RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SRD5A3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000029233

Ensembl transcript IDs: ENSMUST00000031143.13, ENSMUST00000113506.2, ENSMUST00000113507.8

Found 66 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR CCA 90 bp CGATCCTGCAAGCCTAGGTCTGCTGGAATGTGTTCTCCAGGAATAACGCCTCGCGCAGAAAGTGTACTTTaGTCTCTGTCTCAGTGCCTC +
Preference number: 2 (lower is better)
Translates to: RSCKPRSAGMCSPGITPRAESVL*SLSQCL
Trigger: GAGGCACTGAGACAGAGACCAAAGTACACTTTCTGC...GCGAGGCGTTATTCCTGGAGAACACATTCCAGCAGACCTAGGCTTGCAGGATCG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031143.13
ENSMUST00000113506.2
ENSMUST00000113507.8
3UTR-3UTR CCA 90 bp ATGCACAGCTGTTTATACTGGTTAGTGCGGCCAGAAAGCAGTTTGGAGACACCCGCAGAAAGTGTACTTTaGTCTCTGTCTCAGTGCCTC +
Preference number: 2 (lower is better)
Translates to: MHSCLYWLVRPESSLETPAESVL*SLSQCL
Trigger: GAGGCACTGAGACAGAGACCAAAGTACACTTTCTGC...GGGTGTCTCCAAACTGCTTTCTGGCCGCACTAACCAGTATAAACAGCTGTGCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031143.13
ENSMUST00000113506.2
ENSMUST00000113507.8
3UTR CAA 90 bp TCCATGCACAGCTGTTTATACTGGTTAGTGCGGCCAGAAAGCAGTTaGGAGACACCCGTTTACTTGTTATCAGTTAGCTCTGTAAAGCTT +
Preference number: 2 (lower is better)
Translates to: SMHSCLYWLVRPESS*ETPVYLLSVSSVKL
Trigger: AAGCTTTACAGAGCTAACTGATAACAAGTAAACGGGTGTCTCCAAACTGCTTTCTGGCCGCACTAACCAGTATAAACAGCTGTGCATGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031143.13
ENSMUST00000113506.2
ENSMUST00000113507.8
3UTR CAA 90 bp CAAAAAGAGAATTCCATCAAAGAAGTTTCTAAACTTATTATTAGGTaGGTTGCAGGGCAAGTGAGGGAGTGGGGCTATAACGGGAGATAT +
Preference number: 2 (lower is better)
Translates to: QKENSIKEVSKLIIR*VAGQVREWGYNGRY
Trigger: ATATCTCCCGTTATAGCCCCACTCCCTCACTTGCCCTGCAACCAACCTAATAATAAGTTTAGAAACTTCTTTGATGGAATTCTCTTTTTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031143.13
3UTR-3UTR CAA 90 bp TGGCAGAAAGCCGATCCTGCAAGCCTAGGTCTGCTGGAATGTGTTCTCCAGGAACGCAGAAAGTGTACTTaGGTCTCTGTCTCAGTGCCT +
Preference number: 3 (lower is better)
Translates to: WQKADPASLGLLECVLQERRKCT*VSVSVP
Trigger: AGGCACTGAGACAGAGACCAAAGTACACTTTCTGCG...TTCCTGGAGAACACATTCCAGCAGACCTAGGCTTGCAGGATCGGCTTTCTGCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031143.13
ENSMUST00000113506.2
ENSMUST00000113507.8
3UTR-3UTR CAA 90 bp GAGAGAGAGAGAGAGAGACTGACTCAAGCATGCATGTATCCATGCACAGCTGTTCGCAGAAAGTGTACTTaGGTCTCTGTCTCAGTGCCT +
Preference number: 3 (lower is better)
Translates to: ERERERLTQACMYPCTAVRRKCT*VSVSVP
Trigger: AGGCACTGAGACAGAGACCAAAGTACACTTTCTGCG...AACAGCTGTGCATGGATACATGCATGCTTGAGTCAGTCTCTCTCTCTCTCTCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031143.13
ENSMUST00000113506.2
ENSMUST00000113507.8
3UTR CCA 72 bp TCAAGCATGCATGTATCCATGCACAGCTGTTTATACTaGTTAGTGCGGCCAGAAAGCAGTTTGGAGACACCC +
Preference number: 3 (lower is better)
Translates to: SSMHVSMHSCLY*LVRPESSLETP
Trigger: GGGTGTCTCCAAACTGCTTTCTGGCCGCACTAACCAGTATAAACAGCTGTGCATGGATACATGCATGCTTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031143.13
ENSMUST00000113506.2
ENSMUST00000113507.8
3UTR-3UTR CAA 90 bp GAAGTTTCTAAACTTATTATTAGGTTGGTTGCAGGGCAAGTGAGGGAGTGGGGCCGCAGAAAGTGTACTTaGGTCTCTGTCTCAGTGCCT +
Preference number: 3 (lower is better)
Translates to: EVSKLIIRLVAGQVREWGRRKCT*VSVSVP
Trigger: AGGCACTGAGACAGAGACCAAAGTACACTTTCTGCG...GCCCCACTCCCTCACTTGCCCTGCAACCAACCTAATAATAAGTTTAGAAACTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031143.13
3UTR CCA 72 bp AGAATGTTAACTCACTCCAACAAACTCTTTACTCCCTaGAACCACCGGTCTGATACTGTACATTCATATTAT +
Preference number: 3 (lower is better)
Translates to: RMLTHSNKLFTP*NHRSDTVHSYY
Trigger: ATAATATGAATGTACAGTATCAGACCGGTGGTTCCAGGGAGTAAAGAGTTTGTTGGAGTGAGTTAACATTCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031143.13
CDS-3UTR GCA 90 bp TGGCAGAAAGCCGATCCTGCAAGCCTAGGTCTGCTGGAATGTGTTCTCCAGGAACCAAAGGGGATCCGGTaGTGGCAGTGGATGACCACA +
Preference number: 4 (lower is better)
Translates to: WQKADPASLGLLECVLQEPKGIR*WQWMTT
Trigger: TGTGGTCATCCACTGCCAGCACCGGATCCCCTTTGG...TTCCTGGAGAACACATTCCAGCAGACCTAGGCTTGCAGGATCGGCTTTCTGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031143.13
ENSMUST00000113506.2
ENSMUST00000113507.8
CDS-3UTR CCA 90 bp CGATCCTGCAAGCCTAGGTCTGCTGGAATGTGTTCTCCAGGAATAACGCCTCGCCACCAGGTTAAGTTGTaGAGCCCAAAGGTGACAGCC +
Preference number: 4 (lower is better)
Translates to: RSCKPRSAGMCSPGITPRHQVKL*SPKVTA
Trigger: GGCTGTCACCTTTGGGCTCCACAACTTAACCTGGTG...GCGAGGCGTTATTCCTGGAGAACACATTCCAGCAGACCTAGGCTTGCAGGATCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031143.13
ENSMUST00000113506.2
ENSMUST00000113507.8
CDS-3UTR TCA 90 bp TGGCAGAAAGCCGATCCTGCAAGCCTAGGTCTGCTGGAATGTGTTCTCCAGGAATGTGGAGCCCAAAGGTaGCAGCCATGGAGATGTAGA +
Preference number: 4 (lower is better)
Translates to: WQKADPASLGLLECVLQECGAQR*QPWRCR
Trigger: TCTACATCTCCATGGCTGTCACCTTTGGGCTCCACA...TTCCTGGAGAACACATTCCAGCAGACCTAGGCTTGCAGGATCGGCTTTCTGCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031143.13
ENSMUST00000113506.2
ENSMUST00000113507.8
CDS-3UTR GCA 90 bp GTGCAGTTAACTGTTCCCACAGCTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCCAAAGGGGATCCGGTaGTGGCAGTGGATGACCACA +
Preference number: 4 (lower is better)
Translates to: VQLTVPTAREREREREREPKGIR*WQWMTT
Trigger: TGTGGTCATCCACTGCCAGCACCGGATCCCCTTTGG...CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAGCTGTGGGAACAGTTAACTGCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031143.13
ENSMUST00000113506.2
ENSMUST00000113507.8
CDS-3UTR GCA 90 bp ATGCACAGCTGTTTATACTGGTTAGTGCGGCCAGAAAGCAGTTTGGAGACACCCCCAAAGGGGATCCGGTaGTGGCAGTGGATGACCACA +
Preference number: 4 (lower is better)
Translates to: MHSCLYWLVRPESSLETPPKGIR*WQWMTT
Trigger: TGTGGTCATCCACTGCCAGCACCGGATCCCCTTTGG...GGGTGTCTCCAAACTGCTTTCTGGCCGCACTAACCAGTATAAACAGCTGTGCAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031143.13
ENSMUST00000113506.2
ENSMUST00000113507.8
CDS-3UTR CCA 90 bp ACTCACTCCAACAAACTCTTTACTCCCTGGAACCACCGGTCTGATACTGTACATGCGAGCCGGACTGCTTaGTCTTCCCGTAGCGGAGCA +
Preference number: 4 (lower is better)
Translates to: THSNKLFTPWNHRSDTVHASRTA*SSRSGA
Trigger: TGCTCCGCTACGGGAAGACCAAGCAGTCCGGCTCGC...ATGTACAGTATCAGACCGGTGGTTCCAGGGAGTAAAGAGTTTGTTGGAGTGAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031143.13
CDS-3UTR CCA 90 bp GAGAGAGAGAGAGAGAGACTGACTCAAGCATGCATGTATCCATGCACAGCTGTTAGCCAGCTCAGCCGCTaGCATCCGAGAAGCCTTGGA +
Preference number: 4 (lower is better)
Translates to: ERERERLTQACMYPCTAVSQLSR*HPRSLG
Trigger: TCCAAGGCTTCTCGGATGCCAGCGGCTGAGCTGGCT...AACAGCTGTGCATGGATACATGCATGCTTGAGTCAGTCTCTCTCTCTCTCTCTC
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031143.13
ENSMUST00000113506.2
ENSMUST00000113507.8
CDS-3UTR GCA 90 bp TGGCAGAAAGCCGATCCTGCAAGCCTAGGTCTGCTGGAATGTGTTCTCCAGGAACTTGTGGTTGAAGAATaGGGACAAGGCTTGGCTGGA +
Preference number: 4 (lower is better)
Translates to: WQKADPASLGLLECVLQELVVEE*GQGLAG
Trigger: TCCAGCCAAGCCTTGTCCGCATTCTTCAACCACAAG...TTCCTGGAGAACACATTCCAGCAGACCTAGGCTTGCAGGATCGGCTTTCTGCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031143.13
ENSMUST00000113506.2
ENSMUST00000113507.8
CDS-3UTR CCA 90 bp TGGCAGAAAGCCGATCCTGCAAGCCTAGGTCTGCTGGAATGTGTTCTCCAGGAAAGCACTAAGCCAGTTTaGAAAAGGTGCTCCCAGGAA +
Preference number: 4 (lower is better)
Translates to: WQKADPASLGLLECVLQESTKPV*KRCSQE
Trigger: TTCCTGGGAGCACCTTTTCCAAACTGGCTTAGTGCT...TTCCTGGAGAACACATTCCAGCAGACCTAGGCTTGCAGGATCGGCTTTCTGCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031143.13
CDS-3UTR CCA 90 bp CGATCCTGCAAGCCTAGGTCTGCTGGAATGTGTTCTCCAGGAATAACGCCTCGCCATTCTTATCATCCATaGGCACTTGGCTCAGTACAG +
Preference number: 4 (lower is better)
Translates to: RSCKPRSAGMCSPGITPRHSYHP*ALGSVQ
Trigger: CTGTACTGAGCCAAGTGCCCATGGATGATAAGAATG...GCGAGGCGTTATTCCTGGAGAACACATTCCAGCAGACCTAGGCTTGCAGGATCG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031143.13
ENSMUST00000113506.2
ENSMUST00000113507.8
CDS-3UTR CCA 90 bp GTGCAGTTAACTGTTCCCACAGCTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGGACAAGGCTTGGCTaGAGAAGACATACGTCACCA +
Preference number: 4 (lower is better)
Translates to: VQLTVPTARERERERERERTRLG*RRHTSP
Trigger: TGGTGACGTATGTCTTCTCCAGCCAAGCCTTGTCCG...CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAGCTGTGGGAACAGTTAACTGCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031143.13
ENSMUST00000113506.2
ENSMUST00000113507.8
CDS-3UTR GCA 90 bp GTGCAGTTAACTGTTCCCACAGCTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAACATCACCATaGCCAGGATGTGGAACCACC +
Preference number: 4 (lower is better)
Translates to: VQLTVPTARERERERERERRTSP*PGCGTT
Trigger: GGTGGTTCCACATCCTGGGCATGGTGATGTTCTTCT...CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAGCTGTGGGAACAGTTAACTGCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031143.13
ENSMUST00000113506.2
ENSMUST00000113507.8
CDS-3UTR CCA 90 bp TTAGTGCGGCCAGAAAGCAGTTTGGAGACACCCGTTTACTTGTTATCAGTTAGCGCATCCGAGAAGCCTTaGACTCCATCTCCAGGGCTT +
Preference number: 4 (lower is better)
Translates to: LVRPESSLETPVYLLSVSASEKP*TPSPGL
Trigger: AAGCCCTGGAGATGGAGTCCAAGGCTTCTCGGATGC...GCTAACTGATAACAAGTAAACGGGTGTCTCCAAACTGCTTTCTGGCCGCACTAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031143.13
CDS-3UTR CCA 90 bp CCAGAAAGCAGTTTGGAGACACCCGTTTACTTGTTATCAGTTAGCTCTGTAAAGAGCCAGCTCAGCCGCTaGCATCCGAGAAGCCTTGGA +
Preference number: 4 (lower is better)
Translates to: PESSLETPVYLLSVSSVKSQLSR*HPRSLG
Trigger: TCCAAGGCTTCTCGGATGCCAGCGGCTGAGCTGGCT...CTTTACAGAGCTAACTGATAACAAGTAAACGGGTGTCTCCAAACTGCTTTCTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031143.13
ENSMUST00000113506.2
ENSMUST00000113507.8
CDS-3UTR TCA 90 bp AGAGAGAGAGAGAGACTGACTCAAGCATGCATGTATCCATGCACAGCTGTTTATCCCAGGAACAACGACTaGGAAAGTAGCCAGAGCAGG +
Preference number: 4 (lower is better)
Translates to: RERERLTQACMYPCTAVYPRNND*ESSQSR
Trigger: CCTGCTCTGGCTACTTTCTCAGTCGTTGTTCCTGGG...ATAAACAGCTGTGCATGGATACATGCATGCTTGAGTCAGTCTCTCTCTCTCTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031143.13
CDS-3UTR TCA 90 bp TTAGTGCGGCCAGAAAGCAGTTTGGAGACACCCGTTTACTTGTTATCAGTTAGCTGTGGAGCCCAAAGGTaGCAGCCATGGAGATGTAGA +
Preference number: 4 (lower is better)
Translates to: LVRPESSLETPVYLLSVSCGAQR*QPWRCR
Trigger: TCTACATCTCCATGGCTGTCACCTTTGGGCTCCACA...GCTAACTGATAACAAGTAAACGGGTGTCTCCAAACTGCTTTCTGGCCGCACTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031143.13
ENSMUST00000113506.2
ENSMUST00000113507.8
CDS-3UTR CCA 90 bp TTAACTGTTCCCACAGCTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCACCAGGTTAAGTTGTaGAGCCCAAAGGTGACAGCC +
Preference number: 4 (lower is better)
Translates to: LTVPTARERERERERERDHQVKL*SPKVTA
Trigger: GGCTGTCACCTTTGGGCTCCACAACTTAACCTGGTG...ATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAGCTGTGGGAACAGTTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031143.13
ENSMUST00000113506.2
ENSMUST00000113507.8
CDS-3UTR CCA 90 bp TGGTTAGTGCGGCCAGAAAGCAGTTTGGAGACACCCGTTTACTTGTTATCAGTTCGGACAAGGCTTGGCTaGAGAAGACATACGTCACCA +
Preference number: 4 (lower is better)
Translates to: WLVRPESSLETPVYLLSVRTRLG*RRHTSP
Trigger: TGGTGACGTATGTCTTCTCCAGCCAAGCCTTGTCCG...AACTGATAACAAGTAAACGGGTGTCTCCAAACTGCTTTCTGGCCGCACTAACCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031143.13
ENSMUST00000113506.2
ENSMUST00000113507.8
CDS-3UTR TCA 90 bp GAGAGAGAGAGACTGACTCAAGCATGCATGTATCCATGCACAGCTGTTTATACTTGTGGAGCCCAAAGGTaGCAGCCATGGAGATGTAGA +
Preference number: 4 (lower is better)
Translates to: ERERLTQACMYPCTAVYTCGAQR*QPWRCR
Trigger: TCTACATCTCCATGGCTGTCACCTTTGGGCTCCACA...AGTATAAACAGCTGTGCATGGATACATGCATGCTTGAGTCAGTCTCTCTCTCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031143.13
ENSMUST00000113506.2
ENSMUST00000113507.8
CDS-3UTR GCA 90 bp GTGCAGTTAACTGTTCCCACAGCTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCACAACGTGAATGGCTaGATTAGAGAAGACACTGAC +
Preference number: 4 (lower is better)
Translates to: VQLTVPTAREREREREREHNVNG*IREDTD
Trigger: GTCAGTGTCTTCTCTAATGCAGCCATTCACGTTGTG...CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAGCTGTGGGAACAGTTAACTGCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031143.13
ENSMUST00000113506.2
ENSMUST00000113507.8
CDS-3UTR GCA 90 bp TGGTTAGTGCGGCCAGAAAGCAGTTTGGAGACACCCGTTTACTTGTTATCAGTTCTTGTGGTTGAAGAATaGGGACAAGGCTTGGCTGGA +
Preference number: 4 (lower is better)
Translates to: WLVRPESSLETPVYLLSVLVVEE*GQGLAG
Trigger: TCCAGCCAAGCCTTGTCCGCATTCTTCAACCACAAG...AACTGATAACAAGTAAACGGGTGTCTCCAAACTGCTTTCTGGCCGCACTAACCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031143.13
ENSMUST00000113506.2
ENSMUST00000113507.8
CDS-3UTR CCA 90 bp TCTAAACTTATTATTAGGTTGGTTGCAGGGCAAGTGAGGGAGTGGGGCTATAACCACCAGGTTAAGTTGTaGAGCCCAAAGGTGACAGCC +
Preference number: 4 (lower is better)
Translates to: SKLIIRLVAGQVREWGYNHQVKL*SPKVTA
Trigger: GGCTGTCACCTTTGGGCTCCACAACTTAACCTGGTG...GTTATAGCCCCACTCCCTCACTTGCCCTGCAACCAACCTAATAATAAGTTTAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031143.13
CDS-3UTR GCA 90 bp TCTAAACTTATTATTAGGTTGGTTGCAGGGCAAGTGAGGGAGTGGGGCTATAACCCAGTTTGGAAAAGGTaGTCCCAGGAACAACGACTG +
Preference number: 4 (lower is better)
Translates to: SKLIIRLVAGQVREWGYNPVWKR*SQEQRL
Trigger: CAGTCGTTGTTCCTGGGAGCACCTTTTCCAAACTGG...GTTATAGCCCCACTCCCTCACTTGCCCTGCAACCAACCTAATAATAAGTTTAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031143.13
CDS-3UTR GCA 90 bp GAGAGAGAGAGAGAGAGACTGACTCAAGCATGCATGTATCCATGCACAGCTGTTCACAACGTGAATGGCTaGATTAGAGAAGACACTGAC +
Preference number: 4 (lower is better)
Translates to: ERERERLTQACMYPCTAVHNVNG*IREDTD
Trigger: GTCAGTGTCTTCTCTAATGCAGCCATTCACGTTGTG...AACAGCTGTGCATGGATACATGCATGCTTGAGTCAGTCTCTCTCTCTCTCTCTC
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031143.13
ENSMUST00000113506.2
ENSMUST00000113507.8
CDS-3UTR GCA 90 bp AGAGAGAGAGAGAGACTGACTCAAGCATGCATGTATCCATGCACAGCTGTTTATCTTGTGGTTGAAGAATaGGGACAAGGCTTGGCTGGA +
Preference number: 4 (lower is better)
Translates to: RERERLTQACMYPCTAVYLVVEE*GQGLAG
Trigger: TCCAGCCAAGCCTTGTCCGCATTCTTCAACCACAAG...ATAAACAGCTGTGCATGGATACATGCATGCTTGAGTCAGTCTCTCTCTCTCTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031143.13
ENSMUST00000113506.2
ENSMUST00000113507.8
CDS-3UTR CCA 90 bp CCAGAAAGCAGTTTGGAGACACCCGTTTACTTGTTATCAGTTAGCTCTGTAAAGCGGACAAGGCTTGGCTaGAGAAGACATACGTCACCA +
Preference number: 4 (lower is better)
Translates to: PESSLETPVYLLSVSSVKRTRLG*RRHTSP
Trigger: TGGTGACGTATGTCTTCTCCAGCCAAGCCTTGTCCG...CTTTACAGAGCTAACTGATAACAAGTAAACGGGTGTCTCCAAACTGCTTTCTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031143.13
ENSMUST00000113506.2
ENSMUST00000113507.8
3UTR CAA 72 bp GTGCGGCCAGAAAGCAGTTTGGAGACACCCGTTTACTaGTTATCAGTTAGCTCTGTAAAGCTTGGCAGAAAG +
Preference number: 4 (lower is better)
Translates to: VRPESSLETPVY*LSVSSVKLGRK
Trigger: CTTTCTGCCAAGCTTTACAGAGCTAACTGATAACAAGTAAACGGGTGTCTCCAAACTGCTTTCTGGCCGCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031143.13
ENSMUST00000113506.2
ENSMUST00000113507.8
CDS-3UTR GCA 90 bp ACTGACTCAAGCATGCATGTATCCATGCACAGCTGTTTATACTGGTTAGTGCGGCACAACGTGAATGGCTaGATTAGAGAAGACACTGAC +
Preference number: 4 (lower is better)
Translates to: TDSSMHVSMHSCLYWLVRHNVNG*IREDTD
Trigger: GTCAGTGTCTTCTCTAATGCAGCCATTCACGTTGTG...CCGCACTAACCAGTATAAACAGCTGTGCATGGATACATGCATGCTTGAGTCAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031143.13
ENSMUST00000113506.2
ENSMUST00000113507.8
CDS-3UTR CCA 90 bp ACTGACTCAAGCATGCATGTATCCATGCACAGCTGTTTATACTGGTTAGTGCGGCATTCTTATCATCCATaGGCACTTGGCTCAGTACAG +
Preference number: 4 (lower is better)
Translates to: TDSSMHVSMHSCLYWLVRHSYHP*ALGSVQ
Trigger: CTGTACTGAGCCAAGTGCCCATGGATGATAAGAATG...CCGCACTAACCAGTATAAACAGCTGTGCATGGATACATGCATGCTTGAGTCAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031143.13
ENSMUST00000113506.2
ENSMUST00000113507.8
CDS-3UTR GCA 90 bp TTAGTGCGGCCAGAAAGCAGTTTGGAGACACCCGTTTACTTGTTATCAGTTAGCGGTAGGAGACAAATGTaGTTCTGTAGAACTTGTGGT +
Preference number: 4 (lower is better)
Translates to: LVRPESSLETPVYLLSVSGRRQM*FCRTCG
Trigger: ACCACAAGTTCTACAGAAGCACATTTGTCTCCTACC...GCTAACTGATAACAAGTAAACGGGTGTCTCCAAACTGCTTTCTGGCCGCACTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031143.13
ENSMUST00000113506.2
ENSMUST00000113507.8
CDS-3UTR GCA 90 bp TCTAAACTTATTATTAGGTTGGTTGCAGGGCAAGTGAGGGAGTGGGGCTATAACGGTAGGAGACAAATGTaGTTCTGTAGAACTTGTGGT +
Preference number: 4 (lower is better)
Translates to: SKLIIRLVAGQVREWGYNGRRQM*FCRTCG
Trigger: ACCACAAGTTCTACAGAAGCACATTTGTCTCCTACC...GTTATAGCCCCACTCCCTCACTTGCCCTGCAACCAACCTAATAATAAGTTTAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031143.13
CDS-3UTR CCA 90 bp CCAGAAAGCAGTTTGGAGACACCCGTTTACTTGTTATCAGTTAGCTCTGTAAAGCATTCTTATCATCCATaGGCACTTGGCTCAGTACAG +
Preference number: 4 (lower is better)
Translates to: PESSLETPVYLLSVSSVKHSYHP*ALGSVQ
Trigger: CTGTACTGAGCCAAGTGCCCATGGATGATAAGAATG...CTTTACAGAGCTAACTGATAACAAGTAAACGGGTGTCTCCAAACTGCTTTCTGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031143.13
ENSMUST00000113506.2
ENSMUST00000113507.8
3UTR CAA 72 bp AATTCCATCAAAGAAGTTTCTAAACTTATTATTAGGTaGGTTGCAGGGCAAGTGAGGGAGTGGGGCTATAAC +
Preference number: 4 (lower is better)
Translates to: NSIKEVSKLIIR*VAGQVREWGYN
Trigger: GTTATAGCCCCACTCCCTCACTTGCCCTGCAACCAACCTAATAATAAGTTTAGAAACTTCTTTGATGGAATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031143.13
CDS CCA 90 bp TCAGCCGCTGGCATCCGAGAAGCCTTGGACTCCATCTCCAGGGCTTaGAACTGTGTGGCCCCAAGAGTTCTGAGCAGAGCACTAAGCCAG +
Preference number: 5 (lower is better)
Translates to: SAAGIREALDSISRA*NCVAPRVLSRALSQ
Trigger: CTGGCTTAGTGCTCTGCTCAGAACTCTTGGGGCCACACAGTTCCAAGCCCTGGAGATGGAGTCCAAGGCTTCTCGGATGCCAGCGGCTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031143.13
CDS-3UTR CAA 90 bp TGGCAGAAAGCCGATCCTGCAAGCCTAGGTCTGCTGGAATGTGTTCTCCAGGAAGAATGCGGACAAGGCTaGGCTGGAGAAGACATACGT +
Preference number: 5 (lower is better)
Translates to: WQKADPASLGLLECVLQEECGQG*AGEDIR
Trigger: ACGTATGTCTTCTCCAGCCAAGCCTTGTCCGCATTC...TTCCTGGAGAACACATTCCAGCAGACCTAGGCTTGCAGGATCGGCTTTCTGCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031143.13
ENSMUST00000113506.2
ENSMUST00000113507.8
CDS-3UTR CAA 90 bp CACTCCAACAAACTCTTTACTCCCTGGAACCACCGGTCTGATACTGTACATTCACTCCATCTCCAGGGCTaGGAACTGTGTGGCCCCAAG +
Preference number: 5 (lower is better)
Translates to: HSNKLFTPWNHRSDTVHSLHLQG*ELCGPK
Trigger: CTTGGGGCCACACAGTTCCAAGCCCTGGAGATGGAG...TGAATGTACAGTATCAGACCGGTGGTTCCAGGGAGTAAAGAGTTTGTTGGAGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031143.13
CDS-3UTR CAA 90 bp GAGAGAGAGAGACTGACTCAAGCATGCATGTATCCATGCACAGCTGTTTATACTGGCATCCGAGAAGCCTaGGACTCCATCTCCAGGGCT +
Preference number: 5 (lower is better)
Translates to: ERERLTQACMYPCTAVYTGIREA*DSISRA
Trigger: AGCCCTGGAGATGGAGTCCAAGGCTTCTCGGATGCC...AGTATAAACAGCTGTGCATGGATACATGCATGCTTGAGTCAGTCTCTCTCTCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031143.13
CDS-3UTR CAA 90 bp CGATCCTGCAAGCCTAGGTCTGCTGGAATGTGTTCTCCAGGAATAACGCCTCGCATGACCACACCTTTTTaGTTTCTCCTGAGGTTGCTG +
Preference number: 5 (lower is better)
Translates to: RSCKPRSAGMCSPGITPRMTTPF*FLLRLL
Trigger: CAGCAACCTCAGGAGAAACAAAAAAGGTGTGGTCAT...GCGAGGCGTTATTCCTGGAGAACACATTCCAGCAGACCTAGGCTTGCAGGATCG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000031143.13
ENSMUST00000113506.2
ENSMUST00000113507.8
CDS-3UTR CAA 90 bp CACTCCAACAAACTCTTTACTCCCTGGAACCACCGGTCTGATACTGTACATTCAATCATCCATGGGCACTaGGCTCAGTACAGTCAGGCC +
Preference number: 5 (lower is better)
Translates to: HSNKLFTPWNHRSDTVHSIIHGH*AQYSQA
Trigger: GGCCTGACTGTACTGAGCCAAGTGCCCATGGATGAT...TGAATGTACAGTATCAGACCGGTGGTTCCAGGGAGTAAAGAGTTTGTTGGAGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031143.13
CDS-3UTR CAA 90 bp GAGAGAGAGAGAGAGAGACTGACTCAAGCATGCATGTATCCATGCACAGCTGTTGAATGCGGACAAGGCTaGGCTGGAGAAGACATACGT +
Preference number: 5 (lower is better)
Translates to: ERERERLTQACMYPCTAVECGQG*AGEDIR
Trigger: ACGTATGTCTTCTCCAGCCAAGCCTTGTCCGCATTC...AACAGCTGTGCATGGATACATGCATGCTTGAGTCAGTCTCTCTCTCTCTCTCTC
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031143.13
ENSMUST00000113506.2
ENSMUST00000113507.8
CDS-3UTR CAA 90 bp GAGAGAGAGAGACTGACTCAAGCATGCATGTATCCATGCACAGCTGTTTATACTATCATCCATGGGCACTaGGCTCAGTACAGTCAGGCC +
Preference number: 5 (lower is better)
Translates to: ERERLTQACMYPCTAVYTIIHGH*AQYSQA
Trigger: GGCCTGACTGTACTGAGCCAAGTGCCCATGGATGAT...AGTATAAACAGCTGTGCATGGATACATGCATGCTTGAGTCAGTCTCTCTCTCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031143.13
ENSMUST00000113506.2
ENSMUST00000113507.8
CDS-3UTR CAA 90 bp GAAGTTTCTAAACTTATTATTAGGTTGGTTGCAGGGCAAGTGAGGGAGTGGGGCAGCCACCAGGTTAAGTaGTGGAGCCCAAAGGTGACA +
Preference number: 5 (lower is better)
Translates to: EVSKLIIRLVAGQVREWGSHQVK*WSPKVT
Trigger: TGTCACCTTTGGGCTCCACAACTTAACCTGGTGGCT...GCCCCACTCCCTCACTTGCCCTGCAACCAACCTAATAATAAGTTTAGAAACTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031143.13
CDS-3UTR CAA 90 bp TTAGTGCGGCCAGAAAGCAGTTTGGAGACACCCGTTTACTTGTTATCAGTTAGCAGCCACCAGGTTAAGTaGTGGAGCCCAAAGGTGACA +
Preference number: 5 (lower is better)
Translates to: LVRPESSLETPVYLLSVSSHQVK*WSPKVT
Trigger: TGTCACCTTTGGGCTCCACAACTTAACCTGGTGGCT...GCTAACTGATAACAAGTAAACGGGTGTCTCCAAACTGCTTTCTGGCCGCACTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031143.13
ENSMUST00000113506.2
ENSMUST00000113507.8
CDS-3UTR CAA 90 bp ACTGACTCAAGCATGCATGTATCCATGCACAGCTGTTTATACTGGTTAGTGCGGGAATGCGGACAAGGCTaGGCTGGAGAAGACATACGT +
Preference number: 5 (lower is better)
Translates to: TDSSMHVSMHSCLYWLVRECGQG*AGEDIR
Trigger: ACGTATGTCTTCTCCAGCCAAGCCTTGTCCGCATTC...CCGCACTAACCAGTATAAACAGCTGTGCATGGATACATGCATGCTTGAGTCAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031143.13
ENSMUST00000113506.2
ENSMUST00000113507.8
CDS-3UTR CAA 90 bp CCAGAAAGCAGTTTGGAGACACCCGTTTACTTGTTATCAGTTAGCTCTGTAAAGATCATCCATGGGCACTaGGCTCAGTACAGTCAGGCC +
Preference number: 5 (lower is better)
Translates to: PESSLETPVYLLSVSSVKIIHGH*AQYSQA
Trigger: GGCCTGACTGTACTGAGCCAAGTGCCCATGGATGAT...CTTTACAGAGCTAACTGATAACAAGTAAACGGGTGTCTCCAAACTGCTTTCTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031143.13
ENSMUST00000113506.2
ENSMUST00000113507.8
CDS TCA 90 bp TATGCTTTGGGTAGGAGACAAATGTGCTTCTGTAGAACTTGTGGTTaGAGAATGCGGACAAGGCTTGGCTGGAGAAGACATACGTCACCA +
Preference number: 5 (lower is better)
Translates to: YALGRRQMCFCRTCG*RMRTRLGWRRHTSP
Trigger: TGGTGACGTATGTCTTCTCCAGCCAAGCCTTGTCCGCATTCTTCAACCACAAGTTCTACAGAAGCACATTTGTCTCCTACCCAAAGCATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031143.13
ENSMUST00000113506.2
ENSMUST00000113507.8
CDS-3UTR CAA 90 bp ACTGACTCAAGCATGCATGTATCCATGCACAGCTGTTTATACTGGTTAGTGCGGATGACCACACCTTTTTaGTTTCTCCTGAGGTTGCTG +
Preference number: 5 (lower is better)
Translates to: TDSSMHVSMHSCLYWLVRMTTPF*FLLRLL
Trigger: CAGCAACCTCAGGAGAAACAAAAAAGGTGTGGTCAT...CCGCACTAACCAGTATAAACAGCTGTGCATGGATACATGCATGCTTGAGTCAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000031143.13
ENSMUST00000113506.2
ENSMUST00000113507.8
CDS-3UTR CAA 90 bp GAGAGAGAGAGACTGACTCAAGCATGCATGTATCCATGCACAGCTGTTTATACTATGACCACACCTTTTTaGTTTCTCCTGAGGTTGCTG +
Preference number: 5 (lower is better)
Translates to: ERERLTQACMYPCTAVYTMTTPF*FLLRLL
Trigger: CAGCAACCTCAGGAGAAACAAAAAAGGTGTGGTCAT...AGTATAAACAGCTGTGCATGGATACATGCATGCTTGAGTCAGTCTCTCTCTCTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000031143.13
ENSMUST00000113506.2
ENSMUST00000113507.8
CDS CCA 72 bp ACAGAGCCAGCTCAGCCGCTGGCATCCGAGAAGCCTTaGACTCCATCTCCAGGGCTTGGAACTGTGTGGCCC +
Preference number: 6 (lower is better)
Translates to: TEPAQPLASEKP*TPSPGLGTVWP
Trigger: GGGCCACACAGTTCCAAGCCCTGGAGATGGAGTCCAAGGCTTCTCGGATGCCAGCGGCTGAGCTGGCTCTGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031143.13
CDS CAA 72 bp GACAGAGCCAGCTCAGCCGCTGGCATCCGAGAAGCCTaGGACTCCATCTCCAGGGCTTGGAACTGTGTGGCC +
Preference number: 6 (lower is better)
Translates to: DRASSAAGIREA*DSISRAWNCVA
Trigger: GGCCACACAGTTCCAAGCCCTGGAGATGGAGTCCAAGGCTTCTCGGATGCCAGCGGCTGAGCTGGCTCTGTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031143.13
CDS CAA 90 bp CTCAGCCGCTGGCATCCGAGAAGCCTTGGACTCCATCTCCAGGGCTaGGAACTGTGTGGCCCCAAGAGTTCTGAGCAGAGCACTAAGCCA +
Preference number: 6 (lower is better)
Translates to: LSRWHPRSLGLHLQG*ELCGPKSSEQSTKP
Trigger: TGGCTTAGTGCTCTGCTCAGAACTCTTGGGGCCACACAGTTCCAAGCCCTGGAGATGGAGTCCAAGGCTTCTCGGATGCCAGCGGCTGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031143.13
CDS CCA 72 bp GGCATCCGAGAAGCCTTGGACTCCATCTCCAGGGCTTaGAACTGTGTGGCCCCAAGAGTTCTGAGCAGAGCA +
Preference number: 6 (lower is better)
Translates to: GIREALDSISRA*NCVAPRVLSRA
Trigger: TGCTCTGCTCAGAACTCTTGGGGCCACACAGTTCCAAGCCCTGGAGATGGAGTCCAAGGCTTCTCGGATGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031143.13
CDS CAA 72 bp TGGCATCCGAGAAGCCTTGGACTCCATCTCCAGGGCTaGGAACTGTGTGGCCCCAAGAGTTCTGAGCAGAGC +
Preference number: 6 (lower is better)
Translates to: WHPRSLGLHLQG*ELCGPKSSEQS
Trigger: GCTCTGCTCAGAACTCTTGGGGCCACACAGTTCCAAGCCCTGGAGATGGAGTCCAAGGCTTCTCGGATGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031143.13
CDS TCA 72 bp CCACCAGCCACCAGGTTAAGTTGTGGAGCCCAAAGGTaGCAGCCATGGAGATGTAGATCATCAGCTCTGCTA +
Preference number: 6 (lower is better)
Translates to: PPATRLSCGAQR*QPWRCRSSALL
Trigger: TAGCAGAGCTGATGATCTACATCTCCATGGCTGTCACCTTTGGGCTCCACAACTTAACCTGGTGGCTGGTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031143.13
ENSMUST00000113506.2
ENSMUST00000113507.8
CDS CCA 72 bp GGCCCCAAGAGTTCTGAGCAGAGCACTAAGCCAGTTTaGAAAAGGTGCTCCCAGGAACAACGACTGAGAAAG +
Preference number: 6 (lower is better)
Translates to: GPKSSEQSTKPV*KRCSQEQRLRK
Trigger: CTTTCTCAGTCGTTGTTCCTGGGAGCACCTTTTCCAAACTGGCTTAGTGCTCTGCTCAGAACTCTTGGGGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031143.13
CDS CAA 72 bp TCTGTAGAACTTGTGGTTGAAGAATGCGGACAAGGCTaGGCTGGAGAAGACATACGTCACCACCAGCCACCA +
Preference number: 6 (lower is better)
Translates to: SVELVVEECGQG*AGEDIRHHQPP
Trigger: TGGTGGCTGGTGGTGACGTATGTCTTCTCCAGCCAAGCCTTGTCCGCATTCTTCAACCACAAGTTCTACAGA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031143.13
ENSMUST00000113506.2
ENSMUST00000113507.8
CDS TCA 72 bp GGTAGGAGACAAATGTGCTTCTGTAGAACTTGTGGTTaGAGAATGCGGACAAGGCTTGGCTGGAGAAGACAT +
Preference number: 6 (lower is better)
Translates to: GRRQMCFCRTCG*RMRTRLGWRRH
Trigger: ATGTCTTCTCCAGCCAAGCCTTGTCCGCATTCTTCAACCACAAGTTCTACAGAAGCACATTTGTCTCCTACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031143.13
ENSMUST00000113506.2
ENSMUST00000113507.8