Pregenerated sensors for SPSB2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038451Ensembl transcript IDs: ENSMUST00000047760.10, ENSMUST00000052727.5, ENSMUST00000112473.2, ENSMUST00000130160.2, ENSMUST00000143040.8
Found 90 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TTGTCTAGGCCAGCGGGTGCCTCTCCACCTGTCCCCACGGTAGGGTaGCAGCACACCCTGTACTACTGGGTCATTTGTAGAGCAGATAGC | + |
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Preference number: 1 (lower is better) Translates to: LSRPAGASPPVPTVG*QHTLYYWVICRADS Trigger: GCTATCTGCTCTACAAATGACCCAGTAGTACAGGGTGTGCTGGCACCCTACCGTGGGGACAGGTGGAGAGGCACCCGCTGGCCTAGACAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112473.2 |
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| 3UTR CCA 90 bp | TCTCCACCTGTCCCCACGGTAGGGTGCCAGCACACCCTGTACTACTaGGTCATTTGTAGAGCAGATAGCGCTTCATGGCAGGGGGCAAAG | + |
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Preference number: 1 (lower is better) Translates to: SPPVPTVGCQHTLYY*VICRADSASWQGAK Trigger: CTTTGCCCCCTGCCATGAAGCGCTATCTGCTCTACAAATGACCCAGTAGTACAGGGTGTGCTGGCACCCTACCGTGGGGACAGGTGGAGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000112473.2 |
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| 3UTR CCA 90 bp | CACACCCTGTACTACTGGGTCATTTGTAGAGCAGATAGCGCTTCATaGCAGGGGGCAAAGGCAGAGTGGATATTTGACCCAGCCGGGTGT | + |
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Preference number: 1 (lower is better) Translates to: HTLYYWVICRADSAS*QGAKAEWIFDPAGC Trigger: ACACCCGGCTGGGTCAAATATCCACTCTGCCTTTGCCCCCTGCCATGAAGCGCTATCTGCTCTACAAATGACCCAGTAGTACAGGGTGTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000112473.2 |
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| 3UTR GCA 90 bp | GACAAGGTAAGTAAGCAACTCCAGGCATCCTTGAACTTGAGATCCTaGTCAGGCACCCTTCCTTCTTCCTCCATTTCCACCGCCACCTCA | + |
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Preference number: 1 (lower is better) Translates to: DKVSKQLQASLNLRS*SGTLPSSSISTATS Trigger: TGAGGTGGCGGTGGAAATGGAGGAAGAAGGAAGGGTGCCTGAGCAGGATCTCAAGTTCAAGGATGCCTGGAGTTGCTTACTTACCTTGTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112473.2 |
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| 3UTR CAA 90 bp | GAGCAGATAGCGCTTCATGGCAGGGGGCAAAGGCAGAGTGGATATTaGACCCAGCCGGGTGTCCCCCAGAGCATGGCGCACACACAGGCG | + |
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Preference number: 2 (lower is better) Translates to: EQIALHGRGQRQSGY*TQPGVPQSMAHTQA Trigger: CGCCTGTGTGTGCGCCATGCTCTGGGGGACACCCGGCTGGGTCAAATATCCACTCTGCCTTTGCCCCCTGCCATGAAGCGCTATCTGCTC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000112473.2 |
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| 3UTR-3UTR TCA 90 bp | TTAAAGTTGTCTAGGCCAGCGGGTGCCTCTCCACCTGTCCCCACGGTAGGGTGCTATGTCTTGCTCCTGTaGGAAGGGGAGGTGAAGGGG | + |
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Preference number: 2 (lower is better) Translates to: LKLSRPAGASPPVPTVGCYVLLL*EGEVKG Trigger: CCCCTTCACCTCCCCTTCTCACAGGAGCAAGACATA...GCACCCTACCGTGGGGACAGGTGGAGAGGCACCCGCTGGCCTAGACAACTTTAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 ENSMUST00000112473.2 |
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| 3UTR-3UTR TCA 90 bp | TGCCAGCACACCCTGTACTACTGGGTCATTTGTAGAGCAGATAGCGCTTCATGGCACCGCCACCTCAGCTaGGGGAGACCCAAAGGCTCT | + |
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Preference number: 2 (lower is better) Translates to: CQHTLYYWVICRADSASWHRHLS*GRPKGS Trigger: AGAGCCTTTGGGTCTCCCTCAGCTGAGGTGGCGGTG...CCATGAAGCGCTATCTGCTCTACAAATGACCCAGTAGTACAGGGTGTGCTGGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112473.2 |
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| 3UTR-3UTR TCA 90 bp | AGCTTTTTAAAGTTGTCTAGGCCAGCGGGTGCCTCTCCACCTGTCCCCACGGTATATGTCTTGCTCCTGTaGGAAGGGGAGGTGAAGGGG | + |
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Preference number: 2 (lower is better) Translates to: SFLKLSRPAGASPPVPTVYVLLL*EGEVKG Trigger: CCCCTTCACCTCCCCTTCTCACAGGAGCAAGACATA...TACCGTGGGGACAGGTGGAGAGGCACCCGCTGGCCTAGACAACTTTAAAAAGCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 ENSMUST00000112473.2 |
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| 3UTR-3UTR TCA 90 bp | TACTACTGGGTCATTTGTAGAGCAGATAGCGCTTCATGGCAGGGGGCAAAGGCATATGTCTTGCTCCTGTaGGAAGGGGAGGTGAAGGGG | + |
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Preference number: 2 (lower is better) Translates to: YYWVICRADSASWQGAKAYVLLL*EGEVKG Trigger: CCCCTTCACCTCCCCTTCTCACAGGAGCAAGACATA...TGCCTTTGCCCCCTGCCATGAAGCGCTATCTGCTCTACAAATGACCCAGTAGTA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000112473.2 |
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| 3UTR CAA 90 bp | GAGAAGGAAGACAAGGTAAGTAAGCAACTCCAGGCATCCTTGAACTaGAGATCCTGCTCAGGCACCCTTCCTTCTTCCTCCATTTCCACC | + |
|
Preference number: 2 (lower is better) Translates to: EKEDKVSKQLQASLN*RSCSGTLPSSSIST Trigger: GGTGGAAATGGAGGAAGAAGGAAGGGTGCCTGAGCAGGATCTCAAGTTCAAGGATGCCTGGAGTTGCTTACTTACCTTGTCTTCCTTCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112473.2 |
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| 3UTR GCA 72 bp | CCAGCGGGTGCCTCTCCACCTGTCCCCACGGTAGGGTaGCAGCACACCCTGTACTACTGGGTCATTTGTAGA | + |
|
Preference number: 3 (lower is better) Translates to: PAGASPPVPTVG*QHTLYYWVICR Trigger: TCTACAAATGACCCAGTAGTACAGGGTGTGCTGGCACCCTACCGTGGGGACAGGTGGAGAGGCACCCGCTGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112473.2 |
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| 3UTR CCA 72 bp | GCGCACACACAGGCGGCTCAGGTGCAGAAGGGATTGTaGTTCCTCCACTGCGGAGAGAGAAGGAAGACAAGG | + |
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Preference number: 3 (lower is better) Translates to: AHTQAAQVQKGL*FLHCGERRKTR Trigger: CCTTGTCTTCCTTCTCTCTCCGCAGTGGAGGAACCACAATCCCTTCTGCACCTGAGCCGCCTGTGTGTGCGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112473.2 |
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| 3UTR-3UTR CAA 90 bp | ACTGGGTCATTTGTAGAGCAGATAGCGCTTCATGGCAGGGGGCAAAGGCAGAGTCAGGTGCAGAAGGGATaGTGGTTCCTCCACTGCGGA | + |
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Preference number: 3 (lower is better) Translates to: TGSFVEQIALHGRGQRQSQVQKG*WFLHCG Trigger: TCCGCAGTGGAGGAACCACAATCCCTTCTGCACCTG...ACTCTGCCTTTGCCCCCTGCCATGAAGCGCTATCTGCTCTACAAATGACCCAGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000112473.2 |
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| 3UTR-3UTR CAA 90 bp | CTGTACTACTGGGTCATTTGTAGAGCAGATAGCGCTTCATGGCAGGGGGCAAAGCAGGCATCCTTGAACTaGAGATCCTGCTCAGGCACC | + |
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Preference number: 3 (lower is better) Translates to: LYYWVICRADSASWQGAKQASLN*RSCSGT Trigger: GGTGCCTGAGCAGGATCTCAAGTTCAAGGATGCCTG...CTTTGCCCCCTGCCATGAAGCGCTATCTGCTCTACAAATGACCCAGTAGTACAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000112473.2 |
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| 3UTR GCA 72 bp | AGTAAGCAACTCCAGGCATCCTTGAACTTGAGATCCTaGTCAGGCACCCTTCCTTCTTCCTCCATTTCCACC | + |
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Preference number: 3 (lower is better) Translates to: SKQLQASLNLRS*SGTLPSSSIST Trigger: GGTGGAAATGGAGGAAGAAGGAAGGGTGCCTGAGCAGGATCTCAAGTTCAAGGATGCCTGGAGTTGCTTACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112473.2 |
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| CDS-3UTR GCA 90 bp | CCAGCGGGTGCCTCTCCACCTGTCCCCACGGTAGGGTGCCAGCACACCCTGTACGCTGCTGCTGCCCCTTaGCAGGGCCGTCTGGCCCAT | + |
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Preference number: 4 (lower is better) Translates to: PAGASPPVPTVGCQHTLYAAAAP*QGRLAH Trigger: ATGGGCCAGACGGCCCTGGCAAGGGGCAGCAGCAGC...GTACAGGGTGTGCTGGCACCCTACCGTGGGGACAGGTGGAGAGGCACCCGCTGG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 ENSMUST00000112473.2 |
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| CDS-3UTR GCA 90 bp | GCCAGCGGGTGCCTCTCCACCTGTCCCCACGGTAGGGTGCCAGCACACCCTGTAGCTGCTGCTGCCCCTTaGCAGGGCCGTCTGGCCCAT | + |
|
Preference number: 4 (lower is better) Translates to: ASGCLSTCPHGRVPAHPVAAAAP*QGRLAH Trigger: ATGGGCCAGACGGCCCTGGCAAGGGGCAGCAGCAGC...TACAGGGTGTGCTGGCACCCTACCGTGGGGACAGGTGGAGAGGCACCCGCTGGC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 ENSMUST00000112473.2 |
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| CDS-3UTR GCA 90 bp | GCCAGCGGGTGCCTCTCCACCTGTCCCCACGGTAGGGTGCCAGCACACCCTGTACGCCCATGTAGCGGATaGGGACCTGGCACTGGCCCC | + |
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Preference number: 4 (lower is better) Translates to: ASGCLSTCPHGRVPAHPVRPCSG*GPGTGP Trigger: GGGGCCAGTGCCAGGTCCGCATCCGCTACATGGGCG...TACAGGGTGTGCTGGCACCCTACCGTGGGGACAGGTGGAGAGGCACCCGCTGGC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 ENSMUST00000112473.2 |
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| CDS-3UTR CCA 90 bp | GCCAGCGGGTGCCTCTCCACCTGTCCCCACGGTAGGGTGCCAGCACACCCTGTAGTGTCCCCCAGAGCATaGCGCACACACAGGCGGCTC | + |
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Preference number: 4 (lower is better) Translates to: ASGCLSTCPHGRVPAHPVVSPRA*RTHRRL Trigger: GAGCCGCCTGTGTGTGCGCCATGCTCTGGGGGACAC...TACAGGGTGTGCTGGCACCCTACCGTGGGGACAGGTGGAGAGGCACCCGCTGGC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 |
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| CDS-3UTR TCA 90 bp | GGTGCCTCTCCACCTGTCCCCACGGTAGGGTGCCAGCACACCCTGTACTACTGGGCTCCAGGGGCCAGCTaGTCTCCCAGGCGTGCAGAC | + |
|
Preference number: 4 (lower is better) Translates to: GASPPVPTVGCQHTLYYWAPGAS*SPRRAD Trigger: GTCTGCACGCCTGGGAGATCAGCTGGCCCCTGGAGC...CCAGTAGTACAGGGTGTGCTGGCACCCTACCGTGGGGACAGGTGGAGAGGCACC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 ENSMUST00000112473.2 |
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| CDS-3UTR GCA 90 bp | GGTGCCTCTCCACCTGTCCCCACGGTAGGGTGCCAGCACACCCTGTACTACTGGCCCGGACTCCATCAGTaGTCTGGGCCACAGGGCGCC | + |
|
Preference number: 4 (lower is better) Translates to: GASPPVPTVGCQHTLYYWPGLHQ*SGPQGA Trigger: GGCGCCCTGTGGCCCAGAGCACTGATGGAGTCCGGG...CCAGTAGTACAGGGTGTGCTGGCACCCTACCGTGGGGACAGGTGGAGAGGCACC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 ENSMUST00000112473.2 |
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| CDS-3UTR GCA 90 bp | GGTGCCTCTCCACCTGTCCCCACGGTAGGGTGCCAGCACACCCTGTACTACTGGCGCCCATGTAGCGGATaGGGACCTGGCACTGGCCCC | + |
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Preference number: 4 (lower is better) Translates to: GASPPVPTVGCQHTLYYWRPCSG*GPGTGP Trigger: GGGGCCAGTGCCAGGTCCGCATCCGCTACATGGGCG...CCAGTAGTACAGGGTGTGCTGGCACCCTACCGTGGGGACAGGTGGAGAGGCACC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 ENSMUST00000112473.2 |
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| CDS-3UTR CCA 90 bp | CCAGCGGGTGCCTCTCCACCTGTCCCCACGGTAGGGTGCCAGCACACCCTGTACACTCCATCAGTGCTCTaGGCCACAGGGCGCCGCTCA | + |
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Preference number: 4 (lower is better) Translates to: PAGASPPVPTVGCQHTLYTPSVL*ATGRRS Trigger: TGAGCGGCGCCCTGTGGCCCAGAGCACTGATGGAGT...GTACAGGGTGTGCTGGCACCCTACCGTGGGGACAGGTGGAGAGGCACCCGCTGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 ENSMUST00000112473.2 |
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| CDS-3UTR TCA 90 bp | CCCCAGAGCATGGCGCACACACAGGCGGCTCAGGTGCAGAAGGGATTGTGGTTCGCTCCAGGGGCCAGCTaGTCTCCCAGGCGTGCAGAC | + |
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Preference number: 4 (lower is better) Translates to: PQSMAHTQAAQVQKGLWFAPGAS*SPRRAD Trigger: GTCTGCACGCCTGGGAGATCAGCTGGCCCCTGGAGC...GAACCACAATCCCTTCTGCACCTGAGCCGCCTGTGTGTGCGCCATGCTCTGGGG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112473.2 |
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| CDS-3UTR GCA 90 bp | CCCCAGAGCATGGCGCACACACAGGCGGCTCAGGTGCAGAAGGGATTGTGGTTCCCACCACGGCGTGTGTaGCCCTTTGCTCCAGGGGCC | + |
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Preference number: 4 (lower is better) Translates to: PQSMAHTQAAQVQKGLWFPPRRV*PFAPGA Trigger: GGCCCCTGGAGCAAAGGGGCACACACGCCGTGGTGG...GAACCACAATCCCTTCTGCACCTGAGCCGCCTGTGTGTGCGCCATGCTCTGGGG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112473.2 |
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| CDS-3UTR GCA 90 bp | CCAGCGGGTGCCTCTCCACCTGTCCCCACGGTAGGGTGCCAGCACACCCTGTACCCCAGGACTCGCTGTTaGTGCCCAAAAGCGCCGCAT | + |
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Preference number: 4 (lower is better) Translates to: PAGASPPVPTVGCQHTLYPRTRC*CPKAPH Trigger: ATGCGGCGCTTTTGGGCAGCAACAGCGAGTCCTGGG...GTACAGGGTGTGCTGGCACCCTACCGTGGGGACAGGTGGAGAGGCACCCGCTGG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 ENSMUST00000112473.2 |
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| CDS-3UTR GCA 90 bp | CCCCAGAGCATGGCGCACACACAGGCGGCTCAGGTGCAGAAGGGATTGTGGTTCCGCCCATGTAGCGGATaGGGACCTGGCACTGGCCCC | + |
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Preference number: 4 (lower is better) Translates to: PQSMAHTQAAQVQKGLWFRPCSG*GPGTGP Trigger: GGGGCCAGTGCCAGGTCCGCATCCGCTACATGGGCG...GAACCACAATCCCTTCTGCACCTGAGCCGCCTGTGTGTGCGCCATGCTCTGGGG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112473.2 |
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| CDS-3UTR TCA 90 bp | TTAAAGTTGTCTAGGCCAGCGGGTGCCTCTCCACCTGTCCCCACGGTAGGGTGCGCTCCAGGGGCCAGCTaGTCTCCCAGGCGTGCAGAC | + |
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Preference number: 4 (lower is better) Translates to: LKLSRPAGASPPVPTVGCAPGAS*SPRRAD Trigger: GTCTGCACGCCTGGGAGATCAGCTGGCCCCTGGAGC...GCACCCTACCGTGGGGACAGGTGGAGAGGCACCCGCTGGCCTAGACAACTTTAA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 ENSMUST00000112473.2 |
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| CDS-3UTR TCA 90 bp | CCAGCGGGTGCCTCTCCACCTGTCCCCACGGTAGGGTGCCAGCACACCCTGTACACTAGCTGCTCACCCTaGGGTCCAGCTGGATACTGG | + |
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Preference number: 4 (lower is better) Translates to: PAGASPPVPTVGCQHTLYTSCSP*GPAGYW Trigger: CCAGTATCCAGCTGGACCTCAGGGTGAGCAGCTAGT...GTACAGGGTGTGCTGGCACCCTACCGTGGGGACAGGTGGAGAGGCACCCGCTGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 ENSMUST00000112473.2 |
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| CDS-3UTR GCA 90 bp | TTAAAGTTGTCTAGGCCAGCGGGTGCCTCTCCACCTGTCCCCACGGTAGGGTGCCCACCACGGCGTGTGTaGCCCTTTGCTCCAGGGGCC | + |
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Preference number: 4 (lower is better) Translates to: LKLSRPAGASPPVPTVGCPPRRV*PFAPGA Trigger: GGCCCCTGGAGCAAAGGGGCACACACGCCGTGGTGG...GCACCCTACCGTGGGGACAGGTGGAGAGGCACCCGCTGGCCTAGACAACTTTAA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 ENSMUST00000112473.2 |
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| CDS-3UTR CCA 90 bp | GGTGCCTCTCCACCTGTCCCCACGGTAGGGTGCCAGCACACCCTGTACTACTGGTTGGGGTTCCAGCCGTaGTGCCGTTGGGCAACCAGG | + |
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Preference number: 4 (lower is better) Translates to: GASPPVPTVGCQHTLYYWLGFQP*CRWATR Trigger: CCTGGTTGCCCAACGGCACCACGGCTGGAACCCCAA...CCAGTAGTACAGGGTGTGCTGGCACCCTACCGTGGGGACAGGTGGAGAGGCACC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 ENSMUST00000112473.2 |
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| CDS-3UTR CCA 90 bp | GCCAGCGGGTGCCTCTCCACCTGTCCCCACGGTAGGGTGCCAGCACACCCTGTAGGGGCAAAGGCAGAGTaGATATTTGACCCAGCCGGG | + |
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Preference number: 4 (lower is better) Translates to: ASGCLSTCPHGRVPAHPVGAKAE*IFDPAG Trigger: CCCGGCTGGGTCAAATATCCACTCTGCCTTTGCCCC...TACAGGGTGTGCTGGCACCCTACCGTGGGGACAGGTGGAGAGGCACCCGCTGGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 |
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| CDS-3UTR CCA 90 bp | CCAGCGGGTGCCTCTCCACCTGTCCCCACGGTAGGGTGCCAGCACACCCTGTACGCAGATAGCGCTTCATaGCAGGGGGCAAAGGCAGAG | + |
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Preference number: 4 (lower is better) Translates to: PAGASPPVPTVGCQHTLYADSAS*QGAKAE Trigger: CTCTGCCTTTGCCCCCTGCCATGAAGCGCTATCTGC...GTACAGGGTGTGCTGGCACCCTACCGTGGGGACAGGTGGAGAGGCACCCGCTGG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 |
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| CDS-3UTR CCA 90 bp | TCTAGGCCAGCGGGTGCCTCTCCACCTGTCCCCACGGTAGGGTGCCAGCACACCGCAGATAGCGCTTCATaGCAGGGGGCAAAGGCAGAG | + |
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Preference number: 4 (lower is better) Translates to: SRPAGASPPVPTVGCQHTADSAS*QGAKAE Trigger: CTCTGCCTTTGCCCCCTGCCATGAAGCGCTATCTGC...GGTGTGCTGGCACCCTACCGTGGGGACAGGTGGAGAGGCACCCGCTGGCCTAGA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 |
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| CDS-3UTR GCA 90 bp | TCTAGGCCAGCGGGTGCCTCTCCACCTGTCCCCACGGTAGGGTGCCAGCACACCAGGACTCGCTGTTGCTaGCCAAAAGCGCCGCATAGT | + |
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Preference number: 4 (lower is better) Translates to: SRPAGASPPVPTVGCQHTRTRCC*PKAPHS Trigger: ACTATGCGGCGCTTTTGGGCAGCAACAGCGAGTCCT...GGTGTGCTGGCACCCTACCGTGGGGACAGGTGGAGAGGCACCCGCTGGCCTAGA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 ENSMUST00000112473.2 |
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| CDS-3UTR GCA 90 bp | GGTGCCTCTCCACCTGTCCCCACGGTAGGGTGCCAGCACACCCTGTACTACTGGCCCAGGACTCGCTGTTaGTGCCCAAAAGCGCCGCAT | + |
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Preference number: 4 (lower is better) Translates to: GASPPVPTVGCQHTLYYWPRTRC*CPKAPH Trigger: ATGCGGCGCTTTTGGGCAGCAACAGCGAGTCCTGGG...CCAGTAGTACAGGGTGTGCTGGCACCCTACCGTGGGGACAGGTGGAGAGGCACC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 ENSMUST00000112473.2 |
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| CDS-3UTR CCA 90 bp | GGGCAAAGGCAGAGTGGATATTTGACCCAGCCGGGTGTCCCCCAGAGCATGGCGACTCCATCAGTGCTCTaGGCCACAGGGCGCCGCTCA | + |
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Preference number: 4 (lower is better) Translates to: GQRQSGYLTQPGVPQSMATPSVL*ATGRRS Trigger: TGAGCGGCGCCCTGTGGCCCAGAGCACTGATGGAGT...CGCCATGCTCTGGGGGACACCCGGCTGGGTCAAATATCCACTCTGCCTTTGCCC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000112473.2 |
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| CDS-3UTR CCA 90 bp | TTAAAGTTGTCTAGGCCAGCGGGTGCCTCTCCACCTGTCCCCACGGTAGGGTGCTTGGGGTTCCAGCCGTaGTGCCGTTGGGCAACCAGG | + |
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Preference number: 4 (lower is better) Translates to: LKLSRPAGASPPVPTVGCLGFQP*CRWATR Trigger: CCTGGTTGCCCAACGGCACCACGGCTGGAACCCCAA...GCACCCTACCGTGGGGACAGGTGGAGAGGCACCCGCTGGCCTAGACAACTTTAA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 ENSMUST00000112473.2 |
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| CDS-3UTR TCA 90 bp | GGTGCCTCTCCACCTGTCCCCACGGTAGGGTGCCAGCACACCCTGTACTACTGGACAGACCCCCTTCCTTaGCATCGATGTTCTCGGAGC | + |
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Preference number: 4 (lower is better) Translates to: GASPPVPTVGCQHTLYYWTDPLP*HRCSRS Trigger: GCTCCGAGAACATCGATGTCAAGGAAGGGGGTCTGT...CCAGTAGTACAGGGTGTGCTGGCACCCTACCGTGGGGACAGGTGGAGAGGCACC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 ENSMUST00000112473.2 |
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| CDS-3UTR GCA 90 bp | TTCACCAGCTTTTTAAAGTTGTCTAGGCCAGCGGGTGCCTCTCCACCTGTCCCCGCTGCTGCTGCCCCTTaGCAGGGCCGTCTGGCCCAT | + |
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Preference number: 4 (lower is better) Translates to: FTSFLKLSRPAGASPPVPAAAAP*QGRLAH Trigger: ATGGGCCAGACGGCCCTGGCAAGGGGCAGCAGCAGC...GGGGACAGGTGGAGAGGCACCCGCTGGCCTAGACAACTTTAAAAAGCTGGTGAA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 ENSMUST00000112473.2 |
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| CDS-3UTR TCA 90 bp | AGCTTTTTAAAGTTGTCTAGGCCAGCGGGTGCCTCTCCACCTGTCCCCACGGTAGGCAGAGTGGATATTTaGCCCAGCCGGGTGTCCCCC | + |
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Preference number: 4 (lower is better) Translates to: SFLKLSRPAGASPPVPTVGRVDI*PSRVSP Trigger: GGGGGACACCCGGCTGGGTCAAATATCCACTCTGCC...TACCGTGGGGACAGGTGGAGAGGCACCCGCTGGCCTAGACAACTTTAAAAAGCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 |
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| CDS-3UTR GCA 90 bp | ACTGGGTCATTTGTAGAGCAGATAGCGCTTCATGGCAGGGGGCAAAGGCAGAGTGCGTGTGTGCCCCTTTaGTCCAGGGGCCAGCTGATC | + |
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Preference number: 4 (lower is better) Translates to: TGSFVEQIALHGRGQRQSACVPL*SRGQLI Trigger: GATCAGCTGGCCCCTGGAGCAAAGGGGCACACACGC...ACTCTGCCTTTGCCCCCTGCCATGAAGCGCTATCTGCTCTACAAATGACCCAGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000112473.2 |
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| CDS-3UTR GCA 90 bp | AGCTTTTTAAAGTTGTCTAGGCCAGCGGGTGCCTCTCCACCTGTCCCCACGGTACCCAGGACTCGCTGTTaGTGCCCAAAAGCGCCGCAT | + |
|
Preference number: 4 (lower is better) Translates to: SFLKLSRPAGASPPVPTVPRTRC*CPKAPH Trigger: ATGCGGCGCTTTTGGGCAGCAACAGCGAGTCCTGGG...TACCGTGGGGACAGGTGGAGAGGCACCCGCTGGCCTAGACAACTTTAAAAAGCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 ENSMUST00000112473.2 |
||
| CDS-3UTR CCA 90 bp | TACTACTGGGTCATTTGTAGAGCAGATAGCGCTTCATGGCAGGGGGCAAAGGCACAGCCGTGGTGCCGTTaGGCAACCAGGTCAGGAGGG | + |
|
Preference number: 4 (lower is better) Translates to: YYWVICRADSASWQGAKAQPWCR*ATRSGG Trigger: CCCTCCTGACCTGGTTGCCCAACGGCACCACGGCTG...TGCCTTTGCCCCCTGCCATGAAGCGCTATCTGCTCTACAAATGACCCAGTAGTA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000112473.2 |
||
| 3UTR CAA 72 bp | ATGGCGCACACACAGGCGGCTCAGGTGCAGAAGGGATaGTGGTTCCTCCACTGCGGAGAGAGAAGGAAGACA | + |
|
Preference number: 4 (lower is better) Translates to: MAHTQAAQVQKG*WFLHCGERRKT Trigger: TGTCTTCCTTCTCTCTCCGCAGTGGAGGAACCACAATCCCTTCTGCACCTGAGCCGCCTGTGTGTGCGCCAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112473.2 |
||
| CDS-3UTR GCA 90 bp | AATATCATTTCTATATGTCTTGCTCCTGTGAGAAGGGGAGGTGAAGGGGTCCAGCCCGGACTCCATCAGTaGTCTGGGCCACAGGGCGCC | + |
|
Preference number: 4 (lower is better) Translates to: NIISICLAPVRRGGEGVQPGLHQ*SGPQGA Trigger: GGCGCCCTGTGGCCCAGAGCACTGATGGAGTCCGGG...CTGGACCCCTTCACCTCCCCTTCTCACAGGAGCAAGACATATAGAAATGATATT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 ENSMUST00000112473.2 |
||
| CDS-3UTR GCA 90 bp | AATATCATTTCTATATGTCTTGCTCCTGTGAGAAGGGGAGGTGAAGGGGTCCAGCCACCACGGCGTGTGTaGCCCTTTGCTCCAGGGGCC | + |
|
Preference number: 4 (lower is better) Translates to: NIISICLAPVRRGGEGVQPPRRV*PFAPGA Trigger: GGCCCCTGGAGCAAAGGGGCACACACGCCGTGGTGG...CTGGACCCCTTCACCTCCCCTTCTCACAGGAGCAAGACATATAGAAATGATATT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 ENSMUST00000112473.2 |
||
| CDS-3UTR GCA 90 bp | TTCACCAGCTTTTTAAAGTTGTCTAGGCCAGCGGGTGCCTCTCCACCTGTCCCCAGGACTCGCTGTTGCTaGCCAAAAGCGCCGCATAGT | + |
|
Preference number: 4 (lower is better) Translates to: FTSFLKLSRPAGASPPVPRTRCC*PKAPHS Trigger: ACTATGCGGCGCTTTTGGGCAGCAACAGCGAGTCCT...GGGGACAGGTGGAGAGGCACCCGCTGGCCTAGACAACTTTAAAAAGCTGGTGAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 ENSMUST00000112473.2 |
||
| CDS-3UTR CCA 90 bp | TTCACCAGCTTTTTAAAGTTGTCTAGGCCAGCGGGTGCCTCTCCACCTGTCCCCATGCGGACCTGGCACTaGCCCCAAACAGCACTTACA | + |
|
Preference number: 4 (lower is better) Translates to: FTSFLKLSRPAGASPPVPMRTWH*PQTALT Trigger: TGTAAGTGCTGTTTGGGGCCAGTGCCAGGTCCGCAT...GGGGACAGGTGGAGAGGCACCCGCTGGCCTAGACAACTTTAAAAAGCTGGTGAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 ENSMUST00000112473.2 |
||
| CDS-3UTR TCA 90 bp | TGCCAGCACACCCTGTACTACTGGGTCATTTGTAGAGCAGATAGCGCTTCATGGACTAGCTGCTCACCCTaGGGTCCAGCTGGATACTGG | + |
|
Preference number: 4 (lower is better) Translates to: CQHTLYYWVICRADSASWTSCSP*GPAGYW Trigger: CCAGTATCCAGCTGGACCTCAGGGTGAGCAGCTAGT...CCATGAAGCGCTATCTGCTCTACAAATGACCCAGTAGTACAGGGTGTGCTGGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112473.2 |
||
| CDS-3UTR CCA 90 bp | AATATCATTTCTATATGTCTTGCTCCTGTGAGAAGGGGAGGTGAAGGGGTCCAGCAGCCGTGGTGCCGTTaGGCAACCAGGTCAGGAGGG | + |
|
Preference number: 4 (lower is better) Translates to: NIISICLAPVRRGGEGVQQPWCR*ATRSGG Trigger: CCCTCCTGACCTGGTTGCCCAACGGCACCACGGCTG...CTGGACCCCTTCACCTCCCCTTCTCACAGGAGCAAGACATATAGAAATGATATT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 ENSMUST00000112473.2 |
||
| CDS-3UTR TCA 90 bp | AATATCATTTCTATATGTCTTGCTCCTGTGAGAAGGGGAGGTGAAGGGGTCCAGGGCAGAGTGGATATTTaGCCCAGCCGGGTGTCCCCC | + |
|
Preference number: 4 (lower is better) Translates to: NIISICLAPVRRGGEGVQGRVDI*PSRVSP Trigger: GGGGGACACCCGGCTGGGTCAAATATCCACTCTGCC...CTGGACCCCTTCACCTCCCCTTCTCACAGGAGCAAGACATATAGAAATGATATT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 |
||
| CDS-3UTR GCA 90 bp | TACTACTGGGTCATTTGTAGAGCAGATAGCGCTTCATGGCAGGGGGCAAAGGCAAGGACTCGCTGTTGCTaGCCAAAAGCGCCGCATAGT | + |
|
Preference number: 4 (lower is better) Translates to: YYWVICRADSASWQGAKARTRCC*PKAPHS Trigger: ACTATGCGGCGCTTTTGGGCAGCAACAGCGAGTCCT...TGCCTTTGCCCCCTGCCATGAAGCGCTATCTGCTCTACAAATGACCCAGTAGTA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000112473.2 |
||
| CDS-3UTR CCA 90 bp | AATATCATTTCTATATGTCTTGCTCCTGTGAGAAGGGGAGGTGAAGGGGTCCAGACTCCATCAGTGCTCTaGGCCACAGGGCGCCGCTCA | + |
|
Preference number: 4 (lower is better) Translates to: NIISICLAPVRRGGEGVQTPSVL*ATGRRS Trigger: TGAGCGGCGCCCTGTGGCCCAGAGCACTGATGGAGT...CTGGACCCCTTCACCTCCCCTTCTCACAGGAGCAAGACATATAGAAATGATATT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 ENSMUST00000112473.2 |
||
| CDS-3UTR TCA 90 bp | ACTGGGTCATTTGTAGAGCAGATAGCGCTTCATGGCAGGGGGCAAAGGCAGAGTAGTGACAGGCCAAAGTaGCAAGAAGCCTACTTCCTG | + |
|
Preference number: 4 (lower is better) Translates to: TGSFVEQIALHGRGQRQSSDRPK*QEAYFL Trigger: CAGGAAGTAGGCTTCTTGTCACTTTGGCCTGTCACT...ACTCTGCCTTTGCCCCCTGCCATGAAGCGCTATCTGCTCTACAAATGACCCAGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000112473.2 |
||
| CDS-3UTR CCA 90 bp | TTTAATATCATTTCTATATGTCTTGCTCCTGTGAGAAGGGGAGGTGAAGGGGTCCAGCCGTGGTGCCGTTaGGCAACCAGGTCAGGAGGG | + |
|
Preference number: 4 (lower is better) Translates to: FNIISICLAPVRRGGEGVQPWCR*ATRSGG Trigger: CCCTCCTGACCTGGTTGCCCAACGGCACCACGGCTG...GACCCCTTCACCTCCCCTTCTCACAGGAGCAAGACATATAGAAATGATATTAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 ENSMUST00000112473.2 |
||
| CDS-3UTR CCA 90 bp | TTTAATATCATTTCTATATGTCTTGCTCCTGTGAGAAGGGGAGGTGAAGGGGTCGTGTCCCCCAGAGCATaGCGCACACACAGGCGGCTC | + |
|
Preference number: 4 (lower is better) Translates to: FNIISICLAPVRRGGEGVVSPRA*RTHRRL Trigger: GAGCCGCCTGTGTGTGCGCCATGCTCTGGGGGACAC...GACCCCTTCACCTCCCCTTCTCACAGGAGCAAGACATATAGAAATGATATTAAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 |
||
| CDS-3UTR GCA 90 bp | TTTAATATCATTTCTATATGTCTTGCTCCTGTGAGAAGGGGAGGTGAAGGGGTCGCGTGTGTGCCCCTTTaGTCCAGGGGCCAGCTGATC | + |
|
Preference number: 4 (lower is better) Translates to: FNIISICLAPVRRGGEGVACVPL*SRGQLI Trigger: GATCAGCTGGCCCCTGGAGCAAAGGGGCACACACGC...GACCCCTTCACCTCCCCTTCTCACAGGAGCAAGACATATAGAAATGATATTAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 3 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 ENSMUST00000112473.2 |
||
| CDS-3UTR CCA 90 bp | AATATCATTTCTATATGTCTTGCTCCTGTGAGAAGGGGAGGTGAAGGGGTCCAGGGGGCAAAGGCAGAGTaGATATTTGACCCAGCCGGG | + |
|
Preference number: 4 (lower is better) Translates to: NIISICLAPVRRGGEGVQGAKAE*IFDPAG Trigger: CCCGGCTGGGTCAAATATCCACTCTGCCTTTGCCCC...CTGGACCCCTTCACCTCCCCTTCTCACAGGAGCAAGACATATAGAAATGATATT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 |
||
| 3UTR CAA 72 bp | GACAAGGTAAGTAAGCAACTCCAGGCATCCTTGAACTaGAGATCCTGCTCAGGCACCCTTCCTTCTTCCTCC | + |
|
Preference number: 4 (lower is better) Translates to: DKVSKQLQASLN*RSCSGTLPSSS Trigger: GGAGGAAGAAGGAAGGGTGCCTGAGCAGGATCTCAAGTTCAAGGATGCCTGGAGTTGCTTACTTACCTTGTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112473.2 |
||
| CDS-3UTR TCA 90 bp | TTTAATATCATTTCTATATGTCTTGCTCCTGTGAGAAGGGGAGGTGAAGGGGTCACTAGCTGCTCACCCTaGGGTCCAGCTGGATACTGG | + |
|
Preference number: 4 (lower is better) Translates to: FNIISICLAPVRRGGEGVTSCSP*GPAGYW Trigger: CCAGTATCCAGCTGGACCTCAGGGTGAGCAGCTAGT...GACCCCTTCACCTCCCCTTCTCACAGGAGCAAGACATATAGAAATGATATTAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 ENSMUST00000112473.2 |
||
| 3UTR CAA 72 bp | AAGGAAGACAAGGTAAGTAAGCAACTCCAGGCATCCTaGAACTTGAGATCCTGCTCAGGCACCCTTCCTTCT | + |
|
Preference number: 4 (lower is better) Translates to: KEDKVSKQLQAS*NLRSCSGTLPS Trigger: AGAAGGAAGGGTGCCTGAGCAGGATCTCAAGTTCAAGGATGCCTGGAGTTGCTTACTTACCTTGTCTTCCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112473.2 |
||
| CDS-3UTR TCA 90 bp | TTTAATATCATTTCTATATGTCTTGCTCCTGTGAGAAGGGGAGGTGAAGGGGTCACAGACCCCCTTCCTTaGCATCGATGTTCTCGGAGC | + |
|
Preference number: 4 (lower is better) Translates to: FNIISICLAPVRRGGEGVTDPLP*HRCSRS Trigger: GCTCCGAGAACATCGATGTCAAGGAAGGGGGTCTGT...GACCCCTTCACCTCCCCTTCTCACAGGAGCAAGACATATAGAAATGATATTAAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 ENSMUST00000112473.2 |
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| CDS-3UTR CAA 90 bp | GCCAGCGGGTGCCTCTCCACCTGTCCCCACGGTAGGGTGCCAGCACACCCTGTAGGCGTGTGTGCCCCTTaGCTCCAGGGGCCAGCTGAT | + |
|
Preference number: 5 (lower is better) Translates to: ASGCLSTCPHGRVPAHPVGVCAP*LQGPAD Trigger: ATCAGCTGGCCCCTGGAGCAAAGGGGCACACACGCC...TACAGGGTGTGCTGGCACCCTACCGTGGGGACAGGTGGAGAGGCACCCGCTGGC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 ENSMUST00000112473.2 |
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| CDS-3UTR CAA 90 bp | CCAGCGGGTGCCTCTCCACCTGTCCCCACGGTAGGGTGCCAGCACACCCTGTACAGGCAGAGTGGATATTaGACCCAGCCGGGTGTCCCC | + |
|
Preference number: 5 (lower is better) Translates to: PAGASPPVPTVGCQHTLYRQSGY*TQPGVP Trigger: GGGGACACCCGGCTGGGTCAAATATCCACTCTGCCT...GTACAGGGTGTGCTGGCACCCTACCGTGGGGACAGGTGGAGAGGCACCCGCTGG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 |
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| CDS-3UTR CAA 90 bp | TTAAAGTTGTCTAGGCCAGCGGGTGCCTCTCCACCTGTCCCCACGGTAGGGTGCCCAGCCGTGGTGCCGTaGGGCAACCAGGTCAGGAGG | + |
|
Preference number: 5 (lower is better) Translates to: LKLSRPAGASPPVPTVGCPAVVP*GNQVRR Trigger: CCTCCTGACCTGGTTGCCCAACGGCACCACGGCTGG...GCACCCTACCGTGGGGACAGGTGGAGAGGCACCCGCTGGCCTAGACAACTTTAA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 ENSMUST00000112473.2 |
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| CDS-3UTR CAA 90 bp | GGTGCCTCTCCACCTGTCCCCACGGTAGGGTGCCAGCACACCCTGTACTACTGGAGGCAGAGTGGATATTaGACCCAGCCGGGTGTCCCC | + |
|
Preference number: 5 (lower is better) Translates to: GASPPVPTVGCQHTLYYWRQSGY*TQPGVP Trigger: GGGGACACCCGGCTGGGTCAAATATCCACTCTGCCT...CCAGTAGTACAGGGTGTGCTGGCACCCTACCGTGGGGACAGGTGGAGAGGCACC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 |
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| CDS TCA 90 bp | TGCTCTGGGCCACAGGGCGCCGCTCAAAGCACAGACCCCCTTCCTTaGCATCGATGTTCTCGGAGCAATCCTTGGGGTTCCAGCCGTGGT | + |
|
Preference number: 5 (lower is better) Translates to: CSGPQGAAQSTDPLP*HRCSRSNPWGSSRG Trigger: ACCACGGCTGGAACCCCAAGGATTGCTCCGAGAACATCGATGTCAAGGAAGGGGGTCTGTGCTTTGAGCGGCGCCCTGTGGCCCAGAGCA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 ENSMUST00000112473.2 ENSMUST00000130160.2 ENSMUST00000143040.8 |
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| CDS GCA 90 bp | TTGACATCGATGTTCTCGGAGCAATCCTTGGGGTTCCAGCCGTGGTaGCGTTGGGCAACCAGGTCAGGAGGGGGAGCAGACAGGAGCTCC | + |
|
Preference number: 5 (lower is better) Translates to: LTSMFSEQSLGFQPW*RWATRSGGGADRSS Trigger: GGAGCTCCTGTCTGCTCCCCCTCCTGACCTGGTTGCCCAACGGCACCACGGCTGGAACCCCAAGGATTGCTCCGAGAACATCGATGTCAA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 ENSMUST00000112473.2 ENSMUST00000130160.2 ENSMUST00000143040.8 |
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| CDS CCA 90 bp | TCCTTGACATCGATGTTCTCGGAGCAATCCTTGGGGTTCCAGCCGTaGTGCCGTTGGGCAACCAGGTCAGGAGGGGGAGCAGACAGGAGC | + |
|
Preference number: 5 (lower is better) Translates to: SLTSMFSEQSLGFQP*CRWATRSGGGADRS Trigger: GCTCCTGTCTGCTCCCCCTCCTGACCTGGTTGCCCAACGGCACCACGGCTGGAACCCCAAGGATTGCTCCGAGAACATCGATGTCAAGGA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 ENSMUST00000112473.2 ENSMUST00000130160.2 ENSMUST00000143040.8 |
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| CDS-3UTR CAA 90 bp | CCCCAGAGCATGGCGCACACACAGGCGGCTCAGGTGCAGAAGGGATTGTGGTTCCACAGACCCCCTTCCTaGACATCGATGTTCTCGGAG | + |
|
Preference number: 5 (lower is better) Translates to: PQSMAHTQAAQVQKGLWFHRPPS*TSMFSE Trigger: CTCCGAGAACATCGATGTCAAGGAAGGGGGTCTGTG...GAACCACAATCCCTTCTGCACCTGAGCCGCCTGTGTGTGCGCCATGCTCTGGGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000112473.2 |
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| CDS-3UTR CAA 90 bp | AGCTTTTTAAAGTTGTCTAGGCCAGCGGGTGCCTCTCCACCTGTCCCCACGGTAGGCGTGTGTGCCCCTTaGCTCCAGGGGCCAGCTGAT | + |
|
Preference number: 5 (lower is better) Translates to: SFLKLSRPAGASPPVPTVGVCAP*LQGPAD Trigger: ATCAGCTGGCCCCTGGAGCAAAGGGGCACACACGCC...TACCGTGGGGACAGGTGGAGAGGCACCCGCTGGCCTAGACAACTTTAAAAAGCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 3 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 ENSMUST00000112473.2 |
||
| CDS-3UTR CAA 90 bp | GGTGCCTCTCCACCTGTCCCCACGGTAGGGTGCCAGCACACCCTGTACTACTGGCAGGTGCAGAAGGGATaGTGGTTCCTCCACTCTTCT | + |
|
Preference number: 5 (lower is better) Translates to: GASPPVPTVGCQHTLYYWQVQKG*WFLHSS Trigger: AGAAGAGTGGAGGAACCACAATCCCTTCTGCACCTG...CCAGTAGTACAGGGTGTGCTGGCACCCTACCGTGGGGACAGGTGGAGAGGCACC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 |
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| CDS GCA 90 bp | GAAGGGATTGTGGTTCCTCCACTCTTCTTTCGCCCATGTAGCGGATaGGGACCTGGCACTGGCCCCAAACAGCACTTACAGAGGGATAGA | + |
|
Preference number: 5 (lower is better) Translates to: EGIVVPPLFFRPCSG*GPGTGPKQHLQRDR Trigger: TCTATCCCTCTGTAAGTGCTGTTTGGGGCCAGTGCCAGGTCCGCATCCGCTACATGGGCGAAAGAAGAGTGGAGGAACCACAATCCCTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 ENSMUST00000143040.8 |
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| CDS-3UTR CAA 90 bp | AGCTTTTTAAAGTTGTCTAGGCCAGCGGGTGCCTCTCCACCTGTCCCCACGGTACACAGACCCCCTTCCTaGACATCGATGTTCTCGGAG | + |
|
Preference number: 5 (lower is better) Translates to: SFLKLSRPAGASPPVPTVHRPPS*TSMFSE Trigger: CTCCGAGAACATCGATGTCAAGGAAGGGGGTCTGTG...TACCGTGGGGACAGGTGGAGAGGCACCCGCTGGCCTAGACAACTTTAAAAAGCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 ENSMUST00000112473.2 |
||
| CDS-3UTR CAA 90 bp | TTTAATATCATTTCTATATGTCTTGCTCCTGTGAGAAGGGGAGGTGAAGGGGTCCCAGCCGTGGTGCCGTaGGGCAACCAGGTCAGGAGG | + |
|
Preference number: 5 (lower is better) Translates to: FNIISICLAPVRRGGEGVPAVVP*GNQVRR Trigger: CCTCCTGACCTGGTTGCCCAACGGCACCACGGCTGG...GACCCCTTCACCTCCCCTTCTCACAGGAGCAAGACATATAGAAATGATATTAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 ENSMUST00000112473.2 |
||
| CDS-3UTR CAA 90 bp | TTTAATATCATTTCTATATGTCTTGCTCCTGTGAGAAGGGGAGGTGAAGGGGTCGGCGTGTGTGCCCCTTaGCTCCAGGGGCCAGCTGAT | + |
|
Preference number: 5 (lower is better) Translates to: FNIISICLAPVRRGGEGVGVCAP*LQGPAD Trigger: ATCAGCTGGCCCCTGGAGCAAAGGGGCACACACGCC...GACCCCTTCACCTCCCCTTCTCACAGGAGCAAGACATATAGAAATGATATTAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 3 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 ENSMUST00000112473.2 |
||
| CDS-3UTR CAA 90 bp | AATATCATTTCTATATGTCTTGCTCCTGTGAGAAGGGGAGGTGAAGGGGTCCAGCAGGTGCAGAAGGGATaGTGGTTCCTCCACTCTTCT | + |
|
Preference number: 5 (lower is better) Translates to: NIISICLAPVRRGGEGVQQVQKG*WFLHSS Trigger: AGAAGAGTGGAGGAACCACAATCCCTTCTGCACCTG...CTGGACCCCTTCACCTCCCCTTCTCACAGGAGCAAGACATATAGAAATGATATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 |
||
| CDS-3UTR CAA 90 bp | TTTAATATCATTTCTATATGTCTTGCTCCTGTGAGAAGGGGAGGTGAAGGGGTCCACAGACCCCCTTCCTaGACATCGATGTTCTCGGAG | + |
|
Preference number: 5 (lower is better) Translates to: FNIISICLAPVRRGGEGVHRPPS*TSMFSE Trigger: CTCCGAGAACATCGATGTCAAGGAAGGGGGTCTGTG...GACCCCTTCACCTCCCCTTCTCACAGGAGCAAGACATATAGAAATGATATTAAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 ENSMUST00000112473.2 |
||
| CDS GCA 72 bp | CCCGCCCAATATCCCAGCCCCAGGACTCGCTGTTGCTaGCCAAAAGCGCCGCATAGTGGTCAGCCTGCAGCG | + |
|
Preference number: 6 (lower is better) Translates to: PAQYPSPRTRCC*PKAPHSGQPAA Trigger: CGCTGCAGGCTGACCACTATGCGGCGCTTTTGGGCAGCAACAGCGAGTCCTGGGGCTGGGATATTGGGCGGG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 ENSMUST00000112473.2 ENSMUST00000130160.2 ENSMUST00000143040.8 |
||
| CDS CAA 90 bp | GTGCTCTGGGCCACAGGGCGCCGCTCAAAGCACAGACCCCCTTCCTaGACATCGATGTTCTCGGAGCAATCCTTGGGGTTCCAGCCGTGG | + |
|
Preference number: 6 (lower is better) Translates to: VLWATGRRSKHRPPS*TSMFSEQSLGFQPW Trigger: CCACGGCTGGAACCCCAAGGATTGCTCCGAGAACATCGATGTCAAGGAAGGGGGTCTGTGCTTTGAGCGGCGCCCTGTGGCCCAGAGCAC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 ENSMUST00000112473.2 ENSMUST00000130160.2 ENSMUST00000143040.8 |
||
| CDS GCA 72 bp | ATGTTCTCGGAGCAATCCTTGGGGTTCCAGCCGTGGTaGCGTTGGGCAACCAGGTCAGGAGGGGGAGCAGAC | + |
|
Preference number: 6 (lower is better) Translates to: MFSEQSLGFQPW*RWATRSGGGAD Trigger: GTCTGCTCCCCCTCCTGACCTGGTTGCCCAACGGCACCACGGCTGGAACCCCAAGGATTGCTCCGAGAACAT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 ENSMUST00000112473.2 ENSMUST00000130160.2 ENSMUST00000143040.8 |
||
| CDS CCA 72 bp | TCGATGTTCTCGGAGCAATCCTTGGGGTTCCAGCCGTaGTGCCGTTGGGCAACCAGGTCAGGAGGGGGAGCA | + |
|
Preference number: 6 (lower is better) Translates to: SMFSEQSLGFQP*CRWATRSGGGA Trigger: TGCTCCCCCTCCTGACCTGGTTGCCCAACGGCACCACGGCTGGAACCCCAAGGATTGCTCCGAGAACATCGA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 ENSMUST00000112473.2 ENSMUST00000130160.2 ENSMUST00000143040.8 |
||
| CDS CCA 72 bp | GGGATAGAGGGTCCTCCCCTTCAGTCCACGGAAGGCTaGTCCCAGGTACGTGCCCCCAATAGAGTAGCCAAG | + |
|
Preference number: 6 (lower is better) Translates to: GIEGPPLQSTEG*SQVRAPNRVAK Trigger: CTTGGCTACTCTATTGGGGGCACGTACCTGGGACCAGCCTTCCGTGGACTGAAGGGGAGGACCCTCTATCCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 ENSMUST00000112473.2 ENSMUST00000130160.2 ENSMUST00000143040.8 |
||
| CDS CAA 72 bp | CCCCCTTCCTTGACATCGATGTTCTCGGAGCAATCCTaGGGGTTCCAGCCGTGGTGCCGTTGGGCAACCAGG | + |
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Preference number: 6 (lower is better) Translates to: PPSLTSMFSEQS*GFQPWCRWATR Trigger: CCTGGTTGCCCAACGGCACCACGGCTGGAACCCCAAGGATTGCTCCGAGAACATCGATGTCAAGGAAGGGGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 ENSMUST00000112473.2 ENSMUST00000130160.2 ENSMUST00000143040.8 |
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| CDS CAA 90 bp | AAGCACAGACCCCCTTCCTTGACATCGATGTTCTCGGAGCAATCCTaGGGGTTCCAGCCGTGGTGCCGTTGGGCAACCAGGTCAGGAGGG | + |
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Preference number: 6 (lower is better) Translates to: KHRPPSLTSMFSEQS*GFQPWCRWATRSGG Trigger: CCCTCCTGACCTGGTTGCCCAACGGCACCACGGCTGGAACCCCAAGGATTGCTCCGAGAACATCGATGTCAAGGAAGGGGGTCTGTGCTT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 ENSMUST00000112473.2 ENSMUST00000130160.2 ENSMUST00000143040.8 |
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| CDS TCA 72 bp | CCACAGGGCGCCGCTCAAAGCACAGACCCCCTTCCTTaGCATCGATGTTCTCGGAGCAATCCTTGGGGTTCC | + |
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Preference number: 6 (lower is better) Translates to: PQGAAQSTDPLP*HRCSRSNPWGS Trigger: GGAACCCCAAGGATTGCTCCGAGAACATCGATGTCAAGGAAGGGGGTCTGTGCTTTGAGCGGCGCCCTGTGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 ENSMUST00000112473.2 ENSMUST00000130160.2 ENSMUST00000143040.8 |
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| CDS CAA 72 bp | GCCACAGGGCGCCGCTCAAAGCACAGACCCCCTTCCTaGACATCGATGTTCTCGGAGCAATCCTTGGGGTTC | + |
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Preference number: 6 (lower is better) Translates to: ATGRRSKHRPPS*TSMFSEQSLGF Trigger: GAACCCCAAGGATTGCTCCGAGAACATCGATGTCAAGGAAGGGGGTCTGTGCTTTGAGCGGCGCCCTGTGGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 ENSMUST00000112473.2 ENSMUST00000130160.2 ENSMUST00000143040.8 |
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| CDS CCA 72 bp | GCGCACACACAGGCGGCTCAGGTGCAGAAGGGATTGTaGTTCCTCCACTCTTCTTTCGCCCATGTAGCGGAT | + |
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Preference number: 6 (lower is better) Translates to: AHTQAAQVQKGL*FLHSSFAHVAD Trigger: ATCCGCTACATGGGCGAAAGAAGAGTGGAGGAACCACAATCCCTTCTGCACCTGAGCCGCCTGTGTGTGCGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000047760.10 ENSMUST00000052727.5 ENSMUST00000143040.8 |
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| CDS CAA 72 bp | TCCTGTGCTCCAACCATGAGTTTCCAGCCCAAACCATaGCCAAGAGTAGTGATCTCCCCACACCTAGTCCGT | + |
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Preference number: 6 (lower is better) Translates to: SCAPTMSFQPKP*PRVVISPHLVR Trigger: ACGGACTAGGTGTGGGGAGATCACTACTCTTGGCAATGGTTTGGGCTGGAAACTCATGGTTGGAGCACAGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112473.2 |
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