RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SPX (Mus musculus)

Ensembl gene IDs: ENSMUSG00000071112

Ensembl transcript IDs: ENSMUST00000126521.9, ENSMUST00000211094.2

Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GGTCCTCAGTTTTCACAGACCTTCCAGCAGTTTCAGCATCATGGATaGTGCCCTGTTTCAGCAGCGACAGAGATGTGTTTTCATGGGAGC +
Preference number: 1 (lower is better)
Translates to: GPQFSQTFQQFQHHG*CPVSAATEMCFHGS
Trigger: GCTCCCATGAAAACACATCTCTGTCGCTGCTGAAACAGGGCACCATCCATGATGCTGAAACTGCTGGAAGGTCTGTGAAAACTGAGGACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211094.2
3UTR CCA 90 bp TCATGGATGGTGCCCTGTTTCAGCAGCGACAGAGATGTGTTTTCATaGGAGCTTTATCAGGCATCTTCTCCTTGCCTCCCTCCTTATTTG +
Preference number: 1 (lower is better)
Translates to: SWMVPCFSSDRDVFS*ELYQASSPCLPPYL
Trigger: CAAATAAGGAGGGAGGCAAGGAGAAGATGCCTGATAAAGCTCCCATGAAAACACATCTCTGTCGCTGCTGAAACAGGGCACCATCCATGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211094.2
3UTR GCA 90 bp GACAGAGATGTGTTTTCATGGGAGCTTTATCAGGCATCTTCTCCTTaGCTCCCTCCTTATTTGACCTCGCAGACGAGTTCCTATCTAGGA +
Preference number: 1 (lower is better)
Translates to: DRDVFSWELYQASSP*LPPYLTSQTSSYLG
Trigger: TCCTAGATAGGAACTCGTCTGCGAGGTCAAATAAGGAGGGAGGCAAGGAGAAGATGCCTGATAAAGCTCCCATGAAAACACATCTCTGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211094.2
3UTR CCA 90 bp TGTGCCTGTGCATGTGTGTGCATGGGAAAGGGTAAATCATGCATGTaGCACTCACTTGTGTCATGGGAATACCTTAATGCAAAGTCACAG +
Preference number: 1 (lower is better)
Translates to: CACACVCMGKGKSCM*HSLVSWEYLNAKSQ
Trigger: CTGTGACTTTGCATTAAGGTATTCCCATGACACAAGTGAGTGCCACATGCATGATTTACCCTTTCCCATGCACACACATGCACAGGCACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211094.2
3UTR CCA 90 bp ACTCACTTGTGTCATGGGAATACCTTAATGCAAAGTCACAGAAGATaGACTACCTCTGAACCTGAACAACTGGTTTGTACCTTTGTGTGC +
Preference number: 1 (lower is better)
Translates to: THLCHGNTLMQSHRR*TTSEPEQLVCTFVC
Trigger: GCACACAAAGGTACAAACCAGTTGTTCAGGTTCAGAGGTAGTCCATCTTCTGTGACTTTGCATTAAGGTATTCCCATGACACAAGTGAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211094.2
3UTR-3UTR CCA 90 bp GAACAACTGGTTTGTACCTTTGTGTGCCGTGTGCTCCAGCAAACTCTGACATCACACCCTCTCTCTCACTaGGGCTGGGACGATGAGGGA +
Preference number: 2 (lower is better)
Translates to: EQLVCTFVCRVLQQTLTSHPLSH*GWDDEG
Trigger: TCCCTCATCGTCCCAGCCCCAGTGAGAGAGAGGGTG...TGATGTCAGAGTTTGCTGGAGCACACGGCACACAAAGGTACAAACCAGTTGTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211094.2
3UTR-3UTR TCA 90 bp CGGTCCTCAGTTTTCACAGACCTTCCAGCAGTTTCAGCATCATGGATGGTGCCCCTCAGCCTTGACACGTaGAAGGCCCTGAATAATCCA +
Preference number: 2 (lower is better)
Translates to: RSSVFTDLPAVSASWMVPLSLDT*KALNNP
Trigger: TGGATTATTCAGGGCCTTTCACGTGTCAAGGCTGAG...GGGCACCATCCATGATGCTGAAACTGCTGGAAGGTCTGTGAAAACTGAGGACCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211094.2
3UTR-3UTR CCA 90 bp CACTGTGTGCGTGTGCATGTGCCTGTGCATGTGTGTGCATGGGAAAGGGTAAATCCCCTCGTGTGGTTCTaGTTTCCATCACAACGAGGA +
Preference number: 2 (lower is better)
Translates to: HCVRVHVPVHVCAWERVNPLVWF*FPSQRG
Trigger: TCCTCGTTGTGATGGAAACCAGAACCACACGAGGGG...ATTTACCCTTTCCCATGCACACACATGCACAGGCACATGCACACGCACACAGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211094.2
3UTR-3UTR TCA 90 bp GTCCTCAGTTTTCACAGACCTTCCAGCAGTTTCAGCATCATGGATGGTGCCCTGACACGTGAAAGGCCCTaGATAATCCAAGCCTACGTA +
Preference number: 2 (lower is better)
Translates to: VLSFHRPSSSFSIMDGALTRERP*IIQAYV
Trigger: TACGTAGGCTTGGATTATTCAGGGCCTTTCACGTGT...CAGGGCACCATCCATGATGCTGAAACTGCTGGAAGGTCTGTGAAAACTGAGGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211094.2
3UTR-3UTR TCA 90 bp TCTAAGCTTCTATGTGGAGTTCAGTTAGGTCCTAGGAGCACAAAGAGGCTCCCGAATCAAAGCAGGGCCTaGCTGCAGGGAGAAGAAAGA +
Preference number: 2 (lower is better)
Translates to: SKLLCGVQLGPRSTKRLPNQSRA*LQGEER
Trigger: TCTTTCTTCTCCCTGCAGTCAGGCCCTGCTTTGATT...CGGGAGCCTCTTTGTGCTCCTAGGACCTAACTGAACTCCACATAGAAGCTTAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211094.2
3UTR CAA 90 bp TCATGGGAGCTTTATCAGGCATCTTCTCCTTGCCTCCCTCCTTATTaGACCTCGCAGACGAGTTCCTATCTAGGAGATCCTATCCATTCC +
Preference number: 2 (lower is better)
Translates to: SWELYQASSPCLPPY*TSQTSSYLGDPIHS
Trigger: GGAATGGATAGGATCTCCTAGATAGGAACTCGTCTGCGAGGTCAAATAAGGAGGGAGGCAAGGAGAAGATGCCTGATAAAGCTCCCATGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211094.2
3UTR-3UTR GCA 90 bp GAACAACTGGTTTGTACCTTTGTGTGCCGTGTGCTCCAGCAAACTCTGACATCACAGGCATCTTCTCCTTaGCTCCCTCCTTATTTGACC +
Preference number: 2 (lower is better)
Translates to: EQLVCTFVCRVLQQTLTSQASSP*LPPYLT
Trigger: GGTCAAATAAGGAGGGAGGCAAGGAGAAGATGCCTG...TGATGTCAGAGTTTGCTGGAGCACACGGCACACAAAGGTACAAACCAGTTGTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211094.2
3UTR-3UTR CCA 90 bp ACACACACACACACACACGGTGATCAAGATGTAATTCCAAATAAGTTAGTCTCCCTCTCTCACTGGGGCTaGGACGATGAGGGACAGCGA +
Preference number: 2 (lower is better)
Translates to: THTHTHGDQDVIPNKLVSLSHWG*DDEGQR
Trigger: TCGCTGTCCCTCATCGTCCCAGCCCCAGTGAGAGAG...GGAGACTAACTTATTTGGAATTACATCTTGATCACCGTGTGTGTGTGTGTGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211094.2
3UTR-3UTR CCA 90 bp TCACTGTGTGCGTGTGCATGTGCCTGTGCATGTGTGTGCATGGGAAAGGGTAAACTGAACCTGAACAACTaGTTTGTACCTTTGTGTGCC +
Preference number: 2 (lower is better)
Translates to: SLCACACACACVCMGKGKLNLNN*FVPLCA
Trigger: GGCACACAAAGGTACAAACCAGTTGTTCAGGTTCAG...TTTACCCTTTCCCATGCACACACATGCACAGGCACATGCACACGCACACAGTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211094.2
3UTR-3UTR TCA 90 bp ACACACACACACACACACGGTGATCAAGATGTAATTCCAAATAAGTTAGTCTCCCTGGGGCTGGGACGATaGGGGACAGCGATATTTGCT +
Preference number: 2 (lower is better)
Translates to: THTHTHGDQDVIPNKLVSLGLGR*GTAIFA
Trigger: AGCAAATATCGCTGTCCCTCATCGTCCCAGCCCCAG...GGAGACTAACTTATTTGGAATTACATCTTGATCACCGTGTGTGTGTGTGTGTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211094.2
3UTR-3UTR CCA 90 bp GAACAACTGGTTTGTACCTTTGTGTGCCGTGTGCTCCAGCAAACTCTGACATCAAGCCTACGTAAGACATaGGTGATGTTCCAGCCAATG +
Preference number: 2 (lower is better)
Translates to: EQLVCTFVCRVLQQTLTSSLRKT*VMFQPM
Trigger: CATTGGCTGGAACATCACCCATGTCTTACGTAGGCT...TGATGTCAGAGTTTGCTGGAGCACACGGCACACAAAGGTACAAACCAGTTGTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211094.2
3UTR-3UTR CCA 90 bp CGGTCCTCAGTTTTCACAGACCTTCCAGCAGTTTCAGCATCATGGATGGTGCCCAAGGCAAGGGAATTATaGGATAAGAAAACAAACGGC +
Preference number: 2 (lower is better)
Translates to: RSSVFTDLPAVSASWMVPKAREL*DKKTNG
Trigger: GCCGTTTGTTTTCTTATCCCATAATTCCCTTGCCTT...GGGCACCATCCATGATGCTGAAACTGCTGGAAGGTCTGTGAAAACTGAGGACCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211094.2
3UTR-3UTR TCA 90 bp GAACAACTGGTTTGTACCTTTGTGTGCCGTGTGCTCCAGCAAACTCTGACATCAAAGAAAGAACATTTCTaGGTTCTCAGCCTTGACACG +
Preference number: 2 (lower is better)
Translates to: EQLVCTFVCRVLQQTLTSKKEHF*VLSLDT
Trigger: CGTGTCAAGGCTGAGAACTCAGAAATGTTCTTTCTT...TGATGTCAGAGTTTGCTGGAGCACACGGCACACAAAGGTACAAACCAGTTGTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211094.2
3UTR CAA 90 bp CATGTGTGTGCATGGGAAAGGGTAAATCATGCATGTGGCACTCACTaGTGTCATGGGAATACCTTAATGCAAAGTCACAGAAGATGGACT +
Preference number: 2 (lower is better)
Translates to: HVCAWERVNHACGTH*CHGNTLMQSHRRWT
Trigger: AGTCCATCTTCTGTGACTTTGCATTAAGGTATTCCCATGACACAAGTGAGTGCCACATGCATGATTTACCCTTTCCCATGCACACACATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211094.2
3UTR-3UTR CCA 90 bp TGGTATAGGGATTTCACTCCCAAATTCCTTCACTGTGTGCGTGTGCATGTGCCTAGAGATGTGTTTTCATaGGAGCTTTATCAGGCATCT +
Preference number: 2 (lower is better)
Translates to: WYRDFTPKFLHCVRVHVPRDVFS*ELYQAS
Trigger: AGATGCCTGATAAAGCTCCCATGAAAACACATCTCT...AGGCACATGCACACGCACACAGTGAAGGAATTTGGGAGTGAAATCCCTATACCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211094.2
3UTR CCA 72 bp CTATCCATTCCCTTCCCGGTGCACCCTCTCTCTCACTaGGGCTGGGACGATGAGGGACAGCGATATTTGCTT +
Preference number: 3 (lower is better)
Translates to: LSIPFPVHPLSH*GWDDEGQRYLL
Trigger: AAGCAAATATCGCTGTCCCTCATCGTCCCAGCCCCAGTGAGAGAGAGGGTGCACCGGGAAGGGAATGGATAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211094.2
3UTR CCA 72 bp GTGCCCTGTTTCAGCAGCGACAGAGATGTGTTTTCATaGGAGCTTTATCAGGCATCTTCTCCTTGCCTCCCT +
Preference number: 3 (lower is better)
Translates to: VPCFSSDRDVFS*ELYQASSPCLP
Trigger: AGGGAGGCAAGGAGAAGATGCCTGATAAAGCTCCCATGAAAACACATCTCTGTCGCTGCTGAAACAGGGCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211094.2
3UTR GCA 72 bp ACCTCTGAACCTGAACAACTGGTTTGTACCTTTGTGTaGCGTGTGCTCCAGCAAACTCTGACATCACCATCT +
Preference number: 3 (lower is better)
Translates to: TSEPEQLVCTFV*RVLQQTLTSPS
Trigger: AGATGGTGATGTCAGAGTTTGCTGGAGCACACGGCACACAAAGGTACAAACCAGTTGTTCAGGTTCAGAGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211094.2
3UTR-3UTR CAA 90 bp TGCATGTGGCACTCACTTGTGTCATGGGAATACCTTAATGCAAAGTCACAGAAGTCAGGCATCTTCTCCTaGCCTCCCTCCTTATTTGAC +
Preference number: 3 (lower is better)
Translates to: CMWHSLVSWEYLNAKSQKSGIFS*PPSLFD
Trigger: GTCAAATAAGGAGGGAGGCAAGGAGAAGATGCCTGA...CTTCTGTGACTTTGCATTAAGGTATTCCCATGACACAAGTGAGTGCCACATGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211094.2
3UTR CCA 72 bp TTTTCACAGACCTTCCAGCAGTTTCAGCATCATGGATaGTGCCCTGTTTCAGCAGCGACAGAGATGTGTTTT +
Preference number: 3 (lower is better)
Translates to: FSQTFQQFQHHG*CPVSAATEMCF
Trigger: AAAACACATCTCTGTCGCTGCTGAAACAGGGCACCATCCATGATGCTGAAACTGCTGGAAGGTCTGTGAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211094.2
3UTR-3UTR CAA 90 bp TGGTATAGGGATTTCACTCCCAAATTCCTTCACTGTGTGCGTGTGCATGTGCCTGACATCACCATCTGTTaGTGTGTCAGTAACCTTAAG +
Preference number: 3 (lower is better)
Translates to: WYRDFTPKFLHCVRVHVPDITIC*CVSNLK
Trigger: CTTAAGGTTACTGACACACAAACAGATGGTGATGTC...AGGCACATGCACACGCACACAGTGAAGGAATTTGGGAGTGAAATCCCTATACCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211094.2
3UTR CCA 72 bp GCATGTGTGTGCATGGGAAAGGGTAAATCATGCATGTaGCACTCACTTGTGTCATGGGAATACCTTAATGCA +
Preference number: 3 (lower is better)
Translates to: ACVCMGKGKSCM*HSLVSWEYLNA
Trigger: TGCATTAAGGTATTCCCATGACACAAGTGAGTGCCACATGCATGATTTACCCTTTCCCATGCACACACATGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211094.2
3UTR CCA 72 bp TGTCATGGGAATACCTTAATGCAAAGTCACAGAAGATaGACTACCTCTGAACCTGAACAACTGGTTTGTACC +
Preference number: 3 (lower is better)
Translates to: CHGNTLMQSHRR*TTSEPEQLVCT
Trigger: GGTACAAACCAGTTGTTCAGGTTCAGAGGTAGTCCATCTTCTGTGACTTTGCATTAAGGTATTCCCATGACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211094.2
3UTR CCA 72 bp AAGGGTAAATCATGCATGTGGCACTCACTTGTGTCATaGGAATACCTTAATGCAAAGTCACAGAAGATGGAC +
Preference number: 3 (lower is better)
Translates to: KGKSCMWHSLVS*EYLNAKSQKMD
Trigger: GTCCATCTTCTGTGACTTTGCATTAAGGTATTCCCATGACACAAGTGAGTGCCACATGCATGATTTACCCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211094.2
CDS-3UTR CCA 90 bp GACATGGGTGATGTTCCAGCCAATGGTGATGTTCCAGCCAGTGGTAATGTTCCACAGGGCTGCAGCCTCTaGGAGAGTCAGCAGTTCAAG +
Preference number: 4 (lower is better)
Translates to: DMGDVPANGDVPASGNVPQGCSL*ESQQFK
Trigger: CTTGAACTGCTGACTCTCCCAGAGGCTGCAGCCCTG...TGGAACATTACCACTGGCTGGAACATCACCATTGGCTGGAACATCACCCATGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211094.2
3UTR CAA 72 bp TCTCACTGGGGCTGGGACGATGAGGGACAGCGATATTaGCTTCTGAGTGGCACCAAAGGCAAGGGAATTATG +
Preference number: 4 (lower is better)
Translates to: SHWGWDDEGQRY*LLSGTKGKGIM
Trigger: CATAATTCCCTTGCCTTTGGTGCCACTCAGAAGCAAATATCGCTGTCCCTCATCGTCCCAGCCCCAGTGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211094.2
CDS-3UTR CCA 90 bp TCTAAGCTTCTATGTGGAGTTCAGTTAGGTCCTAGGAGCACAAAGAGGCTCCCGCTCAGAGAGTCGCTGTaGAGCACCGCTGGAGTTTTC +
Preference number: 4 (lower is better)
Translates to: SKLLCGVQLGPRSTKRLPLRESL*STAGVF
Trigger: GAAAACTCCAGCGGTGCTCCACAGCGACTCTCTGAG...CGGGAGCCTCTTTGTGCTCCTAGGACCTAACTGAACTCCACATAGAAGCTTAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211094.2
3UTR CAA 72 bp TGTGTTTTCATGGGAGCTTTATCAGGCATCTTCTCCTaGCCTCCCTCCTTATTTGACCTCGCAGACGAGTTC +
Preference number: 4 (lower is better)
Translates to: CVFMGALSGIFS*PPSLFDLADEF
Trigger: GAACTCGTCTGCGAGGTCAAATAAGGAGGGAGGCAAGGAGAAGATGCCTGATAAAGCTCCCATGAAAACACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211094.2
CDS-3UTR TCA 90 bp GACATGGGTGATGTTCCAGCCAATGGTGATGTTCCAGCCAGTGGTAATGTTCCATCCTTCATCTTTTTGTaGTTTTTCCAAGGAAGCCAG +
Preference number: 4 (lower is better)
Translates to: DMGDVPANGDVPASGNVPSFIFL*FFQGSQ
Trigger: CTGGCTTCCTTGGAAAAATCACAAAAAGATGAAGGA...TGGAACATTACCACTGGCTGGAACATCACCATTGGCTGGAACATCACCCATGTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000211094.2
3UTR CAA 72 bp GCATGGGAAAGGGTAAATCATGCATGTGGCACTCACTaGTGTCATGGGAATACCTTAATGCAAAGTCACAGA +
Preference number: 4 (lower is better)
Translates to: AWERVNHACGTH*CHGNTLMQSHR
Trigger: TCTGTGACTTTGCATTAAGGTATTCCCATGACACAAGTGAGTGCCACATGCATGATTTACCCTTTCCCATGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211094.2
CDS GCA 90 bp CAGCAGTTCAAGATCTGGGTTTCGTCTTTCTGGAGGCGGCCGGTCTaGAAGCTCCTTCCTACGGCTCTGGTCGGAGAGGAAGCGGCGGCC +
Preference number: 5 (lower is better)
Translates to: QQFKIWVSSFWRRPV*KLLPTALVGEEAAA
Trigger: GGCCGCCGCTTCCTCTCCGACCAGAGCCGTAGGAAGGAGCTTGCAGACCGGCCGCCTCCAGAAAGACGAAACCCAGATCTTGAACTGCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126521.9
ENSMUST00000211094.2
CDS CCA 90 bp AGCCTCTGGGAGAGTCAGCAGTTCAAGATCTGGGTTTCGTCTTTCTaGAGGCGGCCGGTCTGCAAGCTCCTTCCTACGGCTCTGGTCGGA +
Preference number: 5 (lower is better)
Translates to: SLWESQQFKIWVSSF*RRPVCKLLPTALVG
Trigger: TCCGACCAGAGCCGTAGGAAGGAGCTTGCAGACCGGCCGCCTCCAGAAAGACGAAACCCAGATCTTGAACTGCTGACTCTCCCAGAGGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126521.9
ENSMUST00000211094.2
CDS CCA 90 bp GAGCATAGCTTGGGGAGTCCAGTTCCTCTTCTCAGAGAGTCGCTGTaGAGCACCGCTGGAGTTTTCCAGCGCAGACAGCACCAGGAGAAG +
Preference number: 5 (lower is better)
Translates to: EHSLGSPVPLLRESL*STAGVFQRRQHQEK
Trigger: CTTCTCCTGGTGCTGTCTGCGCTGGAAAACTCCAGCGGTGCTCCACAGCGACTCTCTGAGAAGAGGAACTGGACTCCCCAAGCTATGCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000126521.9
ENSMUST00000211094.2
CDS CCA 90 bp CAGAAACAGGGCTGCAGCCTCTGGGAGAGTCAGCAGTTCAAGATCTaGGTTTCGTCTTTCTGGAGGCGGCCGGTCTGCAAGCTCCTTCCT +
Preference number: 5 (lower is better)
Translates to: QKQGCSLWESQQFKI*VSSFWRRPVCKLLP
Trigger: AGGAAGGAGCTTGCAGACCGGCCGCCTCCAGAAAGACGAAACCCAGATCTTGAACTGCTGACTCTCCCAGAGGCTGCAGCCCTGTTTCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126521.9
ENSMUST00000211094.2
CDS-3UTR CAA 90 bp TCACTGTGTGCGTGTGCATGTGCCTGTGCATGTGTGTGCATGGGAAAGGGTAAACAGATAGAGCATAGCTaGGGGAGTCCAGTTCCTCTT +
Preference number: 5 (lower is better)
Translates to: SLCACACACACVCMGKGKQIEHS*GSPVPL
Trigger: AAGAGGAACTGGACTCCCCAAGCTATGCTCTATCTG...TTTACCCTTTCCCATGCACACACATGCACAGGCACATGCACACGCACACAGTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211094.2
CDS CCA 72 bp GGAGGCGGCCGGTCTGCAAGCTCCTTCCTACGGCTCTaGTCGGAGAGGAAGCGGCGGCCCTGTGCACCCTTC +
Preference number: 6 (lower is better)
Translates to: GGGRSASSFLRL*SERKRRPCAPF
Trigger: GAAGGGTGCACAGGGCCGCCGCTTCCTCTCCGACCAGAGCCGTAGGAAGGAGCTTGCAGACCGGCCGCCTCC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126521.9
ENSMUST00000211094.2
CDS CAA 90 bp GGAGAGGAAGCGGCGGCCCTGTGCACCCTTCAGATAGAGCATAGCTaGGGGAGTCCAGTTCCTCTTCTCAGAGAGTCGCTGTGGAGCACC +
Preference number: 6 (lower is better)
Translates to: GEEAAALCTLQIEHS*GSPVPLLRESLWST
Trigger: GGTGCTCCACAGCGACTCTCTGAGAAGAGGAACTGGACTCCCCAAGCTATGCTCTATCTGAAGGGTGCACAGGGCCGCCGCTTCCTCTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126521.9
ENSMUST00000211094.2
CDS CCA 72 bp GGCTGCAGCCTCTGGGAGAGTCAGCAGTTCAAGATCTaGGTTTCGTCTTTCTGGAGGCGGCCGGTCTGCAAG +
Preference number: 6 (lower is better)
Translates to: GCSLWESQQFKI*VSSFWRRPVCK
Trigger: CTTGCAGACCGGCCGCCTCCAGAAAGACGAAACCCAGATCTTGAACTGCTGACTCTCCCAGAGGCTGCAGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126521.9
ENSMUST00000211094.2
CDS CAA 72 bp GCGGCGGCCCTGTGCACCCTTCAGATAGAGCATAGCTaGGGGAGTCCAGTTCCTCTTCTCAGAGAGTCGCTG +
Preference number: 6 (lower is better)
Translates to: AAALCTLQIEHS*GSPVPLLRESL
Trigger: CAGCGACTCTCTGAGAAGAGGAACTGGACTCCCCAAGCTATGCTCTATCTGAAGGGTGCACAGGGCCGCCGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126521.9
ENSMUST00000211094.2
CDS GCA 72 bp AAGATCTGGGTTTCGTCTTTCTGGAGGCGGCCGGTCTaGAAGCTCCTTCCTACGGCTCTGGTCGGAGAGGAA +
Preference number: 6 (lower is better)
Translates to: KIWVSSFWRRPV*KLLPTALVGEE
Trigger: TTCCTCTCCGACCAGAGCCGTAGGAAGGAGCTTGCAGACCGGCCGCCTCCAGAAAGACGAAACCCAGATCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126521.9
ENSMUST00000211094.2
CDS CCA 72 bp TTGGGGAGTCCAGTTCCTCTTCTCAGAGAGTCGCTGTaGAGCACCGCTGGAGTTTTCCAGCGCAGACAGCAC +
Preference number: 6 (lower is better)
Translates to: LGSPVPLLRESL*STAGVFQRRQH
Trigger: GTGCTGTCTGCGCTGGAAAACTCCAGCGGTGCTCCACAGCGACTCTCTGAGAAGAGGAACTGGACTCCCCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000126521.9
ENSMUST00000211094.2
CDS CCA 72 bp TTTTTCCAAGGAAGCCAGAAACAGGGCTGCAGCCTCTaGGAGAGTCAGCAGTTCAAGATCTGGGTTTCGTCT +
Preference number: 6 (lower is better)
Translates to: FFQGSQKQGCSL*ESQQFKIWVSS
Trigger: AGACGAAACCCAGATCTTGAACTGCTGACTCTCCCAGAGGCTGCAGCCCTGTTTCTGGCTTCCTTGGAAAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000126521.9
ENSMUST00000211094.2