Pregenerated sensors for SPTSSB (Mus musculus)
Ensembl gene IDs: ENSMUSG00000043461Ensembl transcript IDs: ENSMUST00000051239.13, ENSMUST00000171529.4
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TGGGGGAAAACCTATCTCATACTCCAGGCAGGATGTGCGGGACAGTaGATAGAGAGAGTGCTGGTCAGGTCAGAGGTGAAAGATGATACG | + |
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Preference number: 1 (lower is better) Translates to: WGKTYLILQAGCAGQ*IERVLVRSEVKDDT Trigger: CGTATCATCTTTCACCTCTGACCTGACCAGCACTCTCTCTATGCACTGTCCCGCACATCCTGCCTGGAGTATGAGATAGGTTTTCCCCCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000051239.13 ENSMUST00000171529.4 |
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| 3UTR CCA 90 bp | TTTGTTTCTGCTGTGCAAAGGAGCTGCTATATCAAAGCCTTTAACTaGAGCTCCCGACTCCCTGCTGCCTGGCTATTACTTCCAGCCTAT | + |
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Preference number: 1 (lower is better) Translates to: FVSAVQRSCYIKAFN*SSRLPAAWLLLPAY Trigger: ATAGGCTGGAAGTAATAGCCAGGCAGCAGGGAGTCGGGAGCTCCAGTTAAAGGCTTTGATATAGCAGCTCCTTTGCACAGCAGAAACAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051239.13 |
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| 3UTR-3UTR TCA 90 bp | GAAAACCTATCTCATACTCCAGGCAGGATGTGCGGGACAGTGCATAGAGAGAGTTGGTCAGGTCAGAGGTaGAAGATGATACGGTCACCC | + |
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Preference number: 2 (lower is better) Translates to: ENLSHTPGRMCGTVHRESWSGQR*KMIRSP Trigger: GGGTGACCGTATCATCTTTCACCTCTGACCTGACCA...ACTCTCTCTATGCACTGTCCCGCACATCCTGCCTGGAGTATGAGATAGGTTTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000051239.13 ENSMUST00000171529.4 |
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| 3UTR-3UTR TCA 90 bp | GATTTCTCTCCTAAAACAAAGGTGCCAATATTGTCCAAAGCCGGTTCATTTATTTGGTCAGGTCAGAGGTaGAAGATGATACGGTCACCC | + |
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Preference number: 2 (lower is better) Translates to: DFSPKTKVPILSKAGSFIWSGQR*KMIRSP Trigger: GGGTGACCGTATCATCTTTCACCTCTGACCTGACCA...AATAAATGAACCGGCTTTGGACAATATTGGCACCTTTGTTTTAGGAGAGAAATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051239.13 |
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| 3UTR-3UTR GCA 90 bp | GATTTCTCTCCTAAAACAAAGGTGCCAATATTGTCCAAAGCCGGTTCATTTATTGCTGTGCAAAGGAGCTaGTATATCAAAGCCTTTAAC | + |
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Preference number: 2 (lower is better) Translates to: DFSPKTKVPILSKAGSFIAVQRS*YIKAFN Trigger: GTTAAAGGCTTTGATATAGCAGCTCCTTTGCACAGC...AATAAATGAACCGGCTTTGGACAATATTGGCACCTTTGTTTTAGGAGAGAAATC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051239.13 |
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| 3UTR GCA 72 bp | ACCTATCTCATACTCCAGGCAGGATGTGCGGGACAGTaGATAGAGAGAGTGCTGGTCAGGTCAGAGGTGAAA | + |
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Preference number: 3 (lower is better) Translates to: TYLILQAGCAGQ*IERVLVRSEVK Trigger: TTTCACCTCTGACCTGACCAGCACTCTCTCTATGCACTGTCCCGCACATCCTGCCTGGAGTATGAGATAGGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051239.13 ENSMUST00000171529.4 |
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| 3UTR CCA 72 bp | GCTGTGCAAAGGAGCTGCTATATCAAAGCCTTTAACTaGAGCTCCCGACTCCCTGCTGCCTGGCTATTACTT | + |
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Preference number: 3 (lower is better) Translates to: AVQRSCYIKAFN*SSRLPAAWLLL Trigger: AAGTAATAGCCAGGCAGCAGGGAGTCGGGAGCTCCAGTTAAAGGCTTTGATATAGCAGCTCCTTTGCACAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051239.13 |
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| 3UTR-3UTR CAA 90 bp | TGGAGCTCCCGACTCCCTGCTGCCTGGCTATTACTTCCAGCCTATTTATTAGCTAAGTTCAGGGTACTTTaGACAGTAGCCTATGAAGAA | + |
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Preference number: 3 (lower is better) Translates to: WSSRLPAAWLLLPAYLLAKFRVL*TVAYEE Trigger: TTCTTCATAGGCTACTGTCAAAAGTACCCTGAACTT...AGCTAATAAATAGGCTGGAAGTAATAGCCAGGCAGCAGGGAGTCGGGAGCTCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051239.13 |
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| 3UTR-3UTR CAA 90 bp | GATTTCTCTCCTAAAACAAAGGTGCCAATATTGTCCAAAGCCGGTTCATTTATTTGCAAGGCTTGGTCTTaGGCTTTTATGTTTGACTCA | + |
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Preference number: 3 (lower is better) Translates to: DFSPKTKVPILSKAGSFICKAWS*AFMFDS Trigger: TGAGTCAAACATAAAAGCCAAAGACCAAGCCTTGCA...AATAAATGAACCGGCTTTGGACAATATTGGCACCTTTGTTTTAGGAGAGAAATC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051239.13 |
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| 3UTR GCA 72 bp | AATTTAATAAATTTTGTTTCTGCTGTGCAAAGGAGCTaGTATATCAAAGCCTTTAACTGGAGCTCCCGACTC | + |
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Preference number: 3 (lower is better) Translates to: NLINFVSAVQRS*YIKAFNWSSRL Trigger: GAGTCGGGAGCTCCAGTTAAAGGCTTTGATATAGCAGCTCCTTTGCACAGCAGAAACAAAATTTATTAAATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051239.13 |
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| CDS-3UTR TCA 90 bp | TGGAGCTCCCGACTCCCTGCTGCCTGGCTATTACTTCCAGCCTATTTATTAGCTGGATGTGGATGGGGATaGAGACATAGGCAGTGTATA | + |
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Preference number: 4 (lower is better) Translates to: WSSRLPAAWLLLPAYLLAGCGWG*RHRQCI Trigger: TATACACTGCCTATGTCTTCATCCCCATCCACATCC...AGCTAATAAATAGGCTGGAAGTAATAGCCAGGCAGCAGGGAGTCGGGAGCTCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051239.13 |
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| CDS-3UTR TCA 90 bp | TGCATAGAGAGAGTGCTGGTCAGGTCAGAGGTGAAAGATGATACGGTCACCCAAGGATGTGGATGGGGATaGAGACATAGGCAGTGTATA | + |
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Preference number: 4 (lower is better) Translates to: CIERVLVRSEVKDDTVTQGCGWG*RHRQCI Trigger: TATACACTGCCTATGTCTTCATCCCCATCCACATCC...TTGGGTGACCGTATCATCTTTCACCTCTGACCTGACCAGCACTCTCTCTATGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000051239.13 ENSMUST00000171529.4 |
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| CDS-3UTR CAA 90 bp | GAAAACCTATCTCATACTCCAGGCAGGATGTGCGGGACAGTGCATAGAGAGAGTGGTGATGATCTGGTATaGATAATAGAGCCAGGCAAA | + |
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Preference number: 5 (lower is better) Translates to: ENLSHTPGRMCGTVHRESGDDLV*IIEPGK Trigger: TTTGCCTGGCTCTATTATCAATACCAGATCATCACC...ACTCTCTCTATGCACTGTCCCGCACATCCTGCCTGGAGTATGAGATAGGTTTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000051239.13 ENSMUST00000171529.4 |
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| CDS-3UTR CAA 90 bp | AGAGTGCTGGTCAGGTCAGAGGTGAAAGATGATACGGTCACCCAAGTCAGTAAGGGTGATGATCTGGTATaGATAATAGAGCCAGGCAAA | + |
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Preference number: 5 (lower is better) Translates to: RVLVRSEVKDDTVTQVSKGDDLV*IIEPGK Trigger: TTTGCCTGGCTCTATTATCAATACCAGATCATCACC...CTTACTGACTTGGGTGACCGTATCATCTTTCACCTCTGACCTGACCAGCACTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051239.13 ENSMUST00000171529.4 |
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| CDS CAA 72 bp | AGGCTCCATGACAGCACAGCAGGTGATGATCTGGTATaGATAATAGAGCCAGGCAAAATACTCCTTCACGCG | + |
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Preference number: 6 (lower is better) Translates to: RLHDSTAGDDLV*IIEPGKILLHA Trigger: CGCGTGAAGGAGTATTTTGCCTGGCTCTATTATCAATACCAGATCATCACCTGCTGTGCTGTCATGGAGCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000051239.13 ENSMUST00000171529.4 |
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| CDS CAA 90 bp | TTGTTCCCAAGGCTCCATGACAGCACAGCAGGTGATGATCTGGTATaGATAATAGAGCCAGGCAAAATACTCCTTCACGCGCTTGAAATC | + |
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Preference number: 6 (lower is better) Translates to: LFPRLHDSTAGDDLV*IIEPGKILLHALEI Trigger: GATTTCAAGCGCGTGAAGGAGTATTTTGCCTGGCTCTATTATCAATACCAGATCATCACCTGCTGTGCTGTCATGGAGCCTTGGGAACAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000051239.13 ENSMUST00000171529.4 |
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