Pregenerated sensors for SPTLC1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021468Ensembl transcript IDs: ENSMUST00000021920.8
Found 61 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GCTGTGTATTCAAGCACAGCCACACCCTGGGCAGCTGGAGGTCTCTaGGTAGTTCCGTCCGCAGGTGACATGGCTGAAGCACTGGGCAGG | + |
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Preference number: 1 (lower is better) Translates to: AVYSSTATPWAAGGL*VVPSAGDMAEALGR Trigger: CCTGCCCAGTGCTTCAGCCATGTCACCTGCGGACGGAACTACTCAGAGACCTCCAGCTGCCCAGGGTGTGGCTGTGCTTGAATACACAGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021920.8 |
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| 3UTR TCA 90 bp | ATGACGTTTATAACACACACAGAGTATCTGCATAGCAGCCACCACTaGGCTCTGCCTGAGGACAGGGGAGGACACAGTCTCTCAGTCTCC | + |
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Preference number: 1 (lower is better) Translates to: MTFITHTEYLHSSHH*ALPEDRGGHSLSVS Trigger: GGAGACTGAGAGACTGTGTCCTCCCCTGTCCTCAGGCAGAGCTCAGTGGTGGCTGCTATGCAGATACTCTGTGTGTGTTATAAACGTCAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021920.8 |
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| 3UTR GCA 90 bp | CACCAGGGATATGCTGTCATCTGTCATCCTCTACAAGTCAGCTCCTaGTGGATACAACCATCCACTCTGGCTGTGTATTCAAGCACAGCC | + |
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Preference number: 1 (lower is better) Translates to: HQGYAVICHPLQVSS*WIQPSTLAVYSSTA Trigger: GGCTGTGCTTGAATACACAGCCAGAGTGGATGGTTGTATCCAGCAGGAGCTGACTTGTAGAGGATGACAGATGACAGCATATCCCTGGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021920.8 |
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| 3UTR CCA 90 bp | CAGGGATATGCTGTCATCTGTCATCCTCTACAAGTCAGCTCCTGCTaGATACAACCATCCACTCTGGCTGTGTATTCAAGCACAGCCACA | + |
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Preference number: 1 (lower is better) Translates to: QGYAVICHPLQVSSC*IQPSTLAVYSSTAT Trigger: TGTGGCTGTGCTTGAATACACAGCCAGAGTGGATGGTTGTATCCAGCAGGAGCTGACTTGTAGAGGATGACAGATGACAGCATATCCCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021920.8 |
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| 3UTR TCA 90 bp | CGACCCATGGTTCACATGAACGCACATCAGAAAATGACATTTAAATaGCCTGACTCCTCTGCCCGTGCAACAAGAGAAGGCCTTCCATGC | + |
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Preference number: 1 (lower is better) Translates to: RPMVHMNAHQKMTFK*PDSSARATREGLPC Trigger: GCATGGAAGGCCTTCTCTTGTTGCACGGGCAGAGGAGTCAGGTCATTTAAATGTCATTTTCTGATGTGCGTTCATGTGAACCATGGGTCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021920.8 |
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| 3UTR GCA 90 bp | GAGTCCCTCTTAGCTGCAAAGTCCTTTTCTATGGATACGGAGAAGTaGTTATTGAATCATTCCCACAGACGACAGAGGGAAAATGGAAGC | + |
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Preference number: 1 (lower is better) Translates to: ESLLAAKSFSMDTEK*LLNHSHRRQRENGS Trigger: GCTTCCATTTTCCCTCTGTCGTCTGTGGGAATGATTCAATAAGCACTTCTCCGTATCCATAGAAAAGGACTTTGCAGCTAAGAGGGACTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021920.8 |
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| 3UTR-3UTR TCA 90 bp | CTCTGCCCGTGCAACAAGAGAAGGCCTTCCATGCACACGATCCGTGGCACATGTCATAGCAGCCACCACTaGGCTCTGCCTGAGGACAGG | + |
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Preference number: 2 (lower is better) Translates to: LCPCNKRRPSMHTIRGTCHSSHH*ALPEDR Trigger: CCTGTCCTCAGGCAGAGCTCAGTGGTGGCTGCTATG...ACATGTGCCACGGATCGTGTGCATGGAAGGCCTTCTCTTGTTGCACGGGCAGAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021920.8 |
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| 3UTR-3UTR GCA 90 bp | CTGACTCCTCTGCCCGTGCAACAAGAGAAGGCCTTCCATGCACACGATCCGTGGCTACAAGTCAGCTCCTaGTGGATACAACCATCCACT | + |
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Preference number: 2 (lower is better) Translates to: LTPLPVQQEKAFHAHDPWLQVSS*WIQPST Trigger: AGTGGATGGTTGTATCCAGCAGGAGCTGACTTGTAG...CCACGGATCGTGTGCATGGAAGGCCTTCTCTTGTTGCACGGGCAGAGGAGTCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021920.8 |
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| 3UTR-3UTR GCA 90 bp | CTCTGCCCGTGCAACAAGAGAAGGCCTTCCATGCACACGATCCGTGGCACATGTAAGCCCACAGGTCTATaGTCCTGGACAAAACCACCA | + |
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Preference number: 2 (lower is better) Translates to: LCPCNKRRPSMHTIRGTCKPTGL*SWTKPP Trigger: TGGTGGTTTTGTCCAGGAGCATAGACCTGTGGGCTT...ACATGTGCCACGGATCGTGTGCATGGAAGGCCTTCTCTTGTTGCACGGGCAGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021920.8 |
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| 3UTR-3UTR CCA 90 bp | CTCTGCCTGAGGACAGGGGAGGACACAGTCTCTCAGTCTCCCACAGTAACTGGACAAGTCAGCTCCTGCTaGATACAACCATCCACTCTG | + |
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Preference number: 2 (lower is better) Translates to: LCLRTGEDTVSQSPTVTGQVSSC*IQPSTL Trigger: CAGAGTGGATGGTTGTATCCAGCAGGAGCTGACTTG...TCCAGTTACTGTGGGAGACTGAGAGACTGTGTCCTCCCCTGTCCTCAGGCAGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021920.8 |
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| 3UTR-3UTR TCA 90 bp | GACAGGAGTGTACCCTCACAGCAGCAGCAATCACAAGGCACGTATGAAATAGAAGCAGCTGGAGGTCTCTaGGTAGTTCCGTCCGCAGGT | + |
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Preference number: 2 (lower is better) Translates to: DRSVPSQQQQSQGTYEIEAAGGL*VVPSAG Trigger: ACCTGCGGACGGAACTACTCAGAGACCTCCAGCTGC...TTCTATTTCATACGTGCCTTGTGATTGCTGCTGCTGTGAGGGTACACTCCTGTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021920.8 |
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| 3UTR-3UTR TCA 90 bp | CTCTGCCCGTGCAACAAGAGAAGGCCTTCCATGCACACGATCCGTGGCACATGTAAAATACCAAGGGCATaGTTTGTATTTGGGGATCAG | + |
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Preference number: 2 (lower is better) Translates to: LCPCNKRRPSMHTIRGTCKIPRA*FVFGDQ Trigger: CTGATCCCCAAATACAAATCATGCCCTTGGTATTTT...ACATGTGCCACGGATCGTGTGCATGGAAGGCCTTCTCTTGTTGCACGGGCAGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021920.8 |
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| 3UTR-3UTR CCA 90 bp | CATGATTTGTATTTGGGGATCAGAATAATAACCCTCTTCCCAAAACTGACTAGAGTCTCCCACAGTAACTaGATACATGGAGAGTCCCTC | + |
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Preference number: 2 (lower is better) Translates to: HDLYLGIRIITLFPKLTRVSHSN*IHGESL Trigger: GAGGGACTCTCCATGTATCCAGTTACTGTGGGAGAC...TCTAGTCAGTTTTGGGAAGAGGGTTATTATTCTGATCCCCAAATACAAATCATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021920.8 |
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| 3UTR TCA 72 bp | TCAAGCACAGCCACACCCTGGGCAGCTGGAGGTCTCTaGGTAGTTCCGTCCGCAGGTGACATGGCTGAAGCA | + |
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Preference number: 3 (lower is better) Translates to: SSTATPWAAGGL*VVPSAGDMAEA Trigger: TGCTTCAGCCATGTCACCTGCGGACGGAACTACTCAGAGACCTCCAGCTGCCCAGGGTGTGGCTGTGCTTGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021920.8 |
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| 3UTR TCA 72 bp | ATAACACACACAGAGTATCTGCATAGCAGCCACCACTaGGCTCTGCCTGAGGACAGGGGAGGACACAGTCTC | + |
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Preference number: 3 (lower is better) Translates to: ITHTEYLHSSHH*ALPEDRGGHSL Trigger: GAGACTGTGTCCTCCCCTGTCCTCAGGCAGAGCTCAGTGGTGGCTGCTATGCAGATACTCTGTGTGTGTTAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021920.8 |
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| 3UTR CCA 72 bp | TACAAGTCAGCTCCTGCTGGATACAACCATCCACTCTaGCTGTGTATTCAAGCACAGCCACACCCTGGGCAG | + |
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Preference number: 3 (lower is better) Translates to: YKSAPAGYNHPL*LCIQAQPHPGQ Trigger: CTGCCCAGGGTGTGGCTGTGCTTGAATACACAGCCAGAGTGGATGGTTGTATCCAGCAGGAGCTGACTTGTA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021920.8 |
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| 3UTR CCA 72 bp | GTGCAACAAGAGAAGGCCTTCCATGCACACGATCCGTaGCACATGTCACAAGCCTTTATATCACTCAACACG | + |
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Preference number: 3 (lower is better) Translates to: VQQEKAFHAHDP*HMSQAFISLNT Trigger: CGTGTTGAGTGATATAAAGGCTTGTGACATGTGCCACGGATCGTGTGCATGGAAGGCCTTCTCTTGTTGCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021920.8 |
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| 3UTR-3UTR CAA 90 bp | GTCTCCCACAGTAACTGGATACATGGAGAGTCCCTCTTAGCTGCAAAGTCCTTTACGGAGAAGTGCTTATaGAATCATTCCCACAGACGA | + |
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Preference number: 3 (lower is better) Translates to: VSHSNWIHGESLLAAKSFTEKCL*NHSHRR Trigger: TCGTCTGTGGGAATGATTCAATAAGCACTTCTCCGT...AAAGGACTTTGCAGCTAAGAGGGACTCTCCATGTATCCAGTTACTGTGGGAGAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021920.8 |
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| 3UTR TCA 72 bp | GTTCACATGAACGCACATCAGAAAATGACATTTAAATaGCCTGACTCCTCTGCCCGTGCAACAAGAGAAGGC | + |
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Preference number: 3 (lower is better) Translates to: VHMNAHQKMTFK*PDSSARATREG Trigger: GCCTTCTCTTGTTGCACGGGCAGAGGAGTCAGGTCATTTAAATGTCATTTTCTGATGTGCGTTCATGTGAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021920.8 |
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| 3UTR TCA 72 bp | CAAAGTCCTTTTCTATGGATACGGAGAAGTGCTTATTaGATCATTCCCACAGACGACAGAGGGAAAATGGAA | + |
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Preference number: 3 (lower is better) Translates to: QSPFLWIRRSAY*IIPTDDRGKME Trigger: TTCCATTTTCCCTCTGTCGTCTGTGGGAATGATTCAATAAGCACTTCTCCGTATCCATAGAAAAGGACTTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021920.8 |
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| 3UTR TCA 72 bp | TGTACCCTCACAGCAGCAGCAATCACAAGGCACGTATaGAATAGAAACATTAAAAATGTCACAGATCACTTA | + |
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Preference number: 3 (lower is better) Translates to: CTLTAAAITRHV*NRNIKNVTDHL Trigger: TAAGTGATCTGTGACATTTTTAATGTTTCTATTTCATACGTGCCTTGTGATTGCTGCTGCTGTGAGGGTACA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021920.8 |
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| 3UTR GCA 72 bp | AGAAACATTAAAAATGTCACAGATCACTTAAGAAGATaGCGACCCATGGTTCACATGAACGCACATCAGAAA | + |
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Preference number: 3 (lower is better) Translates to: RNIKNVTDHLRR*RPMVHMNAHQK Trigger: TTTCTGATGTGCGTTCATGTGAACCATGGGTCGGCATCTTCTTAAGTGATCTGTGACATTTTTAATGTTTCT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021920.8 |
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| CDS-3UTR TCA 90 bp | GTATTCAAGCACAGCCACACCCTGGGCAGCTGGAGGTCTCTGAGTAGTTCCGTCCCTGGGCCGCCTCCCTaGTGGTGGATGCAGCCCTCT | + |
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Preference number: 4 (lower is better) Translates to: VFKHSHTLGSWRSLSSSVPGPPP*WWMQPS Trigger: AGAGGGCTGCATCCACCATCAGGGAGGCGGCCCAGG...GACGGAACTACTCAGAGACCTCCAGCTGCCCAGGGTGTGGCTGTGCTTGAATAC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021920.8 |
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| CDS-3UTR GCA 90 bp | CTGACTCCTCTGCCCGTGCAACAAGAGAAGGCCTTCCATGCACACGATCCGTGGAGCTCTTCCTCCGTCTaGTCCACAGTGACCACAACC | + |
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Preference number: 4 (lower is better) Translates to: LTPLPVQQEKAFHAHDPWSSSSV*STVTTT Trigger: GGTTGTGGTCACTGTGGAGCAGACGGAGGAAGAGCT...CCACGGATCGTGTGCATGGAAGGCCTTCTCTTGTTGCACGGGCAGAGGAGTCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021920.8 |
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| CDS-3UTR CCA 90 bp | CTGACTCCTCTGCCCGTGCAACAAGAGAAGGCCTTCCATGCACACGATCCGTGGCACAACCCTGATGCTTaGAGGAGGAAGGCACTTCTC | + |
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Preference number: 4 (lower is better) Translates to: LTPLPVQQEKAFHAHDPWHNPDA*RRKALL Trigger: GAGAAGTGCCTTCCTCCTCCAAGCATCAGGGTTGTG...CCACGGATCGTGTGCATGGAAGGCCTTCTCTTGTTGCACGGGCAGAGGAGTCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021920.8 |
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| CDS-3UTR GCA 90 bp | CTGACTCCTCTGCCCGTGCAACAAGAGAAGGCCTTCCATGCACACGATCCGTGGCCCGACAGAAGCGAGTaGATTCTCCATGTTAGCACT | + |
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Preference number: 4 (lower is better) Translates to: LTPLPVQQEKAFHAHDPWPDRSE*ILHVST Trigger: AGTGCTAACATGGAGAATGCACTCGCTTCTGTCGGG...CCACGGATCGTGTGCATGGAAGGCCTTCTCTTGTTGCACGGGCAGAGGAGTCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021920.8 |
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| CDS-3UTR TCA 90 bp | TGCACACGATCCGTGGCACATGTCACAAGCCTTTATATCACTCAACACGCTCGCTCTTCCAGCTGGAGATaGAGCGCCGGAGAAAGGGAC | + |
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Preference number: 4 (lower is better) Translates to: CTRSVAHVTSLYITQHARSSSWR*SAGERD Trigger: GTCCCTTTCTCCGGCGCTTCATCTCCAGCTGGAAGA...GCGAGCGTGTTGAGTGATATAAAGGCTTGTGACATGTGCCACGGATCGTGTGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021920.8 |
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| CDS-3UTR CCA 90 bp | CTGACTCCTCTGCCCGTGCAACAAGAGAAGGCCTTCCATGCACACGATCCGTGGTGGCACTGGCTATGGTaGAGAAGCCATACGAGTAAA | + |
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Preference number: 4 (lower is better) Translates to: LTPLPVQQEKAFHAHDPWWHWLW*RSHTSK Trigger: TTTACTCGTATGGCTTCTCCACCATAGCCAGTGCCA...CCACGGATCGTGTGCATGGAAGGCCTTCTCTTGTTGCACGGGCAGAGGAGTCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021920.8 |
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| CDS-3UTR CCA 90 bp | GGCTGTGTATTCAAGCACAGCCACACCCTGGGCAGCTGGAGGTCTCTGAGTAGTCTGGAAGGGGACAGATaGTTCCAGTGTTCATGTACA | + |
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Preference number: 4 (lower is better) Translates to: GCVFKHSHTLGSWRSLSSLEGDR*FQCSCT Trigger: TGTACATGAACACTGGAACCATCTGTCCCCTTCCAG...ACTACTCAGAGACCTCCAGCTGCCCAGGGTGTGGCTGTGCTTGAATACACAGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021920.8 |
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| CDS-3UTR CCA 90 bp | AAGAGAAGGCCTTCCATGCACACGATCCGTGGCACATGTCACAAGCCTTTATATCACGATGTTGTGGGTTaGAGGGCCGGACACGATGTT | + |
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Preference number: 4 (lower is better) Translates to: KRRPSMHTIRGTCHKPLYHDVVG*RAGHDV Trigger: AACATCGTGTCCGGCCCTCCAACCCACAACATCGTG...ATATAAAGGCTTGTGACATGTGCCACGGATCGTGTGCATGGAAGGCCTTCTCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021920.8 |
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| CDS-3UTR CCA 90 bp | GGCACTGCAGAAACACCAGGGATATGCTGTCATCTGTCATCCTCTACAAGTCAGGAATGGCACTGGCTATaGTGGAGAAGCCATACGAGT | + |
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Preference number: 4 (lower is better) Translates to: GTAETPGICCHLSSSTSQEWHWL*WRSHTS Trigger: ACTCGTATGGCTTCTCCACCATAGCCAGTGCCATTC...CTGACTTGTAGAGGATGACAGATGACAGCATATCCCTGGTGTTTCTGCAGTGCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021920.8 |
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| CDS-3UTR GCA 90 bp | CGGTATGAAGATCTGTTAGTGAAGCTCAGATTAGACAGGACAGTATCAGTAACTGTGACTCCTCGCCCGTaGTCCCCAAGGACTCCAAAG | + |
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Preference number: 4 (lower is better) Translates to: RYEDLLVKLRLDRTVSVTVTPRP*SPRTPK Trigger: CTTTGGAGTCCTTGGGGAGCACGGGCGAGGAGTCAC...AGTTACTGATACTGTCCTGTCTAATCTGAGCTTCACTAACAGATCTTCATACCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021920.8 |
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| CDS-3UTR CCA 90 bp | GACAGGAGTGTACCCTCACAGCAGCAGCAATCACAAGGCACGTATGAAATAGAAGCCTGTAATCCTTTCTaGATAGCAAAGCAGGCCGCA | + |
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Preference number: 4 (lower is better) Translates to: DRSVPSQQQQSQGTYEIEACNPF*IAKQAA Trigger: TGCGGCCTGCTTTGCTATCCAGAAAGGATTACAGGC...TTCTATTTCATACGTGCCTTGTGATTGCTGCTGCTGTGAGGGTACACTCCTGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021920.8 |
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| CDS-3UTR TCA 90 bp | GTCTCCCACAGTAACTGGATACATGGAGAGTCCCTCTTAGCTGCAAAGTCCTTTAGCCATACGAGTAAATaGTGGCTTCTTCGGTCTTCA | + |
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Preference number: 4 (lower is better) Translates to: VSHSNWIHGESLLAAKSFSHTSK*WLLRSS Trigger: TGAAGACCGAAGAAGCCATCATTTACTCGTATGGCT...AAAGGACTTTGCAGCTAAGAGGGACTCTCCATGTATCCAGTTACTGTGGGAGAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021920.8 |
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| CDS-3UTR CCA 90 bp | CGGTATGAAGATCTGTTAGTGAAGCTCAGATTAGACAGGACAGTATCAGTAACTACGCAGGAATGGCACTaGCTATGGTGGAGAAGCCAT | + |
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Preference number: 4 (lower is better) Translates to: RYEDLLVKLRLDRTVSVTTQEWH*LWWRSH Trigger: ATGGCTTCTCCACCATAGCCAGTGCCATTCCTGCGT...AGTTACTGATACTGTCCTGTCTAATCTGAGCTTCACTAACAGATCTTCATACCG 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021920.8 |
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| 3UTR CAA 72 bp | GCAAAGTCCTTTTCTATGGATACGGAGAAGTGCTTATaGAATCATTCCCACAGACGACAGAGGGAAAATGGA | + |
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Preference number: 4 (lower is better) Translates to: AKSFSMDTEKCL*NHSHRRQRENG Trigger: TCCATTTTCCCTCTGTCGTCTGTGGGAATGATTCAATAAGCACTTCTCCGTATCCATAGAAAAGGACTTTGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021920.8 |
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| CDS-3UTR GCA 90 bp | CATGATTTGTATTTGGGGATCAGAATAATAACCCTCTTCCCAAAACTGACTAGAGAGTCACACGGGCCTTaGGAGGATTCTTTTGATCTT | + |
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Preference number: 4 (lower is better) Translates to: HDLYLGIRIITLFPKLTRESHGP*EDSFDL Trigger: AAGATCAAAAGAATCCTCGCAAGGCCCGTGTGACTC...TCTAGTCAGTTTTGGGAAGAGGGTTATTATTCTGATCCCCAAATACAAATCATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000021920.8 |
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| CDS-3UTR TCA 90 bp | CATGATTTGTATTTGGGGATCAGAATAATAACCCTCTTCCCAAAACTGACTAGATTGCGAGGATTCTTTTaGTCTTCAATCTCTTGTTCT | + |
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Preference number: 4 (lower is better) Translates to: HDLYLGIRIITLFPKLTRLRGFF*SSISCS Trigger: AGAACAAGAGATTGAAGATCAAAAGAATCCTCGCAA...TCTAGTCAGTTTTGGGAAGAGGGTTATTATTCTGATCCCCAAATACAAATCATG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000021920.8 |
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| CDS TCA 90 bp | GGGGACAGATGGTTCCAGTGTTCATGTACAAGCCCTCCACCACGATaGACCGCCGAGTCACACGGGCCTTGCGAGGATTCTTTTGATCTT | + |
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Preference number: 5 (lower is better) Translates to: GDRWFQCSCTSPPPR*TAESHGPCEDSFDL Trigger: AAGATCAAAAGAATCCTCGCAAGGCCCGTGTGACTCGGCGGTTCATCGTGGTGGAGGGCTTGTACATGAACACTGGAACCATCTGTCCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021920.8 |
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| CDS TCA 90 bp | TTCACATCTTTCTCCCGAGAGCCCGTGCTCTCTTCCAGCTGGAGATaGAGCGCCGGAGAAAGGGACTCTCCCACCACTTTTAAACCCGAA | + |
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Preference number: 5 (lower is better) Translates to: FTSFSREPVLSSSWR*SAGERDSPTTFKPE Trigger: TTCGGGTTTAAAAGTGGTGGGAGAGTCCCTTTCTCCGGCGCTTCATCTCCAGCTGGAAGAGAGCACGGGCTCTCGGGAGAAAGATGTGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021920.8 |
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| CDS-3UTR CAA 90 bp | TCCCCGACAGGAGTGTACCCTCACAGCAGCAGCAATCACAAGGCACGTATGAAAAGAAAAGCAGTATCCTaGACCGGAGAGCCGCTGATG | + |
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Preference number: 5 (lower is better) Translates to: SPTGVYPHSSSNHKARMKRKAVS*TGEPLM Trigger: CATCAGCGGCTCTCCGGTCAAGGATACTGCTTTTCT...TTTCATACGTGCCTTGTGATTGCTGCTGCTGTGAGGGTACACTCCTGTCGGGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000021920.8 |
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| CDS GCA 90 bp | GATGCTTGGAGGAGGAAGGCACTTCTCTTCCTTGTCCAAGTACCGTaGCTGAGTCAATGCGATGCCCTTATCCATGCACTGATCTACGAT | + |
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Preference number: 5 (lower is better) Translates to: DAWRRKALLFLVQVP*LSQCDALIHALIYD Trigger: ATCGTAGATCAGTGCATGGATAAGGGCATCGCATTGACTCAGGCACGGTACTTGGACAAGGAAGAGAAGTGCCTTCCTCCTCCAAGCATC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021920.8 |
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| CDS GCA 90 bp | AACCACGAAGGAGCGGCCACAGCAGAAGCCCCCGACAGAAGCGAGTaGATTCTCCATGTTAGCACTGATAAGGTCAATATCATCAATACT | + |
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Preference number: 5 (lower is better) Translates to: NHEGAATAEAPDRSE*ILHVSTDKVNIINT Trigger: AGTATTGATGATATTGACCTTATCAGTGCTAACATGGAGAATGCACTCGCTTCTGTCGGGGGCTTCTGCTGTGGCCGCTCCTTCGTGGTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021920.8 |
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| CDS GCA 90 bp | CCTTGTCCAAGTACCGTGCCTGAGTCAATGCGATGCCCTTATCCATaGACTGATCTACGATTGCTTGAAGCAGCTTCACATCTTTCTCCC | + |
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Preference number: 5 (lower is better) Translates to: PCPSTVPESMRCPYP*TDLRLLEAASHLSP Trigger: GGGAGAAAGATGTGAAGCTGCTTCAAGCAATCGTAGATCAGTGCATGGATAAGGGCATCGCATTGACTCAGGCACGGTACTTGGACAAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021920.8 |
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| CDS GCA 90 bp | GGCACTTCTCTTCCTTGTCCAAGTACCGTGCCTGAGTCAATGCGATaGCCTTATCCATGCACTGATCTACGATTGCTTGAAGCAGCTTCA | + |
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Preference number: 5 (lower is better) Translates to: GTSLPCPSTVPESMR*PYPCTDLRLLEAAS Trigger: TGAAGCTGCTTCAAGCAATCGTAGATCAGTGCATGGATAAGGGCATCGCATTGACTCAGGCACGGTACTTGGACAAGGAAGAGAAGTGCC 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021920.8 |
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| CDS GCA 90 bp | AGGAAGGCACTTCTCTTCCTTGTCCAAGTACCGTGCCTGAGTCAATaGGATGCCCTTATCCATGCACTGATCTACGATTGCTTGAAGCAG | + |
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Preference number: 5 (lower is better) Translates to: RKALLFLVQVPCLSQ*DALIHALIYDCLKQ Trigger: CTGCTTCAAGCAATCGTAGATCAGTGCATGGATAAGGGCATCGCATTGACTCAGGCACGGTACTTGGACAAGGAAGAGAAGTGCCTTCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021920.8 |
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| CDS-3UTR CAA 90 bp | GGCTGTGTATTCAAGCACAGCCACACCCTGGGCAGCTGGAGGTCTCTGAGTAGTCTTGCGAGGATTCTTTaGATCTTCAATCTCTTGTTC | + |
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Preference number: 5 (lower is better) Translates to: GCVFKHSHTLGSWRSLSSLARIL*IFNLLF Trigger: GAACAAGAGATTGAAGATCAAAAGAATCCTCGCAAG...ACTACTCAGAGACCTCCAGCTGCCCAGGGTGTGGCTGTGCTTGAATACACAGCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021920.8 |
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| CDS-3UTR CAA 90 bp | CTTTTCCCCGACAGGAGTGTACCCTCACAGCAGCAGCAATCACAAGGCACGTATCTGATCTACGATTGCTaGAAGCAGCTTCACATCTTT | + |
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Preference number: 5 (lower is better) Translates to: LFPDRSVPSQQQQSQGTYLIYDC*KQLHIF Trigger: AAAGATGTGAAGCTGCTTCAAGCAATCGTAGATCAG...ATACGTGCCTTGTGATTGCTGCTGCTGTGAGGGTACACTCCTGTCGGGGAAAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021920.8 |
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| CDS CCA 90 bp | TGCTTAAATAACTTAATGTCACTTCTTGATGCCTGTAATCCTTTCTaGATAGCAAAGCAGGCCGCACTGTCCACAAAGATGATGTCCCCT | + |
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Preference number: 5 (lower is better) Translates to: CLNNLMSLLDACNPF*IAKQAALSTKMMSP Trigger: AGGGGACATCATCTTTGTGGACAGTGCGGCCTGCTTTGCTATCCAGAAAGGATTACAGGCATCAAGAAGTGACATTAAGTTATTTAAGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021920.8 |
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| CDS TCA 72 bp | TGGTTCCAGTGTTCATGTACAAGCCCTCCACCACGATaGACCGCCGAGTCACACGGGCCTTGCGAGGATTCT | + |
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Preference number: 6 (lower is better) Translates to: WFQCSCTSPPPR*TAESHGPCEDS Trigger: AGAATCCTCGCAAGGCCCGTGTGACTCGGCGGTTCATCGTGGTGGAGGGCTTGTACATGAACACTGGAACCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021920.8 |
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| CDS GCA 72 bp | ATGGTGGATGCAGCCCTCTGTAGCTCTTCCTCCGTCTaGTCCACAGTGACCACAACCCTGATGCTTGGAGGA | + |
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Preference number: 6 (lower is better) Translates to: MVDAALCSSSSV*STVTTTLMLGG Trigger: TCCTCCAAGCATCAGGGTTGTGGTCACTGTGGAGCAGACGGAGGAAGAGCTACAGAGGGCTGCATCCACCAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021920.8 |
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| CDS GCA 72 bp | CTTGAAGCAGCTTCACATCTTTCTCCCGAGAGCCCGTaGTCTCTTCCAGCTGGAGATGAAGCGCCGGAGAAA | + |
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Preference number: 6 (lower is better) Translates to: LEAASHLSPESP*SLPAGDEAPEK Trigger: TTTCTCCGGCGCTTCATCTCCAGCTGGAAGAGAGCACGGGCTCTCGGGAGAAAGATGTGAAGCTGCTTCAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021920.8 |
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| CDS GCA 72 bp | GGAGCGGCCACAGCAGAAGCCCCCGACAGAAGCGAGTaGATTCTCCATGTTAGCACTGATAAGGTCAATATC | + |
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Preference number: 6 (lower is better) Translates to: GAATAEAPDRSE*ILHVSTDKVNI Trigger: GATATTGACCTTATCAGTGCTAACATGGAGAATGCACTCGCTTCTGTCGGGGGCTTCTGCTGTGGCCGCTCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021920.8 |
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| CDS GCA 72 bp | CCAGGCGCTCTTCTAAATCCAGATGGACATCAAATGTaGCATAGAACCCTCGAGGACCACAGGTACCCACTC | + |
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Preference number: 6 (lower is better) Translates to: PGALLNPDGHQM*HRTLEDHRYPL Trigger: GAGTGGGTACCTGTGGTCCTCGAGGGTTCTATGGCACATTTGATGTCCATCTGGATTTAGAAGAGCGCCTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021920.8 |
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| CDS GCA 72 bp | AGGAGGAAGGCACTTCTCTTCCTTGTCCAAGTACCGTaGCTGAGTCAATGCGATGCCCTTATCCATGCACTG | + |
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Preference number: 6 (lower is better) Translates to: RRKALLFLVQVP*LSQCDALIHAL Trigger: CAGTGCATGGATAAGGGCATCGCATTGACTCAGGCACGGTACTTGGACAAGGAAGAGAAGTGCCTTCCTCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021920.8 |
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| CDS CAA 72 bp | TGCGATGCCCTTATCCATGCACTGATCTACGATTGCTaGAAGCAGCTTCACATCTTTCTCCCGAGAGCCCGT | + |
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Preference number: 6 (lower is better) Translates to: CDALIHALIYDC*KQLHIFLPRAR Trigger: ACGGGCTCTCGGGAGAAAGATGTGAAGCTGCTTCAAGCAATCGTAGATCAGTGCATGGATAAGGGCATCGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021920.8 |
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| CDS GCA 72 bp | CAATGCGATGCCCTTATCCATGCACTGATCTACGATTaGTTGAAGCAGCTTCACATCTTTCTCCCGAGAGCC | + |
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Preference number: 6 (lower is better) Translates to: QCDALIHALIYD*LKQLHIFLPRA Trigger: GGCTCTCGGGAGAAAGATGTGAAGCTGCTTCAAGCAATCGTAGATCAGTGCATGGATAAGGGCATCGCATTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021920.8 |
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| CDS CAA 72 bp | TCAATGCGATGCCCTTATCCATGCACTGATCTACGATaGCTTGAAGCAGCTTCACATCTTTCTCCCGAGAGC | + |
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Preference number: 6 (lower is better) Translates to: SMRCPYPCTDLR*LEAASHLSPES Trigger: GCTCTCGGGAGAAAGATGTGAAGCTGCTTCAAGCAATCGTAGATCAGTGCATGGATAAGGGCATCGCATTGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021920.8 |
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| CDS CAA 90 bp | CCGTACTTCTTTAAAGATGAAAAAGCTGTGGCCTTAACTCGAGGGTaGGCCAGCAGCCCAAGGAAGTTAAAGGAGGCAAAGTTGACACAC | + |
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Preference number: 6 (lower is better) Translates to: PYFFKDEKAVALTRG*ASSPRKLKEAKLTH Trigger: GTGTGTCAACTTTGCCTCCTTTAACTTCCTTGGGCTGCTGGCCAACCCTCGAGTTAAGGCCACAGCTTTTTCATCTTTAAAGAAGTACGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021920.8 |
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| CDS CAA 72 bp | TTTAAAGATGAAAAAGCTGTGGCCTTAACTCGAGGGTaGGCCAGCAGCCCAAGGAAGTTAAAGGAGGCAAAG | + |
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Preference number: 6 (lower is better) Translates to: FKDEKAVALTRG*ASSPRKLKEAK Trigger: CTTTGCCTCCTTTAACTTCCTTGGGCTGCTGGCCAACCCTCGAGTTAAGGCCACAGCTTTTTCATCTTTAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021920.8 |
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| CDS CCA 72 bp | AACTTAATGTCACTTCTTGATGCCTGTAATCCTTTCTaGATAGCAAAGCAGGCCGCACTGTCCACAAAGATG | + |
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Preference number: 6 (lower is better) Translates to: NLMSLLDACNPF*IAKQAALSTKM Trigger: CATCTTTGTGGACAGTGCGGCCTGCTTTGCTATCCAGAAAGGATTACAGGCATCAAGAAGTGACATTAAGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021920.8 |
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