTGCAATTTCCAGACGCAGGAGCATCTGCTaGCAGTCCAGCAGTAGCCGG +
Preference number: 4 (lower is better)
Translates to: AYRARGCHRASAASAISRRRSIC*QSSSSR
Trigger: CCGGCTACTGCTGGACTGCCAGCAGATGCTCCTGCG...TCTGGAAATTGCAGAGGCTGCACTGGCCCGATGGCACCCTCTTGCTCTGTAGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR TCA 90 bp GGTGCCTACAGAGCAAGAGGGTGCCATCGGGCCAGTGCAGCCTCTGCAATTTCCCAGGCTGTAGGATGGTaGGTGGCACTGGCTCCTCTT +
Preference number: 4 (lower is better)
Translates to: GAYRARGCHRASAASAISQAVGW*VALAPL
Trigger: AAGAGGAGCCAGTGCCACTCACCATCCTACAGCCTG...GGAAATTGCAGAGGCTGCACTGGCCCGATGGCACCCTCTTGCTCTGTAGGCACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR TCA 90 bp GCCAGCAAATACACCTTACAACAGATGGGAAGTCCGGCTTCCCAAAGGACAAGCGGCCAGATCCAGGTTTaGGGTGGGCAGGGGCCGGCC +
Preference number: 4 (lower is better)
Translates to: ASKYTLQQMGSPASQRTSGQIQV*GGQGPA
Trigger: GGCCGGCCCCTGCCCACCTCAAACCTGGATCTGGCC...GCTTGTCCTTTGGGAAGCCGGACTTCCCATCTGTTGTAAGGTGTATTTGCTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR TCA 90 bp TTGTTTTGGAAGTGTGCGGCCTGTGGATGCCGACCAGATTCCCTAAGGGGTTGGGAGCCCGGGCAGCCTTaGAGGAGTACAGAGCTGCCC +
Preference number: 4 (lower is better)
Translates to: LFWKCAACGCRPDSLRGWEPGQP*RSTELP
Trigger: GGGCAGCTCTGTACTCCTTCAAGGCTGCCCGGGCTC...CCAACCCCTTAGGGAATCTGGTCGGCATCCACAGGCCGCACACTTCCAAAACAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp TTGTTTTGGAAGTGTGCGGCCTGTGGATGCCGACCAGATTCCCTAAGGGGTTGGAGTTGGCACCTGGGCTaGTGGGGCCTGTGTCCCCTG +
Preference number: 4 (lower is better)
Translates to: LFWKCAACGCRPDSLRGWSWHLG*WGLCPL
Trigger: CAGGGGACACAGGCCCCAGCAGCCCAGGTGCCAACT...CCAACCCCTTAGGGAATCTGGTCGGCATCCACAGGCCGCACACTTCCAAAACAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp CTGTGGATGCCGACCAGATTCCCTAAGGGGTTGGGAGTAGAGGGAAGGGGCCGGGTCCTCCTGTGTACTTaGCCATGGCATGCAGCTGGT +
Preference number: 4 (lower is better)
Translates to: LWMPTRFPKGLGVEGRGRVLLCT*PWHAAG
Trigger: ACCAGCTGCATGCCATGGGCAAGTACACAGGAGGAC...CCGGCCCCTTCCCTCTACTCCCAACCCCTTAGGGAATCTGGTCGGCATCCACAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp TTGTTTTGGAAGTGTGCGGCCTGTGGATGCCGACCAGATTCCCTAAGGGGTTGGAGGCCGGAAGCTCTGTaGCAACCGCCGCAGGCTGCT +
Preference number: 4 (lower is better)
Translates to: LFWKCAACGCRPDSLRGWRPEAL*QPPQAA
Trigger: AGCAGCCTGCGGCGGTTGGCACAGAGCTTCCGGCCT...CCAACCCCTTAGGGAATCTGGTCGGCATCCACAGGCCGCACACTTCCAAAACAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp AGCAAGAGGGTGCCATCGGGCCAGTGCAGCCTCTGCAATTTCCAGATCTGCCACGGGCAGATAGCAGGATaGCAACAGCAGGGCCTCGGT +
Preference number: 4 (lower is better)
Translates to: SKRVPSGQCSLCNFQICHGQIAG*QQQGLG
Trigger: ACCGAGGCCCTGCTGTTGGCATCCTGCTATCTGCCC...GTGGCAGATCTGGAAATTGCAGAGGCTGCACTGGCCCGATGGCACCCTCTTGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp ACCCTCTGGAAGACCACAGCCAATGACAAAGGTCCTCAAGGGAAAGCTTTGGGGGGTGGGCAAGACTCCTaGTGCAGGGGCCAGCGGCAG +
Preference number: 4 (lower is better)
Translates to: TLWKTTANDKGPQGKALGGGQDS*CRGQRQ
Trigger: CTGCCGCTGGCCCCTGCACCAGGAGTCTTGCCCACC...CCCCAAAGCTTTCCCTTGAGGACCTTTGTCATTGGCTGTGGTCTTCCAGAGGGT
60% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp AGAGGGTGCCATCGGGCCAGTGCAGCCTCTGCAATTTCCAGATCTGCCACTAGAGCCAAGCTTTGGACCTaGGTGTGCAGGGCAGGGGTG +
Preference number: 4 (lower is better)
Translates to: RGCHRASAASAISRSATRAKLWT*VCRAGV
Trigger: CACCCCTGCCCTGCACACCCAGGTCCAAAGCTTGGC...TCTAGTGGCAGATCTGGAAATTGCAGAGGCTGCACTGGCCCGATGGCACCCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp CTGTGGATGCCGACCAGATTCCCTAAGGGGTTGGGAGTAGAGGGAAGGGGCCGGAGCGGATGTAGTCGATaGCCTTGCGCAAGACAGCAG +
Preference number: 4 (lower is better)
Translates to: LWMPTRFPKGLGVEGRGRSGCSR*PCARQQ
Trigger: CTGCTGTCTTGCGCAAGGCCATCGACTACATCCGCT...CCGGCCCCTTCCCTCTACTCCCAACCCCTTAGGGAATCTGGTCGGCATCCACAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp TTGTTTTGGAAGTGTGCGGCCTGTGGATGCCGACCAGATTCCCTAAGGGGTTGGCCCACCCAGAGACGCTaGAGCAGGTGGCGGATGAGG +
Preference number: 4 (lower is better)
Translates to: LFWKCAACGCRPDSLRGWPTQRR*SRWRMR
Trigger: CCTCATCCGCCACCTGCTCCAGCGTCTCTGGGTGGG...CCAACCCCTTAGGGAATCTGGTCGGCATCCACAGGCCGCACACTTCCAAAACAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp GCCTACAGAGCAAGAGGGTGCCATCGGGCCAGTGCAGCCTCTGCAATTTCCAGATCCGTCAGCTGCCCCTaGGCTGGGCTGAGCAATACA +
Preference number: 4 (lower is better)
Translates to: AYRARGCHRASAASAISRSVSCP*AGLSNT
Trigger: TGTATTGCTCAGCCCAGCCCAGGGGCAGCTGACGGA...TCTGGAAATTGCAGAGGCTGCACTGGCCCGATGGCACCCTCTTGCTCTGTAGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp CTGTGGATGCCGACCAGATTCCCTAAGGGGTTGGGAGTAGAGGGAAGGGGCCGGCCATCAGCCGAGCTGTaGCCTCATGTAGGAATACCC +
Preference number: 4 (lower is better)
Translates to: LWMPTRFPKGLGVEGRGRPSAEL*PHVGIP
Trigger: GGGTATTCCTACATGAGGCCACAGCTCGGCTGATGG...CCGGCCCCTTCCCTCTACTCCCAACCCCTTAGGGAATCTGGTCGGCATCCACAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp AGCAAGAGGGTGCCATCGGGCCAGTGCAGCCTCTGCAATTTCCAGATCTGCCACCTGCGATCCAGGAGCTaGTGTGTCCGGGCAGGACTT +
Preference number: 4 (lower is better)
Translates to: SKRVPSGQCSLCNFQICHLRSRS*CVRAGL
Trigger: AAGTCCTGCCCGGACACACCAGCTCCTGGATCGCAG...GTGGCAGATCTGGAAATTGCAGAGGCTGCACTGGCCCGATGGCACCCTCTTGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp CCAGTGCAGCCTCTGCAATTTCCAGATCTGCCACTAGAGGTCGGCATGGTCCTGCGCAGGAGCATCTGCTaGCAGTCCAGCAGTAGCCGG +
Preference number: 4 (lower is better)
Translates to: PVQPLQFPDLPLEVGMVLRRSIC*QSSSSR
Trigger: CCGGCTACTGCTGGACTGCCAGCAGATGCTCCTGCG...CAGGACCATGCCGACCTCTAGTGGCAGATCTGGAAATTGCAGAGGCTGCACTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR TCA 90 bp CCAGTGCAGCCTCTGCAATTTCCAGATCTGCCACTAGAGGTCGGCATGGTCCTGGCACTGGCTCCTCTTTaGTCCCAGGCCCAGGGGAAA +
Preference number: 4 (lower is better)
Translates to: PVQPLQFPDLPLEVGMVLALAPL*SQAQGK
Trigger: TTTCCCCTGGGCCTGGGATCAAAGAGGAGCCAGTGC...CAGGACCATGCCGACCTCTAGTGGCAGATCTGGAAATTGCAGAGGCTGCACTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp TTGTTTTGGAAGTGTGCGGCCTGTGGATGCCGACCAGATTCCCTAAGGGGTTGGGGGAGCGGTCCAGCATaGCTCGGCTGTGTGAAGGCA +
Preference number: 4 (lower is better)
Translates to: LFWKCAACGCRPDSLRGWGSGPA*LGCVKA
Trigger: TGCCTTCACACAGCCGAGGCATGCTGGACCGCTCCC...CCAACCCCTTAGGGAATCTGGTCGGCATCCACAGGCCGCACACTTCCAAAACAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp TTGTTTTGGAAGTGTGCGGCCTGTGGATGCCGACCAGATTCCCTAAGGGGTTGGGCCATCTCTGCTCTCTaGCTCCAGCATGCTGCGCCC +
Preference number: 4 (lower is better)
Translates to: LFWKCAACGCRPDSLRGWAISAL*LQHAAP
Trigger: GGGCGCAGCATGCTGGAGGCAGAGAGCAGAGATGGC...CCAACCCCTTAGGGAATCTGGTCGGCATCCACAGGCCGCACACTTCCAAAACAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp AACAGATGGGAAGTCCGGCTTCCCAAAGGACAAGCCAGGAAAGATAGCAATCAGGGCCGGCCCAGCGCTTaGAGGGCCAGCCACAGCTGT +
Preference number: 4 (lower is better)
Translates to: NRWEVRLPKGQARKDSNQGRPSA*RASHSC
Trigger: ACAGCTGTGGCTGGCCCTGCAAGCGCTGGGCCGGCC...CTGATTGCTATCTTTCCTGGCTTGTCCTTTGGGAAGCCGGACTTCCCATCTGTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp GGTGCCTACAGAGCAAGAGGGTGCCATCGGGCCAGTGCAGCCTCTGCAATTTCCGGAGATAGCATCTCCTaGGCACTCAGCCAGGTTGAG +
Preference number: 4 (lower is better)
Translates to: GAYRARGCHRASAASAISGDSIS*ALSQVE
Trigger: CTCAACCTGGCTGAGTGCGCAGGAGATGCTATCTCC...GGAAATTGCAGAGGCTGCACTGGCCCGATGGCACCCTCTTGCTCTGTAGGCACC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp GCCAGCAAATACACCTTACAACAGATGGGAAGTCCGGCTTCCCAAAGGACAAGCCCTGTCTCCGTCAGCTaGCCCTGGGCTGGGCTGAGC +
Preference number: 4 (lower is better)
Translates to: ASKYTLQQMGSPASQRTSPVSVS*PWAGLS
Trigger: GCTCAGCCCAGCCCAGGGGCAGCTGACGGAGACAGG...GCTTGTCCTTTGGGAAGCCGGACTTCCCATCTGTTGTAAGGTGTATTTGCTGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp GGTGCCTACAGAGCAAGAGGGTGCCATCGGGCCAGTGCAGCCTCTGCAATTTCCGGTAGCGCTTCTCAATaGCATTGTGGGCTGTGCGCT +
Preference number: 4 (lower is better)
Translates to: GAYRARGCHRASAASAISGSASQ*HCGLCA
Trigger: AGCGCACAGCCCACAATGCCATTGAGAAGCGCTACC...GGAAATTGCAGAGGCTGCACTGGCCCGATGGCACCCTCTTGCTCTGTAGGCACC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp CGGGGTTATTACCTGGTGGAGGGCTGGAAGGCAAAGGAACAACTGAGACCATCACCGCATCCCGGGCACTaGCACGGGCATCCTTCCTCA +
Preference number: 4 (lower is better)
Translates to: RGYYLVEGWKAKEQLRPSPHPGH*HGHPSS
Trigger: TGAGGAAGGATGCCCGTGCCAGTGCCCGGGATGCGG...TGATGGTCTCAGTTGTTCCTTTGCCTTCCAGCCCTCCACCAGGTAATAACCCCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp CGGGGTTATTACCTGGTGGAGGGCTGGAAGGCAAAGGAACAACTGAGACCATCACTGGGTCTGGGCCAGTaGTGGCAGCCATGCTGGAGC +
Preference number: 4 (lower is better)
Translates to: RGYYLVEGWKAKEQLRPSLGLGQ*WQPCWS
Trigger: GCTCCAGCATGGCTGCCACCACTGGCCCAGACCCAG...TGATGGTCTCAGTTGTTCCTTTGCCTTCCAGCCCTCCACCAGGTAATAACCCCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp AGAGGGTGCCATCGGGCCAGTGCAGCCTCTGCAATTTCCAGATCTGCCACTAGACCCGCAGGTACCCACTaGCCTTCTCACAGATGGCCA +
Preference number: 4 (lower is better)
Translates to: RGCHRASAASAISRSATRPAGTH*PSHRWP
Trigger: TGGCCATCTGTGAGAAGGCCAGTGGGTACCTGCGGG...TCTAGTGGCAGATCTGGAAATTGCAGAGGCTGCACTGGCCCGATGGCACCCTCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp AGAGGGTGCCATCGGGCCAGTGCAGCCTCTGCAATTTCCAGATCTGCCACTAGATCCAGAGCAGAGGCCTaGGGTCCATTGCTGGTACCG +
Preference number: 4 (lower is better)
Translates to: RGCHRASAASAISRSATRSRAEA*GPLLVP
Trigger: CGGTACCAGCAATGGACCCCAGGCCTCTGCTCTGGA...TCTAGTGGCAGATCTGGAAATTGCAGAGGCTGCACTGGCCCGATGGCACCCTCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR TCA 90 bp GCCATCGGGCCAGTGCAGCCTCTGCAATTTCCAGATCTGCCACTAGAGGTCGGCATATCCAAGGGCATCTaGGAACTCCCTGTCTCCGTC +
Preference number: 4 (lower is better)
Translates to: AIGPVQPLQFPDLPLEVGISKGI*ELPVSV
Trigger: GACGGAGACAGGGAGTTCTCAGATGCCCTTGGATAT...GCCGACCTCTAGTGGCAGATCTGGAAATTGCAGAGGCTGCACTGGCCCGATGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR TCA 90 bp GCCTACAGAGCAAGAGGGTGCCATCGGGCCAGTGCAGCCTCTGCAATTTCCAGACAGCCATGCTGGAGCTaGCAGAGAAACTGCAAGCAG +
Preference number: 4 (lower is better)
Translates to: AYRARGCHRASAASAISRQPCWS*QRNCKQ
Trigger: CTGCTTGCAGTTTCTCTGTCAGCTCCAGCATGGCTG...TCTGGAAATTGCAGAGGCTGCACTGGCCCGATGGCACCCTCTTGCTCTGTAGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp CCAGTGCAGCCTCTGCAATTTCCAGATCTGCCACTAGAGGTCGGCATGGTCCTGTTTGCCACTGGAACCTaGCCTCCTCCTCAGACTGCG +
Preference number: 4 (lower is better)
Translates to: PVQPLQFPDLPLEVGMVLFATGT*PPPQTA
Trigger: CGCAGTCTGAGGAGGAGGGCAGGTTCCAGTGGCAAA...CAGGACCATGCCGACCTCTAGTGGCAGATCTGGAAATTGCAGAGGCTGCACTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp CTGTGGATGCCGACCAGATTCCCTAAGGGGTTGGGAGTAGAGGGAAGGGGCCGGGGGAAGTCACTGTCTTaGTTGTTGATGAGCTGGAGC +
Preference number: 4 (lower is better)
Translates to: LWMPTRFPKGLGVEGRGRGKSLS*LLMSWS
Trigger: GCTCCAGCTCATCAACAACCAAGACAGTGACTTCCC...CCGGCCCCTTCCCTCTACTCCCAACCCCTTAGGGAATCTGGTCGGCATCCACAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000020846.8
CDS-3UTR CCA 90 bp CGGGGTTATTACCTGGTGGAGGGCTGGAAGGCAAAGGAACAACTGAGACCATCATGTGCAGGGCAGGGGTaGGCAAGACTCCTGGTGCAG +
Preference number: 4 (lower is better)
Translates to: RGYYLVEGWKAKEQLRPSCAGQG*ARLLVQ
Trigger: CTGCACCAGGAGTCTTGCCCACCCCTGCCCTGCACA...TGATGGTCTCAGTTGTTCCTTTGCCTTCCAGCCCTCCACCAGGTAATAACCCCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp CTGTGGATGCCGACCAGATTCCCTAAGGGGTTGGGAGTAGAGGGAAGGGGCCGGTGCCTTGATGAAGTGTaGCTGCAGTACAACTGGGAC +
Preference number: 4 (lower is better)
Translates to: LWMPTRFPKGLGVEGRGRCLDEV*LQYNWD
Trigger: GTCCCAGTTGTACTGCAGCCACACTTCATCAAGGCA...CCGGCCCCTTCCCTCTACTCCCAACCCCTTAGGGAATCTGGTCGGCATCCACAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp CCAGTGCAGCCTCTGCAATTTCCAGATCTGCCACTAGAGGTCGGCATGGTCCTGGTACTGTGGCCAAGATaGTCCCTCCACTCACCAGGG +
Preference number: 4 (lower is better)
Translates to: PVQPLQFPDLPLEVGMVLVLWPR*SLHSPG
Trigger: CCCTGGTGAGTGGAGGGACCATCTTGGCCACAGTAC...CAGGACCATGCCGACCTCTAGTGGCAGATCTGGAAATTGCAGAGGCTGCACTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp CGGGGTTATTACCTGGTGGAGGGCTGGAAGGCAAAGGAACAACTGAGACCATCAGACAAGGGGCTACTCTaGGAGGGTGAGCCGGCGTCT +
Preference number: 4 (lower is better)
Translates to: RGYYLVEGWKAKEQLRPSDKGLL*EGEPAS
Trigger: AGACGCCGGCTCACCCTCCCAGAGTAGCCCCTTGTC...TGATGGTCTCAGTTGTTCCTTTGCCTTCCAGCCCTCCACCAGGTAATAACCCCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp GCCAGCAAATACACCTTACAACAGATGGGAAGTCCGGCTTCCCAAAGGACAAGCCCGCATCCCGGGCACTaGCACGGGCATCCTTCCTCA +
Preference number: 4 (lower is better)
Translates to: ASKYTLQQMGSPASQRTSPHPGH*HGHPSS
Trigger: TGAGGAAGGATGCCCGTGCCAGTGCCCGGGATGCGG...GCTTGTCCTTTGGGAAGCCGGACTTCCCATCTGTTGTAAGGTGTATTTGCTGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp ACCCTCTGGAAGACCACAGCCAATGACAAAGGTCCTCAAGGGAAAGCTTTGGGGCTTGGCCACTGGGTCTaGGCCAGTGGTGGCAGCCAT +
Preference number: 4 (lower is better)
Translates to: TLWKTTANDKGPQGKALGLGHWV*ASGGSH
Trigger: ATGGCTGCCACCACTGGCCCAGACCCAGTGGCCAAG...CCCCAAAGCTTTCCCTTGAGGACCTTTGTCATTGGCTGTGGTCTTCCAGAGGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp TATACGGGGTTATTACCTGGTGGAGGGCTGGAAGGCAAAGGAACAACTGAGACCCCACCACTTGGCCACTaGGTCTGGGCCAGTGGTGGC +
Preference number: 4 (lower is better)
Translates to: YTGLLPGGGLEGKGTTETPPLGH*VWASGG
Trigger: GCCACCACTGGCCCAGACCCAGTGGCCAAGTGGTGG...GGTCTCAGTTGTTCCTTTGCCTTCCAGCCCTCCACCAGGTAATAACCCCGTATA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR TCA 90 bp GGTGCCTACAGAGCAAGAGGGTGCCATCGGGCCAGTGCAGCCTCTGCAATTTCCCCACCACCAGGTCTTTaGGCTCCACAATCTTGTCAT +
Preference number: 4 (lower is better)
Translates to: GAYRARGCHRASAASAISPPPGL*APQSCH
Trigger: ATGACAAGATTGTGGAGCTCAAAGACCTGGTGGTGG...GGAAATTGCAGAGGCTGCACTGGCCCGATGGCACCCTCTTGCTCTGTAGGCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR TCA 90 bp GCCAGCAAATACACCTTACAACAGATGGGAAGTCCGGCTTCCCAAAGGACAAGCCACCACAGCTGTCAGTaGGGCCCACCACTTGGCCAC +
Preference number: 4 (lower is better)
Translates to: ASKYTLQQMGSPASQRTSHHSCQ*GPPLGH
Trigger: GTGGCCAAGTGGTGGGCCTCACTGACAGCTGTGGTG...GCTTGTCCTTTGGGAAGCCGGACTTCCCATCTGTTGTAAGGTGTATTTGCTGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR TCA 90 bp TATACGGGGTTATTACCTGGTGGAGGGCTGGAAGGCAAAGGAACAACTGAGACCCACCACAGCTGTCAGTaGGGCCCACCACTTGGCCAC +
Preference number: 4 (lower is better)
Translates to: YTGLLPGGGLEGKGTTETHHSCQ*GPPLGH
Trigger: GTGGCCAAGTGGTGGGCCTCACTGACAGCTGTGGTG...GGTCTCAGTTGTTCCTTTGCCTTCCAGCCCTCCACCAGGTAATAACCCCGTATA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp GCCATCGGGCCAGTGCAGCCTCTGCAATTTCCAGATCTGCCACTAGAGGTCGGCTTGATGAAGTGTGGCTaGAGTACAACTGGGACCTGC +
Preference number: 4 (lower is better)
Translates to: AIGPVQPLQFPDLPLEVGLMKCG*STTGTC
Trigger: GCAGGTCCCAGTTGTACTGCAGCCACACTTCATCAA...GCCGACCTCTAGTGGCAGATCTGGAAATTGCAGAGGCTGCACTGGCCCGATGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp TATACGGGGTTATTACCTGGTGGAGGGCTGGAAGGCAAAGGAACAACTGAGACCCTGAGCCTAGGGCCTTaGTGCCAGCTGCGAGTCGGT +
Preference number: 4 (lower is better)
Translates to: YTGLLPGGGLEGKGTTETLSLGP*CQLRVG
Trigger: ACCGACTCGCAGCTGGCAGCAAGGCCCTAGGCTCAG...GGTCTCAGTTGTTCCTTTGCCTTCCAGCCCTCCACCAGGTAATAACCCCGTATA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp GCTAGGGAAAAGCCACTAAGGTGCCTACAGAGCAAGAGGGTGCCATCGGGCCAGTACTTGCCCATGGCATaGAGCTGGTGCAGCTTATGG +
Preference number: 4 (lower is better)
Translates to: AREKPLRCLQSKRVPSGQYLPMA*SWCSLW
Trigger: CCATAAGCTGCACCAGCTGCATGCCATGGGCAAGTA...CTGGCCCGATGGCACCCTCTTGCTCTGTAGGCACCTTAGTGGCTTTTCCCTAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp CCAGTGCAGCCTCTGCAATTTCCAGATCTGCCACTAGAGGTCGGCATGGTCCTGGGAGATAGCATCTCCTaGGCACTCAGCCAGGTTGAG +
Preference number: 4 (lower is better)
Translates to: PVQPLQFPDLPLEVGMVLGDSIS*ALSQVE
Trigger: CTCAACCTGGCTGAGTGCGCAGGAGATGCTATCTCC...CAGGACCATGCCGACCTCTAGTGGCAGATCTGGAAATTGCAGAGGCTGCACTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp GGTGCCTACAGAGCAAGAGGGTGCCATCGGGCCAGTGCAGCCTCTGCAATTTCCGATCTCTGCCAGTGTTaGCATGGAGATAGCATCTCC +
Preference number: 4 (lower is better)
Translates to: GAYRARGCHRASAASAISDLCQC*HGDSIS
Trigger: GGAGATGCTATCTCCATGGCAACACTGGCAGAGATC...GGAAATTGCAGAGGCTGCACTGGCCCGATGGCACCCTCTTGCTCTGTAGGCACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp CCTGATTGCTTGTCAGGCTCACCCTCTGGAAGACCACAGCCAATGACAAAGGTCAGGCCTGGCGGGCGCTaGTCAGGAAGAAACGTGTCA +
Preference number: 4 (lower is better)
Translates to: PDCLSGSPSGRPQPMTKVRPGGR*SGRNVS
Trigger: TGACACGTTTCTTCCTGAGCAGCGCCCGCCAGGCCT...GACCTTTGTCATTGGCTGTGGTCTTCCAGAGGGTGAGCCTGACAAGCAATCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp GTCAATAAAGATACCACGATTGTTTTGGAAGTGTGCGGCCTGTGGATGCCGACCAGGCCGGAAGCTCTGTaGCAACCGCCGCAGGCTGCT +
Preference number: 4 (lower is better)
Translates to: VNKDTTIVLEVCGLWMPTRPEAL*QPPQAA
Trigger: AGCAGCCTGCGGCGGTTGGCACAGAGCTTCCGGCCT...GGTCGGCATCCACAGGCCGCACACTTCCAAAACAATCGTGGTATCTTTATTGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp TATACGGGGTTATTACCTGGTGGAGGGCTGGAAGGCAAAGGAACAACTGAGACCGCCAAGCTTTGGACCTaGGTGTGCAGGGCAGGGGTG +
Preference number: 4 (lower is better)
Translates to: YTGLLPGGGLEGKGTTETAKLWT*VCRAGV
Trigger: CACCCCTGCCCTGCACACCCAGGTCCAAAGCTTGGC...GGTCTCAGTTGTTCCTTTGCCTTCCAGCCCTCCACCAGGTAATAACCCCGTATA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp AGCAAGAGGGTGCCATCGGGCCAGTGCAGCCTCTGCAATTTCCAGATCTGCCACCTGCAGTCTTCACGGTaGCTCCTGCATCTGTCTTCA +
Preference number: 4 (lower is better)
Translates to: SKRVPSGQCSLCNFQICHLQSSR*LLHLSS
Trigger: TGAAGACAGATGCAGGAGCCACCGTGAAGACTGCAG...GTGGCAGATCTGGAAATTGCAGAGGCTGCACTGGCCCGATGGCACCCTCTTGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp TTGTTTTGGAAGTGTGCGGCCTGTGGATGCCGACCAGATTCCCTAAGGGGTTGGAGACGCTGGAGCAGGTaGCGGATGAGGTTCCAAAGC +
Preference number: 4 (lower is better)
Translates to: LFWKCAACGCRPDSLRGWRRWSR*RMRFQS
Trigger: GCTTTGGAACCTCATCCGCCACCTGCTCCAGCGTCT...CCAACCCCTTAGGGAATCTGGTCGGCATCCACAGGCCGCACACTTCCAAAACAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp GTCAATAAAGATACCACGATTGTTTTGGAAGTGTGCGGCCTGTGGATGCCGACCCTGGGTCTGGGCCAGTaGTGGCAGCCATGCTGGAGC +
Preference number: 4 (lower is better)
Translates to: VNKDTTIVLEVCGLWMPTLGLGQ*WQPCWS
Trigger: GCTCCAGCATGGCTGCCACCACTGGCCCAGACCCAG...GGTCGGCATCCACAGGCCGCACACTTCCAAAACAATCGTGGTATCTTTATTGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR TCA 90 bp GCCAGCAAATACACCTTACAACAGATGGGAAGTCCGGCTTCCCAAAGGACAAGCGCCAGCCACAGCTGTTaGGCAGCCTGGGGGAAATCT +
Preference number: 4 (lower is better)
Translates to: ASKYTLQQMGSPASQRTSASHSC*AAWGKS
Trigger: AGATTTCCCCCAGGCTGCTCAACAGCTGTGGCTGGC...GCTTGTCCTTTGGGAAGCCGGACTTCCCATCTGTTGTAAGGTGTATTTGCTGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp AAGCCAGCAAATACACCTTACAACAGATGGGAAGTCCGGCTTCCCAAAGGACAAAGTTGGCACCTGGGCTaGTGGGGCCTGTGTCCCCTG +
Preference number: 4 (lower is better)
Translates to: KPANTPYNRWEVRLPKGQSWHLG*WGLCPL
Trigger: CAGGGGACACAGGCCCCAGCAGCCCAGGTGCCAACT...TTGTCCTTTGGGAAGCCGGACTTCCCATCTGTTGTAAGGTGTATTTGCTGGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp TATACGGGGTTATTACCTGGTGGAGGGCTGGAAGGCAAAGGAACAACTGAGACCTGGAGGGGACAAGGGTaGAGGTGTCACCTTGGGTCC +
Preference number: 4 (lower is better)
Translates to: YTGLLPGGGLEGKGTTETWRGQG*RCHLGS
Trigger: GGACCCAAGGTGACACCTGCACCCTTGTCCCCTCCA...GGTCTCAGTTGTTCCTTTGCCTTCCAGCCCTCCACCAGGTAATAACCCCGTATA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp CTGTGGATGCCGACCAGATTCCCTAAGGGGTTGGGAGTAGAGGGAAGGGGCCGGTGTAGTCGATGGCCTTaGGCAAGACAGCAGATTTAT +
Preference number: 4 (lower is better)
Translates to: LWMPTRFPKGLGVEGRGRCSRWP*ARQQIY
Trigger: ATAAATCTGCTGTCTTGCGCAAGGCCATCGACTACA...CCGGCCCCTTCCCTCTACTCCCAACCCCTTAGGGAATCTGGTCGGCATCCACAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp CCAGTGCAGCCTCTGCAATTTCCAGATCTGCCACTAGAGGTCGGCATGGTCCTGGCGAGGCCAAAGGATTaGAGGTCAGACACAGAAAGG +
Preference number: 4 (lower is better)
Translates to: PVQPLQFPDLPLEVGMVLARPKD*RSDTER
Trigger: CCTTTCTGTGTCTGACCTGCAATCCTTTGGCCTCGC...CAGGACCATGCCGACCTCTAGTGGCAGATCTGGAAATTGCAGAGGCTGCACTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp ACCCTCTGGAAGACCACAGCCAATGACAAAGGTCCTCAAGGGAAAGCTTTGGGGCCAACCGCCGCAGGCTaGTCAGGTCATGTTGGAAAC +
Preference number: 4 (lower is better)
Translates to: TLWKTTANDKGPQGKALGPTAAG*SGHVGN
Trigger: GTTTCCAACATGACCTGAGCAGCCTGCGGCGGTTGG...CCCCAAAGCTTTCCCTTGAGGACCTTTGTCATTGGCTGTGGTCTTCCAGAGGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp GATATACGGGGTTATTACCTGGTGGAGGGCTGGAAGGCAAAGGAACAACTGAGAAGGAGAGTTGGCACCTaGGCTGCTGGGGCCTGTGTC +
Preference number: 4 (lower is better)
Translates to: DIRGYYLVEGWKAKEQLRRRVGT*AAGACV
Trigger: GACACAGGCCCCAGCAGCCCAGGTGCCAACTCTCCT...TCTCAGTTGTTCCTTTGCCTTCCAGCCCTCCACCAGGTAATAACCCCGTATATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp ACCCTCTGGAAGACCACAGCCAATGACAAAGGTCCTCAAGGGAAAGCTTTGGGGCGGCAGGCTAGATGGTaGCTGCTGAGTGTTTCCTGG +
Preference number: 4 (lower is better)
Translates to: TLWKTTANDKGPQGKALGRQARW*LLSVSW
Trigger: CCAGGAAACACTCAGCAGCCACCATCTAGCCTGCCG...CCCCAAAGCTTTCCCTTGAGGACCTTTGTCATTGGCTGTGGTCTTCCAGAGGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp CCTGATTGCTTGTCAGGCTCACCCTCTGGAAGACCACAGCCAATGACAAAGGTCCAGCGGCAGGCTAGATaGTGGCTGCTGAGTGTTTCC +
Preference number: 4 (lower is better)
Translates to: PDCLSGSPSGRPQPMTKVQRQAR*WLLSVS
Trigger: GGAAACACTCAGCAGCCACCATCTAGCCTGCCGCTG...GACCTTTGTCATTGGCTGTGGTCTTCCAGAGGGTGAGCCTGACAAGCAATCAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp GTCAATAAAGATACCACGATTGTTTTGGAAGTGTGCGGCCTGTGGATGCCGACCTGTGCAGGGCAGGGGTaGGCAAGACTCCTGGTGCAG +
Preference number: 4 (lower is better)
Translates to: VNKDTTIVLEVCGLWMPTCAGQG*ARLLVQ
Trigger: CTGCACCAGGAGTCTTGCCCACCCCTGCCCTGCACA...GGTCGGCATCCACAGGCCGCACACTTCCAAAACAATCGTGGTATCTTTATTGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp CCAGTGCAGCCTCTGCAATTTCCAGATCTGCCACTAGAGGTCGGCATGGTCCTGCAACCAAAGGTACTGTaGCCAAGATGGTCCCTCCAC +
Preference number: 4 (lower is better)
Translates to: PVQPLQFPDLPLEVGMVLQPKVL*PRWSLH
Trigger: GTGGAGGGACCATCTTGGCCACAGTACCTTTGGTTG...CAGGACCATGCCGACCTCTAGTGGCAGATCTGGAAATTGCAGAGGCTGCACTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp ACCCTCTGGAAGACCACAGCCAATGACAAAGGTCCTCAAGGGAAAGCTTTGGGGCCAGCTGCGAGTCGGTaGATGGGCAGTTTGTCTGTG +
Preference number: 4 (lower is better)
Translates to: TLWKTTANDKGPQGKALGPAASR*MGSLSV
Trigger: CACAGACAAACTGCCCATCCACCGACTCGCAGCTGG...CCCCAAAGCTTTCCCTTGAGGACCTTTGTCATTGGCTGTGGTCTTCCAGAGGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp AGCAAGAGGGTGCCATCGGGCCAGTGCAGCCTCTGCAATTTCCAGATCTGCCACTCCTGCTTGAGCTTCTaGTTGCTGTGCTGCAAGAAG +
Preference number: 4 (lower is better)
Translates to: SKRVPSGQCSLCNFQICHSCLSF*LLCCKK
Trigger: CTTCTTGCAGCACAGCAACCAGAAGCTCAAGCAGGA...GTGGCAGATCTGGAAATTGCAGAGGCTGCACTGGCCCGATGGCACCCTCTTGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp TCAATAAAGATACCACGATTGTTTTGGAAGTGTGCGGCCTGTGGATGCCGACCATGTGCTAGGCAGGCCTaGCGGGCGCTGCTCAGGAAG +
Preference number: 4 (lower is better)
Translates to: SIKIPRLFWKCAACGCRPCARQA*RALLRK
Trigger: CTTCCTGAGCAGCGCCCGCCAGGCCTGCCTAGCACA...TGGTCGGCATCCACAGGCCGCACACTTCCAAAACAATCGTGGTATCTTTATTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp CCCAAAGGACAAGCCAGGAAAGATAGCAATCAGCTGAGGCAGACATCTGCCTACTCCAGAGCAGAGGCCTaGGGTCCATTGCTGGTACCG +
Preference number: 4 (lower is better)
Translates to: PKGQARKDSNQLRQTSAYSRAEA*GPLLVP
Trigger: CGGTACCAGCAATGGACCCCAGGCCTCTGCTCTGGA...GTAGGCAGATGTCTGCCTCAGCTGATTGCTATCTTTCCTGGCTTGTCCTTTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp AGAGGGTGCCATCGGGCCAGTGCAGCCTCTGCAATTTCCAGATCTGCCACTAGACTGCTCAGGTCATGTTaGAAACCACGCAGCTCCAGA +
Preference number: 4 (lower is better)
Translates to: RGCHRASAASAISRSATRLLRSC*KPRSSR
Trigger: TCTGGAGCTGCGTGGTTTCCAACATGACCTGAGCAG...TCTAGTGGCAGATCTGGAAATTGCAGAGGCTGCACTGGCCCGATGGCACCCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp ACCCTCTGGAAGACCACAGCCAATGACAAAGGTCCTCAAGGGAAAGCTTTGGGGTGCCTCCTTTGCCACTaGAACCTGCCCTCCTCCTCA +
Preference number: 4 (lower is better)
Translates to: TLWKTTANDKGPQGKALGCLLCH*NLPSSS
Trigger: TGAGGAGGAGGGCAGGTTCCAGTGGCAAAGGAGGCA...CCCCAAAGCTTTCCCTTGAGGACCTTTGTCATTGGCTGTGGTCTTCCAGAGGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp AACAGATGGGAAGTCCGGCTTCCCAAAGGACAAGCCAGGAAAGATAGCAATCAGCCGCCATGTGGGCCGTaGCTCCAGCTCAGCTGTAGT +
Preference number: 4 (lower is better)
Translates to: NRWEVRLPKGQARKDSNQPPCGP*LQLSCS
Trigger: ACTACAGCTGAGCTGGAGCCACGGCCCACATGGCGG...CTGATTGCTATCTTTCCTGGCTTGTCCTTTGGGAAGCCGGACTTCCCATCTGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
3UTR CAA 72 bp AGATCTGCCACTAGAGGTCGGCATGGTCCTGATTGCTaGTCAGGCTCACCCTCTGGAAGACCACAGCCAATG +
Preference number: 4 (lower is better)
Translates to: RSATRGRHGPDC*SGSPSGRPQPM
Trigger: CATTGGCTGTGGTCTTCCAGAGGGTGAGCCTGACAAGCAATCAGGACCATGCCGACCTCTAGTGGCAGATCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR TCA 90 bp GATATACGGGGTTATTACCTGGTGGAGGGCTGGAAGGCAAAGGAACAACTGAGAGCACTGGCTCCTCTTTaGTCCCAGGCCCAGGGGAAA +
Preference number: 4 (lower is better)
Translates to: DIRGYYLVEGWKAKEQLRALAPL*SQAQGK
Trigger: TTTCCCCTGGGCCTGGGATCAAAGAGGAGCCAGTGC...TCTCAGTTGTTCCTTTGCCTTCCAGCCCTCCACCAGGTAATAACCCCGTATATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR TCA 90 bp AACAGATGGGAAGTCCGGCTTCCCAAAGGACAAGCCAGGAAAGATAGCAATCAGGGAGCAGGTGGCGGATaGGGTTCCAAAGCAGACTGC +
Preference number: 4 (lower is better)
Translates to: NRWEVRLPKGQARKDSNQGAGGG*GSKADC
Trigger: GCAGTCTGCTTTGGAACCTCATCCGCCACCTGCTCC...CTGATTGCTATCTTTCCTGGCTTGTCCTTTGGGAAGCCGGACTTCCCATCTGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp CCAAGCCAGCAAATACACCTTACAACAGATGGGAAGTCCGGCTTCCCAAAGGACTGGCATTGTGGGCTGTaGGCTTCTCACCACGGCTCT +
Preference number: 4 (lower is better)
Translates to: PSQQIHLTTDGKSGFPKDWHCGL*ASHHGS
Trigger: AGAGCCGTGGTGAGAAGCGCACAGCCCACAATGCCA...GTCCTTTGGGAAGCCGGACTTCCCATCTGTTGTAAGGTGTATTTGCTGGCTTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp GGTGCCTACAGAGCAAGAGGGTGCCATCGGGCCAGTGCAGCCTCTGCAATTTCCAGATTTATTCAGCTTTaGTTCAGTGCCCACCACCAG +
Preference number: 4 (lower is better)
Translates to: GAYRARGCHRASAASAISRFIQL*FSAHHQ
Trigger: CTGGTGGTGGGCACTGAAGCAAAGCTGAATAAATCT...GGAAATTGCAGAGGCTGCACTGGCCCGATGGCACCCTCTTGCTCTGTAGGCACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp CCCAAAGGACAAGCCAGGAAAGATAGCAATCAGCTGAGGCAGACATCTGCCTACCTGTGCCTCCTCCACTaGCACAAGCTGACACCAGGT +
Preference number: 4 (lower is better)
Translates to: PKGQARKDSNQLRQTSAYLCLLH*HKLTPG
Trigger: ACCTGGTGTCAGCTTGTGGCAGTGGAGGAGGCACAG...GTAGGCAGATGTCTGCCTCAGCTGATTGCTATCTTTCCTGGCTTGTCCTTTGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp TTGTTTTGGAAGTGTGCGGCCTGTGGATGCCGACCAGATTCCCTAAGGGGTTGGAAACGTGTCAAGAAGTaGAGGGCTCTTGGGAGGCTG +
Preference number: 4 (lower is better)
Translates to: LFWKCAACGCRPDSLRGWKRVKK*RALGRL
Trigger: CAGCCTCCCAAGAGCCCTGCACTTCTTGACACGTTT...CCAACCCCTTAGGGAATCTGGTCGGCATCCACAGGCCGCACACTTCCAAAACAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp CCCAAAGGACAAGCCAGGAAAGATAGCAATCAGCTGAGGCAGACATCTGCCTACGAAGCTGGTGACTGCTaGCGCTGCCACAGACTGGTA +
Preference number: 4 (lower is better)
Translates to: PKGQARKDSNQLRQTSAYEAGDC*RCHRLV
Trigger: TACCAGTCTGTGGCAGCGGCAGCAGTCACCAGCTTC...GTAGGCAGATGTCTGCCTCAGCTGATTGCTATCTTTCCTGGCTTGTCCTTTGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp AACAGATGGGAAGTCCGGCTTCCCAAAGGACAAGCCAGGAAAGATAGCAATCAGGGGCAGATAGCAGGATaGCAACAGCAGGGCCTCGGT +
Preference number: 4 (lower is better)
Translates to: NRWEVRLPKGQARKDSNQGQIAG*QQQGLG
Trigger: ACCGAGGCCCTGCTGTTGGCATCCTGCTATCTGCCC...CTGATTGCTATCTTTCCTGGCTTGTCCTTTGGGAAGCCGGACTTCCCATCTGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp GTCAATAAAGATACCACGATTGTTTTGGAAGTGTGCGGCCTGTGGATGCCGACCTGGGAGGCCAAGCTTTaGACCTGGGTGTGCAGGGCA +
Preference number: 4 (lower is better)
Translates to: VNKDTTIVLEVCGLWMPTWEAKL*TWVCRA
Trigger: TGCCCTGCACACCCAGGTCCAAAGCTTGGCCTCCCA...GGTCGGCATCCACAGGCCGCACACTTCCAAAACAATCGTGGTATCTTTATTGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp CCCAAAGGACAAGCCAGGAAAGATAGCAATCAGCTGAGGCAGACATCTGCCTACGTACTGTGGCCAAGATaGTCCCTCCACTCACCAGGG +
Preference number: 4 (lower is better)
Translates to: PKGQARKDSNQLRQTSAYVLWPR*SLHSPG
Trigger: CCCTGGTGAGTGGAGGGACCATCTTGGCCACAGTAC...GTAGGCAGATGTCTGCCTCAGCTGATTGCTATCTTTCCTGGCTTGTCCTTTGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp GCCAGCAAATACACCTTACAACAGATGGGAAGTCCGGCTTCCCAAAGGACAAGCCCAGCTGCGAGTCGGTaGATGGGCAGTTTGTCTGTG +
Preference number: 4 (lower is better)
Translates to: ASKYTLQQMGSPASQRTSPAASR*MGSLSV
Trigger: CACAGACAAACTGCCCATCCACCGACTCGCAGCTGG...GCTTGTCCTTTGGGAAGCCGGACTTCCCATCTGTTGTAAGGTGTATTTGCTGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp AGAGGGTGCCATCGGGCCAGTGCAGCCTCTGCAATTTCCAGATCTGCCACTAGATTCTCAATGGCATTGTaGGCTGTGCGCTTCTCACCA +
Preference number: 4 (lower is better)
Translates to: RGCHRASAASAISRSATRFSMAL*AVRFSP
Trigger: TGGTGAGAAGCGCACAGCCCACAATGCCATTGAGAA...TCTAGTGGCAGATCTGGAAATTGCAGAGGCTGCACTGGCCCGATGGCACCCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp CCAGTGCAGCCTCTGCAATTTCCAGATCTGCCACTAGAGGTCGGCATGGTCCTGTCCTGCTTGAGCTTCTaGTTGCTGTGCTGCAAGAAG +
Preference number: 4 (lower is better)
Translates to: PVQPLQFPDLPLEVGMVLSCLSF*LLCCKK
Trigger: CTTCTTGCAGCACAGCAACCAGAAGCTCAAGCAGGA...CAGGACCATGCCGACCTCTAGTGGCAGATCTGGAAATTGCAGAGGCTGCACTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp TATACGGGGTTATTACCTGGTGGAGGGCTGGAAGGCAAAGGAACAACTGAGACCAGACGCTGGAGCAGGTaGCGGATGAGGTTCCAAAGC +
Preference number: 4 (lower is better)
Translates to: YTGLLPGGGLEGKGTTETRRWSR*RMRFQS
Trigger: GCTTTGGAACCTCATCCGCCACCTGCTCCAGCGTCT...GGTCTCAGTTGTTCCTTTGCCTTCCAGCCCTCCACCAGGTAATAACCCCGTATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp CCTGATTGCTTGTCAGGCTCACCCTCTGGAAGACCACAGCCAATGACAAAGGTCCTGTGTACTTGCCCATaGCATGCAGCTGGTGCAGCT +
Preference number: 4 (lower is better)
Translates to: PDCLSGSPSGRPQPMTKVLCTCP*HAAGAA
Trigger: AGCTGCACCAGCTGCATGCCATGGGCAAGTACACAG...GACCTTTGTCATTGGCTGTGGTCTTCCAGAGGGTGAGCCTGACAAGCAATCAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp CGGGGTTATTACCTGGTGGAGGGCTGGAAGGCAAAGGAACAACTGAGACCATCAGAAGTGCAGGGCTCTTaGGAGGCTGGTTTTGACCCT +
Preference number: 4 (lower is better)
Translates to: RGYYLVEGWKAKEQLRPSEVQGS*EAGFDP
Trigger: AGGGTCAAAACCAGCCTCCCAAGAGCCCTGCACTTC...TGATGGTCTCAGTTGTTCCTTTGCCTTCCAGCCCTCCACCAGGTAATAACCCCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp AAGTCAATAAAGATACCACGATTGTTTTGGAAGTGTGCGGCCTGTGGATGCCGAGGCAGAGCCACTGCATaGCAAGAGGCACCGAGCCGC +
Preference number: 4 (lower is better)
Translates to: KSIKIPRLFWKCAACGCRGRATA*QEAPSR
Trigger: GCGGCTCGGTGCCTCTTGCCATGCAGTGGCTCTGCC...TCGGCATCCACAGGCCGCACACTTCCAAAACAATCGTGGTATCTTTATTGACTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp CCAAGCCAGCAAATACACCTTACAACAGATGGGAAGTCCGGCTTCCCAAAGGACTCCCGCCTCAGCCAGTaGATCACCACAGCTGTCAGT +
Preference number: 4 (lower is better)
Translates to: PSQQIHLTTDGKSGFPKDSRLSQ*ITTAVS
Trigger: ACTGACAGCTGTGGTGATCCACTGGCTGAGGCGGGA...GTCCTTTGGGAAGCCGGACTTCCCATCTGTTGTAAGGTGTATTTGCTGGCTTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp GATATACGGGGTTATTACCTGGTGGAGGGCTGGAAGGCAAAGGAACAACTGAGACCCGCAGGTACCCACTaGCCTTCTCACAGATGGCCA +
Preference number: 4 (lower is better)
Translates to: DIRGYYLVEGWKAKEQLRPAGTH*PSHRWP
Trigger: TGGCCATCTGTGAGAAGGCCAGTGGGTACCTGCGGG...TCTCAGTTGTTCCTTTGCCTTCCAGCCCTCCACCAGGTAATAACCCCGTATATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp TCAATAAAGATACCACGATTGTTTTGGAAGTGTGCGGCCTGTGGATGCCGACCACCGCCATGTGGGCCGTaGCTCCAGCTCAGCTGTAGT +
Preference number: 4 (lower is better)
Translates to: SIKIPRLFWKCAACGCRPPPCGP*LQLSCS
Trigger: ACTACAGCTGAGCTGGAGCCACGGCCCACATGGCGG...TGGTCGGCATCCACAGGCCGCACACTTCCAAAACAATCGTGGTATCTTTATTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp AACAGATGGGAAGTCCGGCTTCCCAAAGGACAAGCCAGGAAAGATAGCAATCAGTGGCATTGTGGGCTGTaGGCTTCTCACCACGGCTCT +
Preference number: 4 (lower is better)
Translates to: NRWEVRLPKGQARKDSNQWHCGL*ASHHGS
Trigger: AGAGCCGTGGTGAGAAGCGCACAGCCCACAATGCCA...CTGATTGCTATCTTTCCTGGCTTGTCCTTTGGGAAGCCGGACTTCCCATCTGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp CCTGATTGCTTGTCAGGCTCACCCTCTGGAAGACCACAGCCAATGACAAAGGTCAGGGTCAGGTTCTCCTaGTTGAGCTTCTGGTTGCTG +
Preference number: 4 (lower is better)
Translates to: PDCLSGSPSGRPQPMTKVRVRFS*LSFWLL
Trigger: CAGCAACCAGAAGCTCAAGCAGGAGAACCTGACCCT...GACCTTTGTCATTGGCTGTGGTCTTCCAGAGGGTGAGCCTGACAAGCAATCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp GATATACGGGGTTATTACCTGGTGGAGGGCTGGAAGGCAAAGGAACAACTGAGACTGTGCCTCCTCCACTaGCACAAGCTGACACCAGGT +
Preference number: 4 (lower is better)
Translates to: DIRGYYLVEGWKAKEQLRLCLLH*HKLTPG
Trigger: ACCTGGTGTCAGCTTGTGGCAGTGGAGGAGGCACAG...TCTCAGTTGTTCCTTTGCCTTCCAGCCCTCCACCAGGTAATAACCCCGTATATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp AACAGATGGGAAGTCCGGCTTCCCAAAGGACAAGCCAGGAAAGATAGCAATCAGTCTCTGCCTCCAGCATaGTGCGCCCAGAACTACGGT +
Preference number: 4 (lower is better)
Translates to: NRWEVRLPKGQARKDSNQSLPPA*CAQNYG
Trigger: ACCGTAGTTCTGGGCGCAGCATGCTGGAGGCAGAGA...CTGATTGCTATCTTTCCTGGCTTGTCCTTTGGGAAGCCGGACTTCCCATCTGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp CCCAAAGGACAAGCCAGGAAAGATAGCAATCAGCTGAGGCAGACATCTGCCTACGTCCTCCTGTGTACTTaGCCATGGCATGCAGCTGGT +
Preference number: 4 (lower is better)
Translates to: PKGQARKDSNQLRQTSAYVLLCT*PWHAAG
Trigger: ACCAGCTGCATGCCATGGGCAAGTACACAGGAGGAC...GTAGGCAGATGTCTGCCTCAGCTGATTGCTATCTTTCCTGGCTTGTCCTTTGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp AAGCCAGCAAATACACCTTACAACAGATGGGAAGTCCGGCTTCCCAAAGGACAACCCTCCTCCTCAGACTaGGATCCAGGAGCTGGTGTG +
Preference number: 4 (lower is better)
Translates to: KPANTPYNRWEVRLPKGQPSSSD*DPGAGV
Trigger: CACACCAGCTCCTGGATCGCAGTCTGAGGAGGAGGG...TTGTCCTTTGGGAAGCCGGACTTCCCATCTGTTGTAAGGTGTATTTGCTGGCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp GATATACGGGGTTATTACCTGGTGGAGGGCTGGAAGGCAAAGGAACAACTGAGATTTGCCACTGGAACCTaGCCTCCTCCTCAGACTGCG +
Preference number: 4 (lower is better)
Translates to: DIRGYYLVEGWKAKEQLRFATGT*PPPQTA
Trigger: CGCAGTCTGAGGAGGAGGGCAGGTTCCAGTGGCAAA...TCTCAGTTGTTCCTTTGCCTTCCAGCCCTCCACCAGGTAATAACCCCGTATATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp AACAGATGGGAAGTCCGGCTTCCCAAAGGACAAGCCAGGAAAGATAGCAATCAGCAGCGGCAGGCTAGATaGTGGCTGCTGAGTGTTTCC +
Preference number: 4 (lower is better)
Translates to: NRWEVRLPKGQARKDSNQQRQAR*WLLSVS
Trigger: GGAAACACTCAGCAGCCACCATCTAGCCTGCCGCTG...CTGATTGCTATCTTTCCTGGCTTGTCCTTTGGGAAGCCGGACTTCCCATCTGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp CCCAAAGGACAAGCCAGGAAAGATAGCAATCAGCTGAGGCAGACATCTGCCTACACAACTGGGACCTGCTaGACCTGTGAGGTCACAGTG +
Preference number: 4 (lower is better)
Translates to: PKGQARKDSNQLRQTSAYTTGTC*TCEVTV
Trigger: CACTGTGACCTCACAGGTCCAGCAGGTCCCAGTTGT...GTAGGCAGATGTCTGCCTCAGCTGATTGCTATCTTTCCTGGCTTGTCCTTTGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp ACCCTCTGGAAGACCACAGCCAATGACAAAGGTCCTCAAGGGAAAGCTTTGGGGCAACCAAAGGTACTGTaGCCAAGATGGTCCCTCCAC +
Preference number: 4 (lower is better)
Translates to: TLWKTTANDKGPQGKALGQPKVL*PRWSLH
Trigger: GTGGAGGGACCATCTTGGCCACAGTACCTTTGGTTG...CCCCAAAGCTTTCCCTTGAGGACCTTTGTCATTGGCTGTGGTCTTCCAGAGGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp AAGTCAATAAAGATACCACGATTGTTTTGGAAGTGTGCGGCCTGTGGATGCCGAGACAAGGGGCTACTCTaGGAGGGTGAGCCGGCGTCT +
Preference number: 4 (lower is better)
Translates to: KSIKIPRLFWKCAACGCRDKGLL*EGEPAS
Trigger: AGACGCCGGCTCACCCTCCCAGAGTAGCCCCTTGTC...TCGGCATCCACAGGCCGCACACTTCCAAAACAATCGTGGTATCTTTATTGACTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp CCAAGCCAGCAAATACACCTTACAACAGATGGGAAGTCCGGCTTCCCAAAGGACCTGTGTACTTGCCCATaGCATGCAGCTGGTGCAGCT +
Preference number: 4 (lower is better)
Translates to: PSQQIHLTTDGKSGFPKDLCTCP*HAAGAA
Trigger: AGCTGCACCAGCTGCATGCCATGGGCAAGTACACAG...GTCCTTTGGGAAGCCGGACTTCCCATCTGTTGTAAGGTGTATTTGCTGGCTTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp GTCAATAAAGATACCACGATTGTTTTGGAAGTGTGCGGCCTGTGGATGCCGACCTCCCGCCTCAGCCAGTaGATCACCACAGCTGTCAGT +
Preference number: 4 (lower is better)
Translates to: VNKDTTIVLEVCGLWMPTSRLSQ*ITTAVS
Trigger: ACTGACAGCTGTGGTGATCCACTGGCTGAGGCGGGA...GGTCGGCATCCACAGGCCGCACACTTCCAAAACAATCGTGGTATCTTTATTGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR TCA 90 bp CCAAGCCAGCAAATACACCTTACAACAGATGGGAAGTCCGGCTTCCCAAAGGACAGCTGTCAGCAGCAGTaGGTCTGCCTTGATGAAGTG +
Preference number: 4 (lower is better)
Translates to: PSQQIHLTTDGKSGFPKDSCQQQ*VCLDEV
Trigger: CACTTCATCAAGGCAGACTCACTGCTGCTGACAGCT...GTCCTTTGGGAAGCCGGACTTCCCATCTGTTGTAAGGTGTATTTGCTGGCTTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR TCA 90 bp GCCAGCAAATACACCTTACAACAGATGGGAAGTCCGGCTTCCCAAAGGACAAGCTCAGGTTCTCCTGCTTaGGCTTCTGGTTGCTGTGCT +
Preference number: 4 (lower is better)
Translates to: ASKYTLQQMGSPASQRTSSGSPA*ASGCCA
Trigger: AGCACAGCAACCAGAAGCTCAAGCAGGAGAACCTGA...GCTTGTCCTTTGGGAAGCCGGACTTCCCATCTGTTGTAAGGTGTATTTGCTGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR TCA 90 bp AAGTCAATAAAGATACCACGATTGTTTTGGAAGTGTGCGGCCTGTGGATGCCGAGCCAGCCACAGCTGTTaGGCAGCCTGGGGGAAATCT +
Preference number: 4 (lower is better)
Translates to: KSIKIPRLFWKCAACGCRASHSC*AAWGKS
Trigger: AGATTTCCCCCAGGCTGCTCAACAGCTGTGGCTGGC...TCGGCATCCACAGGCCGCACACTTCCAAAACAATCGTGGTATCTTTATTGACTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR TCA 90 bp CCAAGCCAGCAAATACACCTTACAACAGATGGGAAGTCCGGCTTCCCAAAGGACATATCCAAGGGCATCTaGGAACTCCCTGTCTCCGTC +
Preference number: 4 (lower is better)
Translates to: PSQQIHLTTDGKSGFPKDISKGI*ELPVSV
Trigger: GACGGAGACAGGGAGTTCTCAGATGCCCTTGGATAT...GTCCTTTGGGAAGCCGGACTTCCCATCTGTTGTAAGGTGTATTTGCTGGCTTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR TCA 90 bp GATATACGGGGTTATTACCTGGTGGAGGGCTGGAAGGCAAAGGAACAACTGAGACAGCCATGCTGGAGCTaGCAGAGAAACTGCAAGCAG +
Preference number: 4 (lower is better)
Translates to: DIRGYYLVEGWKAKEQLRQPCWS*QRNCKQ
Trigger: CTGCTTGCAGTTTCTCTGTCAGCTCCAGCATGGCTG...TCTCAGTTGTTCCTTTGCCTTCCAGCCCTCCACCAGGTAATAACCCCGTATATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp CCAAGCCAGCAAATACACCTTACAACAGATGGGAAGTCCGGCTTCCCAAAGGACAGTACAACTGGGACCTaGTGGACCTGTGAGGTCACA +
Preference number: 4 (lower is better)
Translates to: PSQQIHLTTDGKSGFPKDSTTGT*WTCEVT
Trigger: TGTGACCTCACAGGTCCAGCAGGTCCCAGTTGTACT...GTCCTTTGGGAAGCCGGACTTCCCATCTGTTGTAAGGTGTATTTGCTGGCTTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp GCCAGCAAATACACCTTACAACAGATGGGAAGTCCGGCTTCCCAAAGGACAAGCGCGAGGCCAAAGGATTaGAGGTCAGACACAGAAAGG +
Preference number: 4 (lower is better)
Translates to: ASKYTLQQMGSPASQRTSARPKD*RSDTER
Trigger: CCTTTCTGTGTCTGACCTGCAATCCTTTGGCCTCGC...GCTTGTCCTTTGGGAAGCCGGACTTCCCATCTGTTGTAAGGTGTATTTGCTGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp CCAAGCCAGCAAATACACCTTACAACAGATGGGAAGTCCGGCTTCCCAAAGGACAAACGTGTCAAGAAGTaGAGGGCTCTTGGGAGGCTG +
Preference number: 4 (lower is better)
Translates to: PSQQIHLTTDGKSGFPKDKRVKK*RALGRL
Trigger: CAGCCTCCCAAGAGCCCTGCACTTCTTGACACGTTT...GTCCTTTGGGAAGCCGGACTTCCCATCTGTTGTAAGGTGTATTTGCTGGCTTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp AAGTCAATAAAGATACCACGATTGTTTTGGAAGTGTGCGGCCTGTGGATGCCGAAGGCCTGGCGGGCGCTaGTCAGGAAGAAACGTGTCA +
Preference number: 4 (lower is better)
Translates to: KSIKIPRLFWKCAACGCRRPGGR*SGRNVS
Trigger: TGACACGTTTCTTCCTGAGCAGCGCCCGCCAGGCCT...TCGGCATCCACAGGCCGCACACTTCCAAAACAATCGTGGTATCTTTATTGACTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp AAGCCAGCAAATACACCTTACAACAGATGGGAAGTCCGGCTTCCCAAAGGACAAGGTCTCTCAGTGTCCTaGAGCACCTGGGGGATATGC +
Preference number: 4 (lower is better)
Translates to: KPANTPYNRWEVRLPKGQGLSVS*STWGIC
Trigger: GCATATCCCCCAGGTGCTGCAGGACACTGAGAGACC...TTGTCCTTTGGGAAGCCGGACTTCCCATCTGTTGTAAGGTGTATTTGCTGGCTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp AAGCCAGCAAATACACCTTACAACAGATGGGAAGTCCGGCTTCCCAAAGGACAACCAACCGCCGCAGGCTaGTCAGGTCATGTTGGAAAC +
Preference number: 4 (lower is better)
Translates to: KPANTPYNRWEVRLPKGQPTAAG*SGHVGN
Trigger: GTTTCCAACATGACCTGAGCAGCCTGCGGCGGTTGG...TTGTCCTTTGGGAAGCCGGACTTCCCATCTGTTGTAAGGTGTATTTGCTGGCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp AACAGATGGGAAGTCCGGCTTCCCAAAGGACAAGCCAGGAAAGATAGCAATCAGGATGGTGAGTGGCACTaGCTCCTCTTTGATCCCAGG +
Preference number: 4 (lower is better)
Translates to: NRWEVRLPKGQARKDSNQDGEWH*LLFDPR
Trigger: CCTGGGATCAAAGAGGAGCCAGTGCCACTCACCATC...CTGATTGCTATCTTTCCTGGCTTGTCCTTTGGGAAGCCGGACTTCCCATCTGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp AACAGATGGGAAGTCCGGCTTCCCAAAGGACAAGCCAGGAAAGATAGCAATCAGAGCGGATGTAGTCGATaGCCTTGCGCAAGACAGCAG +
Preference number: 4 (lower is better)
Translates to: NRWEVRLPKGQARKDSNQSGCSR*PCARQQ
Trigger: CTGCTGTCTTGCGCAAGGCCATCGACTACATCCGCT...CTGATTGCTATCTTTCCTGGCTTGTCCTTTGGGAAGCCGGACTTCCCATCTGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp GATATACGGGGTTATTACCTGGTGGAGGGCTGGAAGGCAAAGGAACAACTGAGAGAAGTGCAGGGCTCTTaGGAGGCTGGTTTTGACCCT +
Preference number: 4 (lower is better)
Translates to: DIRGYYLVEGWKAKEQLREVQGS*EAGFDP
Trigger: AGGGTCAAAACCAGCCTCCCAAGAGCCCTGCACTTC...TCTCAGTTGTTCCTTTGCCTTCCAGCCCTCCACCAGGTAATAACCCCGTATATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp AGGAAAGATAGCAATCAGCTGAGGCAGACATCTGCCTACCCAGATAAACAAAACCTTGGCCACTGGGTCTaGGCCAGTGGTGGCAGCCAT +
Preference number: 4 (lower is better)
Translates to: RKDSNQLRQTSAYPDKQNLGHWV*ASGGSH
Trigger: ATGGCTGCCACCACTGGCCCAGACCCAGTGGCCAAG...GTTTTGTTTATCTGGGTAGGCAGATGTCTGCCTCAGCTGATTGCTATCTTTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp GCCAGCAAATACACCTTACAACAGATGGGAAGTCCGGCTTCCCAAAGGACAAGCACAGGAGCAGCTGCATaGCCTTGTCAATGGAACTGC +
Preference number: 4 (lower is better)
Translates to: ASKYTLQQMGSPASQRTSTGAAA*PCQWNC
Trigger: GCAGTTCCATTGACAAGGCCATGCAGCTGCTCCTGT...GCTTGTCCTTTGGGAAGCCGGACTTCCCATCTGTTGTAAGGTGTATTTGCTGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp TATACGGGGTTATTACCTGGTGGAGGGCTGGAAGGCAAAGGAACAACTGAGACCCTGCTCAGGTCATGTTaGAAACCACGCAGCTCCAGA +
Preference number: 4 (lower is better)
Translates to: YTGLLPGGGLEGKGTTETLLRSC*KPRSSR
Trigger: TCTGGAGCTGCGTGGTTTCCAACATGACCTGAGCAG...GGTCTCAGTTGTTCCTTTGCCTTCCAGCCCTCCACCAGGTAATAACCCCGTATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR TCA 90 bp CCCAAAGGACAAGCCAGGAAAGATAGCAATCAGCTGAGGCAGACATCTGCCTACCCACCACCAGGTCTTTaGGCTCCACAATCTTGTCAT +
Preference number: 4 (lower is better)
Translates to: PKGQARKDSNQLRQTSAYPPPGL*APQSCH
Trigger: ATGACAAGATTGTGGAGCTCAAAGACCTGGTGGTGG...GTAGGCAGATGTCTGCCTCAGCTGATTGCTATCTTTCCTGGCTTGTCCTTTGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp CCCAAAGGACAAGCCAGGAAAGATAGCAATCAGCTGAGGCAGACATCTGCCTACTTGATGAAGTGTGGCTaGAGTACAACTGGGACCTGC +
Preference number: 4 (lower is better)
Translates to: PKGQARKDSNQLRQTSAYLMKCG*STTGTC
Trigger: GCAGGTCCCAGTTGTACTGCAGCCACACTTCATCAA...GTAGGCAGATGTCTGCCTCAGCTGATTGCTATCTTTCCTGGCTTGTCCTTTGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp GATATACGGGGTTATTACCTGGTGGAGGGCTGGAAGGCAAAGGAACAACTGAGACTTCACGGTGGCTCCTaGATCTGTCTTCACAGCTGT +
Preference number: 4 (lower is better)
Translates to: DIRGYYLVEGWKAKEQLRLHGGS*ICLHSC
Trigger: ACAGCTGTGAAGACAGATGCAGGAGCCACCGTGAAG...TCTCAGTTGTTCCTTTGCCTTCCAGCCCTCCACCAGGTAATAACCCCGTATATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp AAGTCAATAAAGATACCACGATTGTTTTGGAAGTGTGCGGCCTGTGGATGCCGATCTCTGCCTCCAGCATaGTGCGCCCAGAACTACGGT +
Preference number: 4 (lower is better)
Translates to: KSIKIPRLFWKCAACGCRSLPPA*CAQNYG
Trigger: ACCGTAGTTCTGGGCGCAGCATGCTGGAGGCAGAGA...TCGGCATCCACAGGCCGCACACTTCCAAAACAATCGTGGTATCTTTATTGACTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp AGGAAAGATAGCAATCAGCTGAGGCAGACATCTGCCTACCCAGATAAACAAAACGACCCTCAGGGCCGCTaGCACATAGATCTCTGCCAG +
Preference number: 4 (lower is better)
Translates to: RKDSNQLRQTSAYPDKQNDPQGR*HIDLCQ
Trigger: CTGGCAGAGATCTATGTGGCAGCGGCCCTGAGGGTC...GTTTTGTTTATCTGGGTAGGCAGATGTCTGCCTCAGCTGATTGCTATCTTTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp CCAGTGCAGCCTCTGCAATTTCCAGATCTGCCACTAGAGGTCGGCATGGTCCTGCAGCTATTTAGCAACTaGAGATATCCAAGGGCATCT +
Preference number: 4 (lower is better)
Translates to: PVQPLQFPDLPLEVGMVLQLFSN*RYPRAS
Trigger: AGATGCCCTTGGATATCTGCAGTTGCTAAATAGCTG...CAGGACCATGCCGACCTCTAGTGGCAGATCTGGAAATTGCAGAGGCTGCACTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp AAGTCAATAAAGATACCACGATTGTTTTGGAAGTGTGCGGCCTGTGGATGCCGAGGTCTCTCAGTGTCCTaGAGCACCTGGGGGATATGC +
Preference number: 4 (lower is better)
Translates to: KSIKIPRLFWKCAACGCRGLSVS*STWGIC
Trigger: GCATATCCCCCAGGTGCTGCAGGACACTGAGAGACC...TCGGCATCCACAGGCCGCACACTTCCAAAACAATCGTGGTATCTTTATTGACTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp AAGCCAGCAAATACACCTTACAACAGATGGGAAGTCCGGCTTCCCAAAGGACAACCATCAGCCGAGCTGTaGCCTCATGTAGGAATACCC +
Preference number: 4 (lower is better)
Translates to: KPANTPYNRWEVRLPKGQPSAEL*PHVGIP
Trigger: GGGTATTCCTACATGAGGCCACAGCTCGGCTGATGG...TTGTCCTTTGGGAAGCCGGACTTCCCATCTGTTGTAAGGTGTATTTGCTGGCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR TCA 90 bp TCAATAAAGATACCACGATTGTTTTGGAAGTGTGCGGCCTGTGGATGCCGACCATCAGGTTCTCCTGCTTaGGCTTCTGGTTGCTGTGCT +
Preference number: 4 (lower is better)
Translates to: SIKIPRLFWKCAACGCRPSGSPA*ASGCCA
Trigger: AGCACAGCAACCAGAAGCTCAAGCAGGAGAACCTGA...TGGTCGGCATCCACAGGCCGCACACTTCCAAAACAATCGTGGTATCTTTATTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR TCA 90 bp GCCAGCAAATACACCTTACAACAGATGGGAAGTCCGGCTTCCCAAAGGACAAGCCACCAGGTCCTTCAGTaGTTTGCTTTTGTGTGCACT +
Preference number: 4 (lower is better)
Translates to: ASKYTLQQMGSPASQRTSHQVLQ*FAFVCT
Trigger: AGTGCACACAAAAGCAAATCACTGAAGGACCTGGTG...GCTTGTCCTTTGGGAAGCCGGACTTCCCATCTGTTGTAAGGTGTATTTGCTGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp AAGCCAGCAAATACACCTTACAACAGATGGGAAGTCCGGCTTCCCAAAGGACAACTTCACGGTGGCTCCTaGATCTGTCTTCACAGCTGT +
Preference number: 4 (lower is better)
Translates to: KPANTPYNRWEVRLPKGQLHGGS*ICLHSC
Trigger: ACAGCTGTGAAGACAGATGCAGGAGCCACCGTGAAG...TTGTCCTTTGGGAAGCCGGACTTCCCATCTGTTGTAAGGTGTATTTGCTGGCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp TCAATAAAGATACCACGATTGTTTTGGAAGTGTGCGGCCTGTGGATGCCGACCAAGGGTCAGGTTCTCCTaGTTGAGCTTCTGGTTGCTG +
Preference number: 4 (lower is better)
Translates to: SIKIPRLFWKCAACGCRPRVRFS*LSFWLL
Trigger: CAGCAACCAGAAGCTCAAGCAGGAGAACCTGACCCT...TGGTCGGCATCCACAGGCCGCACACTTCCAAAACAATCGTGGTATCTTTATTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp TTGTTTTGGAAGTGTGCGGCCTGTGGATGCCGACCAGATTCCCTAAGGGGTTGGGGTCCTTCAGTGATTTaGTTTTGTGTGCACTTCGTA +
Preference number: 4 (lower is better)
Translates to: LFWKCAACGCRPDSLRGWGPSVI*FCVHFV
Trigger: TACGAAGTGCACACAAAAGCAAATCACTGAAGGACC...CCAACCCCTTAGGGAATCTGGTCGGCATCCACAGGCCGCACACTTCCAAAACAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp AACAGATGGGAAGTCCGGCTTCCCAAAGGACAAGCCAGGAAAGATAGCAATCAGGATCTCTGCCAGTGTTaGCATGGAGATAGCATCTCC +
Preference number: 4 (lower is better)
Translates to: NRWEVRLPKGQARKDSNQDLCQC*HGDSIS
Trigger: GGAGATGCTATCTCCATGGCAACACTGGCAGAGATC...CTGATTGCTATCTTTCCTGGCTTGTCCTTTGGGAAGCCGGACTTCCCATCTGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp AGGAAAGATAGCAATCAGCTGAGGCAGACATCTGCCTACCCAGATAAACAAAACGAAGCTGGTGACTGCTaGCGCTGCCACAGACTGGTA +
Preference number: 4 (lower is better)
Translates to: RKDSNQLRQTSAYPDKQNEAGDC*RCHRLV
Trigger: TACCAGTCTGTGGCAGCGGCAGCAGTCACCAGCTTC...GTTTTGTTTATCTGGGTAGGCAGATGTCTGCCTCAGCTGATTGCTATCTTTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp GATATACGGGGTTATTACCTGGTGGAGGGCTGGAAGGCAAAGGAACAACTGAGATGCCTTGATGAAGTGTaGCTGCAGTACAACTGGGAC +
Preference number: 4 (lower is better)
Translates to: DIRGYYLVEGWKAKEQLRCLDEV*LQYNWD
Trigger: GTCCCAGTTGTACTGCAGCCACACTTCATCAAGGCA...TCTCAGTTGTTCCTTTGCCTTCCAGCCCTCCACCAGGTAATAACCCCGTATATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp GATATACGGGGTTATTACCTGGTGGAGGGCTGGAAGGCAAAGGAACAACTGAGATTCTCAATGGCATTGTaGGCTGTGCGCTTCTCACCA +
Preference number: 4 (lower is better)
Translates to: DIRGYYLVEGWKAKEQLRFSMAL*AVRFSP
Trigger: TGGTGAGAAGCGCACAGCCCACAATGCCATTGAGAA...TCTCAGTTGTTCCTTTGCCTTCCAGCCCTCCACCAGGTAATAACCCCGTATATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR TCA 90 bp GATATACGGGGTTATTACCTGGTGGAGGGCTGGAAGGCAAAGGAACAACTGAGACACCAGGTCCTTCAGTaGTTTGCTTTTGTGTGCACT +
Preference number: 4 (lower is better)
Translates to: DIRGYYLVEGWKAKEQLRHQVLQ*FAFVCT
Trigger: AGTGCACACAAAAGCAAATCACTGAAGGACCTGGTG...TCTCAGTTGTTCCTTTGCCTTCCAGCCCTCCACCAGGTAATAACCCCGTATATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp TATACGGGGTTATTACCTGGTGGAGGGCTGGAAGGCAAAGGAACAACTGAGACCAGATTTATTCAGCTTTaGTTCAGTGCCCACCACCAG +
Preference number: 4 (lower is better)
Translates to: YTGLLPGGGLEGKGTTETRFIQL*FSAHHQ
Trigger: CTGGTGGTGGGCACTGAAGCAAAGCTGAATAAATCT...GGTCTCAGTTGTTCCTTTGCCTTCCAGCCCTCCACCAGGTAATAACCCCGTATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp AAGTCAATAAAGATACCACGATTGTTTTGGAAGTGTGCGGCCTGTGGATGCCGATACTTGCCCATGGCATaGAGCTGGTGCAGCTTATGG +
Preference number: 4 (lower is better)
Translates to: KSIKIPRLFWKCAACGCRYLPMA*SWCSLW
Trigger: CCATAAGCTGCACCAGCTGCATGCCATGGGCAAGTA...TCGGCATCCACAGGCCGCACACTTCCAAAACAATCGTGGTATCTTTATTGACTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp AGGAAAGATAGCAATCAGCTGAGGCAGACATCTGCCTACCCAGATAAACAAAACGGTAGCGCTTCTCAATaGCATTGTGGGCTGTGCGCT +
Preference number: 4 (lower is better)
Translates to: RKDSNQLRQTSAYPDKQNGSASQ*HCGLCA
Trigger: AGCGCACAGCCCACAATGCCATTGAGAAGCGCTACC...GTTTTGTTTATCTGGGTAGGCAGATGTCTGCCTCAGCTGATTGCTATCTTTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp AAGTCAATAAAGATACCACGATTGTTTTGGAAGTGTGCGGCCTGTGGATGCCGAACAGGAGCAGCTGCATaGCCTTGTCAATGGAACTGC +
Preference number: 4 (lower is better)
Translates to: KSIKIPRLFWKCAACGCRTGAAA*PCQWNC
Trigger: GCAGTTCCATTGACAAGGCCATGCAGCTGCTCCTGT...TCGGCATCCACAGGCCGCACACTTCCAAAACAATCGTGGTATCTTTATTGACTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp AGGAAAGATAGCAATCAGCTGAGGCAGACATCTGCCTACCCAGATAAACAAAACCTGCAGTCTTCACGGTaGCTCCTGCATCTGTCTTCA +
Preference number: 4 (lower is better)
Translates to: RKDSNQLRQTSAYPDKQNLQSSR*LLHLSS
Trigger: TGAAGACAGATGCAGGAGCCACCGTGAAGACTGCAG...GTTTTGTTTATCTGGGTAGGCAGATGTCTGCCTCAGCTGATTGCTATCTTTCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp AAGCCAGCAAATACACCTTACAACAGATGGGAAGTCCGGCTTCCCAAAGGACAATGTAGTCGATGGCCTTaGGCAAGACAGCAGATTTAT +
Preference number: 4 (lower is better)
Translates to: KPANTPYNRWEVRLPKGQCSRWP*ARQQIY
Trigger: ATAAATCTGCTGTCTTGCGCAAGGCCATCGACTACA...TTGTCCTTTGGGAAGCCGGACTTCCCATCTGTTGTAAGGTGTATTTGCTGGCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CCA 90 bp AAGTCAATAAAGATACCACGATTGTTTTGGAAGTGTGCGGCCTGTGGATGCCGATGGTTGTTGATGAGCTaGAGCATGTCTTCGATGTCG +
Preference number: 4 (lower is better)
Translates to: KSIKIPRLFWKCAACGCRWLLMS*SMSSMS
Trigger: CGACATCGAAGACATGCTCCAGCTCATCAACAACCA...TCGGCATCCACAGGCCGCACACTTCCAAAACAATCGTGGTATCTTTATTGACTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020846.8
CDS-3UTR GCA 90 bp TCAATAAAGATACCACGATTGTTTTGGAAGTGTGCGGCCTGTGGATGCCGACCACAGCTATTTAGCAACTaGAGATATCCAAGGGCATCT +
Preference number: 4 (lower is better)
Translates to: SIKIPRLFWKCAACGCRPQLFSN*RYPRAS
Trigger: AGATGCCCTTGGATATCTGCAGTTGCTAAATAGCTG...TGGTCGGCATCCACAGGCCGCACACTTCCAAAACAATCGTGGTATCTTTATTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR GCA 90 bp AGGAAAGATAGCAATCAGCTGAGGCAGACATCTGCCTACCCAGATAAACAAAACGGTCCTTCAGTGATTTaGTTTTGTGTGCACTTCGTA +
Preference number: 4 (lower is better)
Translates to: RKDSNQLRQTSAYPDKQNGPSVI*FCVHFV
Trigger: TACGAAGTGCACACAAAAGCAAATCACTGAAGGACC...GTTTTGTTTATCTGGGTAGGCAGATGTCTGCCTCAGCTGATTGCTATCTTTCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS CCA 90 bp GCTGCTGAGGCTGGCAGCGGCTGCTGGGAGGCCAAGCTTTGGACCTaGGTGTGCAGGGCAGGGGTGGGCAAGACTCCTGGTGCAGGGGCC +
Preference number: 5 (lower is better)
Translates to: AAEAGSGCWEAKLWT*VCRAGVGKTPGAGA
Trigger: GGCCCCTGCACCAGGAGTCTTGCCCACCCCTGCCCTGCACACCCAGGTCCAAAGCTTGGCCTCCCAGCAGCCGCTGCCAGCCTCAGCAGC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS GCA 90 bp GCTGGCAGTCCAGCAGTAGCCGGTGATCGCCAAGCTTCTCTACGGTaGGTGCCGCCTCGGCCAGCATGCTCATTCGCTGCCCAGGAGCCG +
Preference number: 5 (lower is better)
Translates to: AGSPAVAGDRQASLR*VPPRPACSFAAQEP
Trigger: CGGCTCCTGGGCAGCGAATGAGCATGCTGGCCGAGGCGGCACGCACCGTAGAGAAGCTTGGCGATCACCGGCTACTGCTGGACTGCCAGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS GCA 90 bp GCCAAGATGGTCCCTCCACTCACCAGGGTCTGCAGGGGACCTGCCTaGACGGCTGTGCCAGGAGCCAGGGTGCTGATGCCTGCAGTCTTC +
Preference number: 5 (lower is better)
Translates to: AKMVPPLTRVCRGPA*TAVPGARVLMPAVF
Trigger: GAAGACTGCAGGCATCAGCACCCTGGCTCCTGGCACAGCCGTGCAGGCAGGTCCCCTGCAGACCCTGGTGAGTGGAGGGACCATCTTGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000144942.2
CDS GCA 90 bp GGTGATCGCCAAGCTTCTCTACGGTGCGTGCCGCCTCGGCCAGCATaGTCATTCGCTGCCCAGGAGCCGACAGGAAGGCAGGGGGCAGAT +
Preference number: 5 (lower is better)
Translates to: GDRQASLRCVPPRPA*SFAAQEPTGRQGAD
Trigger: ATCTGCCCCCTGCCTTCCTGTCGGCTCCTGGGCAGCGAATGAGCATGCTGGCCGAGGCGGCACGCACCGTAGAGAAGCTTGGCGATCACC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS CCA 90 bp GTCACAGTGTTTGTTCTAGGGGCTGCTGAGGCTGGCAGCGGCTGCTaGGAGGCCAAGCTTTGGACCTGGGTGTGCAGGGCAGGGGTGGGC +
Preference number: 5 (lower is better)
Translates to: VTVFVLGAAEAGSGC*EAKLWTWVCRAGVG
Trigger: GCCCACCCCTGCCCTGCACACCCAGGTCCAAAGCTTGGCCTCCCAGCAGCCGCTGCCAGCCTCAGCAGCCCCTAGAACAAACACTGTGAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS CCA 90 bp GGATGCCAACAGCAGGGCCTCGGTGTGCTCCCGCCATGTGGGCCGTaGCTCCAGCTCAGCTGTAGTGCCTCCTTTGCCACTGGAACCTGC +
Preference number: 5 (lower is better)
Translates to: GCQQQGLGVLPPCGP*LQLSCSASFATGTC
Trigger: GCAGGTTCCAGTGGCAAAGGAGGCACTACAGCTGAGCTGGAGCCACGGCCCACATGGCGGGAGCACACCGAGGCCCTGCTGTTGGCATCC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CAA 90 bp AGAGGGTGCCATCGGGCCAGTGCAGCCTCTGCAATTTCCAGATCTGCCACTAGAGGGCCGGCCCAGCGCTaGCAGGGCCAGCCACAGCTG +
Preference number: 5 (lower is better)
Translates to: RGCHRASAASAISRSATRGPAQR*QGQPQL
Trigger: CAGCTGTGGCTGGCCCTGCAAGCGCTGGGCCGGCCC...TCTAGTGGCAGATCTGGAAATTGCAGAGGCTGCACTGGCCCGATGGCACCCTCT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS TCA 90 bp TACACACAGGGCCAGGCGGGAGCGGTCCAGCATGCCTCGGCTGTGTaGAGGCAGCCGCTGGGCTTTGACCTGGCTATCCTCAAAGGCTGG +
Preference number: 5 (lower is better)
Translates to: YTQGQAGAVQHASAV*RQPLGFDLAILKGW
Trigger: CCAGCCTTTGAGGATAGCCAGGTCAAAGCCCAGCGGCTGCCTTCACACAGCCGAGGCATGCTGGACCGCTCCCGCCTGGCCCTGTGTGTA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS TCA 90 bp TGCCTCTTCATCCCGCCTCAGCCAGTGGATCACCACAGCTGTCAGTaGGGCCCACCACTTGGCCACTGGGTCTGGGCCAGTGGTGGCAGC +
Preference number: 5 (lower is better)
Translates to: CLFIPPQPVDHHSCQ*GPPLGHWVWASGGS
Trigger: GCTGCCACCACTGGCCCAGACCCAGTGGCCAAGTGGTGGGCCTCACTGACAGCTGTGGTGATCCACTGGCTGAGGCGGGATGAAGAGGCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS GCA 90 bp GAGGTCACAGTGTTTGTTCTAGGGGCTGCTGAGGCTGGCAGCGGCTaGTGGGAGGCCAAGCTTTGGACCTGGGTGTGCAGGGCAGGGGTG +
Preference number: 5 (lower is better)
Translates to: EVTVFVLGAAEAGSG*WEAKLWTWVCRAGV
Trigger: CACCCCTGCCCTGCACACCCAGGTCCAAAGCTTGGCCTCCCAGCAGCCGCTGCCAGCCTCAGCAGCCCCTAGAACAAACACTGTGACCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS GCA 90 bp ACCAAAGGTACTGTGGCCAAGATGGTCCCTCCACTCACCAGGGTCTaGAGGGGACCTGCCTGCACGGCTGTGCCAGGAGCCAGGGTGCTG +
Preference number: 5 (lower is better)
Translates to: TKGTVAKMVPPLTRV*RGPACTAVPGARVL
Trigger: CAGCACCCTGGCTCCTGGCACAGCCGTGCAGGCAGGTCCCCTGCAGACCCTGGTGAGTGGAGGGACCATCTTGGCCACAGTACCTTTGGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000144942.2
CDS GCA 90 bp AGGCAGGCCTGGCGGGCGCTGCTCAGGAAGAAACGTGTCAAGAAGTaGAGGGCTCTTGGGAGGCTGGTTTTGACCCTCAGGGCCGCTGCC +
Preference number: 5 (lower is better)
Translates to: RQAWRALLRKKRVKK*RALGRLVLTLRAAA
Trigger: GGCAGCGGCCCTGAGGGTCAAAACCAGCCTCCCAAGAGCCCTGCACTTCTTGACACGTTTCTTCCTGAGCAGCGCCCGCCAGGCCTGCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS CCA 90 bp CAAGCTTTGGACCTGGGTGTGCAGGGCAGGGGTGGGCAAGACTCCTaGTGCAGGGGCCAGCGGCAGGCTAGATGGTGGCTGCTGAGTGTT +
Preference number: 5 (lower is better)
Translates to: QALDLGVQGRGGQDS*CRGQRQARWWLLSV
Trigger: AACACTCAGCAGCCACCATCTAGCCTGCCGCTGGCCCCTGCACCAGGAGTCTTGCCCACCCCTGCCCTGCACACCCAGGTCCAAAGCTTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS CCA 90 bp AGGCGGGAGCGGTCCAGCATGCCTCGGCTGTGTGAAGGCAGCCGCTaGGCTTTGACCTGGCTATCCTCAAAGGCTGGACTGTCGGGCTCA +
Preference number: 5 (lower is better)
Translates to: RRERSSMPRLCEGSR*ALTWLSSKAGLSGS
Trigger: TGAGCCCGACAGTCCAGCCTTTGAGGATAGCCAGGTCAAAGCCCAGCGGCTGCCTTCACACAGCCGAGGCATGCTGGACCGCTCCCGCCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS CCA 90 bp GTCCCGCAGGTACCCACTGGCCTTCTCACAGATGGCCAGGCTGGCTaGGCTAGATTCCACCTTTCTGTGGTCCAGCAGAGCCCGGGCAGC +
Preference number: 5 (lower is better)
Translates to: VPQVPTGLLTDGQAG*ARFHLSVVQQSPGS
Trigger: GCTGCCCGGGCTCTGCTGGACCACAGAAAGGTGGAATCTAGCCCAGCCAGCCTGGCCATCTGTGAGAAGGCCAGTGGGTACCTGCGGGAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS TCA 90 bp TCTGCAGGGGACCTGCCTGCACGGCTGTGCCAGGAGCCAGGGTGCTaGTGCCTGCAGTCTTCACGGTGGCTCCTGCATCTGTCTTCACAG +
Preference number: 5 (lower is better)
Translates to: SAGDLPARLCQEPGC*CLQSSRWLLHLSSQ
Trigger: CTGTGAAGACAGATGCAGGAGCCACCGTGAAGACTGCAGGCATCAGCACCCTGGCTCCTGGCACAGCCGTGCAGGCAGGTCCCCTGCAGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000144942.2
CDS GCA 90 bp GGGACCTGCCTGCACGGCTGTGCCAGGAGCCAGGGTGCTGATGCCTaGAGTCTTCACGGTGGCTCCTGCATCTGTCTTCACAGCTGTCAG +
Preference number: 5 (lower is better)
Translates to: GTCLHGCARSQGADA*SLHGGSCICLHSCQ
Trigger: CTGACAGCTGTGAAGACAGATGCAGGAGCCACCGTGAAGACTGCAGGCATCAGCACCCTGGCTCCTGGCACAGCCGTGCAGGCAGGTCCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000144942.2
CDS GCA 90 bp GGGCTGTGCGCTTCTCACCACGGCTCTGAGCTGAGCCTAGGGCCTTaGTGCCAGCTGCGAGTCGGTGGATGGGCAGTTTGTCTGTGTCCA +
Preference number: 5 (lower is better)
Translates to: GLCASHHGSELSLGP*CQLRVGGWAVCLCP
Trigger: TGGACACAGACAAACTGCCCATCCACCGACTCGCAGCTGGCAGCAAGGCCCTAGGCTCAGCTCAGAGCCGTGGTGAGAAGCGCACAGCCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS CCA 90 bp CACTGCATGGCAAGAGGCACCGAGCCGCTCTGTGCTAGGCAGGCCTaGCGGGCGCTGCTCAGGAAGAAACGTGTCAAGAAGTGCAGGGCT +
Preference number: 5 (lower is better)
Translates to: HCMARGTEPLCARQA*RALLRKKRVKKCRA
Trigger: AGCCCTGCACTTCTTGACACGTTTCTTCCTGAGCAGCGCCCGCCAGGCCTGCCTAGCACAGAGCGGCTCGGTGCCTCTTGCCATGCAGTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS TCA 90 bp CGCTTCTCAATGGCATTGTGGGCTGTGCGCTTCTCACCACGGCTCTaGGCTGAGCCTAGGGCCTTGCTGCCAGCTGCGAGTCGGTGGATG +
Preference number: 5 (lower is better)
Translates to: RFSMALWAVRFSPRL*AEPRALLPAASRWM
Trigger: CATCCACCGACTCGCAGCTGGCAGCAAGGCCCTAGGCTCAGCTCAGAGCCGTGGTGAGAAGCGCACAGCCCACAATGCCATTGAGAAGCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS TCA 90 bp AGCGGTCCAGCATGCCTCGGCTGTGTGAAGGCAGCCGCTGGGCTTTaGCCTGGCTATCCTCAAAGGCTGGACTGTCGGGCTCAGAGTCAC +
Preference number: 5 (lower is better)
Translates to: SGPACLGCVKAAAGL*PGYPQRLDCRAQSH
Trigger: GTGACTCTGAGCCCGACAGTCCAGCCTTTGAGGATAGCCAGGTCAAAGCCCAGCGGCTGCCTTCACACAGCCGAGGCATGCTGGACCGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS TCA 90 bp CTCCACTCACCAGGGTCTGCACGGCTGTGCCAGGAGCCAGGGTGCTaGTGCCTGCAGTCTTCACGGTGGCTCCTGCATCTGTCTTCACAG +
Preference number: 5 (lower is better)
Translates to: LHSPGSARLCQEPGC*CLQSSRWLLHLSSQ
Trigger: CTGTGAAGACAGATGCAGGAGCCACCGTGAAGACTGCAGGCATCAGCACCCTGGCTCCTGGCACAGCCGTGCAGACCCTGGTGAGTGGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000134660.8
CDS GCA 90 bp CACCAGGGTCTGCACGGCTGTGCCAGGAGCCAGGGTGCTGATGCCTaGAGTCTTCACGGTGGCTCCTGCATCTGTCTTCACAGCTGTCAG +
Preference number: 5 (lower is better)
Translates to: HQGLHGCARSQGADA*SLHGGSCICLHSCQ
Trigger: CTGACAGCTGTGAAGACAGATGCAGGAGCCACCGTGAAGACTGCAGGCATCAGCACCCTGGCTCCTGGCACAGCCGTGCAGACCCTGGTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000134660.8
CDS CCA 90 bp AGTGGGTACAAGCGCTCAGCTGCCTCTTCATCCCGCCTCAGCCAGTaGATCACCACAGCTGTCAGTGAGGCCCACCACTTGGCCACTGGG +
Preference number: 5 (lower is better)
Translates to: SGYKRSAASSSRLSQ*ITTAVSEAHHLATG
Trigger: CCCAGTGGCCAAGTGGTGGGCCTCACTGACAGCTGTGGTGATCCACTGGCTGAGGCGGGATGAAGAGGCAGCTGAGCGCTTGTACCCACT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS-3UTR CAA 90 bp GGTGCCTACAGAGCAAGAGGGTGCCATCGGGCCAGTGCAGCCTCTGCAATTTCCAAGCTCTCAGGAGAGTaGGCACCTGGGCTGCTGGGG +
Preference number: 5 (lower is better)
Translates to: GAYRARGCHRASAASAISKLSGE*APGLLG
Trigger: CCCCAGCAGCCCAGGTGCCAACTCTCCTGAGAGCTT...GGAAATTGCAGAGGCTGCACTGGCCCGATGGCACCCTCTTGCTCTGTAGGCACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CAA 90 bp GGTGCCTACAGAGCAAGAGGGTGCCATCGGGCCAGTGCAGCCTCTGCAATTTCCGGTGCAGGTGTCACCTaGGGTCCTCCCAGGAAGGCT +
Preference number: 5 (lower is better)
Translates to: GAYRARGCHRASAASAISGAGVT*GPPRKA
Trigger: AGCCTTCCTGGGAGGACCCAAGGTGACACCTGCACC...GGAAATTGCAGAGGCTGCACTGGCCCGATGGCACCCTCTTGCTCTGTAGGCACC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS GCA 90 bp CTGTGCGCTTCTCACCACGGCTCTGAGCTGAGCCTAGGGCCTTGCTaGCAGCTGCGAGTCGGTGGATGGGCAGTTTGTCTGTGTCCACAA +
Preference number: 5 (lower is better)
Translates to: LCASHHGSELSLGPC*QLRVGGWAVCLCPQ
Trigger: TTGTGGACACAGACAAACTGCCCATCCACCGACTCGCAGCTGGCAGCAAGGCCCTAGGCTCAGCTCAGAGCCGTGGTGAGAAGCGCACAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS GCA 90 bp ACCAAAGGTACTGTGGCCAAGATGGTCCCTCCACTCACCAGGGTCTaGACGGCTGTGCCAGGAGCCAGGGTGCTGATGCCTGCAGTCTTC +
Preference number: 5 (lower is better)
Translates to: TKGTVAKMVPPLTRV*TAVPGARVLMPAVF
Trigger: GAAGACTGCAGGCATCAGCACCCTGGCTCCTGGCACAGCCGTGCAGACCCTGGTGAGTGGAGGGACCATCTTGGCCACAGTACCTTTGGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000134660.8
CDS CCA 90 bp TTCAACGCTCGCTCTAGGAGATGTTCACGGAATAGCCGGGTCACCTaGGCCAGCGGATCCACTGGGTTCCCAGCCACGCTGTACAGGCTC +
Preference number: 5 (lower is better)
Translates to: FNARSRRCSRNSRVT*ASGSTGFPATLYRL
Trigger: GAGCCTGTACAGCGTGGCTGGGAACCCAGTGGATCCGCTGGCCCAGGTGACCCGGCTATTCCGTGAACATCTCCTAGAGCGAGCGTTGAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS CCA 90 bp GGGTCTCTCAGTGTCCTGCAGCACCTGGGGGATATGCTCTACCAGTaGGTACAAGCGCTCAGCTGCCTCTTCATCCCGCCTCAGCCAGTG +
Preference number: 5 (lower is better)
Translates to: GSLSVLQHLGDMLYQ*VQALSCLFIPPQPV
Trigger: CACTGGCTGAGGCGGGATGAAGAGGCAGCTGAGCGCTTGTACCCACTGGTAGAGCATATCCCCCAGGTGCTGCAGGACACTGAGAGACCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS GCA 90 bp GGGTGGCAGCAACCACTGGGTCCAATTAGAGCCATCTCTGCTCTCTaGCTCCAGCATGCTGCGCCCAGAACTACGGTGTGTACCCGTAGC +
Preference number: 5 (lower is better)
Translates to: GWQQPLGPIRAISAL*LQHAAPRTTVCTRS
Trigger: GCTACGGGTACACACCGTAGTTCTGGGCGCAGCATGCTGGAGGCAGAGAGCAGAGATGGCTCTAATTGGACCCAGTGGTTGCTGCCACCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS CCA 90 bp GCGGGCGCTGCTCAGGAAGAAACGTGTCAAGAAGTGCAGGGCTCTTaGGAGGCTGGTTTTGACCCTCAGGGCCGCTGCCACATAGATCTC +
Preference number: 5 (lower is better)
Translates to: AGAAQEETCQEVQGS*EAGFDPQGRCHIDL
Trigger: GAGATCTATGTGGCAGCGGCCCTGAGGGTCAAAACCAGCCTCCCAAGAGCCCTGCACTTCTTGACACGTTTCTTCCTGAGCAGCGCCCGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS CCA 90 bp TTCTCACAGATGGCCAGGCTGGCTGGGCTAGATTCCACCTTTCTGTaGTCCAGCAGAGCCCGGGCAGCCTTGAAGGAGTACAGAGCTGCC +
Preference number: 5 (lower is better)
Translates to: FSQMARLAGLDSTFL*SSRARAALKEYRAA
Trigger: GGCAGCTCTGTACTCCTTCAAGGCTGCCCGGGCTCTGCTGGACCACAGAAAGGTGGAATCTAGCCCAGCCAGCCTGGCCATCTGTGAGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS-3UTR CAA 90 bp CCTGATTGCTTGTCAGGCTCACCCTCTGGAAGACCACAGCCAATGACAAAGGTCGCTGAGCCTAGGGCCTaGCTGCCAGCTGCGAGTCGG +
Preference number: 5 (lower is better)
Translates to: PDCLSGSPSGRPQPMTKVAEPRA*LPAASR
Trigger: CCGACTCGCAGCTGGCAGCAAGGCCCTAGGCTCAGC...GACCTTTGTCATTGGCTGTGGTCTTCCAGAGGGTGAGCCTGACAAGCAATCAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CAA 90 bp GGTGCCTACAGAGCAAGAGGGTGCCATCGGGCCAGTGCAGCCTCTGCAATTTCCTGTCCTCCTGTGTACTaGCCCATGGCATGCAGCTGG +
Preference number: 5 (lower is better)
Translates to: GAYRARGCHRASAASAISCPPVY*PMACSW
Trigger: CCAGCTGCATGCCATGGGCAAGTACACAGGAGGACA...GGAAATTGCAGAGGCTGCACTGGCCCGATGGCACCCTCTTGCTCTGTAGGCACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS GCA 90 bp TGGGAGGCTGGTTTTGACCCTCAGGGCCGCTGCCACATAGATCTCTaGCAGTGTTGCCATGGAGATAGCATCTCCTGCGCACTCAGCCAG +
Preference number: 5 (lower is better)
Translates to: WEAGFDPQGRCHIDL*QCCHGDSISCALSQ
Trigger: CTGGCTGAGTGCGCAGGAGATGCTATCTCCATGGCAACACTGGCAGAGATCTATGTGGCAGCGGCCCTGAGGGTCAAAACCAGCCTCCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS CCA 90 bp GTCGGTGGATGGGCAGTTTGTCTGTGTCCACAACCAAAGGTACTGTaGCCAAGATGGTCCCTCCACTCACCAGGGTCTGCAGGGGACCTG +
Preference number: 5 (lower is better)
Translates to: VGGWAVCLCPQPKVL*PRWSLHSPGSAGDL
Trigger: CAGGTCCCCTGCAGACCCTGGTGAGTGGAGGGACCATCTTGGCCACAGTACCTTTGGTTGTGGACACAGACAAACTGCCCATCCACCGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000144942.2
CDS CCA 90 bp TGGGCAGTTTGTCTGTGTCCACAACCAAAGGTACTGTGGCCAAGATaGTCCCTCCACTCACCAGGGTCTGCACGGCTGTGCCAGGAGCCA +
Preference number: 5 (lower is better)
Translates to: WAVCLCPQPKVLWPR*SLHSPGSARLCQEP
Trigger: TGGCTCCTGGCACAGCCGTGCAGACCCTGGTGAGTGGAGGGACCATCTTGGCCACAGTACCTTTGGTTGTGGACACAGACAAACTGCCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000134660.8
CDS CCA 90 bp GTCGGTGGATGGGCAGTTTGTCTGTGTCCACAACCAAAGGTACTGTaGCCAAGATGGTCCCTCCACTCACCAGGGTCTGCACGGCTGTGC +
Preference number: 5 (lower is better)
Translates to: VGGWAVCLCPQPKVL*PRWSLHSPGSARLC
Trigger: GCACAGCCGTGCAGACCCTGGTGAGTGGAGGGACCATCTTGGCCACAGTACCTTTGGTTGTGGACACAGACAAACTGCCCATCCACCGAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000134660.8
CDS-3UTR CAA 90 bp AAGTCAATAAAGATACCACGATTGTTTTGGAAGTGTGCGGCCTGTGGATGCCGAGGGCCGGCCCAGCGCTaGCAGGGCCAGCCACAGCTG +
Preference number: 5 (lower is better)
Translates to: KSIKIPRLFWKCAACGCRGPAQR*QGQPQL
Trigger: CAGCTGTGGCTGGCCCTGCAAGCGCTGGGCCGGCCC...TCGGCATCCACAGGCCGCACACTTCCAAAACAATCGTGGTATCTTTATTGACTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS GCA 90 bp GAAGTGCAGGGCTCTTGGGAGGCTGGTTTTGACCCTCAGGGCCGCTaGCACATAGATCTCTGCCAGTGTTGCCATGGAGATAGCATCTCC +
Preference number: 5 (lower is better)
Translates to: EVQGSWEAGFDPQGR*HIDLCQCCHGDSIS
Trigger: GGAGATGCTATCTCCATGGCAACACTGGCAGAGATCTATGTGGCAGCGGCCCTGAGGGTCAAAACCAGCCTCCCAAGAGCCCTGCACTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS CCA 90 bp TCTGAGCTGAGCCTAGGGCCTTGCTGCCAGCTGCGAGTCGGTGGATaGGCAGTTTGTCTGTGTCCACAACCAAAGGTACTGTGGCCAAGA +
Preference number: 5 (lower is better)
Translates to: SELSLGPCCQLRVGG*AVCLCPQPKVLWPR
Trigger: TCTTGGCCACAGTACCTTTGGTTGTGGACACAGACAAACTGCCCATCCACCGACTCGCAGCTGGCAGCAAGGCCCTAGGCTCAGCTCAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS-3UTR CAA 90 bp AGCAAGAGGGTGCCATCGGGCCAGTGCAGCCTCTGCAATTTCCAGATCTGCCACCGCTTCTCAATGGCATaGTGGGCTGTGCGCTTCTCA +
Preference number: 5 (lower is better)
Translates to: SKRVPSGQCSLCNFQICHRFSMA*WAVRFS
Trigger: TGAGAAGCGCACAGCCCACAATGCCATTGAGAAGCG...GTGGCAGATCTGGAAATTGCAGAGGCTGCACTGGCCCGATGGCACCCTCTTGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CAA 90 bp CCCAAAGGACAAGCCAGGAAAGATAGCAATCAGCTGAGGCAGACATCTGCCTACAGTGAGGCCCACCACTaGGCCACTGGGTCTGGGCCA +
Preference number: 5 (lower is better)
Translates to: PKGQARKDSNQLRQTSAYSEAHH*ATGSGP
Trigger: TGGCCCAGACCCAGTGGCCAAGTGGTGGGCCTCACT...GTAGGCAGATGTCTGCCTCAGCTGATTGCTATCTTTCCTGGCTTGTCCTTTGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CAA 90 bp CCAGTGCAGCCTCTGCAATTTCCAGATCTGCCACTAGAGGTCGGCATGGTCCTGGCTGCTCAGGTCATGTaGGAAACCACGCAGCTCCAG +
Preference number: 5 (lower is better)
Translates to: PVQPLQFPDLPLEVGMVLAAQVM*ETTQLQ
Trigger: CTGGAGCTGCGTGGTTTCCAACATGACCTGAGCAGC...CAGGACCATGCCGACCTCTAGTGGCAGATCTGGAAATTGCAGAGGCTGCACTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CAA 90 bp TTGTTTTGGAAGTGTGCGGCCTGTGGATGCCGACCAGATTCCCTAAGGGGTTGGGCTGTAGTGCCTCCTTaGCCACTGGAACCTGCCCTC +
Preference number: 5 (lower is better)
Translates to: LFWKCAACGCRPDSLRGWAVVPP*PLEPAL
Trigger: GAGGGCAGGTTCCAGTGGCAAAGGAGGCACTACAGC...CCAACCCCTTAGGGAATCTGGTCGGCATCCACAGGCCGCACACTTCCAAAACAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS TCA 90 bp GGAAGAAACGTGTCAAGAAGTGCAGGGCTCTTGGGAGGCTGGTTTTaGCCCTCAGGGCCGCTGCCACATAGATCTCTGCCAGTGTTGCCA +
Preference number: 5 (lower is better)
Translates to: GRNVSRSAGLLGGWF*PSGPLPHRSLPVLP
Trigger: TGGCAACACTGGCAGAGATCTATGTGGCAGCGGCCCTGAGGGTCAAAACCAGCCTCCCAAGAGCCCTGCACTTCTTGACACGTTTCTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS-3UTR CAA 90 bp TATACGGGGTTATTACCTGGTGGAGGGCTGGAAGGCAAAGGAACAACTGAGACCAAGCTCTCAGGAGAGTaGGCACCTGGGCTGCTGGGG +
Preference number: 5 (lower is better)
Translates to: YTGLLPGGGLEGKGTTETKLSGE*APGLLG
Trigger: CCCCAGCAGCCCAGGTGCCAACTCTCCTGAGAGCTT...GGTCTCAGTTGTTCCTTTGCCTTCCAGCCCTCCACCAGGTAATAACCCCGTATA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CAA 90 bp AGCAAGAGGGTGCCATCGGGCCAGTGCAGCCTCTGCAATTTCCAGATCTGCCACCGGTGGATGGGCAGTTaGTCTGTGTCCACAACCAAA +
Preference number: 5 (lower is better)
Translates to: SKRVPSGQCSLCNFQICHRWMGS*SVSTTK
Trigger: TTTGGTTGTGGACACAGACAAACTGCCCATCCACCG...GTGGCAGATCTGGAAATTGCAGAGGCTGCACTGGCCCGATGGCACCCTCTTGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CAA 90 bp TCAATAAAGATACCACGATTGTTTTGGAAGTGTGCGGCCTGTGGATGCCGACCAGCTGAGCCTAGGGCCTaGCTGCCAGCTGCGAGTCGG +
Preference number: 5 (lower is better)
Translates to: SIKIPRLFWKCAACGCRPAEPRA*LPAASR
Trigger: CCGACTCGCAGCTGGCAGCAAGGCCCTAGGCTCAGC...TGGTCGGCATCCACAGGCCGCACACTTCCAAAACAATCGTGGTATCTTTATTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CAA 90 bp GGTGCCTACAGAGCAAGAGGGTGCCATCGGGCCAGTGCAGCCTCTGCAATTTCCTCCAGGTCAGCTTGTTaGCGATGTCTCCAGAAGTGT +
Preference number: 5 (lower is better)
Translates to: GAYRARGCHRASAASAISSRSAC*RCLQKC
Trigger: ACACTTCTGGAGACATCGCAAACAAGCTGACCTGGA...GGAAATTGCAGAGGCTGCACTGGCCCGATGGCACCCTCTTGCTCTGTAGGCACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CAA 90 bp GTCAATAAAGATACCACGATTGTTTTGGAAGTGTGCGGCCTGTGGATGCCGACCCTTGGGAGGCTGGTTTaGACCCTCAGGGCCGCTGCC +
Preference number: 5 (lower is better)
Translates to: VNKDTTIVLEVCGLWMPTLGRLV*TLRAAA
Trigger: GGCAGCGGCCCTGAGGGTCAAAACCAGCCTCCCAAG...GGTCGGCATCCACAGGCCGCACACTTCCAAAACAATCGTGGTATCTTTATTGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CAA 90 bp GCCAGCAAATACACCTTACAACAGATGGGAAGTCCGGCTTCCCAAAGGACAAGCAGAGCCCGGGCAGCCTaGAAGGAGTACAGAGCTGCC +
Preference number: 5 (lower is better)
Translates to: ASKYTLQQMGSPASQRTSRARAA*KEYRAA
Trigger: GGCAGCTCTGTACTCCTTCAAGGCTGCCCGGGCTCT...GCTTGTCCTTTGGGAAGCCGGACTTCCCATCTGTTGTAAGGTGTATTTGCTGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CAA 90 bp CCTGATTGCTTGTCAGGCTCACCCTCTGGAAGACCACAGCCAATGACAAAGGTCGCTGTAGTGCCTCCTTaGCCACTGGAACCTGCCCTC +
Preference number: 5 (lower is better)
Translates to: PDCLSGSPSGRPQPMTKVAVVPP*PLEPAL
Trigger: GAGGGCAGGTTCCAGTGGCAAAGGAGGCACTACAGC...GACCTTTGTCATTGGCTGTGGTCTTCCAGAGGGTGAGCCTGACAAGCAATCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS TCA 90 bp CTTCACGGTGGCTCCTGCATCTGTCTTCACAGCTGTCAGCAGCAGTaGGTCTGCCTTGATGAAGTGTGGCTGCAGTACAACTGGGACCTG +
Preference number: 5 (lower is better)
Translates to: LHGGSCICLHSCQQQ*VCLDEVWLQYNWDL
Trigger: CAGGTCCCAGTTGTACTGCAGCCACACTTCATCAAGGCAGACTCACTGCTGCTGACAGCTGTGAAGACAGATGCAGGAGCCACCGTGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS-3UTR CAA 90 bp TTGTTTTGGAAGTGTGCGGCCTGTGGATGCCGACCAGATTCCCTAAGGGGTTGGGTCAGGTTCTCCTGCTaGAGCTTCTGGTTGCTGTGC +
Preference number: 5 (lower is better)
Translates to: LFWKCAACGCRPDSLRGWVRFSC*SFWLLC
Trigger: GCACAGCAACCAGAAGCTCAAGCAGGAGAACCTGAC...CCAACCCCTTAGGGAATCTGGTCGGCATCCACAGGCCGCACACTTCCAAAACAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CAA 90 bp AGAGGGTGCCATCGGGCCAGTGCAGCCTCTGCAATTTCCAGATCTGCCACTAGAAGCGAGGCCAAAGGATaGCAGGTCAGACACAGAAAG +
Preference number: 5 (lower is better)
Translates to: RGCHRASAASAISRSATRSEAKG*QVRHRK
Trigger: CTTTCTGTGTCTGACCTGCAATCCTTTGGCCTCGCT...TCTAGTGGCAGATCTGGAAATTGCAGAGGCTGCACTGGCCCGATGGCACCCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CAA 90 bp CCTGATTGCTTGTCAGGCTCACCCTCTGGAAGACCACAGCCAATGACAAAGGTCTGTCCTCCTGTGTACTaGCCCATGGCATGCAGCTGG +
Preference number: 5 (lower is better)
Translates to: PDCLSGSPSGRPQPMTKVCPPVY*PMACSW
Trigger: CCAGCTGCATGCCATGGGCAAGTACACAGGAGGACA...GACCTTTGTCATTGGCTGTGGTCTTCCAGAGGGTGAGCCTGACAAGCAATCAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CAA 90 bp AACAGATGGGAAGTCCGGCTTCCCAAAGGACAAGCCAGGAAAGATAGCAATCAGGCGCACTCAGCCAGGTaGAGGGCACTTAGTGCCAGG +
Preference number: 5 (lower is better)
Translates to: NRWEVRLPKGQARKDSNQAHSAR*RALSAR
Trigger: CCTGGCACTAAGTGCCCTCAACCTGGCTGAGTGCGC...CTGATTGCTATCTTTCCTGGCTTGTCCTTTGGGAAGCCGGACTTCCCATCTGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CAA 90 bp GTCAATAAAGATACCACGATTGTTTTGGAAGTGTGCGGCCTGTGGATGCCGACCAGAGCCCGGGCAGCCTaGAAGGAGTACAGAGCTGCC +
Preference number: 5 (lower is better)
Translates to: VNKDTTIVLEVCGLWMPTRARAA*KEYRAA
Trigger: GGCAGCTCTGTACTCCTTCAAGGCTGCCCGGGCTCT...GGTCGGCATCCACAGGCCGCACACTTCCAAAACAATCGTGGTATCTTTATTGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CAA 90 bp AAGCCAGCAAATACACCTTACAACAGATGGGAAGTCCGGCTTCCCAAAGGACAAGCGCACTCAGCCAGGTaGAGGGCACTTAGTGCCAGG +
Preference number: 5 (lower is better)
Translates to: KPANTPYNRWEVRLPKGQAHSAR*RALSAR
Trigger: CCTGGCACTAAGTGCCCTCAACCTGGCTGAGTGCGC...TTGTCCTTTGGGAAGCCGGACTTCCCATCTGTTGTAAGGTGTATTTGCTGGCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CAA 90 bp AAGTCAATAAAGATACCACGATTGTTTTGGAAGTGTGCGGCCTGTGGATGCCGACTTGGGAGGCTGGTTTaGACCCTCAGGGCCGCTGCC +
Preference number: 5 (lower is better)
Translates to: KSIKIPRLFWKCAACGCRLGRLV*TLRAAA
Trigger: GGCAGCGGCCCTGAGGGTCAAAACCAGCCTCCCAAG...TCGGCATCCACAGGCCGCACACTTCCAAAACAATCGTGGTATCTTTATTGACTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS GCA 90 bp CACAGACTGGTACGGGCCACAAGAAGTAGATCACACAGGAGCAGCTaGATGGCCTTGTCAATGGAACTGCCAGTTGGTGTAGAGGCTAAG +
Preference number: 5 (lower is better)
Translates to: HRLVRATRSRSHRSS*MALSMELPVGVEAK
Trigger: CTTAGCCTCTACACCAACTGGCAGTTCCATTGACAAGGCCATGCAGCTGCTCCTGTGTGATCTACTTCTTGTGGCCCGTACCAGTCTGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS CCA 90 bp GCGTCAAACAGGCCCGGGAAGTCACTGTCTTGGTTGTTGATGAGCTaGAGCATGTCTTCGATGTCGTTCAAAACCGCTGTGTCCAGTTCG +
Preference number: 5 (lower is better)
Translates to: ASNRPGKSLSWLLMS*SMSSMSFKTAVSSS
Trigger: CGAACTGGACACAGCGGTTTTGAACGACATCGAAGACATGCTCCAGCTCATCAACAACCAAGACAGTGACTTCCCGGGCCTGTTTGACGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020846.8
CDS CCA 90 bp AGCTTGTTTGCGATGTCTCCAGAAGTGTACAGCCGGGCCAGAGTGTaGCCTAGTCACAGGTTCCCCATAGACAAAGAGAAGAGCCAAGCA +
Preference number: 5 (lower is better)
Translates to: SLFAMSPEVYSRARV*PSHRFPIDKEKSQA
Trigger: TGCTTGGCTCTTCTCTTTGTCTATGGGGAACCTGTGACTAGGCCACACTCTGGCCCGGCTGTACACTTCTGGAGACATCGCAAACAAGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS-3UTR CAA 90 bp CCAAGCCAGCAAATACACCTTACAACAGATGGGAAGTCCGGCTTCCCAAAGGACCGCTTCTCAATGGCATaGTGGGCTGTGCGCTTCTCA +
Preference number: 5 (lower is better)
Translates to: PSQQIHLTTDGKSGFPKDRFSMA*WAVRFS
Trigger: TGAGAAGCGCACAGCCCACAATGCCATTGAGAAGCG...GTCCTTTGGGAAGCCGGACTTCCCATCTGTTGTAAGGTGTATTTGCTGGCTTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CAA 90 bp CCTGATTGCTTGTCAGGCTCACCCTCTGGAAGACCACAGCCAATGACAAAGGTCCCCACCACCAGGTCTTaGAGCTCCACAATCTTGTCA +
Preference number: 5 (lower is better)
Translates to: PDCLSGSPSGRPQPMTKVPTTRS*SSTILS
Trigger: TGACAAGATTGTGGAGCTCAAAGACCTGGTGGTGGG...GACCTTTGTCATTGGCTGTGGTCTTCCAGAGGGTGAGCCTGACAAGCAATCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CAA 90 bp GCCAGCAAATACACCTTACAACAGATGGGAAGTCCGGCTTCCCAAAGGACAAGCGTCAGGTTCTCCTGCTaGAGCTTCTGGTTGCTGTGC +
Preference number: 5 (lower is better)
Translates to: ASKYTLQQMGSPASQRTSVRFSC*SFWLLC
Trigger: GCACAGCAACCAGAAGCTCAAGCAGGAGAACCTGAC...GCTTGTCCTTTGGGAAGCCGGACTTCCCATCTGTTGTAAGGTGTATTTGCTGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CAA 90 bp GCTAGGGAAAAGCCACTAAGGTGCCTACAGAGCAAGAGGGTGCCATCGGGCCAGAGGTCCTTCAGTGATTaGCTTTTGTGTGCACTTCGT +
Preference number: 5 (lower is better)
Translates to: AREKPLRCLQSKRVPSGQRSFSD*LLCALR
Trigger: ACGAAGTGCACACAAAAGCAAATCACTGAAGGACCT...CTGGCCCGATGGCACCCTCTTGCTCTGTAGGCACCTTAGTGGCTTTTCCCTAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CAA 90 bp TTGTTTTGGAAGTGTGCGGCCTGTGGATGCCGACCAGATTCCCTAAGGGGTTGGTCCAGGTCAGCTTGTTaGCGATGTCTCCAGAAGTGT +
Preference number: 5 (lower is better)
Translates to: LFWKCAACGCRPDSLRGWSRSAC*RCLQKC
Trigger: ACACTTCTGGAGACATCGCAAACAAGCTGACCTGGA...CCAACCCCTTAGGGAATCTGGTCGGCATCCACAGGCCGCACACTTCCAAAACAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CAA 90 bp AGGAAAGATAGCAATCAGCTGAGGCAGACATCTGCCTACCCAGATAAACAAAACAGTGAGGCCCACCACTaGGCCACTGGGTCTGGGCCA +
Preference number: 5 (lower is better)
Translates to: RKDSNQLRQTSAYPDKQNSEAHH*ATGSGP
Trigger: TGGCCCAGACCCAGTGGCCAAGTGGTGGGCCTCACT...GTTTTGTTTATCTGGGTAGGCAGATGTCTGCCTCAGCTGATTGCTATCTTTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CAA 90 bp GTCAATAAAGATACCACGATTGTTTTGGAAGTGTGCGGCCTGTGGATGCCGACCGCTGCTCAGGTCATGTaGGAAACCACGCAGCTCCAG +
Preference number: 5 (lower is better)
Translates to: VNKDTTIVLEVCGLWMPTAAQVM*ETTQLQ
Trigger: CTGGAGCTGCGTGGTTTCCAACATGACCTGAGCAGC...GGTCGGCATCCACAGGCCGCACACTTCCAAAACAATCGTGGTATCTTTATTGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS GCA 90 bp GCTTCTGGTTGCTGTGCTGCAAGAAGCGGATGTAGTCGATGGCCTTaGGCAAGACAGCAGATTTATTCAGCTTTGCTTCAGTGCCCACCA +
Preference number: 5 (lower is better)
Translates to: ASGCCAARSGCSRWP*ARQQIYSALLQCPP
Trigger: TGGTGGGCACTGAAGCAAAGCTGAATAAATCTGCTGTCTTGCGCAAGGCCATCGACTACATCCGCTTCTTGCAGCACAGCAACCAGAAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS-3UTR CAA 90 bp TTGTTTTGGAAGTGTGCGGCCTGTGGATGCCGACCAGATTCCCTAAGGGGTTGGCAGATTTATTCAGCTTaGCTTCAGTGCCCACCACCA +
Preference number: 5 (lower is better)
Translates to: LFWKCAACGCRPDSLRGWQIYSA*LQCPPP
Trigger: TGGTGGTGGGCACTGAAGCAAAGCTGAATAAATCTG...CCAACCCCTTAGGGAATCTGGTCGGCATCCACAGGCCGCACACTTCCAAAACAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CAA 90 bp TATACGGGGTTATTACCTGGTGGAGGGCTGGAAGGCAAAGGAACAACTGAGACCAGCGAGGCCAAAGGATaGCAGGTCAGACACAGAAAG +
Preference number: 5 (lower is better)
Translates to: YTGLLPGGGLEGKGTTETSEAKG*QVRHRK
Trigger: CTTTCTGTGTCTGACCTGCAATCCTTTGGCCTCGCT...GGTCTCAGTTGTTCCTTTGCCTTCCAGCCCTCCACCAGGTAATAACCCCGTATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS TCA 90 bp GTGATTTGCTTTTGTGTGCACTTCGTAGGGTCAGGTTCTCCTGCTTaGGCTTCTGGTTGCTGTGCTGCAAGAAGCGGATGTAGTCGATGG +
Preference number: 5 (lower is better)
Translates to: VICFCVHFVGSGSPA*ASGCCAARSGCSRW
Trigger: CCATCGACTACATCCGCTTCTTGCAGCACAGCAACCAGAAGCTCAAGCAGGAGAACCTGACCCTACGAAGTGCACACAAAAGCAAATCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS-3UTR CAA 90 bp GTCAATAAAGATACCACGATTGTTTTGGAAGTGTGCGGCCTGTGGATGCCGACCCGGGAAGTCACTGTCTaGGTTGTTGATGAGCTGGAG +
Preference number: 5 (lower is better)
Translates to: VNKDTTIVLEVCGLWMPTREVTV*VVDELE
Trigger: CTCCAGCTCATCAACAACCAAGACAGTGACTTCCCG...GGTCGGCATCCACAGGCCGCACACTTCCAAAACAATCGTGGTATCTTTATTGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020846.8
CDS-3UTR CAA 90 bp ACCCTCTGGAAGACCACAGCCAATGACAAAGGTCCTCAAGGGAAAGCTTTGGGGCAGATTTATTCAGCTTaGCTTCAGTGCCCACCACCA +
Preference number: 5 (lower is better)
Translates to: TLWKTTANDKGPQGKALGQIYSA*LQCPPP
Trigger: TGGTGGTGGGCACTGAAGCAAAGCTGAATAAATCTG...CCCCAAAGCTTTCCCTTGAGGACCTTTGTCATTGGCTGTGGTCTTCCAGAGGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CAA 90 bp TTGTTTTGGAAGTGTGCGGCCTGTGGATGCCGACCAGATTCCCTAAGGGGTTGGTTCAGTGATTTGCTTTaGTGTGCACTTCGTAGGGTC +
Preference number: 5 (lower is better)
Translates to: LFWKCAACGCRPDSLRGWFSDLL*CALRRV
Trigger: GACCCTACGAAGTGCACACAAAAGCAAATCACTGAA...CCAACCCCTTAGGGAATCTGGTCGGCATCCACAGGCCGCACACTTCCAAAACAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CAA 90 bp TCAATAAAGATACCACGATTGTTTTGGAAGTGTGCGGCCTGTGGATGCCGACCACGGTGGATGGGCAGTTaGTCTGTGTCCACAACCAAA +
Preference number: 5 (lower is better)
Translates to: SIKIPRLFWKCAACGCRPRWMGS*SVSTTK
Trigger: TTTGGTTGTGGACACAGACAAACTGCCCATCCACCG...TGGTCGGCATCCACAGGCCGCACACTTCCAAAACAATCGTGGTATCTTTATTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CAA 90 bp TCAATAAAGATACCACGATTGTTTTGGAAGTGTGCGGCCTGTGGATGCCGACCACCCACCACCAGGTCTTaGAGCTCCACAATCTTGTCA +
Preference number: 5 (lower is better)
Translates to: SIKIPRLFWKCAACGCRPPTTRS*SSTILS
Trigger: TGACAAGATTGTGGAGCTCAAAGACCTGGTGGTGGG...TGGTCGGCATCCACAGGCCGCACACTTCCAAAACAATCGTGGTATCTTTATTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CAA 90 bp TATACGGGGTTATTACCTGGTGGAGGGCTGGAAGGCAAAGGAACAACTGAGACCTTCAGTGATTTGCTTTaGTGTGCACTTCGTAGGGTC +
Preference number: 5 (lower is better)
Translates to: YTGLLPGGGLEGKGTTETFSDLL*CALRRV
Trigger: GACCCTACGAAGTGCACACAAAAGCAAATCACTGAA...GGTCTCAGTTGTTCCTTTGCCTTCCAGCCCTCCACCAGGTAATAACCCCGTATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CAA 90 bp GATATACGGGGTTATTACCTGGTGGAGGGCTGGAAGGCAAAGGAACAACTGAGACAAATCCAGGTCAGCTaGTTTGCGATGTCTCCAGAA +
Preference number: 5 (lower is better)
Translates to: DIRGYYLVEGWKAKEQLRQIQVS*FAMSPE
Trigger: TTCTGGAGACATCGCAAACAAGCTGACCTGGATTTG...TCTCAGTTGTTCCTTTGCCTTCCAGCCCTCCACCAGGTAATAACCCCGTATATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CAA 90 bp TCAATAAAGATACCACGATTGTTTTGGAAGTGTGCGGCCTGTGGATGCCGACCACAAATCCAGGTCAGCTaGTTTGCGATGTCTCCAGAA +
Preference number: 5 (lower is better)
Translates to: SIKIPRLFWKCAACGCRPQIQVS*FAMSPE
Trigger: TTCTGGAGACATCGCAAACAAGCTGACCTGGATTTG...TGGTCGGCATCCACAGGCCGCACACTTCCAAAACAATCGTGGTATCTTTATTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS-3UTR CAA 90 bp AAGTCAATAAAGATACCACGATTGTTTTGGAAGTGTGCGGCCTGTGGATGCCGATCACTGTCTTGGTTGTaGATGAGCTGGAGCATGTCT +
Preference number: 5 (lower is better)
Translates to: KSIKIPRLFWKCAACGCRSLSWL*MSWSMS
Trigger: AGACATGCTCCAGCTCATCAACAACCAAGACAGTGA...TCGGCATCCACAGGCCGCACACTTCCAAAACAATCGTGGTATCTTTATTGACTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020846.8
CDS-3UTR CAA 90 bp AAGTCAATAAAGATACCACGATTGTTTTGGAAGTGTGCGGCCTGTGGATGCCGAAGGTCCTTCAGTGATTaGCTTTTGTGTGCACTTCGT +
Preference number: 5 (lower is better)
Translates to: KSIKIPRLFWKCAACGCRRSFSD*LLCALR
Trigger: ACGAAGTGCACACAAAAGCAAATCACTGAAGGACCT...TCGGCATCCACAGGCCGCACACTTCCAAAACAATCGTGGTATCTTTATTGACTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS TCA 72 bp AAGGCAGGCTCGAGTAACCCAGCACGGGCGCAGGGCTaGGCTGTACGGGTGGTGCGGGGAAGCTCGGAGGCA +
Preference number: 6 (lower is better)
Translates to: KAGSSNPARAQG*AVRVVRGSSEA
Trigger: TGCCTCCGAGCTTCCCCGCACCACCCGTACAGCTCAGCCCTGCGCCCGTGCTGGGTTACTCGAGCCTGCCTT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS CCA 72 bp CAGCAGGGCCTCGGTGTGCTCCCGCCATGTGGGCCGTaGCTCCAGCTCAGCTGTAGTGCCTCCTTTGCCACT +
Preference number: 6 (lower is better)
Translates to: QQGLGVLPPCGP*LQLSCSASFAT
Trigger: AGTGGCAAAGGAGGCACTACAGCTGAGCTGGAGCCACGGCCCACATGGCGGGAGCACACCGAGGCCCTGCTG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS TCA 72 bp GACCTGCCTGCACGGCTGTGCCAGGAGCCAGGGTGCTaGTGCCTGCAGTCTTCACGGTGGCTCCTGCATCTG +
Preference number: 6 (lower is better)
Translates to: DLPARLCQEPGC*CLQSSRWLLHL
Trigger: CAGATGCAGGAGCCACCGTGAAGACTGCAGGCATCAGCACCCTGGCTCCTGGCACAGCCGTGCAGGCAGGTC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000144942.2
CDS TCA 72 bp CCAGGGTCTGCACGGCTGTGCCAGGAGCCAGGGTGCTaGTGCCTGCAGTCTTCACGGTGGCTCCTGCATCTG +
Preference number: 6 (lower is better)
Translates to: PGSARLCQEPGC*CLQSSRWLLHL
Trigger: CAGATGCAGGAGCCACCGTGAAGACTGCAGGCATCAGCACCCTGGCTCCTGGCACAGCCGTGCAGACCCTGG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000134660.8
CDS GCA 72 bp AGGAGCCGACAGGAAGGCAGGGGGCAGATAGCAGGATaGCAACAGCAGGGCCTCGGTGTGCTCCCGCCATGT +
Preference number: 6 (lower is better)
Translates to: RSRQEGRGQIAG*QQQGLGVLPPC
Trigger: ACATGGCGGGAGCACACCGAGGCCCTGCTGTTGGCATCCTGCTATCTGCCCCCTGCCTTCCTGTCGGCTCCT
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS GCA 72 bp CAAGCTTCTCTACGGTGCGTGCCGCCTCGGCCAGCATaGTCATTCGCTGCCCAGGAGCCGACAGGAAGGCAG +
Preference number: 6 (lower is better)
Translates to: QASLRCVPPRPA*SFAAQEPTGRQ
Trigger: CTGCCTTCCTGTCGGCTCCTGGGCAGCGAATGAGCATGCTGGCCGAGGCGGCACGCACCGTAGAGAAGCTTG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS GCA 72 bp CCAGCAGTAGCCGGTGATCGCCAAGCTTCTCTACGGTaGGTGCCGCCTCGGCCAGCATGCTCATTCGCTGCC +
Preference number: 6 (lower is better)
Translates to: PAVAGDRQASLR*VPPRPACSFAA
Trigger: GGCAGCGAATGAGCATGCTGGCCGAGGCGGCACGCACCGTAGAGAAGCTTGGCGATCACCGGCTACTGCTGG
65% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS TCA 72 bp CCACCTTTCTGTGGTCCAGCAGAGCCCGGGCAGCCTTaGAGGAGTACAGAGCTGCCCTGGGCAGGGGTCTCT +
Preference number: 6 (lower is better)
Translates to: PPFCGPAEPGQP*RSTELPWAGVS
Trigger: AGAGACCCCTGCCCAGGGCAGCTCTGTACTCCTTCAAGGCTGCCCGGGCTCTGCTGGACCACAGAAAGGTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS GCA 72 bp ACTGTGGCCAAGATGGTCCCTCCACTCACCAGGGTCTaGACGGCTGTGCCAGGAGCCAGGGTGCTGATGCCT +
Preference number: 6 (lower is better)
Translates to: TVAKMVPPLTRV*TAVPGARVLMP
Trigger: AGGCATCAGCACCCTGGCTCCTGGCACAGCCGTGCAGACCCTGGTGAGTGGAGGGACCATCTTGGCCACAGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000134660.8
CDS CCA 72 bp TTTGTTCTAGGGGCTGCTGAGGCTGGCAGCGGCTGCTaGGAGGCCAAGCTTTGGACCTGGGTGTGCAGGGCA +
Preference number: 6 (lower is better)
Translates to: FVLGAAEAGSGC*EAKLWTWVCRA
Trigger: TGCCCTGCACACCCAGGTCCAAAGCTTGGCCTCCCAGCAGCCGCTGCCAGCCTCAGCAGCCCCTAGAACAAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS CCA 72 bp GCAGCTTATGGTAGACAACAGCCGCATCCCGGGCACTaGCACGGGCATCCTTCCTCAGCCCACGGTCCCTCA +
Preference number: 6 (lower is better)
Translates to: AAYGRQQPHPGH*HGHPSSAHGPS
Trigger: TGAGGGACCGTGGGCTGAGGAAGGATGCCCGTGCCAGTGCCCGGGATGCGGCTGTTGTCTACCATAAGCTGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS CCA 72 bp GCAAGAGGCACCGAGCCGCTCTGTGCTAGGCAGGCCTaGCGGGCGCTGCTCAGGAAGAAACGTGTCAAGAAG +
Preference number: 6 (lower is better)
Translates to: ARGTEPLCARQA*RALLRKKRVKK
Trigger: CTTCTTGACACGTTTCTTCCTGAGCAGCGCCCGCCAGGCCTGCCTAGCACAGAGCGGCTCGGTGCCTCTTGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS CCA 72 bp AGTGGATCACCACAGCTGTCAGTGAGGCCCACCACTTaGCCACTGGGTCTGGGCCAGTGGTGGCAGCCATGC +
Preference number: 6 (lower is better)
Translates to: SGSPQLSVRPTT*PLGLGQWWQPC
Trigger: GCATGGCTGCCACCACTGGCCCAGACCCAGTGGCCAAGTGGTGGGCCTCACTGACAGCTGTGGTGATCCACT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS CCA 72 bp CTCTGTGCCAACCGCCGCAGGCTGCTCAGGTCATGTTaGAAACCACGCAGCTCCAGAGCAGAGGCCTGGGGT +
Preference number: 6 (lower is better)
Translates to: LCANRRRLLRSC*KPRSSRAEAWG
Trigger: ACCCCAGGCCTCTGCTCTGGAGCTGCGTGGTTTCCAACATGACCTGAGCAGCCTGCGGCGGTTGGCACAGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS CAA 72 bp CAGTGGATCACCACAGCTGTCAGTGAGGCCCACCACTaGGCCACTGGGTCTGGGCCAGTGGTGGCAGCCATG +
Preference number: 6 (lower is better)
Translates to: QWITTAVSEAHH*ATGSGPVVAAM
Trigger: CATGGCTGCCACCACTGGCCCAGACCCAGTGGCCAAGTGGTGGGCCTCACTGACAGCTGTGGTGATCCACTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS CAA 72 bp GTGGGCCGTGGCTCCAGCTCAGCTGTAGTGCCTCCTTaGCCACTGGAACCTGCCCTCCTCCTCAGACTGCGA +
Preference number: 6 (lower is better)
Translates to: VGRGSSSAVVPP*PLEPALLLRLR
Trigger: TCGCAGTCTGAGGAGGAGGGCAGGTTCCAGTGGCAAAGGAGGCACTACAGCTGAGCTGGAGCCACGGCCCAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
CDS CAA 90 bp GAGCGGTCCAGCATGCCTCGGCTGTGTGAAGGCAGCCGCTGGGCTTaGACCTGGCTATCCTCAAAGGCTGGACTGTCGGGCTCAGAGTCA +
Preference number: 6 (lower is better)
Translates to: ERSSMPRLCEGSRWA*TWLSSKAGLSGSES
Trigger: TGACTCTGAGCCCGACAGTCCAGCCTTTGAGGATAGCCAGGTCAAAGCCCAGCGGCTGCCTTCACACAGCCGAGGCATGCTGGACCGCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS TCA 72 bp TCCAGAGCAGAGGCCTGGGGTCCATTGCTGGTACCGTaGGCTACCTGGACTGAAGCTGGTGACTGCTGCCGC +
Preference number: 6 (lower is better)
Translates to: SRAEAWGPLLVP*ATWTEAGDCCR
Trigger: GCGGCAGCAGTCACCAGCTTCAGTCCAGGTAGCTCACGGTACCAGCAATGGACCCCAGGCCTCTGCTCTGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS GCA 72 bp CTGCACGGCTGTGCCAGGAGCCAGGGTGCTGATGCCTaGAGTCTTCACGGTGGCTCCTGCATCTGTCTTCAC +
Preference number: 6 (lower is better)
Translates to: LHGCARSQGADA*SLHGGSCICLH
Trigger: GTGAAGACAGATGCAGGAGCCACCGTGAAGACTGCAGGCATCAGCACCCTGGCTCCTGGCACAGCCGTGCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS CCA 72 bp CCTCGGCTGTGTGAAGGCAGCCGCTGGGCTTTGACCTaGCTATCCTCAAAGGCTGGACTGTCGGGCTCAGAG +
Preference number: 6 (lower is better)
Translates to: PRLCEGSRWALT*LSSKAGLSGSE
Trigger: CTCTGAGCCCGACAGTCCAGCCTTTGAGGATAGCCAGGTCAAAGCCCAGCGGCTGCCTTCACACAGCCGAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS CCA 72 bp GCCCTGGGCAGGGGTCTCTCAGTGTCCTGCAGCACCTaGGGGATATGCTCTACCAGTGGGTACAAGCGCTCA +
Preference number: 6 (lower is better)
Translates to: ALGRGLSVSCST*GICSTSGYKRS
Trigger: TGAGCGCTTGTACCCACTGGTAGAGCATATCCCCCAGGTGCTGCAGGACACTGAGAGACCCCTGCCCAGGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS CCA 72 bp AAGCGCTCAGCTGCCTCTTCATCCCGCCTCAGCCAGTaGATCACCACAGCTGTCAGTGAGGCCCACCACTTG +
Preference number: 6 (lower is better)
Translates to: KRSAASSSRLSQ*ITTAVSEAHHL
Trigger: CAAGTGGTGGGCCTCACTGACAGCTGTGGTGATCCACTGGCTGAGGCGGGATGAAGAGGCAGCTGAGCGCTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS CCA 72 bp ATGGCCAGGCTGGCTGGGCTAGATTCCACCTTTCTGTaGTCCAGCAGAGCCCGGGCAGCCTTGAAGGAGTAC +
Preference number: 6 (lower is better)
Translates to: MARLAGLDSTFL*SSRARAALKEY
Trigger: GTACTCCTTCAAGGCTGCCCGGGCTCTGCTGGACCACAGAAAGGTGGAATCTAGCCCAGCCAGCCTGGCCAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS CAA 90 bp GCAGCCTGGGGGAAATCTCCCCGGGCCAAATCCAGGTCAGCTTGTTaGCGATGTCTCCAGAAGTGTACAGCCGGGCCAGAGTGTGGCCTA +
Preference number: 6 (lower is better)
Translates to: AAWGKSPRAKSRSAC*RCLQKCTAGPECGL
Trigger: TAGGCCACACTCTGGCCCGGCTGTACACTTCTGGAGACATCGCAAACAAGCTGACCTGGATTTGGCCCGGGGAGATTTCCCCCAGGCTGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS GCA 72 bp AAGACCGGTAGCGCTTCTCAATGGCATTGTGGGCTGTaGGCTTCTCACCACGGCTCTGAGCTGAGCCTAGGG +
Preference number: 6 (lower is better)
Translates to: KTGSASQWHCGL*ASHHGSELSLG
Trigger: CCCTAGGCTCAGCTCAGAGCCGTGGTGAGAAGCGCACAGCCCACAATGCCATTGAGAAGCGCTACCGGTCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS GCA 72 bp CCTCAGGGCCGCTGCCACATAGATCTCTGCCAGTGTTaGCATGGAGATAGCATCTCCTGCGCACTCAGCCAG +
Preference number: 6 (lower is better)
Translates to: PQGRCHIDLCQC*HGDSISCALSQ
Trigger: CTGGCTGAGTGCGCAGGAGATGCTATCTCCATGGCAACACTGGCAGAGATCTATGTGGCAGCGGCCCTGAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS GCA 72 bp TGGCGGGCGCTGCTCAGGAAGAAACGTGTCAAGAAGTaGAGGGCTCTTGGGAGGCTGGTTTTGACCCTCAGG +
Preference number: 6 (lower is better)
Translates to: WRALLRKKRVKK*RALGRLVLTLR
Trigger: CCTGAGGGTCAAAACCAGCCTCCCAAGAGCCCTGCACTTCTTGACACGTTTCTTCCTGAGCAGCGCCCGCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS GCA 72 bp GGGGATATGCTCTACCAGTGGGTACAAGCGCTCAGCTaGCTCTTCATCCCGCCTCAGCCAGTGGATCACCAC +
Preference number: 6 (lower is better)
Translates to: GDMLYQWVQALS*LFIPPQPVDHH
Trigger: GTGGTGATCCACTGGCTGAGGCGGGATGAAGAGGCAGCTGAGCGCTTGTACCCACTGGTAGAGCATATCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS GCA 72 bp AGGGGTCTCTCAGTGTCCTGCAGCACCTGGGGGATATaGTCTACCAGTGGGTACAAGCGCTCAGCTGCCTCT +
Preference number: 6 (lower is better)
Translates to: RGLSVSCSTWGI*STSGYKRSAAS
Trigger: AGAGGCAGCTGAGCGCTTGTACCCACTGGTAGAGCATATCCCCCAGGTGCTGCAGGACACTGAGAGACCCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS CCA 72 bp GCTGAGCCTAGGGCCTTGCTGCCAGCTGCGAGTCGGTaGATGGGCAGTTTGTCTGTGTCCACAACCAAAGGT +
Preference number: 6 (lower is better)
Translates to: AEPRALLPAASR*MGSLSVSTTKG
Trigger: ACCTTTGGTTGTGGACACAGACAAACTGCCCATCCACCGACTCGCAGCTGGCAGCAAGGCCCTAGGCTCAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS CCA 72 bp CTGAGAACTCCCTGTCTCCGTCAGCTGCCCCTGGGCTaGGCTGAGCAATACAGTTCAACGCTCGCTCTAGGA +
Preference number: 6 (lower is better)
Translates to: LRTPCLRQLPLG*AEQYSSTLALG
Trigger: TCCTAGAGCGAGCGTTGAACTGTATTGCTCAGCCCAGCCCAGGGGCAGCTGACGGAGACAGGGAGTTCTCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS CCA 72 bp GTACCCACTGGCCTTCTCACAGATGGCCAGGCTGGCTaGGCTAGATTCCACCTTTCTGTGGTCCAGCAGAGC +
Preference number: 6 (lower is better)
Translates to: VPTGLLTDGQAG*ARFHLSVVQQS
Trigger: GCTCTGCTGGACCACAGAAAGGTGGAATCTAGCCCAGCCAGCCTGGCCATCTGTGAGAAGGCCAGTGGGTAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS CAA 72 bp CTGGGGGAAATCTCCCCGGGCCAAATCCAGGTCAGCTaGTTTGCGATGTCTCCAGAAGTGTACAGCCGGGCC +
Preference number: 6 (lower is better)
Translates to: LGEISPGQIQVS*FAMSPEVYSRA
Trigger: GGCCCGGCTGTACACTTCTGGAGACATCGCAAACAAGCTGACCTGGATTTGGCCCGGGGAGATTTCCCCCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS CAA 90 bp GAGCCTAGGGCCTTGCTGCCAGCTGCGAGTCGGTGGATGGGCAGTTaGTCTGTGTCCACAACCAAAGGTACTGTGGCCAAGATGGTCCCT +
Preference number: 6 (lower is better)
Translates to: EPRALLPAASRWMGS*SVSTTKGTVAKMVP
Trigger: AGGGACCATCTTGGCCACAGTACCTTTGGTTGTGGACACAGACAAACTGCCCATCCACCGACTCGCAGCTGGCAGCAAGGCCCTAGGCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS CAA 90 bp TCAGAGGGAGTGAGAATGCCCCAGCCGAAAAGCGAGGCCAAAGGATaGCAGGTCAGACACAGAAAGGCCAGTACACACAGGGCCAGGCGG +
Preference number: 6 (lower is better)
Translates to: SEGVRMPQPKSEAKG*QVRHRKASTHRARR
Trigger: CCGCCTGGCCCTGTGTGTACTGGCCTTTCTGTGTCTGACCTGCAATCCTTTGGCCTCGCTTTTCGGCTGGGGCATTCTCACTCCCTCTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS CAA 90 bp TTGAGCAGCCTGGGGGAAATCTCCCCGGGCCAAATCCAGGTCAGCTaGTTTGCGATGTCTCCAGAAGTGTACAGCCGGGCCAGAGTGTGG +
Preference number: 6 (lower is better)
Translates to: LSSLGEISPGQIQVS*FAMSPEVYSRARVW
Trigger: CCACACTCTGGCCCGGCTGTACACTTCTGGAGACATCGCAAACAAGCTGACCTGGATTTGGCCCGGGGAGATTTCCCCCAGGCTGCTCAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS TCA 72 bp GTGTCAAGAAGTGCAGGGCTCTTGGGAGGCTGGTTTTaGCCCTCAGGGCCGCTGCCACATAGATCTCTGCCA +
Preference number: 6 (lower is better)
Translates to: VSRSAGLLGGWF*PSGPLPHRSLP
Trigger: TGGCAGAGATCTATGTGGCAGCGGCCCTGAGGGTCAAAACCAGCCTCCCAAGAGCCCTGCACTTCTTGACAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS TCA 72 bp AACTCCCTGTCTCCGTCAGCTGCCCCTGGGCTGGGCTaGGCAATACAGTTCAACGCTCGCTCTAGGAGATGT +
Preference number: 6 (lower is better)
Translates to: NSLSPSAAPGLG*AIQFNARSRRC
Trigger: ACATCTCCTAGAGCGAGCGTTGAACTGTATTGCTCAGCCCAGCCCAGGGGCAGCTGACGGAGACAGGGAGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS CCA 72 bp AGCCTAGGGCCTTGCTGCCAGCTGCGAGTCGGTGGATaGGCAGTTTGTCTGTGTCCACAACCAAAGGTACTG +
Preference number: 6 (lower is better)
Translates to: SLGPCCQLRVGG*AVCLCPQPKVL
Trigger: CAGTACCTTTGGTTGTGGACACAGACAAACTGCCCATCCACCGACTCGCAGCTGGCAGCAAGGCCCTAGGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS CCA 72 bp TGTCTGTGTCCACAACCAAAGGTACTGTGGCCAAGATaGTCCCTCCACTCACCAGGGTCTGCACGGCTGTGC +
Preference number: 6 (lower is better)
Translates to: CLCPQPKVLWPR*SLHSPGSARLC
Trigger: GCACAGCCGTGCAGACCCTGGTGAGTGGAGGGACCATCTTGGCCACAGTACCTTTGGTTGTGGACACAGACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000134660.8
CDS CAA 72 bp GCCTTGCTGCCAGCTGCGAGTCGGTGGATGGGCAGTTaGTCTGTGTCCACAACCAAAGGTACTGTGGCCAAG +
Preference number: 6 (lower is better)
Translates to: ALLPAASRWMGS*SVSTTKGTVAK
Trigger: CTTGGCCACAGTACCTTTGGTTGTGGACACAGACAAACTGCCCATCCACCGACTCGCAGCTGGCAGCAAGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS CAA 72 bp GGGAAATCTCCCCGGGCCAAATCCAGGTCAGCTTGTTaGCGATGTCTCCAGAAGTGTACAGCCGGGCCAGAG +
Preference number: 6 (lower is better)
Translates to: GKSPRAKSRSAC*RCLQKCTAGPE
Trigger: CTCTGGCCCGGCTGTACACTTCTGGAGACATCGCAAACAAGCTGACCTGGATTTGGCCCGGGGAGATTTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS GCA 72 bp CAACCACTGGGTCCAATTAGAGCCATCTCTGCTCTCTaGCTCCAGCATGCTGCGCCCAGAACTACGGTGTGT +
Preference number: 6 (lower is better)
Translates to: QPLGPIRAISAL*LQHAAPRTTVC
Trigger: ACACACCGTAGTTCTGGGCGCAGCATGCTGGAGGCAGAGAGCAGAGATGGCTCTAATTGGACCCAGTGGTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS GCA 72 bp GGAAATCTCCCCGGGCCAAATCCAGGTCAGCTTGTTTaGGATGTCTCCAGAAGTGTACAGCCGGGCCAGAGT +
Preference number: 6 (lower is better)
Translates to: GNLPGPNPGQLV*DVSRSVQPGQS
Trigger: ACTCTGGCCCGGCTGTACACTTCTGGAGACATCGCAAACAAGCTGACCTGGATTTGGCCCGGGGAGATTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS CAA 90 bp GCTCCTGCATCTGTCTTCACAGCTGTCAGCAGCAGTGAGTCTGCCTaGATGAAGTGTGGCTGCAGTACAACTGGGACCTGCTGGACCTGT +
Preference number: 6 (lower is better)
Translates to: APASVFTAVSSSESA*MKCGCSTTGTCWTC
Trigger: ACAGGTCCAGCAGGTCCCAGTTGTACTGCAGCCACACTTCATCAAGGCAGACTCACTGCTGCTGACAGCTGTGAAGACAGATGCAGGAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS CAA 90 bp GCCAGTGTTGCCATGGAGATAGCATCTCCTGCGCACTCAGCCAGGTaGAGGGCACTTAGTGCCAGGTTAGAAGCAGCAAGATGTCCTCCT +
Preference number: 6 (lower is better)
Translates to: ASVAMEIASPAHSAR*RALSARLEAARCPP
Trigger: AGGAGGACATCTTGCTGCTTCTAACCTGGCACTAAGTGCCCTCAACCTGGCTGAGTGCGCAGGAGATGCTATCTCCATGGCAACACTGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS CAA 90 bp GTACGGGCCACAAGAAGTAGATCACACAGGAGCAGCTGCATGGCCTaGTCAATGGAACTGCCAGTTGGTGTAGAGGCTAAGCTGTCCCGC +
Preference number: 6 (lower is better)
Translates to: VRATRSRSHRSSCMA*SMELPVGVEAKLSR
Trigger: GCGGGACAGCTTAGCCTCTACACCAACTGGCAGTTCCATTGACAAGGCCATGCAGCTGCTCCTGTGTGATCTACTTCTTGTGGCCCGTAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS CCA 72 bp TGGGCAGTTTGTCTGTGTCCACAACCAAAGGTACTGTaGCCAAGATGGTCCCTCCACTCACCAGGGTCTGCA +
Preference number: 6 (lower is better)
Translates to: WAVCLCPQPKVL*PRWSLHSPGSA
Trigger: TGCAGACCCTGGTGAGTGGAGGGACCATCTTGGCCACAGTACCTTTGGTTGTGGACACAGACAAACTGCCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS CCA 72 bp GCGATGTCTCCAGAAGTGTACAGCCGGGCCAGAGTGTaGCCTAGTCACAGGTTCCCCATAGACAAAGAGAAG +
Preference number: 6 (lower is better)
Translates to: AMSPEVYSRARV*PSHRFPIDKEK
Trigger: CTTCTCTTTGTCTATGGGGAACCTGTGACTAGGCCACACTCTGGCCCGGCTGTACACTTCTGGAGACATCGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS CAA 72 bp GTGAGAATGCCCCAGCCGAAAAGCGAGGCCAAAGGATaGCAGGTCAGACACAGAAAGGCCAGTACACACAGG +
Preference number: 6 (lower is better)
Translates to: VRMPQPKSEAKG*QVRHRKASTHR
Trigger: CCTGTGTGTACTGGCCTTTCTGTGTCTGACCTGCAATCCTTTGGCCTCGCTTTTCGGCTGGGGCATTCTCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS TCA 72 bp GGCTCCTGCATCTGTCTTCACAGCTGTCAGCAGCAGTaGGTCTGCCTTGATGAAGTGTGGCTGCAGTACAAC +
Preference number: 6 (lower is better)
Translates to: GSCICLHSCQQQ*VCLDEVWLQYN
Trigger: GTTGTACTGCAGCCACACTTCATCAAGGCAGACTCACTGCTGCTGACAGCTGTGAAGACAGATGCAGGAGCC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS GCA 72 bp GCCTTGATGAAGTGTGGCTGCAGTACAACTGGGACCTaGTGGACCTGTGAGGTCACAGTGTTTGTTCTAGGG +
Preference number: 6 (lower is better)
Translates to: ALMKCGCSTTGT*WTCEVTVFVLG
Trigger: CCCTAGAACAAACACTGTGACCTCACAGGTCCAGCAGGTCCCAGTTGTACTGCAGCCACACTTCATCAAGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS CAA 72 bp ATAGGGGGCGTCAAACAGGCCCGGGAAGTCACTGTCTaGGTTGTTGATGAGCTGGAGCATGTCTTCGATGTC +
Preference number: 6 (lower is better)
Translates to: IGGVKQAREVTV*VVDELEHVFDV
Trigger: GACATCGAAGACATGCTCCAGCTCATCAACAACCAAGACAGTGACTTCCCGGGCCTGTTTGACGCCCCCTAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020846.8
CDS CAA 72 bp TCTGTCTTCACAGCTGTCAGCAGCAGTGAGTCTGCCTaGATGAAGTGTGGCTGCAGTACAACTGGGACCTGC +
Preference number: 6 (lower is better)
Translates to: SVFTAVSSSESA*MKCGCSTTGTC
Trigger: GCAGGTCCCAGTTGTACTGCAGCCACACTTCATCAAGGCAGACTCACTGCTGCTGACAGCTGTGAAGACAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS CAA 90 bp ACCCCCAGCATAGGGGGCGTCAAACAGGCCCGGGAAGTCACTGTCTaGGTTGTTGATGAGCTGGAGCATGTCTTCAAATGTGCAATCCAT +
Preference number: 6 (lower is better)
Translates to: TPSIGGVKQAREVTV*VVDELEHVFKCAIH
Trigger: ATGGATTGCACATTTGAAGACATGCTCCAGCTCATCAACAACCAAGACAGTGACTTCCCGGGCCTGTTTGACGCCCCCTATGCTGGGGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000144942.2
CDS GCA 72 bp TTGCTTTTGTGTGCACTTCGTAGGGTCAGGTTCTCCTaGTTGAGCTTCTGGTTGCTGTGCTGCAAGAAGCGG +
Preference number: 6 (lower is better)
Translates to: LLLCALRRVRFS*LSFWLLCCKKR
Trigger: CCGCTTCTTGCAGCACAGCAACCAGAAGCTCAAGCAGGAGAACCTGACCCTACGAAGTGCACACAAAAGCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS GCA 72 bp GTACGGGCCACAAGAAGTAGATCACACAGGAGCAGCTaGATGGCCTTGTCAATGGAACTGCCAGTTGGTGTA +
Preference number: 6 (lower is better)
Translates to: VRATRSRSHRSS*MALSMELPVGV
Trigger: TACACCAACTGGCAGTTCCATTGACAAGGCCATGCAGCTGCTCCTGTGTGATCTACTTCTTGTGGCCCGTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS CCA 72 bp AGGCCCGGGAAGTCACTGTCTTGGTTGTTGATGAGCTaGAGCATGTCTTCGATGTCGTTCAAAACCGCTGTG +
Preference number: 6 (lower is better)
Translates to: RPGKSLSWLLMS*SMSSMSFKTAV
Trigger: CACAGCGGTTTTGAACGACATCGAAGACATGCTCCAGCTCATCAACAACCAAGACAGTGACTTCCCGGGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020846.8
CDS TCA 72 bp TTTTGTGTGCACTTCGTAGGGTCAGGTTCTCCTGCTTaGGCTTCTGGTTGCTGTGCTGCAAGAAGCGGATGT +
Preference number: 6 (lower is better)
Translates to: FCVHFVGSGSPA*ASGCCAARSGC
Trigger: ACATCCGCTTCTTGCAGCACAGCAACCAGAAGCTCAAGCAGGAGAACCTGACCCTACGAAGTGCACACAAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS GCA 72 bp CACTGCCACAAGCTGACACCAGGTCCTTCAGTGATTTaGTTTTGTGTGCACTTCGTAGGGTCAGGTTCTCCT +
Preference number: 6 (lower is better)
Translates to: HCHKLTPGPSVI*FCVHFVGSGSP
Trigger: AGGAGAACCTGACCCTACGAAGTGCACACAAAAGCAAATCACTGAAGGACCTGGTGTCAGCTTGTGGCAGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS CAA 72 bp GCGTCAAACAGGCCCGGGAAGTCACTGTCTTGGTTGTaGATGAGCTGGAGCATGTCTTCGATGTCGTTCAAA +
Preference number: 6 (lower is better)
Translates to: ASNRPGKSLSWL*MSWSMSSMSFK
Trigger: TTTGAACGACATCGAAGACATGCTCCAGCTCATCAACAACCAAGACAGTGACTTCCCGGGCCTGTTTGACGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020846.8
CDS CAA 72 bp CCACAAGCTGACACCAGGTCCTTCAGTGATTTGCTTTaGTGTGCACTTCGTAGGGTCAGGTTCTCCTGCTTG +
Preference number: 6 (lower is better)
Translates to: PQADTRSFSDLL*CALRRVRFSCL
Trigger: CAAGCAGGAGAACCTGACCCTACGAAGTGCACACAAAAGCAAATCACTGAAGGACCTGGTGTCAGCTTGTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS CAA 72 bp GCGTCAAACAGGCCCGGGAAGTCACTGTCTTGGTTGTaGATGAGCTGGAGCATGTCTTCAAATGTGCAATCC +
Preference number: 6 (lower is better)
Translates to: ASNRPGKSLSWL*MSWSMSSNVQS
Trigger: GGATTGCACATTTGAAGACATGCTCCAGCTCATCAACAACCAAGACAGTGACTTCCCGGGCCTGTTTGACGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000144942.2
CDS CAA 72 bp ATAGGGGGCGTCAAACAGGCCCGGGAAGTCACTGTCTaGGTTGTTGATGAGCTGGAGCATGTCTTCAAATGT +
Preference number: 6 (lower is better)
Translates to: IGGVKQAREVTV*VVDELEHVFKC
Trigger: ACATTTGAAGACATGCTCCAGCTCATCAACAACCAAGACAGTGACTTCCCGGGCCTGTTTGACGCCCCCTAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000144942.2
CDS GCA 72 bp TGCTGTGCTGCAAGAAGCGGATGTAGTCGATGGCCTTaGGCAAGACAGCAGATTTATTCAGCTTTGCTTCAG +
Preference number: 6 (lower is better)
Translates to: CCAARSGCSRWP*ARQQIYSALLQ
Trigger: CTGAAGCAAAGCTGAATAAATCTGCTGTCTTGCGCAAGGCCATCGACTACATCCGCTTCTTGCAGCACAGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2
CDS CAA 72 bp ACAAGAAGTAGATCACACAGGAGCAGCTGCATGGCCTaGTCAATGGAACTGCCAGTTGGTGTAGAGGCTAAG +
Preference number: 6 (lower is better)
Translates to: TRSRSHRSSCMA*SMELPVGVEAK
Trigger: CTTAGCCTCTACACCAACTGGCAGTTCCATTGACAAGGCCATGCAGCTGCTCCTGTGTGATCTACTTCTTGT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020846.8
ENSMUST00000134660.8
ENSMUST00000144942.2