RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SPZ1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000046957

Ensembl transcript IDs: ENSMUST00000050658.6

Found 63 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR CCA 90 bp GTTAACGGTCATACAATGGTTGTTAAGGCCCAAACTTCTCTAACTACTGAGATAAGGCCTCCTCCTTGGTaGAATCAGAAGCTCTCTACC +
Preference number: 2 (lower is better)
Translates to: VNGHTMVVKAQTSLTTEIRPPPW*NQKLST
Trigger: GGTAGAGAGCTTCTGATTCCACCAAGGAGGAGGCCT...TATCTCAGTAGTTAGAGAAGTTTGGGCCTTAACAACCATTGTATGACCGTTAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
3UTR-3UTR CAA 90 bp GTTAACGGTCATACAATGGTTGTTAAGGCCCAAACTTCTCTAACTACTGAGATACAGTTTTGTCTCAAGTaGTATCTGCTTCTGGCGACT +
Preference number: 3 (lower is better)
Translates to: VNGHTMVVKAQTSLTTEIQFCLK*YLLLAT
Trigger: AGTCGCCAGAAGCAGATACAACTTGAGACAAAACTG...TATCTCAGTAGTTAGAGAAGTTTGGGCCTTAACAACCATTGTATGACCGTTAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
3UTR-3UTR CAA 90 bp GTTAACGGTCATACAATGGTTGTTAAGGCCCAAACTTCTCTAACTACTGAGATAGGGTTGATGACAGTTTaGTCTCAAGTTGTATCTGCT +
Preference number: 3 (lower is better)
Translates to: VNGHTMVVKAQTSLTTEIGLMTV*SQVVSA
Trigger: AGCAGATACAACTTGAGACAAAACTGTCATCAACCC...TATCTCAGTAGTTAGAGAAGTTTGGGCCTTAACAACCATTGTATGACCGTTAAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
CDS-3UTR CCA 90 bp TCTCTACCCTGGGTTGATGACAGTTTTGTCTCAAGTTGTATCTGCTTCTGGCGACCTCCAGCTTCTGCTTaGTGGATAGCCCATTGTTGG +
Preference number: 4 (lower is better)
Translates to: SLPWVDDSFVSSCICFWRPPASA*WIAHCW
Trigger: CCAACAATGGGCTATCCACCAAGCAGAAGCTGGAGG...TCGCCAGAAGCAGATACAACTTGAGACAAAACTGTCATCAACCCAGGGTAGAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
CDS-3UTR CCA 90 bp TATTCAAATTTTCACTTGGTTAACGGTCATACAATGGTTGTTAAGGCCCAAACTAGCAGGGTTAGGAGATaGACACCGGGCGGGCATCTC +
Preference number: 4 (lower is better)
Translates to: YSNFHLVNGHTMVVKAQTSRVRR*TPGGHL
Trigger: GAGATGCCCGCCCGGTGTCCATCTCCTAACCCTGCT...AGTTTGGGCCTTAACAACCATTGTATGACCGTTAACCAAGTGAAAATTTGAATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
CDS-3UTR CCA 90 bp GTTAACGGTCATACAATGGTTGTTAAGGCCCAAACTTCTCTAACTACTGAGATAAGCGCGTGGGTGTCATaGCTTAGCTTCTTCACCTGC +
Preference number: 4 (lower is better)
Translates to: VNGHTMVVKAQTSLTTEISAWVS*LSFFTC
Trigger: GCAGGTGAAGAAGCTAAGCCATGACACCCACGCGCT...TATCTCAGTAGTTAGAGAAGTTTGGGCCTTAACAACCATTGTATGACCGTTAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
CDS-3UTR CCA 90 bp GTTAACGGTCATACAATGGTTGTTAAGGCCCAAACTTCTCTAACTACTGAGATACCCAGTCCCGCTTCGTaGAGATGGAAATCCTTGAGG +
Preference number: 4 (lower is better)
Translates to: VNGHTMVVKAQTSLTTEIPSPAS*RWKSLR
Trigger: CCTCAAGGATTTCCATCTCCACGAAGCGGGACTGGG...TATCTCAGTAGTTAGAGAAGTTTGGGCCTTAACAACCATTGTATGACCGTTAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
3UTR CAA 72 bp TCCTCCTTGGTGGAATCAGAAGCTCTCTACCCTGGGTaGATGACAGTTTTGTCTCAAGTTGTATCTGCTTCT +
Preference number: 4 (lower is better)
Translates to: SSLVESEALYPG*MTVLSQVVSAS
Trigger: AGAAGCAGATACAACTTGAGACAAAACTGTCATCAACCCAGGGTAGAGAGCTTCTGATTCCACCAAGGAGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
CDS-3UTR TCA 90 bp GTTAACGGTCATACAATGGTTGTTAAGGCCCAAACTTCTCTAACTACTGAGATACTCTGTTGTAGGACCTaGCATTCATTCTCTAGCAGG +
Preference number: 4 (lower is better)
Translates to: VNGHTMVVKAQTSLTTEILCCRT*HSFSSR
Trigger: CCTGCTAGAGAATGAATGTCAGGTCCTACAACAGAG...TATCTCAGTAGTTAGAGAAGTTTGGGCCTTAACAACCATTGTATGACCGTTAAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
CDS-3UTR CCA 90 bp AACGGTCATACAATGGTTGTTAAGGCCCAAACTTCTCTAACTACTGAGATAATAGCTATTCTTTGGTGGTaGGAAGGAGTGGTAGCAGAC +
Preference number: 4 (lower is better)
Translates to: NGHTMVVKAQTSLTTEIIAILWW*EGVVAD
Trigger: GTCTGCTACCACTCCTTCCCACCACCAAAGAATAGC...TATTATCTCAGTAGTTAGAGAAGTTTGGGCCTTAACAACCATTGTATGACCGTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
CDS-3UTR CCA 90 bp GTTAACGGTCATACAATGGTTGTTAAGGCCCAAACTTCTCTAACTACTGAGATAGATGCTATTCTTTGGTaGTGGGAAGGAGTGGTAGCA +
Preference number: 4 (lower is better)
Translates to: VNGHTMVVKAQTSLTTEIDAILW*WEGVVA
Trigger: TGCTACCACTCCTTCCCACCACCAAAGAATAGCATC...TATCTCAGTAGTTAGAGAAGTTTGGGCCTTAACAACCATTGTATGACCGTTAAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
CDS-3UTR GCA 90 bp GTTAACGGTCATACAATGGTTGTTAAGGCCCAAACTTCTCTAACTACTGAGATATCTCTACTGGACAGATaGTATTCTTTGGTGGTGGGA +
Preference number: 4 (lower is better)
Translates to: VNGHTMVVKAQTSLTTEISLLDR*YSLVVG
Trigger: TCCCACCACCAAAGAATAGCATCTGTCCAGTAGAGA...TATCTCAGTAGTTAGAGAAGTTTGGGCCTTAACAACCATTGTATGACCGTTAAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
CDS-3UTR GCA 90 bp GTTAACGGTCATACAATGGTTGTTAAGGCCCAAACTTCTCTAACTACTGAGATATTGTTGGGTTGGTTTTaGAAACAGGCTCGATCCTTG +
Preference number: 4 (lower is better)
Translates to: VNGHTMVVKAQTSLTTEILLGWF*KQARSL
Trigger: CAAGGATCGAGCCTGTTTGCAAAACCAACCCAACAA...TATCTCAGTAGTTAGAGAAGTTTGGGCCTTAACAACCATTGTATGACCGTTAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
CDS-3UTR TCA 90 bp AACGGTCATACAATGGTTGTTAAGGCCCAAACTTCTCTAACTACTGAGATAATATCGTTCTGGCATTCCTaGTATGACCTCATTAGTTCG +
Preference number: 4 (lower is better)
Translates to: NGHTMVVKAQTSLTTEIISFWHS*YDLISS
Trigger: CGAACTAATGAGGTCATATCAGGAATGCCAGAACGA...TATTATCTCAGTAGTTAGAGAAGTTTGGGCCTTAACAACCATTGTATGACCGTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
CDS-3UTR CCA 90 bp GTTAACGGTCATACAATGGTTGTTAAGGCCCAAACTTCTCTAACTACTGAGATATTGTCAGTAGTTTCTTaGGTTTCGTTCTGGCATTCC +
Preference number: 4 (lower is better)
Translates to: VNGHTMVVKAQTSLTTEILSVVS*VSFWHS
Trigger: GGAATGCCAGAACGAAACCCAAGAAACTACTGACAA...TATCTCAGTAGTTAGAGAAGTTTGGGCCTTAACAACCATTGTATGACCGTTAAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
CDS-3UTR CCA 90 bp TATTCAAATTTTCACTTGGTTAACGGTCATACAATGGTTGTTAAGGCCCAAACTACAGATGCTATTCTTTaGTGGTGGGAAGGAGTGGTA +
Preference number: 4 (lower is better)
Translates to: YSNFHLVNGHTMVVKAQTTDAIL*WWEGVV
Trigger: TACCACTCCTTCCCACCACCAAAGAATAGCATCTGT...AGTTTGGGCCTTAACAACCATTGTATGACCGTTAACCAAGTGAAAATTTGAATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
CDS-3UTR CCA 90 bp TATTCAAATTTTCACTTGGTTAACGGTCATACAATGGTTGTTAAGGCCCAAACTCCCTCTTTTCTCTACTaGACAGATGCTATTCTTTGG +
Preference number: 4 (lower is better)
Translates to: YSNFHLVNGHTMVVKAQTPSFLY*TDAILW
Trigger: CCAAAGAATAGCATCTGTCCAGTAGAGAAAAGAGGG...AGTTTGGGCCTTAACAACCATTGTATGACCGTTAACCAAGTGAAAATTTGAATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
CDS-3UTR TCA 90 bp TATTCAAATTTTCACTTGGTTAACGGTCATACAATGGTTGTTAAGGCCCAAACTTCTGACGTTAAGTTCTaGCAGGTCTTCAGGAATATA +
Preference number: 4 (lower is better)
Translates to: YSNFHLVNGHTMVVKAQTSDVKF*QVFRNI
Trigger: TATATTCCTGAAGACCTGTCAGAACTTAACGTCAGA...AGTTTGGGCCTTAACAACCATTGTATGACCGTTAACCAAGTGAAAATTTGAATA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
CDS-3UTR CCA 90 bp AACGGTCATACAATGGTTGTTAAGGCCCAAACTTCTCTAACTACTGAGATAATAATGTTCTTAGCACTCTaGTTTTTCAATAACATCTGC +
Preference number: 4 (lower is better)
Translates to: NGHTMVVKAQTSLTTEIIMFLAL*FFNNIC
Trigger: GCAGATGTTATTGAAAAACCAGAGTGCTAAGAACAT...TATTATCTCAGTAGTTAGAGAAGTTTGGGCCTTAACAACCATTGTATGACCGTT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
CDS GCA 90 bp GCGATCAAATGCAGCGCGTGGGTGTCATGGCTTAGCTTCTTCACCTaGTCCTCCAGCTTCTGCTTGGTGGATAGCCCATTGTTGGGTTGG +
Preference number: 5 (lower is better)
Translates to: AIKCSAWVSWLSFFT*SSSFCLVDSPLLGW
Trigger: CCAACCCAACAATGGGCTATCCACCAAGCAGAAGCTGGAGGAGCAGGTGAAGAAGCTAAGCCATGACACCCACGCGCTGCATTTGATCGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
CDS TCA 90 bp AACTGCTCCATGTTGTTCCTGAGTTTTCTGTACTCTCCGCGAAGGTaGAGGGATCCATTCCGCGGTCTTTTCACGCTCAGCAGCATGCCG +
Preference number: 5 (lower is better)
Translates to: NCSMLFLSFLYSPRR*RDPFRGLFTLSSMP
Trigger: CGGCATGCTGCTGAGCGTGAAAAGACCGCGGAATGGATCCCTTCACCTTCGCGGAGAGTACAGAAAACTCAGGAACAACATGGAGCAGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
CDS GCA 90 bp AGGATCTTCGGTTTCCTAATCGTGCCTTCCGTTGCCCTCGTGGTATaGTTGAAAGCGTCCGTCTTGTCTGCTTCCGCTAACTTCGGACAT +
Preference number: 5 (lower is better)
Translates to: RIFGFLIVPSVALVV*LKASVLSASANFGH
Trigger: ATGTCCGAAGTTAGCGGAAGCAGACAAGACGGACGCTTTCAAGCATACCACGAGGGCAACGGAAGGCACGATTAGGAAACCGAAGATCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
CDS TCA 90 bp TACTCCAGTGATCTGCTTCCTGCAGTAACTGCTCCATGTTGTTCCTaGGTTTTCTGTACTCTCCGCGAAGGTGAAGGGATCCATTCCGCG +
Preference number: 5 (lower is better)
Translates to: YSSDLLPAVTAPCCS*VFCTLREGEGIHSA
Trigger: CGCGGAATGGATCCCTTCACCTTCGCGGAGAGTACAGAAAACTCAGGAACAACATGGAGCAGTTACTGCAGGAAGCAGATCACTGGAGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
CDS TCA 90 bp AAGGCTTCTCGTGCCCCAGTCCCGCTTCGTGGAGATGGAAATCCTTaGGGATGTCTACCCTCTGTTGTAGGACCTGACATTCATTCTCTA +
Preference number: 5 (lower is better)
Translates to: KASRAPVPLRGDGNP*GCLPSVVGPDIHSL
Trigger: TAGAGAATGAATGTCAGGTCCTACAACAGAGGGTAGACATCCTCAAGGATTTCCATCTCCACGAAGCGGGACTGGGGCACGAGAAGCCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
CDS GCA 90 bp TCTTTTCACGCTCAGCAGCATGCCGTCGAAGCCTCTCGTTTCTTCTaGATTGCACAGGTCCCTTGCAAACTTTGGTACCATGTTCTTAGC +
Preference number: 5 (lower is better)
Translates to: SFHAQQHAVEASRFF*IAQVPCKLWYHVLS
Trigger: GCTAAGAACATGGTACCAAAGTTTGCAAGGGACCTGTGCAATGCAGAAGAAACGAGAGGCTTCGACGGCATGCTGCTGAGCGTGAAAAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
CDS-3UTR CAA 90 bp TCTCTACCCTGGGTTGATGACAGTTTTGTCTCAAGTTGTATCTGCTTCTGGCGAAGAGTTCGGTGGTTCTaGCTTAGCACCAGGAGCAGG +
Preference number: 5 (lower is better)
Translates to: SLPWVDDSFVSSCICFWRRVRWF*LSTRSR
Trigger: CCTGCTCCTGGTGCTAAGCAAGAACCACCGAACTCT...TCGCCAGAAGCAGATACAACTTGAGACAAAACTGTCATCAACCCAGGGTAGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
CDS-3UTR CAA 90 bp TCTCTACCCTGGGTTGATGACAGTTTTGTCTCAAGTTGTATCTGCTTCTGGCGATGGAGATGGAAATCCTaGAGGATGTCTACCCTCTGT +
Preference number: 5 (lower is better)
Translates to: SLPWVDDSFVSSCICFWRWRWKS*RMSTLC
Trigger: ACAGAGGGTAGACATCCTCAAGGATTTCCATCTCCA...TCGCCAGAAGCAGATACAACTTGAGACAAAACTGTCATCAACCCAGGGTAGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
CDS TCA 90 bp CTTGGGTTTCGTTCTGGCATTCCTGATATGACCTCATTAGTTCGCTaGGTTCGTTATGCTGTTTACTCCAGTGATCTGCTTCCTGCAGTA +
Preference number: 5 (lower is better)
Translates to: LGFRSGIPDMTSLVR*VRYAVYSSDLLPAV
Trigger: TACTGCAGGAAGCAGATCACTGGAGTAAACAGCATAACGAACTCAGCGAACTAATGAGGTCATATCAGGAATGCCAGAACGAAACCCAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
CDS TCA 90 bp TATGACCTCATTAGTTCGCTGAGTTCGTTATGCTGTTTACTCCAGTaGTCTGCTTCCTGCAGTAACTGCTCCATGTTGTTCCTGAGTTTT +
Preference number: 5 (lower is better)
Translates to: YDLISSLSSLCCLLQ*SASCSNCSMLFLSF
Trigger: AAAACTCAGGAACAACATGGAGCAGTTACTGCAGGAAGCAGATCACTGGAGTAAACAGCATAACGAACTCAGCGAACTAATGAGGTCATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
CDS-3UTR CAA 90 bp TATTCAAATTTTCACTTGGTTAACGGTCATACAATGGTTGTTAAGGCCCAAACTGACAGATGCTATTCTTaGGTGGTGGGAAGGAGTGGT +
Preference number: 5 (lower is better)
Translates to: YSNFHLVNGHTMVVKAQTDRCYS*VVGRSG
Trigger: ACCACTCCTTCCCACCACCAAAGAATAGCATCTGTC...AGTTTGGGCCTTAACAACCATTGTATGACCGTTAACCAAGTGAAAATTTGAATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
CDS-3UTR CAA 90 bp TATTCAAATTTTCACTTGGTTAACGGTCATACAATGGTTGTTAAGGCCCAAACTCTCGTTTCTTCTGCATaGCACAGGTCCCTTGCAAAC +
Preference number: 5 (lower is better)
Translates to: YSNFHLVNGHTMVVKAQTLVSSA*HRSLAN
Trigger: GTTTGCAAGGGACCTGTGCAATGCAGAAGAAACGAG...AGTTTGGGCCTTAACAACCATTGTATGACCGTTAACCAAGTGAAAATTTGAATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
CDS-3UTR CAA 90 bp GTTAACGGTCATACAATGGTTGTTAAGGCCCAAACTTCTCTAACTACTGAGATAACGCCTGCTATGTTTTaGAGAACATCCTTAACGTCT +
Preference number: 5 (lower is better)
Translates to: VNGHTMVVKAQTSLTTEITPAMF*RTSLTS
Trigger: AGACGTTAAGGATGTTCTCAAAAACATAGCAGGCGT...TATCTCAGTAGTTAGAGAAGTTTGGGCCTTAACAACCATTGTATGACCGTTAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
CDS-3UTR CAA 90 bp AACGGTCATACAATGGTTGTTAAGGCCCAAACTTCTCTAACTACTGAGATAATATTGGTGGATAGCCCATaGTTGGGTTGGTTTTGCAAA +
Preference number: 5 (lower is better)
Translates to: NGHTMVVKAQTSLTTEIILVDSP*LGWFCK
Trigger: TTTGCAAAACCAACCCAACAATGGGCTATCCACCAA...TATTATCTCAGTAGTTAGAGAAGTTTGGGCCTTAACAACCATTGTATGACCGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
CDS-3UTR CAA 90 bp AACGGTCATACAATGGTTGTTAAGGCCCAAACTTCTCTAACTACTGAGATAATAAGTAACTGCTCCATGTaGTTCCTGAGTTTTCTGTAC +
Preference number: 5 (lower is better)
Translates to: NGHTMVVKAQTSLTTEIISNCSM*FLSFLY
Trigger: GTACAGAAAACTCAGGAACAACATGGAGCAGTTACT...TATTATCTCAGTAGTTAGAGAAGTTTGGGCCTTAACAACCATTGTATGACCGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
CDS-3UTR CAA 90 bp TATTCAAATTTTCACTTGGTTAACGGTCATACAATGGTTGTTAAGGCCCAAACTAAACAGGCTCGATCCTaGTCAGTAGTTTCTTGGGTT +
Preference number: 5 (lower is better)
Translates to: YSNFHLVNGHTMVVKAQTKQARS*SVVSWV
Trigger: AACCCAAGAAACTACTGACAAGGATCGAGCCTGTTT...AGTTTGGGCCTTAACAACCATTGTATGACCGTTAACCAAGTGAAAATTTGAATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
CDS-3UTR CAA 90 bp AACGGTCATACAATGGTTGTTAAGGCCCAAACTTCTCTAACTACTGAGATAATAATAACATCTGCTTCATaGTGTTCTGTTCTCTCTCTG +
Preference number: 5 (lower is better)
Translates to: NGHTMVVKAQTSLTTEIIITSAS*CSVLSL
Trigger: CAGAGAGAGAACAGAACACAATGAAGCAGATGTTAT...TATTATCTCAGTAGTTAGAGAAGTTTGGGCCTTAACAACCATTGTATGACCGTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
CDS-3UTR CAA 90 bp TATTCAAATTTTCACTTGGTTAACGGTCATACAATGGTTGTTAAGGCCCAAACTACGTCTTTTAAGAGATaGCTAAATTTCTGTACCCTC +
Preference number: 5 (lower is better)
Translates to: YSNFHLVNGHTMVVKAQTTSFKR*LNFCTL
Trigger: GAGGGTACAGAAATTTAGCAATCTCTTAAAAGACGT...AGTTTGGGCCTTAACAACCATTGTATGACCGTTAACCAAGTGAAAATTTGAATA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
CDS CCA 72 bp TCATTCTCTAGCAGGGCTGCGATCAAATGCAGCGCGTaGGTGTCATGGCTTAGCTTCTTCACCTGCTCCTCC +
Preference number: 6 (lower is better)
Translates to: SFSSRAAIKCSA*VSWLSFFTCSS
Trigger: GGAGGAGCAGGTGAAGAAGCTAAGCCATGACACCCACGCGCTGCATTTGATCGCAGCCCTGCTAGAGAATGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
CDS TCA 72 bp TGGTGGTGGGAAGGAGTGGTAGCAGACAGTGGGGAGTaGTCCGATTTCAAGGAGGGAAATGGTGATCCCAGA +
Preference number: 6 (lower is better)
Translates to: WWWEGVVADSGE*SDFKEGNGDPR
Trigger: TCTGGGATCACCATTTCCCTCCTTGAAATCGGATCACTCCCCACTGTCTGCTACCACTCCTTCCCACCACCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
CDS GCA 72 bp GGTTTCCTAATCGTGCCTTCCGTTGCCCTCGTGGTATaGTTGAAAGCGTCCGTCTTGTCTGCTTCCGCTAAC +
Preference number: 6 (lower is better)
Translates to: GFLIVPSVALVV*LKASVLSASAN
Trigger: GTTAGCGGAAGCAGACAAGACGGACGCTTTCAAGCATACCACGAGGGCAACGGAAGGCACGATTAGGAAACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
CDS CAA 90 bp ATCGTGCCTTCCGTTGCCCTCGTGGTATGCTTGAAAGCGTCCGTCTaGTCTGCTTCCGCTAACTTCGGACATTTCTTGTCCTGCTCACAG +
Preference number: 6 (lower is better)
Translates to: IVPSVALVVCLKASV*SASANFGHFLSCSQ
Trigger: CTGTGAGCAGGACAAGAAATGTCCGAAGTTAGCGGAAGCAGACAAGACGGACGCTTTCAAGCATACCACGAGGGCAACGGAAGGCACGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
CDS GCA 72 bp GCTCAGCAGCATGCCGTCGAAGCCTCTCGTTTCTTCTaGATTGCACAGGTCCCTTGCAAACTTTGGTACCAT +
Preference number: 6 (lower is better)
Translates to: AQQHAVEASRFF*IAQVPCKLWYH
Trigger: ATGGTACCAAAGTTTGCAAGGGACCTGTGCAATGCAGAAGAAACGAGAGGCTTCGACGGCATGCTGCTGAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
CDS GCA 72 bp TTGTCTGCTTCCGCTAACTTCGGACATTTCTTGTCCTaGTCACAGGACATCTGCAAAGGCTTCTCGTGCCCC +
Preference number: 6 (lower is better)
Translates to: LSASANFGHFLS*SQDICKGFSCP
Trigger: GGGGCACGAGAAGCCTTTGCAGATGTCCTGTGAGCAGGACAAGAAATGTCCGAAGTTAGCGGAAGCAGACAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
CDS CCA 72 bp CCTCCCTCTTTTCTCTACTGGACAGATGCTATTCTTTaGTGGTGGGAAGGAGTGGTAGCAGACAGTGGGGAG +
Preference number: 6 (lower is better)
Translates to: PPSFLYWTDAIL*WWEGVVADSGE
Trigger: CTCCCCACTGTCTGCTACCACTCCTTCCCACCACCAAAGAATAGCATCTGTCCAGTAGAGAAAAGAGGGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
CDS CCA 72 bp GCTCCTCCAGCTTCTGCTTGGTGGATAGCCCATTGTTaGGTTGGTTTTGCAAACAGGCTCGATCCTTGTCAG +
Preference number: 6 (lower is better)
Translates to: APPASAWWIAHC*VGFANRLDPCQ
Trigger: CTGACAAGGATCGAGCCTGTTTGCAAAACCAACCCAACAATGGGCTATCCACCAAGCAGAAGCTGGAGGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
CDS CAA 72 bp CCCTCCCTCTTTTCTCTACTGGACAGATGCTATTCTTaGGTGGTGGGAAGGAGTGGTAGCAGACAGTGGGGA +
Preference number: 6 (lower is better)
Translates to: PSLFSLLDRCYS*VVGRSGSRQWG
Trigger: TCCCCACTGTCTGCTACCACTCCTTCCCACCACCAAAGAATAGCATCTGTCCAGTAGAGAAAAGAGGGAGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
CDS CAA 72 bp ACCTGCTCCTCCAGCTTCTGCTTGGTGGATAGCCCATaGTTGGGTTGGTTTTGCAAACAGGCTCGATCCTTG +
Preference number: 6 (lower is better)
Translates to: TCSSSFCLVDSP*LGWFCKQARSL
Trigger: CAAGGATCGAGCCTGTTTGCAAAACCAACCCAACAATGGGCTATCCACCAAGCAGAAGCTGGAGGAGCAGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
CDS CAA 72 bp TTCCTAATCGTGCCTTCCGTTGCCCTCGTGGTATGCTaGAAAGCGTCCGTCTTGTCTGCTTCCGCTAACTTC +
Preference number: 6 (lower is better)
Translates to: FLIVPSVALVVC*KASVLSASANF
Trigger: GAAGTTAGCGGAAGCAGACAAGACGGACGCTTTCAAGCATACCACGAGGGCAACGGAAGGCACGATTAGGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
CDS CAA 90 bp TTGAAAGCGTCCGTCTTGTCTGCTTCCGCTAACTTCGGACATTTCTaGTCCTGCTCACAGGACATCTGCAAAGGCTTCTCGTGCCCCAGT +
Preference number: 6 (lower is better)
Translates to: LKASVLSASANFGHF*SCSQDICKGFSCPS
Trigger: ACTGGGGCACGAGAAGCCTTTGCAGATGTCCTGTGAGCAGGACAAGAAATGTCCGAAGTTAGCGGAAGCAGACAAGACGGACGCTTTCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
CDS CAA 90 bp ATCTTCGGTTTCCTAATCGTGCCTTCCGTTGCCCTCGTGGTATGCTaGAAAGCGTCCGTCTTGTCTGCTTCCGCTAACTTCGGACATTTC +
Preference number: 6 (lower is better)
Translates to: IFGFLIVPSVALVVC*KASVLSASANFGHF
Trigger: GAAATGTCCGAAGTTAGCGGAAGCAGACAAGACGGACGCTTTCAAGCATACCACGAGGGCAACGGAAGGCACGATTAGGAAACCGAAGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
CDS GCA 72 bp GCAGCATGCCGTCGAAGCCTCTCGTTTCTTCTGCATTaGACAGGTCCCTTGCAAACTTTGGTACCATGTTCT +
Preference number: 6 (lower is better)
Translates to: AACRRSLSFLLH*TGPLQTLVPCS
Trigger: AGAACATGGTACCAAAGTTTGCAAGGGACCTGTGCAATGCAGAAGAAACGAGAGGCTTCGACGGCATGCTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
CDS GCA 72 bp GCTAACGGTTCTCCTTTTCCCCACCAGAGATTTCTTTaGAACACGGGCGTTGAAGCGGTTATTCCGAGCCTT +
Preference number: 6 (lower is better)
Translates to: ANGSPFPHQRFL*NTGVEAVIPSL
Trigger: AAGGCTCGGAATAACCGCTTCAACGCCCGTGTTGCAAAGAAATCTCTGGTGGGGAAAAGGAGAACCGTTAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
CDS CAA 72 bp TGCTCCTCCAGCTTCTGCTTGGTGGATAGCCCATTGTaGGGTTGGTTTTGCAAACAGGCTCGATCCTTGTCA +
Preference number: 6 (lower is better)
Translates to: CSSSFCLVDSPL*GWFCKQARSLS
Trigger: TGACAAGGATCGAGCCTGTTTGCAAAACCAACCCAACAATGGGCTATCCACCAAGCAGAAGCTGGAGGAGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
CDS CAA 72 bp TCCGTCTTGTCTGCTTCCGCTAACTTCGGACATTTCTaGTCCTGCTCACAGGACATCTGCAAAGGCTTCTCG +
Preference number: 6 (lower is better)
Translates to: SVLSASANFGHF*SCSQDICKGFS
Trigger: CGAGAAGCCTTTGCAGATGTCCTGTGAGCAGGACAAGAAATGTCCGAAGTTAGCGGAAGCAGACAAGACGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
CDS CAA 90 bp ATTTCTGTACCCTCCCTCTTTTCTCTACTGGACAGATGCTATTCTTaGGTGGTGGGAAGGAGTGGTAGCAGACAGTGGGGAGTGATCCGA +
Preference number: 6 (lower is better)
Translates to: ISVPSLFSLLDRCYS*VVGRSGSRQWGVIR
Trigger: TCGGATCACTCCCCACTGTCTGCTACCACTCCTTCCCACCACCAAAGAATAGCATCTGTCCAGTAGAGAAAAGAGGGAGGGTACAGAAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
CDS TCA 72 bp GATCTGCTTCCTGCAGTAACTGCTCCATGTTGTTCCTaGGTTTTCTGTACTCTCCGCGAAGGTGAAGGGATC +
Preference number: 6 (lower is better)
Translates to: DLLPAVTAPCCS*VFCTLREGEGI
Trigger: GATCCCTTCACCTTCGCGGAGAGTACAGAAAACTCAGGAACAACATGGAGCAGTTACTGCAGGAAGCAGATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
CDS TCA 72 bp AAATCCTTGAGGATGTCTACCCTCTGTTGTAGGACCTaGCATTCATTCTCTAGCAGGGCTGCGATCAAATGC +
Preference number: 6 (lower is better)
Translates to: KSLRMSTLCCRT*HSFSSRAAIKC
Trigger: GCATTTGATCGCAGCCCTGCTAGAGAATGAATGTCAGGTCCTACAACAGAGGGTAGACATCCTCAAGGATTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
CDS GCA 72 bp GAAGCCTCTCGTTTCTTCTGCATTGCACAGGTCCCTTaGAAACTTTGGTACCATGTTCTTAGCACTCTGGTT +
Preference number: 6 (lower is better)
Translates to: EASRFFCIAQVP*KLWYHVLSTLV
Trigger: AACCAGAGTGCTAAGAACATGGTACCAAAGTTTGCAAGGGACCTGTGCAATGCAGAAGAAACGAGAGGCTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
CDS GCA 72 bp TTCTGCTTGGTGGATAGCCCATTGTTGGGTTGGTTTTaGAAACAGGCTCGATCCTTGTCAGTAGTTTCTTGG +
Preference number: 6 (lower is better)
Translates to: FCLVDSPLLGWF*KQARSLSVVSW
Trigger: CCAAGAAACTACTGACAAGGATCGAGCCTGTTTGCAAAACCAACCCAACAATGGGCTATCCACCAAGCAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
CDS CAA 72 bp CCATTGTTGGGTTGGTTTTGCAAACAGGCTCGATCCTaGTCAGTAGTTTCTTGGGTTTCGTTCTGGCATTCC +
Preference number: 6 (lower is better)
Translates to: PLLGWFCKQARS*SVVSWVSFWHS
Trigger: GGAATGCCAGAACGAAACCCAAGAAACTACTGACAAGGATCGAGCCTGTTTGCAAAACCAACCCAACAATGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
CDS TCA 72 bp CGTTCTGGCATTCCTGATATGACCTCATTAGTTCGCTaGGTTCGTTATGCTGTTTACTCCAGTGATCTGCTT +
Preference number: 6 (lower is better)
Translates to: RSGIPDMTSLVR*VRYAVYSSDLL
Trigger: AAGCAGATCACTGGAGTAAACAGCATAACGAACTCAGCGAACTAATGAGGTCATATCAGGAATGCCAGAACG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
CDS TCA 72 bp TTGTCAGTAGTTTCTTGGGTTTCGTTCTGGCATTCCTaGTATGACCTCATTAGTTCGCTGAGTTCGTTATGC +
Preference number: 6 (lower is better)
Translates to: LSVVSWVSFWHS*YDLISSLSSLC
Trigger: GCATAACGAACTCAGCGAACTAATGAGGTCATATCAGGAATGCCAGAACGAAACCCAAGAAACTACTGACAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6
CDS GCA 72 bp ACCATGTTCTTAGCACTCTGGTTTTTCAATAACATCTaGTTCATTGTGTTCTGTTCTCTCTCTGGGTCGAAA +
Preference number: 6 (lower is better)
Translates to: TMFLALWFFNNI*FIVFCSLSGSK
Trigger: TTTCGACCCAGAGAGAGAACAGAACACAATGAAGCAGATGTTATTGAAAAACCAGAGTGCTAAGAACATGGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000050658.6