Pregenerated sensors for SRARP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000070637Ensembl transcript IDs: ENSMUST00000094544.3
Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TGGCAGCGGTGGCAGCAACAGTGCCCAGGGCACATAGAAGGTGCTTaGTTGGCTTCTTGCCTGACTCCAGCTGAGAACTTGGCGAAGAGG | + |
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Preference number: 1 (lower is better) Translates to: WQRWQQQCPGHIEGA*LASCLTPAENLAKR Trigger: CCTCTTCGCCAAGTTCTCAGCTGGAGTCAGGCAAGAAGCCAACCAAGCACCTTCTATGTGCCCTGGGCACTGTTGCTGCCACCGCTGCCA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094544.3 |
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| 3UTR TCA 90 bp | AGGGCACATAGAAGGTGCTTGGTTGGCTTCTTGCCTGACTCCAGCTaGGAACTTGGCGAAGAGGACAGAGGCATAACTGGCTTTTCCGTT | + |
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Preference number: 1 (lower is better) Translates to: RAHRRCLVGFLPDSS*ELGEEDRGITGFSV Trigger: AACGGAAAAGCCAGTTATGCCTCTGTCCTCTTCGCCAAGTTCTCAGCTGGAGTCAGGCAAGAAGCCAACCAAGCACCTTCTATGTGCCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094544.3 |
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| 3UTR-3UTR CCA 90 bp | CTGAGAACTTGGCGAAGAGGACAGAGGCATAACTGGCTTTTCCGTTCTTCGGTGTTTAATATGTCTTCTTaGCTTCAGGCTTCAAAGACA | + |
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Preference number: 2 (lower is better) Translates to: LRTWRRGQRHNWLFRSSVFNMSS*LQASKT Trigger: TGTCTTTGAAGCCTGAAGCCAAGAAGACATATTAAA...CACCGAAGAACGGAAAAGCCAGTTATGCCTCTGTCCTCTTCGCCAAGTTCTCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094544.3 |
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| 3UTR-3UTR CCA 90 bp | ATTTATTTGATCACTTGTTCAACTCTCTCCCTTTCCAAGCTTCAAGAAAACCGTGGACAGAGGCATAACTaGCTTTTCCGTTCTTCGGTG | + |
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Preference number: 2 (lower is better) Translates to: IYLITCSTLSLSKLQENRGQRHN*LFRSSV Trigger: CACCGAAGAACGGAAAAGCCAGTTATGCCTCTGTCC...ACGGTTTTCTTGAAGCTTGGAAAGGGAGAGAGTTGAACAAGTGATCAAATAAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094544.3 |
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| 3UTR-3UTR CCA 90 bp | ATTTATTTGATCACTTGTTCAACTCTCTCCCTTTCCAAGCTTCAAGAAAACCGTCACATAGAAGGTGCTTaGTTGGCTTCTTGCCTGACT | + |
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Preference number: 2 (lower is better) Translates to: IYLITCSTLSLSKLQENRHIEGA*LASCLT Trigger: AGTCAGGCAAGAAGCCAACCAAGCACCTTCTATGTG...ACGGTTTTCTTGAAGCTTGGAAAGGGAGAGAGTTGAACAAGTGATCAAATAAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094544.3 |
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| 3UTR TCA 72 bp | AGAAGGTGCTTGGTTGGCTTCTTGCCTGACTCCAGCTaGGAACTTGGCGAAGAGGACAGAGGCATAACTGGC | + |
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Preference number: 3 (lower is better) Translates to: RRCLVGFLPDSS*ELGEEDRGITG Trigger: GCCAGTTATGCCTCTGTCCTCTTCGCCAAGTTCTCAGCTGGAGTCAGGCAAGAAGCCAACCAAGCACCTTCT 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094544.3 |
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| 3UTR-3UTR CAA 90 bp | ACTTGTTCAACTCTCTCCCTTTCCAAGCTTCAAGAAAACCGTGGTGCGGCAGTGGCACATAGAAGGTGCTaGGTTGGCTTCTTGCCTGAC | + |
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Preference number: 3 (lower is better) Translates to: TCSTLSLSKLQENRGAAVAHRRC*VGFLPD Trigger: GTCAGGCAAGAAGCCAACCAAGCACCTTCTATGTGC...CACTGCCGCACCACGGTTTTCTTGAAGCTTGGAAAGGGAGAGAGTTGAACAAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094544.3 |
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| 3UTR-3UTR CAA 90 bp | TTGATCACTTGTTCAACTCTCTCCCTTTCCAAGCTTCAAGAAAACCGTGGTGCGACTCCAGCTGAGAACTaGGCGAAGAGGACAGAGGCA | + |
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Preference number: 3 (lower is better) Translates to: LITCSTLSLSKLQENRGATPAEN*AKRTEA Trigger: TGCCTCTGTCCTCTTCGCCAAGTTCTCAGCTGGAGT...CGCACCACGGTTTTCTTGAAGCTTGGAAAGGGAGAGAGTTGAACAAGTGATCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094544.3 |
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| 3UTR CCA 72 bp | GCTTTTCCGTTCTTCGGTGCATTTAATATGTCTTCTTaGCTTCAGGCTTCAAAGACACCCGCATTCCCGGCC | + |
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Preference number: 3 (lower is better) Translates to: AFPFFGAFNMSS*LQASKTPAFPA Trigger: GGCCGGGAATGCGGGTGTCTTTGAAGCCTGAAGCCAAGAAGACATATTAAATGCACCGAAGAACGGAAAAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094544.3 |
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| 3UTR CCA 72 bp | CAGCTGAGAACTTGGCGAAGAGGACAGAGGCATAACTaGCTTTTCCGTTCTTCGGTGCATTTAATATGTCTT | + |
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Preference number: 3 (lower is better) Translates to: QLRTWRRGQRHN*LFRSSVHLICL Trigger: AAGACATATTAAATGCACCGAAGAACGGAAAAGCCAGTTATGCCTCTGTCCTCTTCGCCAAGTTCTCAGCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094544.3 |
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| CDS-3UTR CCA 90 bp | GGGCACATAGAAGGTGCTTGGTTGGCTTCTTGCCTGACTCCAGCTGAGAACTTGGGCAGGGAGCGAATGTaGAGCCCCGAGTCCTCTGTA | + |
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Preference number: 4 (lower is better) Translates to: GHIEGAWLASCLTPAENLGRERM*SPESSV Trigger: TACAGAGGACTCGGGGCTCCACATTCGCTCCCTGCC...CAAGTTCTCAGCTGGAGTCAGGCAAGAAGCCAACCAAGCACCTTCTATGTGCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094544.3 |
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| CDS-3UTR TCA 90 bp | GCTTGGTTGGCTTCTTGCCTGACTCCAGCTGAGAACTTGGCGAAGAGGACAGAGCCTTCAGTGAGTGTTTaGCCTTCTCCCGGGTTGAGT | + |
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Preference number: 4 (lower is better) Translates to: AWLASCLTPAENLAKRTEPSVSV*PSPGLS Trigger: ACTCAACCCGGGAGAAGGTCAAACACTCACTGAAGG...CTCTGTCCTCTTCGCCAAGTTCTCAGCTGGAGTCAGGCAAGAAGCCAACCAAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094544.3 |
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| CDS-3UTR CCA 90 bp | CTGAGAACTTGGCGAAGAGGACAGAGGCATAACTGGCTTTTCCGTTCTTCGGTGTTCAGGGAGCTCCCCTaGGCTTTAGGATCATTCTGG | + |
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Preference number: 4 (lower is better) Translates to: LRTWRRGQRHNWLFRSSVFRELP*ALGSFW Trigger: CCAGAATGATCCTAAAGCCCAGGGGAGCTCCCTGAA...CACCGAAGAACGGAAAAGCCAGTTATGCCTCTGTCCTCTTCGCCAAGTTCTCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094544.3 |
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| CDS-3UTR GCA 90 bp | GGACAGAGGCATAACTGGCTTTTCCGTTCTTCGGTGCATTTAATATGTCTTCTTGGTGCGCAGGACGGCTaGGTACCAGAGCTCATCTCC | + |
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Preference number: 4 (lower is better) Translates to: GQRHNWLFRSSVHLICLLGAQDG*VPELIS Trigger: GGAGATGAGCTCTGGTACGCAGCCGTCCTGCGCACC...AAGAAGACATATTAAATGCACCGAAGAACGGAAAAGCCAGTTATGCCTCTGTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094544.3 |
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| CDS-3UTR CCA 90 bp | GGACAGAGGCATAACTGGCTTTTCCGTTCTTCGGTGCATTTAATATGTCTTCTTGGGGACCAGGTAGGCTaGCAGGGAGCGAATGTGGAG | + |
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Preference number: 4 (lower is better) Translates to: GQRHNWLFRSSVHLICLLGDQVG*QGANVE Trigger: CTCCACATTCGCTCCCTGCCAGCCTACCTGGTCCCC...AAGAAGACATATTAAATGCACCGAAGAACGGAAAAGCCAGTTATGCCTCTGTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094544.3 |
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| CDS-3UTR TCA 90 bp | TATTTGATCACTTGTTCAACTCTCTCCCTTTCCAAGCTTCAAGAAAACCGTGGTTCCCTGATTGGCTCTTaGTGCGTGGGGTGGCGCCGT | + |
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Preference number: 4 (lower is better) Translates to: YLITCSTLSLSKLQENRGSLIGS*CVGWRR Trigger: ACGGCGCCACCCCACGCATCAAGAGCCAATCAGGGA...ACCACGGTTTTCTTGAAGCTTGGAAAGGGAGAGAGTTGAACAAGTGATCAAATA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094544.3 |
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| CDS-3UTR TCA 90 bp | GGACAGAGGCATAACTGGCTTTTCCGTTCTTCGGTGCATTTAATATGTCTTCTTGGTCAGAGCCTTCAGTaGGTGTTTGACCTTCTCCCG | + |
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Preference number: 4 (lower is better) Translates to: GQRHNWLFRSSVHLICLLGQSLQ*VFDLLP Trigger: CGGGAGAAGGTCAAACACTCACTGAAGGCTCTGACC...AAGAAGACATATTAAATGCACCGAAGAACGGAAAAGCCAGTTATGCCTCTGTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094544.3 |
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| CDS-3UTR GCA 90 bp | AGAGGACAGAGGCATAACTGGCTTTTCCGTTCTTCGGTGCATTTAATATGTCTTGACTTGTTTCCCAGTTaGACAGTCAATAAGGAAAGT | + |
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Preference number: 4 (lower is better) Translates to: RGQRHNWLFRSSVHLICLDLFPS*TVNKES Trigger: ACTTTCCTTATTGACTGTGCAACTGGGAAACAAGTC...AAGACATATTAAATGCACCGAAGAACGGAAAAGCCAGTTATGCCTCTGTCCTCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094544.3 |
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| CDS CCA 90 bp | GTAGCTCCAGGCTTCAGGGAGCTCCCCTGGGCTTTAGGATCATTCTaGGGACCAGGTAGGCTGGCAGGGAGCGAATGTGGAGCCCCGAGT | + |
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Preference number: 5 (lower is better) Translates to: VAPGFRELPWALGSF*GPGRLAGSECGAPS Trigger: ACTCGGGGCTCCACATTCGCTCCCTGCCAGCCTACCTGGTCCCCAGAATGATCCTAAAGCCCAGGGGAGCTCCCTGAAGCCTGGAGCTAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094544.3 |
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| CDS TCA 90 bp | AACGAAGGTCTTCATGGGTGGGGCGACACATCCCTGATTGGCTCTTaGTGCGTGGGGTGGCGCCGTGGATGCTGCCAGGGAGACTTGTTT | + |
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Preference number: 5 (lower is better) Translates to: NEGLHGWGDTSLIGS*CVGWRRGCCQGDLF Trigger: AAACAAGTCTCCCTGGCAGCATCCACGGCGCCACCCCACGCATCAAGAGCCAATCAGGGATGTGTCGCCCCACCCATGAAGACCTTCGTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094544.3 |
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| CDS GCA 90 bp | GTGGGGTGGCGCCGTGGATGCTGCCAGGGAGACTTGTTTCCCAGTTaGACAGTCAATAAGGAAAGTGACGTGAGCTGTGGGCATGGCCTT | + |
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Preference number: 5 (lower is better) Translates to: VGWRRGCCQGDLFPS*TVNKESDVSCGHGL Trigger: AAGGCCATGCCCACAGCTCACGTCACTTTCCTTATTGACTGTGCAACTGGGAAACAAGTCTCCCTGGCAGCATCCACGGCGCCACCCCAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094544.3 |
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| CDS GCA 90 bp | CAGGTCAGAGCCTTCAGTGAGTGTTTGACCTTCTCCCGGGTTGAGTaGTTTTCAGTAGCTCCAGGCTTCAGGGAGCTCCCCTGGGCTTTA | + |
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Preference number: 5 (lower is better) Translates to: QVRAFSECLTFSRVE*FSVAPGFRELPWAL Trigger: TAAAGCCCAGGGGAGCTCCCTGAAGCCTGGAGCTACTGAAAAGCACTCAACCCGGGAGAAGGTCAAACACTCACTGAAGGCTCTGACCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094544.3 |
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| CDS TCA 72 bp | CTTCATGGGTGGGGCGACACATCCCTGATTGGCTCTTaGTGCGTGGGGTGGCGCCGTGGATGCTGCCAGGGA | + |
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Preference number: 6 (lower is better) Translates to: LHGWGDTSLIGS*CVGWRRGCCQG Trigger: TCCCTGGCAGCATCCACGGCGCCACCCCACGCATCAAGAGCCAATCAGGGATGTGTCGCCCCACCCATGAAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094544.3 |
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| CDS CAA 72 bp | TCTTCATGGGTGGGGCGACACATCCCTGATTGGCTCTaGATGCGTGGGGTGGCGCCGTGGATGCTGCCAGGG | + |
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Preference number: 6 (lower is better) Translates to: SSWVGRHIPDWL*MRGVAPWMLPG Trigger: CCCTGGCAGCATCCACGGCGCCACCCCACGCATCAAGAGCCAATCAGGGATGTGTCGCCCCACCCATGAAGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094544.3 |
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| CDS GCA 72 bp | AAGGAAAGTGACGTGAGCTGTGGGCATGGCCTTGGGTaGGCAGGACGGCTGCGTACCAGAGCTCATCTCCAC | + |
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Preference number: 6 (lower is better) Translates to: KESDVSCGHGLG*AGRLRTRAHLH Trigger: GTGGAGATGAGCTCTGGTACGCAGCCGTCCTGCGCACCCAAGGCCATGCCCACAGCTCACGTCACTTTCCTT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094544.3 |
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| CDS CCA 72 bp | GGCTTCAGGGAGCTCCCCTGGGCTTTAGGATCATTCTaGGGACCAGGTAGGCTGGCAGGGAGCGAATGTGGA | + |
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Preference number: 6 (lower is better) Translates to: GFRELPWALGSF*GPGRLAGSECG Trigger: TCCACATTCGCTCCCTGCCAGCCTACCTGGTCCCCAGAATGATCCTAAAGCCCAGGGGAGCTCCCTGAAGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094544.3 |
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| CDS GCA 72 bp | GCCTTCAGTGAGTGTTTGACCTTCTCCCGGGTTGAGTaGTTTTCAGTAGCTCCAGGCTTCAGGGAGCTCCCC | + |
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Preference number: 6 (lower is better) Translates to: AFSECLTFSRVE*FSVAPGFRELP Trigger: GGGGAGCTCCCTGAAGCCTGGAGCTACTGAAAAGCACTCAACCCGGGAGAAGGTCAAACACTCACTGAAGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094544.3 |
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