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Pregenerated sensors for SPTSSA (Mus musculus)

Ensembl gene IDs: ENSMUSG00000044408

Ensembl transcript IDs: ENSMUST00000056228.8, ENSMUST00000218147.2

Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GTTATGGTTCTGCACAATTCATCTCATTGTGTCTTTATCACAACGTaGAAATGCATTTCACAACGCCTGTTACAACATCAAATTAACTCT +
Preference number: 1 (lower is better)
Translates to: VMVLHNSSHCVFITT*KCISQRLLQHQINS
Trigger: AGAGTTAATTTGATGTTGTAACAGGCGTTGTGAAATGCATTTGCACGTTGTGATAAAGACACAATGAGATGAATTGTGCAGAACCATAAC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056228.8
ENSMUST00000218147.2
3UTR-3UTR CCA 90 bp CCAACTTCACAAGGCAGATCTTCCCCAGGAACCTCTGGATCCTGGTCACATCTTTTCCCCAGGAACCTCTaGATCCTGGTCACATCTTCG +
Preference number: 2 (lower is better)
Translates to: PTSQGRSSPGTSGSWSHLFPRNL*ILVTSS
Trigger: CGAAGATGTGACCAGGATCCAGAGGTTCCTGGGGAA...AAGATGTGACCAGGATCCAGAGGTTCCTGGGGAAGATCTGCCTTGTGAAGTTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000056228.8
ENSMUST00000218147.2
3UTR-3UTR CCA 90 bp CCAATCACCAATCACAGGAATCATCAAAGTTGGTTGGAAATAAGTCCACATAAGTTCCCCAGGAACCTCTaGATCCTGGTCACATCTTCG +
Preference number: 2 (lower is better)
Translates to: PITNHRNHQSWLEISPHKFPRNL*ILVTSS
Trigger: CGAAGATGTGACCAGGATCCAGAGGTTCCTGGGGAA...CTTATGTGGACTTATTTCCAACCAACTTTGATGATTCCTGTGATTGGTGATTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056228.8
ENSMUST00000218147.2
3UTR-3UTR TCA 90 bp CATACAAGCCGGCCACCAATCACCAATCACAGGAATCATCAAAGTTGGTTGGAAAAAGAACACAACACATaGGCCAGGATGATTTTTCCT +
Preference number: 2 (lower is better)
Translates to: HTSRPPITNHRNHQSWLEKEHNT*ARMIFP
Trigger: AGGAAAAATCATCCTGGCTCATGTGTTGTGTTCTTT...TTCCAACCAACTTTGATGATTCCTGTGATTGGTGATTGGTGGCCGGCTTGTATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000056228.8
3UTR-3UTR TCA 90 bp AAGCAAGCAGATAAATCTTTTGTAAGTAGTTCTCAAAGTATCCTCCCTCCCGTCACACATGAGCCAGGATaGTTTTTCCTGTTCTACTCA +
Preference number: 2 (lower is better)
Translates to: KQADKSFVSSSQSILPPVTHEPG*FFLFYS
Trigger: TGAGTAGAACAGGAAAAATCATCCTGGCTCATGTGT...GACGGGAGGGAGGATACTTTGAGAACTACTTACAAAAGATTTATCTGCTTGCTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000056228.8
3UTR-3UTR TCA 90 bp CAACGTGCAAATGCATTTCACAACGCCTGTTACAACATCAAATTAACTCTTGAGCTGATAAGCCTTCTATaGAAAGCTCCACAGTGTATC +
Preference number: 2 (lower is better)
Translates to: QRANAFHNACYNIKLTLELISLL*KAPQCI
Trigger: GATACACTGTGGAGCTTTTCATAGAAGGCTTATCAG...CTCAAGAGTTAATTTGATGTTGTAACAGGCGTTGTGAAATGCATTTGCACGTTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056228.8
ENSMUST00000218147.2
3UTR-3UTR CCA 90 bp CAACGTGCAAATGCATTTCACAACGCCTGTTACAACATCAAATTAACTCTTGAGAGGAATCATCAAAGTTaGTTGGAAATAAGTCCACAT +
Preference number: 2 (lower is better)
Translates to: QRANAFHNACYNIKLTLERNHQS*LEISPH
Trigger: ATGTGGACTTATTTCCAACCAACTTTGATGATTCCT...CTCAAGAGTTAATTTGATGTTGTAACAGGCGTTGTGAAATGCATTTGCACGTTG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056228.8
ENSMUST00000218147.2
3UTR CCA 72 bp TCCAACTTCACAAGGCAGATCTTCCCCAGGAACCTCTaGATCCTGGTCACATCTTCGTCACTGTACAATTTC +
Preference number: 3 (lower is better)
Translates to: SNFTRQIFPRNL*ILVTSSSLYNF
Trigger: GAAATTGTACAGTGACGAAGATGTGACCAGGATCCAGAGGTTCCTGGGGAAGATCTGCCTTGTGAAGTTGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218147.2
3UTR GCA 72 bp ATCAAATTAACTCTTGAGCGTATACAGGGTCAATACTaGCTCAGAGGATCTGATAAGCCTTCTATGAAAAGC +
Preference number: 3 (lower is better)
Translates to: IKLTLERIQGQY*LRGSDKPSMKS
Trigger: GCTTTTCATAGAAGGCTTATCAGATCCTCTGAGGCAGTATTGACCCTGTATACGCTCAAGAGTTAATTTGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056228.8
ENSMUST00000218147.2
3UTR GCA 72 bp CTGCACAATTCATCTCATTGTGTCTTTATCACAACGTaGAAATGCATTTCACAACGCCTGTTACAACATCAA +
Preference number: 3 (lower is better)
Translates to: LHNSSHCVFITT*KCISQRLLQHQ
Trigger: TTGATGTTGTAACAGGCGTTGTGAAATGCATTTGCACGTTGTGATAAAGACACAATGAGATGAATTGTGCAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056228.8
ENSMUST00000218147.2
CDS-3UTR TCA 90 bp CCAACTTCACAAGGCAGATCTTCCCCAGGAACCTCTGGATCCTGGTCACATCTTGCATGTAGAGCGCAGTaGCCAGCAGGTACTGGTAGT +
Preference number: 4 (lower is better)
Translates to: PTSQGRSSPGTSGSWSHLACRAQ*PAGTGS
Trigger: ACTACCAGTACCTGCTGGTCACTGCGCTCTACATGC...AAGATGTGACCAGGATCCAGAGGTTCCTGGGGAAGATCTGCCTTGTGAAGTTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056228.8
ENSMUST00000218147.2
CDS-3UTR GCA 90 bp CATACAAGCCGGCCACCAATCACCAATCACAGGAATCATCAAAGTTGGTTGGAACATCAAGACAGGAGATaGAGGCAGGAGACTCCCAAG +
Preference number: 4 (lower is better)
Translates to: HTSRPPITNHRNHQSWLEHQDRR*RQETPK
Trigger: CTTGGGAGTCTCCTGCCTGCATCTCCTGTCTTGATG...TTCCAACCAACTTTGATGATTCCTGTGATTGGTGATTGGTGGCCGGCTTGTATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218147.2
CDS-3UTR TCA 90 bp TCTGCACAATTCATCTCATTGTGTCTTTATCACAACGTGCAAATGCATTTCACAGCATGTAGAGCGCAGTaGCCAGCAGGTACTGGTAGT +
Preference number: 4 (lower is better)
Translates to: SAQFISLCLYHNVQMHFTACRAQ*PAGTGS
Trigger: ACTACCAGTACCTGCTGGTCACTGCGCTCTACATGC...TGTGAAATGCATTTGCACGTTGTGATAAAGACACAATGAGATGAATTGTGCAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056228.8
ENSMUST00000218147.2
CDS-3UTR GCA 90 bp TCTGCACAATTCATCTCATTGTGTCTTTATCACAACGTGCAAATGCATTTCACAGACTCCCAAGAGGCCTaGAGGCCAGTAAGCAGGATA +
Preference number: 4 (lower is better)
Translates to: SAQFISLCLYHNVQMHFTDSQEA*RPVSRI
Trigger: TATCCTGCTTACTGGCCTGCAGGCCTCTTGGGAGTC...TGTGAAATGCATTTGCACGTTGTGATAAAGACACAATGAGATGAATTGTGCAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218147.2
CDS GCA 90 bp ACTCCATCAAGACAGGAGATGCAGGCAGGAGACTCCCAAGAGGCCTaGAGGCCAGTAAGCAGGATACTGAACACGGTTCGCTCCCAGGGC +
Preference number: 5 (lower is better)
Translates to: TPSRQEMQAGDSQEA*RPVSRILNTVRSQG
Trigger: GCCCTGGGAGCGAACCGTGTTCAGTATCCTGCTTACTGGCCTGCAGGCCTCTTGGGAGTCTCCTGCCTGCATCTCCTGTCTTGATGGAGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218147.2
CDS GCA 72 bp CAGGACTCACAGCTAGGACTCCATCAAGACAGGAGATaGAGGCAGGAGACTCCCAAGAGGCCTGCAGGCCAG +
Preference number: 6 (lower is better)
Translates to: QDSQLGLHQDRR*RQETPKRPAGQ
Trigger: CTGGCCTGCAGGCCTCTTGGGAGTCTCCTGCCTGCATCTCCTGTCTTGATGGAGTCCTAGCTGTGAGTCCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218147.2