Pregenerated sensors for SQLE (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022351Ensembl transcript IDs: ENSMUST00000022977.14, ENSMUST00000100640.5
Found 89 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TTACATGCTTATACACAAGCTTGGTCCTCAAGTCCACTGTGGAAGTaGCACAGTTCTATGCTATATACATCCTCTTCAAGCCCCAAGGGA | + |
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Preference number: 1 (lower is better) Translates to: LHAYTQAWSSSPLWK*HSSMLYTSSSSPKG Trigger: TCCCTTGGGGCTTGAAGAGGATGTATATAGCATAGAACTGTGTCACTTCCACAGTGGACTTGAGGACCAAGCTTGTGTATAAGCATGTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
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| CDS-3UTR CCA 90 bp | AGTTCTATGCTATATACATCCTCTTCAAGCCCCAAGGGACTTGACTGCACGTGGAAGGAGGAAGGAAGCTaGCCGGCATGGTCCGCAGAC | + |
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Preference number: 4 (lower is better) Translates to: SSMLYTSSSSPKGLDCTWKEEGS*PAWSAD Trigger: GTCTGCGGACCATGCCGGCCAGCTTCCTTCCTCCTT...CCACGTGCAGTCAAGTCCCTTGGGGCTTGAAGAGGATGTATATAGCATAGAACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022977.14 |
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| CDS-3UTR CCA 90 bp | TCCACTGTGGAAGTGACACAGTTCTATGCTATATACATCCTCTTCAAGCCCCAAGGGCGTGGAGCTCCTTaGTGTCCCCAGTCTCCTTGT | + |
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Preference number: 4 (lower is better) Translates to: STVEVTQFYAIYILFKPQGRGAP*CPQSPC Trigger: ACAAGGAGACTGGGGACACCAAGGAGCTCCACGCCC...TTGGGGCTTGAAGAGGATGTATATAGCATAGAACTGTGTCACTTCCACAGTGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
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| CDS-3UTR TCA 90 bp | AGTTCTATGCTATATACATCCTCTTCAAGCCCCAAGGGACTTGACTGCACGTGGCCCACGGCTCTGATTTaGAGCAGAAATACGTGGCGT | + |
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Preference number: 4 (lower is better) Translates to: SSMLYTSSSSPKGLDCTWPTALI*SRNTWR Trigger: ACGCCACGTATTTCTGCTTCAAATCAGAGCCGTGGG...CCACGTGCAGTCAAGTCCCTTGGGGCTTGAAGAGGATGTATATAGCATAGAACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
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| CDS-3UTR CCA 90 bp | CCTCAAGTCCACTGTGGAAGTGACACAGTTCTATGCTATATACATCCTCTTCAAAACACGGTAGCCTCCTaGCTGCAGCAGCTCCCCAAC | + |
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Preference number: 4 (lower is better) Translates to: PQVHCGSDTVLCYIHPLQNTVAS*LQQLPN Trigger: GTTGGGGAGCTGCTGCAGCCAGGAGGCTACCGTGTT...TTGAAGAGGATGTATATAGCATAGAACTGTGTCACTTCCACAGTGGACTTGAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
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| CDS-3UTR TCA 90 bp | GACACAGTTCTATGCTATATACATCCTCTTCAAGCCCCAAGGGACTTGACTGCACCCACGGCTCTGATTTaGAGCAGAAATACGTGGCGT | + |
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Preference number: 4 (lower is better) Translates to: DTVLCYIHPLQAPRDLTAPTALI*SRNTWR Trigger: ACGCCACGTATTTCTGCTTCAAATCAGAGCCGTGGG...TGCAGTCAAGTCCCTTGGGGCTTGAAGAGGATGTATATAGCATAGAACTGTGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
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| CDS-3UTR GCA 90 bp | GACACAGTTCTATGCTATATACATCCTCTTCAAGCCCCAAGGGACTTGACTGCAGGGCTCTGCCATAGCTaGTTTCCGGAGACTCATGAT | + |
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Preference number: 4 (lower is better) Translates to: DTVLCYIHPLQAPRDLTAGLCHS*FPETHD Trigger: ATCATGAGTCTCCGGAAAGCAGCTATGGCAGAGCCC...TGCAGTCAAGTCCCTTGGGGCTTGAAGAGGATGTATATAGCATAGAACTGTGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
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| CDS-3UTR GCA 90 bp | GACACAGTTCTATGCTATATACATCCTCTTCAAGCCCCAAGGGACTTGACTGCACTTTACATTGGGCTCTaGCATAGCTGCTTTCCGGAG | + |
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Preference number: 4 (lower is better) Translates to: DTVLCYIHPLQAPRDLTALYIGL*HSCFPE Trigger: CTCCGGAAAGCAGCTATGGCAGAGCCCAATGTAAAG...TGCAGTCAAGTCCCTTGGGGCTTGAAGAGGATGTATATAGCATAGAACTGTGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
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| CDS-3UTR CCA 90 bp | GTGGAAGTGACACAGTTCTATGCTATATACATCCTCTTCAAGCCCCAAGGGACTCCTTTCTTCCATCTCTaGAGAGAACTGCTGCCAAGG | + |
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Preference number: 4 (lower is better) Translates to: VEVTQFYAIYILFKPQGTPFFHL*RELLPR Trigger: CCTTGGCAGCAGTTCTCTCCAGAGATGGAAGAAAGG...AGTCCCTTGGGGCTTGAAGAGGATGTATATAGCATAGAACTGTGTCACTTCCAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
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| CDS-3UTR CCA 90 bp | GACACAGTTCTATGCTATATACATCCTCTTCAAGCCCCAAGGGACTTGACTGCACCTTTCTTCCATCTCTaGAGAGAACTGCTGCCAAGG | + |
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Preference number: 4 (lower is better) Translates to: DTVLCYIHPLQAPRDLTAPFFHL*RELLPR Trigger: CCTTGGCAGCAGTTCTCTCCAGAGATGGAAGAAAGG...TGCAGTCAAGTCCCTTGGGGCTTGAAGAGGATGTATATAGCATAGAACTGTGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
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| CDS-3UTR CCA 90 bp | GACACAGTTCTATGCTATATACATCCTCTTCAAGCCCCAAGGGACTTGACTGCACACTCTGCACTTGGTTaGTTTCTGACAGTGGGTACG | + |
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Preference number: 4 (lower is better) Translates to: DTVLCYIHPLQAPRDLTAHSALG*FLTVGT Trigger: CGTACCCACTGTCAGAAACCAACCAAGTGCAGAGTG...TGCAGTCAAGTCCCTTGGGGCTTGAAGAGGATGTATATAGCATAGAACTGTGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
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| CDS-3UTR CCA 90 bp | TCACTCTTCATTTTATTGGCTTGTCCCAATGAGTCACCCCAAATACTGAAATCAGGGCGTGGAGCTCCTTaGTGTCCCCAGTCTCCTTGT | + |
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Preference number: 4 (lower is better) Translates to: SLFILLACPNESPQILKSGRGAP*CPQSPC Trigger: ACAAGGAGACTGGGGACACCAAGGAGCTCCACGCCC...TGATTTCAGTATTTGGGGTGACTCATTGGGACAAGCCAATAAAATGAAGAGTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
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| CDS-3UTR TCA 90 bp | GACACAGTTCTATGCTATATACATCCTCTTCAAGCCCCAAGGGACTTGACTGCAGTGAGGAGACAATATTaGAAGCAACCCAACAGGACC | + |
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Preference number: 4 (lower is better) Translates to: DTVLCYIHPLQAPRDLTAVRRQY*KQPNRT Trigger: GGTCCTGTTGGGTTGCTTTCAATATTGTCTCCTCAC...TGCAGTCAAGTCCCTTGGGGCTTGAAGAGGATGTATATAGCATAGAACTGTGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
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| CDS-3UTR CCA 90 bp | GTGGAAGTGACACAGTTCTATGCTATATACATCCTCTTCAAGCCCCAAGGGACTATTCCACTCTGCACTTaGTTGGTTTCTGACAGTGGG | + |
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Preference number: 4 (lower is better) Translates to: VEVTQFYAIYILFKPQGTIPLCT*LVSDSG Trigger: CCCACTGTCAGAAACCAACCAAGTGCAGAGTGGAAT...AGTCCCTTGGGGCTTGAAGAGGATGTATATAGCATAGAACTGTGTCACTTCCAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
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| CDS-3UTR CCA 90 bp | TCCACTGTGGAAGTGACACAGTTCTATGCTATATACATCCTCTTCAAGCCCCAACTGGTAGATGAGAACTaGACTGGGGTTGACCAGAAC | + |
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Preference number: 4 (lower is better) Translates to: STVEVTQFYAIYILFKPQLVDEN*TGVDQN Trigger: GTTCTGGTCAACCCCAGTCCAGTTCTCATCTACCAG...TTGGGGCTTGAAGAGGATGTATATAGCATAGAACTGTGTCACTTCCACAGTGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
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| CDS-3UTR TCA 90 bp | TCCACTGTGGAAGTGACACAGTTCTATGCTATATACATCCTCTTCAAGCCCCAACACTTGGTTGGTTTCTaGCAGTGGGTACGGAATTTG | + |
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Preference number: 4 (lower is better) Translates to: STVEVTQFYAIYILFKPQHLVGF*QWVRNL Trigger: CAAATTCCGTACCCACTGTCAGAAACCAACCAAGTG...TTGGGGCTTGAAGAGGATGTATATAGCATAGAACTGTGTCACTTCCACAGTGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
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| CDS-3UTR TCA 90 bp | TCACTCTTCATTTTATTGGCTTGTCCCAATGAGTCACCCCAAATACTGAAATCAAGAGGCCTCCAGAAATaGCTCCTTCAGGTGCTCAGG | + |
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Preference number: 4 (lower is better) Translates to: SLFILLACPNESPQILKSRGLQK*LLQVLR Trigger: CCTGAGCACCTGAAGGAGTCATTTCTGGAGGCCTCT...TGATTTCAGTATTTGGGGTGACTCATTGGGACAAGCCAATAAAATGAAGAGTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022977.14 |
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| CDS-3UTR TCA 90 bp | GACACAGTTCTATGCTATATACATCCTCTTCAAGCCCCAAGGGACTTGACTGCAATCAACACCAGAGGGTaGGGAGACAATATTGAAAGC | + |
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Preference number: 4 (lower is better) Translates to: DTVLCYIHPLQAPRDLTAINTRG*GDNIES Trigger: GCTTTCAATATTGTCTCCTCACCCTCTGGTGTTGAT...TGCAGTCAAGTCCCTTGGGGCTTGAAGAGGATGTATATAGCATAGAACTGTGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
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| CDS-3UTR GCA 90 bp | CCTCAAGTCCACTGTGGAAGTGACACAGTTCTATGCTATATACATCCTCTTCAACTTTACATTGGGCTCTaGCATAGCTGCTTTCCGGAG | + |
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Preference number: 4 (lower is better) Translates to: PQVHCGSDTVLCYIHPLQLYIGL*HSCFPE Trigger: CTCCGGAAAGCAGCTATGGCAGAGCCCAATGTAAAG...TTGAAGAGGATGTATATAGCATAGAACTGTGTCACTTCCACAGTGGACTTGAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
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| CDS-3UTR GCA 90 bp | GACACAGTTCTATGCTATATACATCCTCTTCAAGCCCCAAGGGACTTGACTGCAGGGTTTAAACTGTGGTaGATCCTTCATAAGGAAGCC | + |
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Preference number: 4 (lower is better) Translates to: DTVLCYIHPLQAPRDLTAGFKLW*ILHKEA Trigger: GGCTTCCTTATGAAGGATGCACCACAGTTTAAACCC...TGCAGTCAAGTCCCTTGGGGCTTGAAGAGGATGTATATAGCATAGAACTGTGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
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| CDS-3UTR CCA 90 bp | AGTTCTATGCTATATACATCCTCTTCAAGCCCCAAGGGACTTGACTGCACGTGGCTTTTCTGCACTTCTTaGACTCCAGCTGTTCTTTCT | + |
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Preference number: 4 (lower is better) Translates to: SSMLYTSSSSPKGLDCTWLFCTS*TPAVLS Trigger: AGAAAGAACAGCTGGAGTCCAAGAAGTGCAGAAAAG...CCACGTGCAGTCAAGTCCCTTGGGGCTTGAAGAGGATGTATATAGCATAGAACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
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| CDS-3UTR TCA 90 bp | CCTCAAGTCCACTGTGGAAGTGACACAGTTCTATGCTATATACATCCTCTTCAAGTGAGGAGACAATATTaGAAGCAACCCAACAGGACC | + |
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Preference number: 4 (lower is better) Translates to: PQVHCGSDTVLCYIHPLQVRRQY*KQPNRT Trigger: GGTCCTGTTGGGTTGCTTTCAATATTGTCTCCTCAC...TTGAAGAGGATGTATATAGCATAGAACTGTGTCACTTCCACAGTGGACTTGAGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
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| CDS-3UTR GCA 90 bp | GACACAGTTCTATGCTATATACATCCTCTTCAAGCCCCAAGGGACTTGACTGCAAAAGCAATTCCACTCTaGACTTGGTTGGTTTCTGAC | + |
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Preference number: 4 (lower is better) Translates to: DTVLCYIHPLQAPRDLTAKAIPL*TWLVSD Trigger: GTCAGAAACCAACCAAGTGCAGAGTGGAATTGCTTT...TGCAGTCAAGTCCCTTGGGGCTTGAAGAGGATGTATATAGCATAGAACTGTGTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
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| CDS-3UTR CCA 90 bp | GACACAGTTCTATGCTATATACATCCTCTTCAAGCCCCAAGGGACTTGACTGCACTTTTCTGCACTTCTTaGACTCCAGCTGTTCTTTCT | + |
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Preference number: 4 (lower is better) Translates to: DTVLCYIHPLQAPRDLTALFCTS*TPAVLS Trigger: AGAAAGAACAGCTGGAGTCCAAGAAGTGCAGAAAAG...TGCAGTCAAGTCCCTTGGGGCTTGAAGAGGATGTATATAGCATAGAACTGTGTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
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| CDS-3UTR TCA 90 bp | GTGGAAGTGACACAGTTCTATGCTATATACATCCTCTTCAAGCCCCAAGGGACTTCTTCCTCTAGTAACTaGAGCACAACACCTTCTATA | + |
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Preference number: 4 (lower is better) Translates to: VEVTQFYAIYILFKPQGTSSSSN*STTPSI Trigger: TATAGAAGGTGTTGTGCTTCAGTTACTAGAGGAAGA...AGTCCCTTGGGGCTTGAAGAGGATGTATATAGCATAGAACTGTGTCACTTCCAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
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| CDS-3UTR GCA 90 bp | CCTCAAGTCCACTGTGGAAGTGACACAGTTCTATGCTATATACATCCTCTTCAAGACCGATTTCTTTTCTaGACTTCTTGGACTCCAGCT | + |
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Preference number: 4 (lower is better) Translates to: PQVHCGSDTVLCYIHPLQDRFLF*TSWTPA Trigger: AGCTGGAGTCCAAGAAGTGCAGAAAAGAAATCGGTC...TTGAAGAGGATGTATATAGCATAGAACTGTGTCACTTCCACAGTGGACTTGAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
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| CDS-3UTR GCA 90 bp | CCTCAAGTCCACTGTGGAAGTGACACAGTTCTATGCTATATACATCCTCTTCAAGGGTTTAAACTGTGGTaGATCCTTCATAAGGAAGCC | + |
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Preference number: 4 (lower is better) Translates to: PQVHCGSDTVLCYIHPLQGFKLW*ILHKEA Trigger: GGCTTCCTTATGAAGGATGCACCACAGTTTAAACCC...TTGAAGAGGATGTATATAGCATAGAACTGTGTCACTTCCACAGTGGACTTGAGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
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| CDS-3UTR TCA 90 bp | TCACTCTTCATTTTATTGGCTTGTCCCAATGAGTCACCCCAAATACTGAAATCACACTTGGTTGGTTTCTaGCAGTGGGTACGGAATTTG | + |
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Preference number: 4 (lower is better) Translates to: SLFILLACPNESPQILKSHLVGF*QWVRNL Trigger: CAAATTCCGTACCCACTGTCAGAAACCAACCAAGTG...TGATTTCAGTATTTGGGGTGACTCATTGGGACAAGCCAATAAAATGAAGAGTGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
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| CDS-3UTR TCA 90 bp | TCCACTGTGGAAGTGACACAGTTCTATGCTATATACATCCTCTTCAAGCCCCAATCTTCCTCTAGTAACTaGAGCACAACACCTTCTATA | + |
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Preference number: 4 (lower is better) Translates to: STVEVTQFYAIYILFKPQSSSSN*STTPSI Trigger: TATAGAAGGTGTTGTGCTTCAGTTACTAGAGGAAGA...TTGGGGCTTGAAGAGGATGTATATAGCATAGAACTGTGTCACTTCCACAGTGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
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| CDS-3UTR CCA 90 bp | CTCTTCATTTTATTGGCTTGTCCCAATGAGTCACCCCAAATACTGAAATCAAAACTGGTAGATGAGAACTaGACTGGGGTTGACCAGAAC | + |
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Preference number: 4 (lower is better) Translates to: LFILLACPNESPQILKSKLVDEN*TGVDQN Trigger: GTTCTGGTCAACCCCAGTCCAGTTCTCATCTACCAG...TTTTGATTTCAGTATTTGGGGTGACTCATTGGGACAAGCCAATAAAATGAAGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
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| CDS-3UTR TCA 90 bp | TCACTCTTCATTTTATTGGCTTGTCCCAATGAGTCACCCCAAATACTGAAATCAATCAACACCAGAGGGTaGGGAGACAATATTGAAAGC | + |
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Preference number: 4 (lower is better) Translates to: SLFILLACPNESPQILKSINTRG*GDNIES Trigger: GCTTTCAATATTGTCTCCTCACCCTCTGGTGTTGAT...TGATTTCAGTATTTGGGGTGACTCATTGGGACAAGCCAATAAAATGAAGAGTGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
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| CDS-3UTR CCA 90 bp | TCCACTGTGGAAGTGACACAGTTCTATGCTATATACATCCTCTTCAAGCCCCAATTCACAACAAAGGAATaGGTCCTTTTTCTTGACCAA | + |
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Preference number: 4 (lower is better) Translates to: STVEVTQFYAIYILFKPQFTTKE*VLFLDQ Trigger: TTGGTCAAGAAAAAGGACCCATTCCTTTGTTGTGAA...TTGGGGCTTGAAGAGGATGTATATAGCATAGAACTGTGTCACTTCCACAGTGGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
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| CDS-3UTR GCA 90 bp | CTCTTCATTTTATTGGCTTGTCCCAATGAGTCACCCCAAATACTGAAATCAAAAGACCGATTTCTTTTCTaGACTTCTTGGACTCCAGCT | + |
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Preference number: 4 (lower is better) Translates to: LFILLACPNESPQILKSKDRFLF*TSWTPA Trigger: AGCTGGAGTCCAAGAAGTGCAGAAAAGAAATCGGTC...TTTTGATTTCAGTATTTGGGGTGACTCATTGGGACAAGCCAATAAAATGAAGAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
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| CDS-3UTR GCA 90 bp | TCACTCTTCATTTTATTGGCTTGTCCCAATGAGTCACCCCAAATACTGAAATCAAAAGCAATTCCACTCTaGACTTGGTTGGTTTCTGAC | + |
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Preference number: 4 (lower is better) Translates to: SLFILLACPNESPQILKSKAIPL*TWLVSD Trigger: GTCAGAAACCAACCAAGTGCAGAGTGGAATTGCTTT...TGATTTCAGTATTTGGGGTGACTCATTGGGACAAGCCAATAAAATGAAGAGTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
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| CDS-3UTR CCA 90 bp | TCACTCTTCATTTTATTGGCTTGTCCCAATGAGTCACCCCAAATACTGAAATCATTCACAACAAAGGAATaGGTCCTTTTTCTTGACCAA | + |
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Preference number: 4 (lower is better) Translates to: SLFILLACPNESPQILKSFTTKE*VLFLDQ Trigger: TTGGTCAAGAAAAAGGACCCATTCCTTTGTTGTGAA...TGATTTCAGTATTTGGGGTGACTCATTGGGACAAGCCAATAAAATGAAGAGTGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
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| CDS CCA 90 bp | CTGAACTTGGAGAAGAGTCCATCCGCAACAACGGTGAGCGGGGCGTaGAGCTCCTTGGTGTCCCCAGTCTCCTTGTCCTTGTATTGCACG | + |
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Preference number: 5 (lower is better) Translates to: LNLEKSPSATTVSGA*SSLVSPVSLSLYCT Trigger: CGTGCAATACAAGGACAAGGAGACTGGGGACACCAAGGAGCTCCACGCCCCGCTCACCGTTGTTGCGGATGGACTCTTCTCCAAGTTCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
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| CDS CCA 90 bp | CGCCTCGTTTGTTCACTGAGGAAGGAGGAAGGAAGCTGGCCGGCATaGTCCGCAGACGACCATTCTGAGAGGCCTCCAGAAATGACTCCT | + |
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Preference number: 5 (lower is better) Translates to: RLVCSLRKEEGSWPA*SADDHSERPPEMTP Trigger: AGGAGTCATTTCTGGAGGCCTCTCAGAATGGTCGTCTGCGGACCATGCCGGCCAGCTTCCTTCCTCCTTCCTCAGTGAACAAACGAGGCG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022977.14 |
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| CDS TCA 90 bp | GAAGGAGGAAGGAAGCTGGCCGGCATGGTCCGCAGACGACCATTCTaGGAGGCCTCCAGAAATGACTCCTTCAGGTGCTCAGGTAACTGT | + |
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Preference number: 5 (lower is better) Translates to: EGGRKLAGMVRRRPF*EASRNDSFRCSGNC Trigger: ACAGTTACCTGAGCACCTGAAGGAGTCATTTCTGGAGGCCTCTCAGAATGGTCGTCTGCGGACCATGCCGGCCAGCTTCCTTCCTCCTTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022977.14 |
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| CDS-3UTR CAA 90 bp | AGTTCTATGCTATATACATCCTCTTCAAGCCCCAAGGGACTTGACTGCACGTGGGGGGCGTGGAGCTCCTaGGTGTCCCCAGTCTCCTTG | + |
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Preference number: 5 (lower is better) Translates to: SSMLYTSSSSPKGLDCTWGAWSS*VSPVSL Trigger: CAAGGAGACTGGGGACACCAAGGAGCTCCACGCCCC...CCACGTGCAGTCAAGTCCCTTGGGGCTTGAAGAGGATGTATATAGCATAGAACT 56% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
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| CDS-3UTR CAA 90 bp | GACACAGTTCTATGCTATATACATCCTCTTCAAGCCCCAAGGGACTTGACTGCAGGGGCGTGGAGCTCCTaGGTGTCCCCAGTCTCCTTG | + |
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Preference number: 5 (lower is better) Translates to: DTVLCYIHPLQAPRDLTAGAWSS*VSPVSL Trigger: CAAGGAGACTGGGGACACCAAGGAGCTCCACGCCCC...TGCAGTCAAGTCCCTTGGGGCTTGAAGAGGATGTATATAGCATAGAACTGTGTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
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| CDS-3UTR CAA 90 bp | CCTCAAGTCCACTGTGGAAGTGACACAGTTCTATGCTATATACATCCTCTTCAAAGCAGGAGCTCCTTGTaGGCCAGGGTGACATCCCCG | + |
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Preference number: 5 (lower is better) Translates to: PQVHCGSDTVLCYIHPLQSRSSL*ARVTSP Trigger: CGGGGATGTCACCCTGGCCAACAAGGAGCTCCTGCT...TTGAAGAGGATGTATATAGCATAGAACTGTGTCACTTCCACAGTGGACTTGAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
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| CDS-3UTR CAA 90 bp | AGTTCTATGCTATATACATCCTCTTCAAGCCCCAAGGGACTTGACTGCACGTGGCCACTCTGCACTTGGTaGGTTTCTGACAGTGGGTAC | + |
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Preference number: 5 (lower is better) Translates to: SSMLYTSSSSPKGLDCTWPLCTW*VSDSGY Trigger: GTACCCACTGTCAGAAACCAACCAAGTGCAGAGTGG...CCACGTGCAGTCAAGTCCCTTGGGGCTTGAAGAGGATGTATATAGCATAGAACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
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| CDS-3UTR CAA 90 bp | AGTTCTATGCTATATACATCCTCTTCAAGCCCCAAGGGACTTGACTGCACGTGGAGGCTCTTCCTGAACTaGGAGAAGAGTCCATCCGCA | + |
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Preference number: 5 (lower is better) Translates to: SSMLYTSSSSPKGLDCTWRLFLN*EKSPSA Trigger: TGCGGATGGACTCTTCTCCAAGTTCAGGAAGAGCCT...CCACGTGCAGTCAAGTCCCTTGGGGCTTGAAGAGGATGTATATAGCATAGAACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
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| CDS-3UTR CAA 90 bp | TCACTCTTCATTTTATTGGCTTGTCCCAATGAGTCACCCCAAATACTGAAATCAAGCAGGAGCTCCTTGTaGGCCAGGGTGACATCCCCG | + |
|
Preference number: 5 (lower is better) Translates to: SLFILLACPNESPQILKSSRSSL*ARVTSP Trigger: CGGGGATGTCACCCTGGCCAACAAGGAGCTCCTGCT...TGATTTCAGTATTTGGGGTGACTCATTGGGACAAGCCAATAAAATGAAGAGTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
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| CDS-3UTR CAA 90 bp | GTGGAAGTGACACAGTTCTATGCTATATACATCCTCTTCAAGCCCCAAGGGACTCCACTCTGCACTTGGTaGGTTTCTGACAGTGGGTAC | + |
|
Preference number: 5 (lower is better) Translates to: VEVTQFYAIYILFKPQGTPLCTW*VSDSGY Trigger: GTACCCACTGTCAGAAACCAACCAAGTGCAGAGTGG...AGTCCCTTGGGGCTTGAAGAGGATGTATATAGCATAGAACTGTGTCACTTCCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
||
| CDS-3UTR CAA 90 bp | TCCACTGTGGAAGTGACACAGTTCTATGCTATATACATCCTCTTCAAGCCCCAAGCCCACGGCTCTGATTaGAAGCAGAAATACGTGGCG | + |
|
Preference number: 5 (lower is better) Translates to: STVEVTQFYAIYILFKPQAHGSD*KQKYVA Trigger: CGCCACGTATTTCTGCTTCAAATCAGAGCCGTGGGC...TTGGGGCTTGAAGAGGATGTATATAGCATAGAACTGTGTCACTTCCACAGTGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
||
| CDS-3UTR CAA 90 bp | CCTCAAGTCCACTGTGGAAGTGACACAGTTCTATGCTATATACATCCTCTTCAAAGAACTGGACTGGGGTaGACCAGAACAAGCTCCGCA | + |
|
Preference number: 5 (lower is better) Translates to: PQVHCGSDTVLCYIHPLQRTGLG*TRTSSA Trigger: TGCGGAGCTTGTTCTGGTCAACCCCAGTCCAGTTCT...TTGAAGAGGATGTATATAGCATAGAACTGTGTCACTTCCACAGTGGACTTGAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
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| CDS-3UTR CAA 90 bp | AGTTCTATGCTATATACATCCTCTTCAAGCCCCAAGGGACTTGACTGCACGTGGTCTTTTCTGCACTTCTaGGACTCCAGCTGTTCTTTC | + |
|
Preference number: 5 (lower is better) Translates to: SSMLYTSSSSPKGLDCTWSFLHF*DSSCSF Trigger: GAAAGAACAGCTGGAGTCCAAGAAGTGCAGAAAAGA...CCACGTGCAGTCAAGTCCCTTGGGGCTTGAAGAGGATGTATATAGCATAGAACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
||
| CDS-3UTR CAA 90 bp | CCTCAAGTCCACTGTGGAAGTGACACAGTTCTATGCTATATACATCCTCTTCAAAGGCTCTTCCTGAACTaGGAGAAGAGTCCATCCGCA | + |
|
Preference number: 5 (lower is better) Translates to: PQVHCGSDTVLCYIHPLQRLFLN*EKSPSA Trigger: TGCGGATGGACTCTTCTCCAAGTTCAGGAAGAGCCT...TTGAAGAGGATGTATATAGCATAGAACTGTGTCACTTCCACAGTGGACTTGAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
||
| CDS-3UTR CAA 90 bp | GACACAGTTCTATGCTATATACATCCTCTTCAAGCCCCAAGGGACTTGACTGCAGGTGAGGAGACAATATaGAAAGCAACCCAACAGGAC | + |
|
Preference number: 5 (lower is better) Translates to: DTVLCYIHPLQAPRDLTAGEETI*KATQQD Trigger: GTCCTGTTGGGTTGCTTTCAATATTGTCTCCTCACC...TGCAGTCAAGTCCCTTGGGGCTTGAAGAGGATGTATATAGCATAGAACTGTGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
||
| CDS-3UTR CAA 90 bp | GACACAGTTCTATGCTATATACATCCTCTTCAAGCCCCAAGGGACTTGACTGCAAGGATAGAACACGCTTaGTACAGTACAGCACCGCTA | + |
|
Preference number: 5 (lower is better) Translates to: DTVLCYIHPLQAPRDLTARIEHA*YSTAPL Trigger: TAGCGGTGCTGTACTGTACAAAGCGTGTTCTATCCT...TGCAGTCAAGTCCCTTGGGGCTTGAAGAGGATGTATATAGCATAGAACTGTGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
||
| CDS TCA 90 bp | TGCTTTCATAGTCATGAACTATGTAGCCATGTATATGATGGGCATTaGGACCTTCTACTGTATCTCCAAGGCCCAGCTCCTGGAGAACAC | + |
|
Preference number: 5 (lower is better) Translates to: CFHSHELCSHVYDGH*DLLLYLQGPAPGEH Trigger: GTGTTCTCCAGGAGCTGGGCCTTGGAGATACAGTAGAAGGTCTCAATGCCCATCATATACATGGCTACATAGTTCATGACTATGAAAGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
||
| CDS-3UTR CAA 90 bp | GACACAGTTCTATGCTATATACATCCTCTTCAAGCCCCAAGGGACTTGACTGCACAGTGGGTACGGAATTaGAACTTCAGATCTGCTTTC | + |
|
Preference number: 5 (lower is better) Translates to: DTVLCYIHPLQAPRDLTAQWVRN*NFRSAF Trigger: GAAAGCAGATCTGAAGTTCAAATTCCGTACCCACTG...TGCAGTCAAGTCCCTTGGGGCTTGAAGAGGATGTATATAGCATAGAACTGTGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
||
| CDS-3UTR CAA 90 bp | CCTCAAGTCCACTGTGGAAGTGACACAGTTCTATGCTATATACATCCTCTTCAACTCCTTGTCCTTGTATaGCACGCCGATTACAGCATC | + |
|
Preference number: 5 (lower is better) Translates to: PQVHCGSDTVLCYIHPLQLLVLV*HADYSI Trigger: GATGCTGTAATCGGCGTGCAATACAAGGACAAGGAG...TTGAAGAGGATGTATATAGCATAGAACTGTGTCACTTCCACAGTGGACTTGAGG 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
||
| CDS-3UTR CAA 90 bp | TCACTCTTCATTTTATTGGCTTGTCCCAATGAGTCACCCCAAATACTGAAATCAAGAACTGGACTGGGGTaGACCAGAACAAGCTCCGCA | + |
|
Preference number: 5 (lower is better) Translates to: SLFILLACPNESPQILKSRTGLG*TRTSSA Trigger: TGCGGAGCTTGTTCTGGTCAACCCCAGTCCAGTTCT...TGATTTCAGTATTTGGGGTGACTCATTGGGACAAGCCAATAAAATGAAGAGTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
||
| CDS-3UTR CAA 90 bp | TCCACTGTGGAAGTGACACAGTTCTATGCTATATACATCCTCTTCAAGCCCCAAGGTGAGGAGACAATATaGAAAGCAACCCAACAGGAC | + |
|
Preference number: 5 (lower is better) Translates to: STVEVTQFYAIYILFKPQGEETI*KATQQD Trigger: GTCCTGTTGGGTTGCTTTCAATATTGTCTCCTCACC...TTGGGGCTTGAAGAGGATGTATATAGCATAGAACTGTGTCACTTCCACAGTGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
||
| CDS-3UTR CAA 90 bp | TCACTCTTCATTTTATTGGCTTGTCCCAATGAGTCACCCCAAATACTGAAATCAGCCCACGGCTCTGATTaGAAGCAGAAATACGTGGCG | + |
|
Preference number: 5 (lower is better) Translates to: SLFILLACPNESPQILKSAHGSD*KQKYVA Trigger: CGCCACGTATTTCTGCTTCAAATCAGAGCCGTGGGC...TGATTTCAGTATTTGGGGTGACTCATTGGGACAAGCCAATAAAATGAAGAGTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
||
| CDS GCA 90 bp | AAGCACAACACCTTCTATAAACTTTACATTGGGCTCTGCCATAGCTaGTTTCCGGAGACTCATGATGAATCGGCCATGGTGAAAAGCAAT | + |
|
Preference number: 5 (lower is better) Translates to: KHNTFYKLYIGLCHS*FPETHDESAMVKSN Trigger: ATTGCTTTTCACCATGGCCGATTCATCATGAGTCTCCGGAAAGCAGCTATGGCAGAGCCCAATGTAAAGTTTATAGAAGGTGTTGTGCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
||
| CDS GCA 90 bp | TTTATATCTTTTAAAGCAACTGTCATTCCTCCACCAGTAAGAGGGTaGCTCAGGTTATACGCATCTCCCAGAATAAGGACGCCTCGTTTG | + |
|
Preference number: 5 (lower is better) Translates to: FISFKATVIPPPVRG*LRLYASPRIRTPRL Trigger: CAAACGAGGCGTCCTTATTCTGGGAGATGCGTATAACCTGAGGCACCCTCTTACTGGTGGAGGAATGACAGTTGCTTTAAAAGATATAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022977.14 |
||
| CDS GCA 90 bp | TTTATATCTTTTAAAGCAACTGTCATTCCTCCACCAGTAAGAGGGTaGCTCAGGTTATACGCATCTCCCAGAATAAGGACGCCAGGTAAC | + |
|
Preference number: 5 (lower is better) Translates to: FISFKATVIPPPVRG*LRLYASPRIRTPGN Trigger: GTTACCTGGCGTCCTTATTCTGGGAGATGCGTATAACCTGAGGCACCCTCTTACTGGTGGAGGAATGACAGTTGCTTTAAAAGATATAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100640.5 |
||
| CDS-3UTR CAA 90 bp | GTGGAAGTGACACAGTTCTATGCTATATACATCCTCTTCAAGCCCCAAGGGACTTCTATAAACTTTACATaGGGCTCTGCCATAGCTGCT | + |
|
Preference number: 5 (lower is better) Translates to: VEVTQFYAIYILFKPQGTSINFT*GSAIAA Trigger: AGCAGCTATGGCAGAGCCCAATGTAAAGTTTATAGA...AGTCCCTTGGGGCTTGAAGAGGATGTATATAGCATAGAACTGTGTCACTTCCAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
||
| CDS CCA 90 bp | CTGTTAATGTCGTTTCTGAAAGACCGATTTCTTTTCTGCACTTCTTaGACTCCAGCTGTTCTTTCTTTTCTGATTCAGGTGACTTGGCCC | + |
|
Preference number: 5 (lower is better) Translates to: LLMSFLKDRFLFCTS*TPAVLSFLIQVTWP Trigger: GGGCCAAGTCACCTGAATCAGAAAAGAAAGAACAGCTGGAGTCCAAGAAGTGCAGAAAAGAAATCGGTCTTTCAGAAACGACATTAACAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
||
| CDS CCA 90 bp | AACAAGTACCCTAGTTTCACTGGAAGAAATCTGGTAGATGAGAACTaGACTGGGGTTGACCAGAACAAGCTCCGCAAAATTGGGTTTAAA | + |
|
Preference number: 5 (lower is better) Translates to: NKYPSFTGRNLVDEN*TGVDQNKLRKIGFK Trigger: TTTAAACCCAATTTTGCGGAGCTTGTTCTGGTCAACCCCAGTCCAGTTCTCATCTACCAGATTTCTTCCAGTGAAACTAGGGTACTTGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
||
| CDS-3UTR CAA 90 bp | GTGGAAGTGACACAGTTCTATGCTATATACATCCTCTTCAAGCCCCAAGGGACTATTCTCTTAGGTTTCTaGGCAATTCTCCCCGAATAT | + |
|
Preference number: 5 (lower is better) Translates to: VEVTQFYAIYILFKPQGTILLGF*AILPEY Trigger: ATATTCGGGGAGAATTGCCAAGAAACCTAAGAGAAT...AGTCCCTTGGGGCTTGAAGAGGATGTATATAGCATAGAACTGTGTCACTTCCAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
||
| CDS-3UTR CAA 90 bp | GACACAGTTCTATGCTATATACATCCTCTTCAAGCCCCAAGGGACTTGACTGCAATTCTCTTAGGTTTCTaGGCAATTCTCCCCGAATAT | + |
|
Preference number: 5 (lower is better) Translates to: DTVLCYIHPLQAPRDLTAILLGF*AILPEY Trigger: ATATTCGGGGAGAATTGCCAAGAAACCTAAGAGAAT...TGCAGTCAAGTCCCTTGGGGCTTGAAGAGGATGTATATAGCATAGAACTGTGTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
||
| CDS TCA 90 bp | TCCTTGTATTGCACGCCGATTACAGCATCATCTTCCTCTAGTAACTaGAGCACAACACCTTCTATAAACTTTACATTGGGCTCTGCCATA | + |
|
Preference number: 5 (lower is better) Translates to: SLYCTPITASSSSSN*STTPSINFTLGSAI Trigger: TATGGCAGAGCCCAATGTAAAGTTTATAGAAGGTGTTGTGCTTCAGTTACTAGAGGAAGATGATGCTGTAATCGGCGTGCAATACAAGGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
||
| CDS-3UTR CAA 90 bp | TCACTCTTCATTTTATTGGCTTGTCCCAATGAGTCACCCCAAATACTGAAATCATCTGATTCAGGTGACTaGGCCCAGAAGAAGCCAATA | + |
|
Preference number: 5 (lower is better) Translates to: SLFILLACPNESPQILKSSDSGD*AQKKPI Trigger: TATTGGCTTCTTCTGGGCCAAGTCACCTGAATCAGA...TGATTTCAGTATTTGGGGTGACTCATTGGGACAAGCCAATAAAATGAAGAGTGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
||
| CDS-3UTR CAA 90 bp | CTCTTCATTTTATTGGCTTGTCCCAATGAGTCACCCCAAATACTGAAATCAAAACTCCTTGTCCTTGTATaGCACGCCGATTACAGCATC | + |
|
Preference number: 5 (lower is better) Translates to: LFILLACPNESPQILKSKLLVLV*HADYSI Trigger: GATGCTGTAATCGGCGTGCAATACAAGGACAAGGAG...TTTTGATTTCAGTATTTGGGGTGACTCATTGGGACAAGCCAATAAAATGAAGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
||
| CDS-3UTR CAA 90 bp | CTCTTCATTTTATTGGCTTGTCCCAATGAGTCACCCCAAATACTGAAATCAAAATCTGATTCAGGTGACTaGGCCCAGAAGAAGCCAATA | + |
|
Preference number: 5 (lower is better) Translates to: LFILLACPNESPQILKSKSDSGD*AQKKPI Trigger: TATTGGCTTCTTCTGGGCCAAGTCACCTGAATCAGA...TTTTGATTTCAGTATTTGGGGTGACTCATTGGGACAAGCCAATAAAATGAAGAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
||
| CDS-3UTR CAA 90 bp | CTCTTCATTTTATTGGCTTGTCCCAATGAGTCACCCCAAATACTGAAATCAAAACAGTGGGTACGGAATTaGAACTTCAGATCTGCTTTC | + |
|
Preference number: 5 (lower is better) Translates to: LFILLACPNESPQILKSKQWVRN*NFRSAF Trigger: GAAAGCAGATCTGAAGTTCAAATTCCGTACCCACTG...TTTTGATTTCAGTATTTGGGGTGACTCATTGGGACAAGCCAATAAAATGAAGAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
||
| CDS-3UTR CAA 90 bp | CTCTTCATTTTATTGGCTTGTCCCAATGAGTCACCCCAAATACTGAAATCAAAAAATACGTGGCGTAGATaGCAACGGAAAAGAAGTGTC | + |
|
Preference number: 5 (lower is better) Translates to: LFILLACPNESPQILKSKNTWRR*QRKRSV Trigger: GACACTTCTTTTCCGTTGCAATCTACGCCACGTATT...TTTTGATTTCAGTATTTGGGGTGACTCATTGGGACAAGCCAATAAAATGAAGAG 40% GC, longest homopolymer 6 nt, total homopolymer stretches 18 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
||
| CDS TCA 72 bp | AGAATATCCGAGAAGGCAGCGAACTGGGCGCCGCTCTaGTGGCGGCCAAGGAGGCCCCCGTGTCGATGGCGA | + |
|
Preference number: 6 (lower is better) Translates to: RISEKAANWAPL*WRPRRPPCRWR Trigger: TCGCCATCGACACGGGGGCCTCCTTGGCCGCCATCAGAGCGGCGCCCAGTTCGCTGCCTTCTCGGATATTCT 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
||
| CDS CCA 72 bp | TCCAAGGCCCAGCTCCTGGAGAACACGGTAGCCTCCTaGCTGCAGCAGCTCCCCAACTATCCTGTCGGGCTC | + |
|
Preference number: 6 (lower is better) Translates to: SKAQLLENTVAS*LQQLPNYPVGL Trigger: GAGCCCGACAGGATAGTTGGGGAGCTGCTGCAGCCAGGAGGCTACCGTGTTCTCCAGGAGCTGGGCCTTGGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
||
| CDS TCA 72 bp | AGGAAGCTGGCCGGCATGGTCCGCAGACGACCATTCTaGGAGGCCTCCAGAAATGACTCCTTCAGGTGCTCA | + |
|
Preference number: 6 (lower is better) Translates to: RKLAGMVRRRPF*EASRNDSFRCS Trigger: TGAGCACCTGAAGGAGTCATTTCTGGAGGCCTCTCAGAATGGTCGTCTGCGGACCATGCCGGCCAGCTTCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022977.14 |
||
| CDS CAA 72 bp | AGCGGGGCGTGGAGCTCCTTGGTGTCCCCAGTCTCCTaGTCCTTGTATTGCACGCCGATTACAGCATCATCT | + |
|
Preference number: 6 (lower is better) Translates to: SGAWSSLVSPVS*SLYCTPITASS Trigger: AGATGATGCTGTAATCGGCGTGCAATACAAGGACAAGGAGACTGGGGACACCAAGGAGCTCCACGCCCCGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
||
| CDS CAA 90 bp | ACAACGGTGAGCGGGGCGTGGAGCTCCTTGGTGTCCCCAGTCTCCTaGTCCTTGTATTGCACGCCGATTACAGCATCATCTTCCTCTAGT | + |
|
Preference number: 6 (lower is better) Translates to: TTVSGAWSSLVSPVS*SLYCTPITASSSSS Trigger: ACTAGAGGAAGATGATGCTGTAATCGGCGTGCAATACAAGGACAAGGAGACTGGGGACACCAAGGAGCTCCACGCCCCGCTCACCGTTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
||
| CDS CAA 72 bp | GCGTGGAGCTCCTTGGTGTCCCCAGTCTCCTTGTCCTaGTATTGCACGCCGATTACAGCATCATCTTCCTCT | + |
|
Preference number: 6 (lower is better) Translates to: AWSSLVSPVSLS*YCTPITASSSS Trigger: AGAGGAAGATGATGCTGTAATCGGCGTGCAATACAAGGACAAGGAGACTGGGGACACCAAGGAGCTCCACGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
||
| CDS TCA 72 bp | GTGTCGAATCAACACCAGAGGGTGAGGAGACAATATTaGAAGCAACCCAACAGGACCGGTCACACACTCTCC | + |
|
Preference number: 6 (lower is better) Translates to: VSNQHQRVRRQY*KQPNRTGHTLS Trigger: GGAGAGTGTGTGACCGGTCCTGTTGGGTTGCTTTCAATATTGTCTCCTCACCCTCTGGTGTTGATTCGACAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
||
| CDS TCA 72 bp | ACTGAAAAGGGCCCGTGGTTTTGTAGCCCACGGCTCTaGTTTGAAGCAGAAATACGTGGCGTAGATTGCAAC | + |
|
Preference number: 6 (lower is better) Translates to: TEKGPWFCSPRL*FEAEIRGVDCN Trigger: GTTGCAATCTACGCCACGTATTTCTGCTTCAAATCAGAGCCGTGGGCTACAAAACCACGGGCCCTTTTCAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
||
| CDS GCA 72 bp | AGCTCCTTGGTGTCCCCAGTCTCCTTGTCCTTGTATTaGACGCCGATTACAGCATCATCTTCCTCTAGTAAC | + |
|
Preference number: 6 (lower is better) Translates to: SSLVSPVSLSLY*TPITASSSSSN Trigger: GTTACTAGAGGAAGATGATGCTGTAATCGGCGTGCAATACAAGGACAAGGAGACTGGGGACACCAAGGAGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
||
| CDS CAA 72 bp | AGTGTCGAATCAACACCAGAGGGTGAGGAGACAATATaGAAAGCAACCCAACAGGACCGGTCACACACTCTC | + |
|
Preference number: 6 (lower is better) Translates to: SVESTPEGEETI*KATQQDRSHTL Trigger: GAGAGTGTGTGACCGGTCCTGTTGGGTTGCTTTCAATATTGTCTCCTCACCCTCTGGTGTTGATTCGACACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
||
| CDS TCA 72 bp | GCAACGGAAAAGAAGTGTCGAATCAACACCAGAGGGTaGGGAGACAATATTGAAAGCAACCCAACAGGACCG | + |
|
Preference number: 6 (lower is better) Translates to: ATEKKCRINTRG*GDNIESNPTGP Trigger: CGGTCCTGTTGGGTTGCTTTCAATATTGTCTCCTCACCCTCTGGTGTTGATTCGACACTTCTTTTCCGTTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
||
| CDS CCA 72 bp | AACTGTGGTGCATCCTTCATAAGGAAGCCAACGAAGTaGGAAGAAACGGAGACTTTACTGGAGATGAGGCTC | + |
|
Preference number: 6 (lower is better) Translates to: NCGASFIRKPTK*EETETLLEMRL Trigger: GAGCCTCATCTCCAGTAAAGTCTCCGTTTCTTCCCACTTCGTTGGCTTCCTTATGAAGGATGCACCACAGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
||
| CDS GCA 72 bp | ACCTTCTATAAACTTTACATTGGGCTCTGCCATAGCTaGTTTCCGGAGACTCATGATGAATCGGCCATGGTG | + |
|
Preference number: 6 (lower is better) Translates to: TFYKLYIGLCHS*FPETHDESAMV Trigger: CACCATGGCCGATTCATCATGAGTCTCCGGAAAGCAGCTATGGCAGAGCCCAATGTAAAGTTTATAGAAGGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
||
| CDS GCA 72 bp | TTTAAAGCAACTGTCATTCCTCCACCAGTAAGAGGGTaGCTCAGGTTATACGCATCTCCCAGAATAAGGACG | + |
|
Preference number: 6 (lower is better) Translates to: FKATVIPPPVRG*LRLYASPRIRT Trigger: CGTCCTTATTCTGGGAGATGCGTATAACCTGAGGCACCCTCTTACTGGTGGAGGAATGACAGTTGCTTTAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
||
| CDS TCA 72 bp | AGTCATGAACTATGTAGCCATGTATATGATGGGCATTaGGACCTTCTACTGTATCTCCAAGGCCCAGCTCCT | + |
|
Preference number: 6 (lower is better) Translates to: SHELCSHVYDGH*DLLLYLQGPAP Trigger: AGGAGCTGGGCCTTGGAGATACAGTAGAAGGTCTCAATGCCCATCATATACATGGCTACATAGTTCATGACT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
||
| CDS CCA 72 bp | CCTAGTTTCACTGGAAGAAATCTGGTAGATGAGAACTaGACTGGGGTTGACCAGAACAAGCTCCGCAAAATT | + |
|
Preference number: 6 (lower is better) Translates to: PSFTGRNLVDEN*TGVDQNKLRKI Trigger: AATTTTGCGGAGCTTGTTCTGGTCAACCCCAGTCCAGTTCTCATCTACCAGATTTCTTCCAGTGAAACTAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
||
| CDS GCA 72 bp | AAGCACAACACCTTCTATAAACTTTACATTGGGCTCTaGCATAGCTGCTTTCCGGAGACTCATGATGAATCG | + |
|
Preference number: 6 (lower is better) Translates to: KHNTFYKLYIGL*HSCFPETHDES Trigger: CGATTCATCATGAGTCTCCGGAAAGCAGCTATGGCAGAGCCCAATGTAAAGTTTATAGAAGGTGTTGTGCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
||
| CDS TCA 72 bp | TGCACGCCGATTACAGCATCATCTTCCTCTAGTAACTaGAGCACAACACCTTCTATAAACTTTACATTGGGC | + |
|
Preference number: 6 (lower is better) Translates to: CTPITASSSSSN*STTPSINFTLG Trigger: GCCCAATGTAAAGTTTATAGAAGGTGTTGTGCTTCAGTTACTAGAGGAAGATGATGCTGTAATCGGCGTGCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022977.14 ENSMUST00000100640.5 |
||