RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SPSB4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000046997

Ensembl transcript IDs: ENSMUST00000055433.5

Found 71 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GTGGGACCCTGGACTCATCTCTCAAAGTGGTACCAAGTCTTAAAATaGAGGACAGTCTCTCTGCCCTGGCCAGGGGCAGGCGTGGAGGAG +
Preference number: 1 (lower is better)
Translates to: VGPWTHLSKWYQVLK*RTVSLPWPGAGVEE
Trigger: CTCCTCCACGCCTGCCCCTGGCCAGGGCAGAGAGACTGTCCTCCATTTTAAGACTTGGTACCACTTTGAGAGATGAGTCCAGGGTCCCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
3UTR CCA 90 bp TCAAAGTGGTACCAAGTCTTAAAATGGAGGACAGTCTCTCTGCCCTaGCCAGGGGCAGGCGTGGAGGAGACCATCAAGGGCTGGCTTCTG +
Preference number: 1 (lower is better)
Translates to: SKWYQVLKWRTVSLP*PGAGVEETIKGWLL
Trigger: CAGAAGCCAGCCCTTGATGGTCTCCTCCACGCCTGCCCCTGGCCAGGGCAGAGAGACTGTCCTCCATTTTAAGACTTGGTACCACTTTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
3UTR CCA 90 bp GTCTCTACACTCTGGTTCACGAGGTGGCCTCCTGGTCCTGGTCGGTaGCAGCAATGGCAACAGGCATTCCTTTTCCAAGTCACTGATGTG +
Preference number: 1 (lower is better)
Translates to: VSTLWFTRWPPGPGR*QQWQQAFLFQVTDV
Trigger: CACATCAGTGACTTGGAAAAGGAATGCCTGTTGCCATTGCTGCCACCGACCAGGACCAGGAGGCCACCTCGTGAACCAGAGTGTAGAGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
3UTR TCA 90 bp TGGTCGGTGGCAGCAATGGCAACAGGCATTCCTTTTCCAAGTCACTaGTGTGTCCTGACGCTCTGGAGCTGTGTGACCACAGATGACAGC +
Preference number: 1 (lower is better)
Translates to: WSVAAMATGIPFPSH*CVLTLWSCVTTDDS
Trigger: GCTGTCATCTGTGGTCACACAGCTCCAGAGCGTCAGGACACATCAGTGACTTGGAAAAGGAATGCCTGTTGCCATTGCTGCCACCGACCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
3UTR TCA 90 bp AATGGCCAAAGAACTTTATCCATGACGGAAGAGGGCAGGAGGGGATaGGGAAACCGGCTCAGAGAGGTAAGGCCAGGTGCTTTTGCCCTG +
Preference number: 1 (lower is better)
Translates to: NGQRTLSMTEEGRRG*GNRLREVRPGAFAL
Trigger: CAGGGCAAAAGCACCTGGCCTTACCTCTCTGAGCCGGTTTCCTCATCCCCTCCTGCCCTCTTCCGTCATGGATAAAGTTCTTTGGCCATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
3UTR GCA 90 bp CAGTCCCAAGGCCACACCGCGGGGCCCCAGCTGATAAATAAACGGTaGATCACACACATATTGGAAACGAGAAACAAACTGGAAGTCTCC +
Preference number: 1 (lower is better)
Translates to: QSQGHTAGPQLINKR*ITHILETRNKLEVS
Trigger: GGAGACTTCCAGTTTGTTTCTCGTTTCCAATATGTGTGTGATGCACCGTTTATTTATCAGCTGGGGCCCCGCGGTGTGGCCTTGGGACTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
3UTR TCA 90 bp AATTTGCTCAAAGAAAGCTTTGTGACAGCCAGGCTTCACCCTGAATaGTGGCTGCCAGAGCCCTGGATACTCAGGGTGTCTCAGACTTGG +
Preference number: 1 (lower is better)
Translates to: NLLKESFVTARLHPE*WLPEPWILRVSQTW
Trigger: CCAAGTCTGAGACACCCTGAGTATCCAGGGCTCTGGCAGCCATCATTCAGGGTGAAGCCTGGCTGTCACAAAGCTTTCTTTGAGCAAATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
3UTR GCA 90 bp GAAATGTTCCTTGCTTGTAGGTCACATTCACATTACAGTGTAGGCTaGACTGTCTGGCTCTGTATCCTACTCTGTGATGATTTCCAGTTA +
Preference number: 1 (lower is better)
Translates to: EMFLACRSHSHYSVG*TVWLCILLCDDFQL
Trigger: TAACTGGAAATCATCACAGAGTAGGATACAGAGCCAGACAGTGCAGCCTACACTGTAATGTGAATGTGACCTACAAGCAAGGAACATTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
3UTR CCA 90 bp CTTGCTTGTAGGTCACATTCACATTACAGTGTAGGCTGCACTGTCTaGCTCTGTATCCTACTCTGTGATGATTTCCAGTTAAAACTGAGT +
Preference number: 1 (lower is better)
Translates to: LACRSHSHYSVGCTV*LCILLCDDFQLKLS
Trigger: ACTCAGTTTTAACTGGAAATCATCACAGAGTAGGATACAGAGCCAGACAGTGCAGCCTACACTGTAATGTGAATGTGACCTACAAGCAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
3UTR TCA 90 bp CACACACATATTGGAAACGAGAAACAAACTGGAAGTCTCCTACAGTaGAAAAATAATTTGCTCAAAGAAAGCTTTGTGACAGCCAGGCTT +
Preference number: 1 (lower is better)
Translates to: HTHIGNEKQTGSLLQ*KNNLLKESFVTARL
Trigger: AAGCCTGGCTGTCACAAAGCTTTCTTTGAGCAAATTATTTTTTCACTGTAGGAGACTTCCAGTTTGTTTCTCGTTTCCAATATGTGTGTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
3UTR-3UTR CCA 90 bp AGACTGTTATACCCACCTTTGCAGTCCCAAGGCCACACCGCGGGGCCCCAGCTGACAGTCTCTCTGCCCTaGCCAGGGGCAGGCGTGGAG +
Preference number: 2 (lower is better)
Translates to: RLLYPPLQSQGHTAGPQLTVSLP*PGAGVE
Trigger: CTCCACGCCTGCCCCTGGCCAGGGCAGAGAGACTGT...CAGCTGGGGCCCCGCGGTGTGGCCTTGGGACTGCAAAGGTGGGTATAACAGTCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
3UTR-3UTR TCA 90 bp CTCAGACTTGGTGTCACGAGGGCCCCATCTTCCTTAGCACCTTTGGGAGAAAGCGAGGGCAGGAGGGGATaGGGAAACCGGCTCAGAGAG +
Preference number: 2 (lower is better)
Translates to: LRLGVTRAPSSLAPLGESEGRRG*GNRLRE
Trigger: CTCTCTGAGCCGGTTTCCTCATCCCCTCCTGCCCTC...GCTTTCTCCCAAAGGTGCTAAGGAAGATGGGGCCCTCGTGACACCAAGTCTGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
3UTR-3UTR TCA 90 bp AGACTGTTATACCCACCTTTGCAGTCCCAAGGCCACACCGCGGGGCCCCAGCTGTCAAAGAAAGCTTTGTaGCAGCCAGGCTTCACCCTG +
Preference number: 2 (lower is better)
Translates to: RLLYPPLQSQGHTAGPQLSKKAL*QPGFTL
Trigger: CAGGGTGAAGCCTGGCTGTCACAAAGCTTTCTTTGA...CAGCTGGGGCCCCGCGGTGTGGCCTTGGGACTGCAAAGGTGGGTATAACAGTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
3UTR-3UTR GCA 90 bp TGGTGTCACGAGGGCCCCATCTTCCTTAGCACCTTTGGGAGAAAGCCACCTTCAAAGGCCAGGTGCTTTTaGCCTGCTGTGGGACCCTGG +
Preference number: 2 (lower is better)
Translates to: WCHEGPIFLSTFGRKPPSKARCF*PAVGPW
Trigger: CCAGGGTCCCACAGCAGGGCAAAAGCACCTGGCCTT...TGAAGGTGGCTTTCTCCCAAAGGTGCTAAGGAAGATGGGGCCCTCGTGACACCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
3UTR-3UTR GCA 90 bp CAAGTCATCAGATTCATGTCCCTGAATAAAGTGGGGAGGGGAATGGCCAAAGAAGGAGGACAGTCTCTCTaGCCTGGCCAGGGGCAGGCG +
Preference number: 2 (lower is better)
Translates to: QVIRFMSLNKVGRGMAKEGGQSL*PGQGQA
Trigger: CGCCTGCCCCTGGCCAGGGCAGAGAGACTGTCCTCC...TTCTTTGGCCATTCCCCTCCCCACTTTATTCAGGGACATGAATCTGATGACTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
3UTR-3UTR CCA 90 bp AGGTCACATTCACATTACAGTGTAGGCTGCACTGTCTGGCTCTGTATCCTACTCCACGAGGTGGCCTCCTaGTCCTGGTCGGTGGCAGCA +
Preference number: 2 (lower is better)
Translates to: RSHSHYSVGCTVWLCILLHEVAS*SWSVAA
Trigger: TGCTGCCACCGACCAGGACCAGGAGGCCACCTCGTG...GAGTAGGATACAGAGCCAGACAGTGCAGCCTACACTGTAATGTGAATGTGACCT
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
3UTR-3UTR CCA 90 bp AGGTCACATTCACATTACAGTGTAGGCTGCACTGTCTGGCTCTGTATCCTACTCGGCCAGGGGCAGGCGTaGAGGAGACCATCAAGGGCT +
Preference number: 2 (lower is better)
Translates to: RSHSHYSVGCTVWLCILLGQGQA*RRPSRA
Trigger: AGCCCTTGATGGTCTCCTCCACGCCTGCCCCTGGCC...GAGTAGGATACAGAGCCAGACAGTGCAGCCTACACTGTAATGTGAATGTGACCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
3UTR-3UTR CCA 90 bp ACTCTGTCCCCAGGGCAAGTCATCAGATTCATGTCCCTGAATAAAGTGGGGAGGGGTCGGTGGCAGCAATaGCAACAGGCATTCCTTTTC +
Preference number: 2 (lower is better)
Translates to: TLSPGQVIRFMSLNKVGRGRWQQ*QQAFLF
Trigger: GAAAAGGAATGCCTGTTGCCATTGCTGCCACCGACC...CCTCCCCACTTTATTCAGGGACATGAATCTGATGACTTGCCCTGGGGACAGAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
3UTR-3UTR GCA 90 bp TGGTGTCACGAGGGCCCCATCTTCCTTAGCACCTTTGGGAGAAAGCCACCTTCACTGGATGCCGTCTCCTaGCCAATGTTTTATTCATTC +
Preference number: 2 (lower is better)
Translates to: WCHEGPIFLSTFGRKPPSLDAVS*PMFYSF
Trigger: GAATGAATAAAACATTGGGCAGGAGACGGCATCCAG...TGAAGGTGGCTTTCTCCCAAAGGTGCTAAGGAAGATGGGGCCCTCGTGACACCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
3UTR-3UTR CCA 90 bp CTCAGACTTGGTGTCACGAGGGCCCCATCTTCCTTAGCACCTTTGGGAGAAAGCGAGACCATCAAGGGCTaGCTTCTGTCATTCATTATT +
Preference number: 2 (lower is better)
Translates to: LRLGVTRAPSSLAPLGESETIKG*LLSFII
Trigger: AATAATGAATGACAGAAGCCAGCCCTTGATGGTCTC...GCTTTCTCCCAAAGGTGCTAAGGAAGATGGGGCCCTCGTGACACCAAGTCTGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
3UTR-3UTR TCA 90 bp TGTTTTATTCATTCTCTTGAGGAAGATAATGGTCTCTACACTCTGGTTCACGAGCTGTGTGACCACAGATaGCAGCCGATCCTCAGCGCC +
Preference number: 2 (lower is better)
Translates to: CFIHSLEEDNGLYTLVHELCDHR*QPILSA
Trigger: GGCGCTGAGGATCGGCTGTCATCTGTGGTCACACAG...CTCGTGAACCAGAGTGTAGAGACCATTATCTTCCTCAAGAGAATGAATAAAACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
3UTR-3UTR CCA 90 bp AATAAACGGTGCATCACACACATATTGGAAACGAGAAACAAACTGGAAGTCTCCCCATTTTCTCTCCACTaGCCAATTTTCCTGGGTCTG +
Preference number: 2 (lower is better)
Translates to: NKRCITHILETRNKLEVSPFSLH*PIFLGL
Trigger: CAGACCCAGGAAAATTGGCCAGTGGAGAGAAAATGG...GGAGACTTCCAGTTTGTTTCTCGTTTCCAATATGTGTGTGATGCACCGTTTATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
3UTR-3UTR CCA 90 bp AATAAACGGTGCATCACACACATATTGGAAACGAGAAACAAACTGGAAGTCTCCAAGTGGGGAGGGGAATaGCCAAAGAACTTTATCCAT +
Preference number: 2 (lower is better)
Translates to: NKRCITHILETRNKLEVSKWGGE*PKNFIH
Trigger: ATGGATAAAGTTCTTTGGCCATTCCCCTCCCCACTT...GGAGACTTCCAGTTTGTTTCTCGTTTCCAATATGTGTGTGATGCACCGTTTATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
3UTR CCA 72 bp CTCTGGTTCACGAGGTGGCCTCCTGGTCCTGGTCGGTaGCAGCAATGGCAACAGGCATTCCTTTTCCAAGTC +
Preference number: 3 (lower is better)
Translates to: LWFTRWPPGPGR*QQWQQAFLFQV
Trigger: GACTTGGAAAAGGAATGCCTGTTGCCATTGCTGCCACCGACCAGGACCAGGAGGCCACCTCGTGAACCAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
3UTR CCA 72 bp TACCAAGTCTTAAAATGGAGGACAGTCTCTCTGCCCTaGCCAGGGGCAGGCGTGGAGGAGACCATCAAGGGC +
Preference number: 3 (lower is better)
Translates to: YQVLKWRTVSLP*PGAGVEETIKG
Trigger: GCCCTTGATGGTCTCCTCCACGCCTGCCCCTGGCCAGGGCAGAGAGACTGTCCTCCATTTTAAGACTTGGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
3UTR GCA 72 bp AGGAAACCGGCTCAGAGAGGTAAGGCCAGGTGCTTTTaGCCTGCTGTGGGACCCTGGACTCATCTCTCAAAG +
Preference number: 3 (lower is better)
Translates to: RKPAQRGKARCF*PAVGPWTHLSK
Trigger: CTTTGAGAGATGAGTCCAGGGTCCCACAGCAGGGCAAAAGCACCTGGCCTTACCTCTCTGAGCCGGTTTCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
3UTR CCA 72 bp AATGGTCTCTACACTCTGGTTCACGAGGTGGCCTCCTaGTCCTGGTCGGTGGCAGCAATGGCAACAGGCATT +
Preference number: 3 (lower is better)
Translates to: NGLYTLVHEVAS*SWSVAAMATGI
Trigger: AATGCCTGTTGCCATTGCTGCCACCGACCAGGACCAGGAGGCCACCTCGTGAACCAGAGTGTAGAGACCATT
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
3UTR CCA 72 bp GTGGAGGGTATCTTGGAACACACAAAAGATGCCAAATaGTGGCGCTGGCGGCAGCAGCAGCAGCAGCAGCAA +
Preference number: 3 (lower is better)
Translates to: VEGILEHTKDAK*WRWRQQQQQQQ
Trigger: TTGCTGCTGCTGCTGCTGCTGCCGCCAGCGCCACCATTTGGCATCTTTTGTGTGTTCCAAGATACCCTCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
3UTR CCA 72 bp CTCTCCACTGGCCAATTTTCCTGGGTCTGTCTGCAGTaGGGAACTAACTGGATGCCGTCTCCTGCCCAATGT +
Preference number: 3 (lower is better)
Translates to: LSTGQFSWVCLQ*GTNWMPSPAQC
Trigger: ACATTGGGCAGGAGACGGCATCCAGTTAGTTCCCCACTGCAGACAGACCCAGGAAAATTGGCCAGTGGAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
3UTR CCA 72 bp CTCAGAGAGGTAAGGCCAGGTGCTTTTGCCCTGCTGTaGGACCCTGGACTCATCTCTCAAAGTGGTACCAAG +
Preference number: 3 (lower is better)
Translates to: LREVRPGAFALL*DPGLISQSGTK
Trigger: CTTGGTACCACTTTGAGAGATGAGTCCAGGGTCCCACAGCAGGGCAAAAGCACCTGGCCTTACCTCTCTGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
3UTR CCA 72 bp GAGGGTATCTTGGAACACACAAAAGATGCCAAATGGTaGCGCTGGCGGCAGCAGCAGCAGCAGCAGCAACAT +
Preference number: 3 (lower is better)
Translates to: EGILEHTKDAKW*RWRQQQQQQQH
Trigger: ATGTTGCTGCTGCTGCTGCTGCTGCCGCCAGCGCCACCATTTGGCATCTTTTGTGTGTTCCAAGATACCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
3UTR TCA 72 bp GCTCAAAGAAAGCTTTGTGACAGCCAGGCTTCACCCTaGATGATGGCTGCCAGAGCCCTGGATACTCAGGGT +
Preference number: 3 (lower is better)
Translates to: AQRKLCDSQASP*MMAARALDTQG
Trigger: ACCCTGAGTATCCAGGGCTCTGGCAGCCATCATTCAGGGTGAAGCCTGGCTGTCACAAAGCTTTCTTTGAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
3UTR TCA 72 bp AAAGAAAGCTTTGTGACAGCCAGGCTTCACCCTGAATaGTGGCTGCCAGAGCCCTGGATACTCAGGGTGTCT +
Preference number: 3 (lower is better)
Translates to: KESFVTARLHPE*WLPEPWILRVS
Trigger: AGACACCCTGAGTATCCAGGGCTCTGGCAGCCATCATTCAGGGTGAAGCCTGGCTGTCACAAAGCTTTCTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
3UTR GCA 72 bp TTTCCTGGGTCTGTCTGCAGTGGGGAACTAACTGGATaGCGTCTCCTGCCCAATGTTTTATTCATTCTCTTG +
Preference number: 3 (lower is better)
Translates to: FPGSVCSGELTG*RLLPNVLFILL
Trigger: CAAGAGAATGAATAAAACATTGGGCAGGAGACGGCATCCAGTTAGTTCCCCACTGCAGACAGACCCAGGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
3UTR CCA 72 bp TTTCCAGTTAAAACTGAGTCTGGGTGGAGGGTATCTTaGAACACACAAAAGATGCCAAATGGTGGCGCTGGC +
Preference number: 3 (lower is better)
Translates to: FPVKTESGWRVS*NTQKMPNGGAG
Trigger: GCCAGCGCCACCATTTGGCATCTTTTGTGTGTTCCAAGATACCCTCCACCCAGACTCAGTTTTAACTGGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
3UTR-3UTR CAA 90 bp AATAAACGGTGCATCACACACATATTGGAAACGAGAAACAAACTGGAAGTCTCCTCTTCCTTAGCACCTTaGGGAGAAAGCCACCTTCAC +
Preference number: 3 (lower is better)
Translates to: NKRCITHILETRNKLEVSSSLAP*GESHLH
Trigger: GTGAAGGTGGCTTTCTCCCAAAGGTGCTAAGGAAGA...GGAGACTTCCAGTTTGTTTCTCGTTTCCAATATGTGTGTGATGCACCGTTTATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
3UTR CCA 72 bp AGGTCACATTCACATTACAGTGTAGGCTGCACTGTCTaGCTCTGTATCCTACTCTGTGATGATTTCCAGTTA +
Preference number: 3 (lower is better)
Translates to: RSHSHYSVGCTV*LCILLCDDFQL
Trigger: TAACTGGAAATCATCACAGAGTAGGATACAGAGCCAGACAGTGCAGCCTACACTGTAATGTGAATGTGACCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
CDS-3UTR TCA 90 bp AGGTCCTGCAGAGACTGTTATACCCACCTTTGCAGTCCCAAGGCCACACCGCGGCTGTCGGCCCAGGGCTaGGCGGATGGATCGCCGGCA +
Preference number: 4 (lower is better)
Translates to: RSCRDCYTHLCSPKATPRLSAQG*ADGSPA
Trigger: TGCCGGCGATCCATCCGCTCAGCCCTGGGCCGACAG...CCGCGGTGTGGCCTTGGGACTGCAAAGGTGGGTATAACAGTCTCTGCAGGACCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
CDS-3UTR CCA 90 bp CTCAGACTTGGTGTCACGAGGGCCCCATCTTCCTTAGCACCTTTGGGAGAAAGCACGCCCACCACAGCGTaGGTGCCCCGCTGCCTAGCG +
Preference number: 4 (lower is better)
Translates to: LRLGVTRAPSSLAPLGESTPTTA*VPRCLA
Trigger: CGCTAGGCAGCGGGGCACCCACGCTGTGGTGGGCGT...GCTTTCTCCCAAAGGTGCTAAGGAAGATGGGGCCCTCGTGACACCAAGTCTGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
CDS-3UTR CCA 90 bp GAGACTGTTATACCCACCTTTGCAGTCCCAAGGCCACACCGCGGGGCCCCAGCTGCCACGCCCAGGTACTaGCCATCCACGATGAAGCTG +
Preference number: 4 (lower is better)
Translates to: ETVIPTFAVPRPHRGAPAATPRY*PSTMKL
Trigger: CAGCTTCATCGTGGATGGCCAGTACCTGGGCGTGGC...AGCTGGGGCCCCGCGGTGTGGCCTTGGGACTGCAAAGGTGGGTATAACAGTCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
3UTR CAA 72 bp AGGTCTCAGGTCCTGCAGAGACTGTTATACCCACCTTaGCAGTCCCAAGGCCACACCGCGGGGCCCCAGCTG +
Preference number: 4 (lower is better)
Translates to: RSQVLQRLLYPP*QSQGHTAGPQL
Trigger: CAGCTGGGGCCCCGCGGTGTGGCCTTGGGACTGCAAAGGTGGGTATAACAGTCTCTGCAGGACCTGAGACCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
CDS-3UTR GCA 90 bp GGTGCTTTTGCCCTGCTGTGGGACCCTGGACTCATCTCTCAAAGTGGTACCAAGCCCCAGGCCGGTTCTTaGCGTCGTGGTAGAGGCGGC +
Preference number: 4 (lower is better)
Translates to: GAFALLWDPGLISQSGTKPQAGS*RRGRGG
Trigger: GCCGCCTCTACCACGACGGCAAGAACCGGCCTGGGG...CTTGGTACCACTTTGAGAGATGAGTCCAGGGTCCCACAGCAGGGCAAAAGCACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
CDS-3UTR CCA 90 bp TCCACTGGCCAATTTTCCTGGGTCTGTCTGCAGTGGGGAACTAACTGGATGCCGGAGCTCCCGCTTAGCTaGCCGAAGCGCTGGCTCTCG +
Preference number: 4 (lower is better)
Translates to: STGQFSWVCLQWGTNWMPELPLS*PKRWLS
Trigger: CGAGAGCCAGCGCTTCGGCCAGCTAAGCGGGAGCTC...CGGCATCCAGTTAGTTCCCCACTGCAGACAGACCCAGGAAAATTGGCCAGTGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
CDS-3UTR GCA 90 bp TGGTGTCACGAGGGCCCCATCTTCCTTAGCACCTTTGGGAGAAAGCCACCTTCAGGGCATGGCCCACCTTaGCACGGATGCCATCTGTGC +
Preference number: 4 (lower is better)
Translates to: WCHEGPIFLSTFGRKPPSGHGPP*HGCHLC
Trigger: GCACAGATGGCATCCGTGGCAAGGTGGGCCATGCCC...TGAAGGTGGCTTTCTCCCAAAGGTGCTAAGGAAGATGGGGCCCTCGTGACACCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
CDS-3UTR CCA 90 bp GGTGCTTTTGCCCTGCTGTGGGACCCTGGACTCATCTCTCAAAGTGGTACCAAGGCTACTGGGTGCCGGTaGAAGGTGAGGCGGTCGTCA +
Preference number: 4 (lower is better)
Translates to: GAFALLWDPGLISQSGTKATGCR*KVRRSS
Trigger: TGACGACCGCCTCACCTTCCACCGGCACCCAGTAGC...CTTGGTACCACTTTGAGAGATGAGTCCAGGGTCCCACAGCAGGGCAAAAGCACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
CDS-3UTR CCA 90 bp ACTCTGTCCCCAGGGCAAGTCATCAGATTCATGTCCCTGAATAAAGTGGGGAGGTGGCCCCAGGAAGGCTaGGTATGCCACCCCAGGCCG +
Preference number: 4 (lower is better)
Translates to: TLSPGQVIRFMSLNKVGRWPQEG*VCHPRP
Trigger: CGGCCTGGGGTGGCATACCCAGCCTTCCTGGGGCCA...CCTCCCCACTTTATTCAGGGACATGAATCTGATGACTTGCCCTGGGGACAGAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
CDS-3UTR CCA 90 bp AGGTCACATTCACATTACAGTGTAGGCTGCACTGTCTGGCTCTGTATCCTACTCAAGGGGCTCGGGCCGTaGCCACGCCCACCACAGCGT +
Preference number: 4 (lower is better)
Translates to: RSHSHYSVGCTVWLCILLKGLGP*PRPPQR
Trigger: ACGCTGTGGTGGGCGTGGCCACGGCCCGAGCCCCTT...GAGTAGGATACAGAGCCAGACAGTGCAGCCTACACTGTAATGTGAATGTGACCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
CDS-3UTR TCA 90 bp CTCAGACTTGGTGTCACGAGGGCCCCATCTTCCTTAGCACCTTTGGGAGAAAGCATAGTTTCTTGCCCTTaGGGCCACGGAAGGCCACGC +
Preference number: 4 (lower is better)
Translates to: LRLGVTRAPSSLAPLGESIVSCP*GHGRPR
Trigger: GCGTGGCCTTCCGTGGCCTCAAGGGCAAGAAACTAT...GCTTTCTCCCAAAGGTGCTAAGGAAGATGGGGCCCTCGTGACACCAAGTCTGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
CDS-3UTR CCA 90 bp TGGTGTCACGAGGGCCCCATCTTCCTTAGCACCTTTGGGAGAAAGCCACCTTCAAGCAAAGGCTTCATCTaGCCCCAGGAAGGCTGGGTA +
Preference number: 4 (lower is better)
Translates to: WCHEGPIFLSTFGRKPPSSKGFI*PQEGWV
Trigger: TACCCAGCCTTCCTGGGGCCAGATGAAGCCTTTGCT...TGAAGGTGGCTTTCTCCCAAAGGTGCTAAGGAAGATGGGGCCCTCGTGACACCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
CDS-3UTR TCA 90 bp ACTCTGTCCCCAGGGCAAGTCATCAGATTCATGTCCCTGAATAAAGTGGGGAGGGCACCTCCACAGACTTaGGGCTCCCAGAGAGCTTCT +
Preference number: 4 (lower is better)
Translates to: TLSPGQVIRFMSLNKVGRAPPQT*GSQRAS
Trigger: AGAAGCTCTCTGGGAGCCTCAAGTCTGTGGAGGTGC...CCTCCCCACTTTATTCAGGGACATGAATCTGATGACTTGCCCTGGGGACAGAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
CDS-3UTR TCA 90 bp ACTCTGTCCCCAGGGCAAGTCATCAGATTCATGTCCCTGAATAAAGTGGGGAGGATGGTGACTTCGCAGTaGCCCCACACAGCACTCACC +
Preference number: 4 (lower is better)
Translates to: TLSPGQVIRFMSLNKVGRMVTSQ*PHTALT
Trigger: GGTGAGTGCTGTGTGGGGTCACTGCGAAGTCACCAT...CCTCCCCACTTTATTCAGGGACATGAATCTGATGACTTGCCCTGGGGACAGAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
CDS-3UTR CCA 90 bp CAAGTCATCAGATTCATGTCCCTGAATAAAGTGGGGAGGGGAATGGCCAAAGAACCAGGGCTGAGCGGATaGATCGCCGGCACAGGTCCA +
Preference number: 4 (lower is better)
Translates to: QVIRFMSLNKVGRGMAKEPGLSG*IAGTGP
Trigger: TGGACCTGTGCCGGCGATCCATCCGCTCAGCCCTGG...TTCTTTGGCCATTCCCCTCCCCACTTTATTCAGGGACATGAATCTGATGACTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
3UTR CAA 72 bp CTTGGTGTCACGAGGGCCCCATCTTCCTTAGCACCTTaGGGAGAAAGCCACCTTCACCACACTCCTCTTTCA +
Preference number: 4 (lower is better)
Translates to: LGVTRAPSSLAP*GESHLHHTPLS
Trigger: TGAAAGAGGAGTGTGGTGAAGGTGGCTTTCTCCCAAAGGTGCTAAGGAAGATGGGGCCCTCGTGACACCAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
CDS-3UTR GCA 90 bp CAAGTCATCAGATTCATGTCCCTGAATAAAGTGGGGAGGGGAATGGCCAAAGAACCAATGGATCTGCCATaGGTGCAGACCCCGGGCATG +
Preference number: 4 (lower is better)
Translates to: QVIRFMSLNKVGRGMAKEPMDLP*VQTPGM
Trigger: CATGCCCGGGGTCTGCACGCATGGCAGATCCATTGG...TTCTTTGGCCATTCCCCTCCCCACTTTATTCAGGGACATGAATCTGATGACTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
CDS-3UTR CCA 90 bp CAGTTAAAACTGAGTCTGGGTGGAGGGTATCTTGGAACACACAAAAGATGCCAAAGCTGGCCGAAGCGCTaGCTCTCGCACCTCCACAGA +
Preference number: 4 (lower is better)
Translates to: QLKLSLGGGYLGTHKRCQSWPKR*LSHLHR
Trigger: TCTGTGGAGGTGCGAGAGCCAGCGCTTCGGCCAGCT...TTGGCATCTTTTGTGTGTTCCAAGATACCCTCCACCCAGACTCAGTTTTAACTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
CDS-3UTR CCA 90 bp AATAAACGGTGCATCACACACATATTGGAAACGAGAAACAAACTGGAAGTCTCCATGCCATCTGTGCTCTaGGCTACTGGGTGCCGGTGG +
Preference number: 4 (lower is better)
Translates to: NKRCITHILETRNKLEVSMPSVL*ATGCRW
Trigger: CCACCGGCACCCAGTAGCCCAGAGCACAGATGGCAT...GGAGACTTCCAGTTTGTTTCTCGTTTCCAATATGTGTGTGATGCACCGTTTATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
CDS TCA 90 bp CAGGGGCAGGGAGCCGATGTCACGCAGGCGCTGTCGGCCCAGGGCTaGGCGGATGGATCGCCGGCACAGGTCCATCAGCGGCAGAGGCTC +
Preference number: 5 (lower is better)
Translates to: QGQGADVTQALSAQG*ADGSPAQVHQRQRL
Trigger: GAGCCTCTGCCGCTGATGGACCTGTGCCGGCGATCCATCCGCTCAGCCCTGGGCCGACAGCGCCTGCGTGACATCGGCTCCCTGCCCCTG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
CDS CCA 90 bp GGGAGCCGATGTCACGCAGGCGCTGTCGGCCCAGGGCTGAGCGGATaGATCGCCGGCACAGGTCCATCAGCGGCAGAGGCTCAGGGTCAA +
Preference number: 5 (lower is better)
Translates to: GSRCHAGAVGPGLSG*IAGTGPSAAEAQGQ
Trigger: TTGACCCTGAGCCTCTGCCGCTGATGGACCTGTGCCGGCGATCCATCCGCTCAGCCCTGGGCCGACAGCGCCTGCGTGACATCGGCTCCC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
CDS CCA 90 bp AGACCCCGGGCATGGCCCACCTTGCCACGGATGCCATCTGTGCTCTaGGCTACTGGGTGCCGGTGGAAGGTGAGGCGGTCGTCATCCTTG +
Preference number: 5 (lower is better)
Translates to: RPRAWPTLPRMPSVL*ATGCRWKVRRSSSL
Trigger: CAAGGATGACGACCGCCTCACCTTCCACCGGCACCCAGTAGCCCAGAGCACAGATGGCATCCGTGGCAAGGTGGGCCATGCCCGGGGTCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
CDS-3UTR CAA 90 bp TCTCCACTGGCCAATTTTCCTGGGTCTGTCTGCAGTGGGGAACTAACTGGATGCTCCTTGACAAAGACATaGAGGGAGCGGTCCTCGGGG +
Preference number: 5 (lower is better)
Translates to: SPLANFPGSVCSGELTGCSLTKT*RERSSG
Trigger: CCCCGAGGACCGCTCCCTCAATGTCTTTGTCAAGGA...GCATCCAGTTAGTTCCCCACTGCAGACAGACCCAGGAAAATTGGCCAGTGGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
CDS-3UTR CAA 90 bp CTCAGACTTGGTGTCACGAGGGCCCCATCTTCCTTAGCACCTTTGGGAGAAAGCAGGCGGTCGTCATCCTaGACAAAGACATTGAGGGAG +
Preference number: 5 (lower is better)
Translates to: LRLGVTRAPSSLAPLGESRRSSS*TKTLRE
Trigger: CTCCCTCAATGTCTTTGTCAAGGATGACGACCGCCT...GCTTTCTCCCAAAGGTGCTAAGGAAGATGGGGCCCTCGTGACACCAAGTCTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
CDS-3UTR CAA 90 bp ACTCTGTCCCCAGGGCAAGTCATCAGATTCATGTCCCTGAATAAAGTGGGGAGGTATAGTTTCTTGCCCTaGAGGCCACGGAAGGCCACG +
Preference number: 5 (lower is better)
Translates to: TLSPGQVIRFMSLNKVGRYSFLP*RPRKAT
Trigger: CGTGGCCTTCCGTGGCCTCAAGGGCAAGAAACTATA...CCTCCCCACTTTATTCAGGGACATGAATCTGATGACTTGCCCTGGGGACAGAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
CDS TCA 72 bp GGAGCCGATGTCACGCAGGCGCTGTCGGCCCAGGGCTaGGCGGATGGATCGCCGGCACAGGTCCATCAGCGG +
Preference number: 6 (lower is better)
Translates to: GADVTQALSAQG*ADGSPAQVHQR
Trigger: CCGCTGATGGACCTGTGCCGGCGATCCATCCGCTCAGCCCTGGGCCGACAGCGCCTGCGTGACATCGGCTCC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
CDS GCA 72 bp CCCCGCTGCCTAGCGGGCCAATGGATCTGCCATGCGTaGAGACCCCGGGCATGGCCCACCTTGCCACGGATG +
Preference number: 6 (lower is better)
Translates to: PRCLAGQWICHA*RPRAWPTLPRM
Trigger: CATCCGTGGCAAGGTGGGCCATGCCCGGGGTCTGCACGCATGGCAGATCCATTGGCCCGCTAGGCAGCGGGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
CDS CCA 72 bp TGTCACGCAGGCGCTGTCGGCCCAGGGCTGAGCGGATaGATCGCCGGCACAGGTCCATCAGCGGCAGAGGCT +
Preference number: 6 (lower is better)
Translates to: CHAGAVGPGLSG*IAGTGPSAAEA
Trigger: AGCCTCTGCCGCTGATGGACCTGTGCCGGCGATCCATCCGCTCAGCCCTGGGCCGACAGCGCCTGCGTGACA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
CDS GCA 72 bp GCGGTCCTCGGGGTTCCACGCGTGTCTCAGCTGTACTaGCAACCCTGCCGCAGGCATGTCCAGCAGCTGGTC +
Preference number: 6 (lower is better)
Translates to: AVLGVPRVSQLY*QPCRRHVQQLV
Trigger: GACCAGCTGCTGGACATGCCTGCGGCAGGGTTGGCAGTACAGCTGAGACACGCGTGGAACCCCGAGGACCGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
CDS CCA 72 bp GCATGGCCCACCTTGCCACGGATGCCATCTGTGCTCTaGGCTACTGGGTGCCGGTGGAAGGTGAGGCGGTCG +
Preference number: 6 (lower is better)
Translates to: AWPTLPRMPSVL*ATGCRWKVRRS
Trigger: CGACCGCCTCACCTTCCACCGGCACCCAGTAGCCCAGAGCACAGATGGCATCCGTGGCAAGGTGGGCCATGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
CDS CAA 90 bp GGGTGCCGGTGGAAGGTGAGGCGGTCGTCATCCTTGACAAAGACATaGAGGGAGCGGTCCTCGGGGTTCCACGCGTGTCTCAGCTGTACT +
Preference number: 6 (lower is better)
Translates to: GCRWKVRRSSSLTKT*RERSSGFHACLSCT
Trigger: AGTACAGCTGAGACACGCGTGGAACCCCGAGGACCGCTCCCTCAATGTCTTTGTCAAGGATGACGACCGCCTCACCTTCCACCGGCACCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
CDS CAA 72 bp CACACAGCACTCACCACCGGGTATAGTTTCTTGCCCTaGAGGCCACGGAAGGCCACGCCCAGGTACTGGCCA +
Preference number: 6 (lower is better)
Translates to: HTALTTGYSFLP*RPRKATPRYWP
Trigger: TGGCCAGTACCTGGGCGTGGCCTTCCGTGGCCTCAAGGGCAAGAAACTATACCCGGTGGTGAGTGCTGTGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
CDS TCA 72 bp ACACAGCACTCACCACCGGGTATAGTTTCTTGCCCTTaGGGCCACGGAAGGCCACGCCCAGGTACTGGCCAT +
Preference number: 6 (lower is better)
Translates to: TQHSPPGIVSCP*GHGRPRPGTGH
Trigger: ATGGCCAGTACCTGGGCGTGGCCTTCCGTGGCCTCAAGGGCAAGAAACTATACCCGGTGGTGAGTGCTGTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5
CDS CAA 72 bp TGGAAGGTGAGGCGGTCGTCATCCTTGACAAAGACATaGAGGGAGCGGTCCTCGGGGTTCCACGCGTGTCTC +
Preference number: 6 (lower is better)
Translates to: WKVRRSSSLTKT*RERSSGFHACL
Trigger: GAGACACGCGTGGAACCCCGAGGACCGCTCCCTCAATGTCTTTGTCAAGGATGACGACCGCCTCACCTTCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055433.5