Pregenerated sensors for SPRR3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000045539Ensembl transcript IDs: ENSMUST00000058142.4
Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ATGAACTTAGAGTACCCAGAGAGCATTCAAGGCACTAAGAAGTTCTaGTTAACTCAGAGGCTCTGGAGACACCTTAGAGGGTATGGAGAA | + |
|
Preference number: 1 (lower is better) Translates to: MNLEYPESIQGTKKF*LTQRLWRHLRGYGE Trigger: TTCTCCATACCCTCTAAGGTGTCTCCAGAGCCTCTGAGTTAAGCAGAACTTCTTAGTGCCTTGAATGCTCTCTGGGTACTCTAAGTTCAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058142.4 |
||
| 3UTR CCA 90 bp | CAAATAGAGACTGTAGCAACATATTGTTACATGGTCTCTAGACAATaGGGACACAGAGCTTACAGGAAAGACTTCAGCAGCAGGTGGTCA | + |
|
Preference number: 1 (lower is better) Translates to: QIETVATYCYMVSRQ*GHRAYRKDFSSRWS Trigger: TGACCACCTGCTGCTGAAGTCTTTCCTGTAAGCTCTGTGTCCCCATTGTCTAGAGACCATGTAACAATATGTTGCTACAGTCTCTATTTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058142.4 |
||
| 3UTR GCA 90 bp | AGGCTCTGGAGACACCTTAGAGGGTATGGAGAAGACATAACAGCATaGAATTTTAGGTTACAAATAGAGACTGTAGCAACATATTGTTAC | + |
|
Preference number: 1 (lower is better) Translates to: RLWRHLRGYGEDITA*NFRLQIETVATYCY Trigger: GTAACAATATGTTGCTACAGTCTCTATTTGTAACCTAAAATTGCATGCTGTTATGTCTTCTCCATACCCTCTAAGGTGTCTCCAGAGCCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058142.4 |
||
| 3UTR CCA 72 bp | GGACACAGAGCTTACAGGAAAGACTTCAGCAGCAGGTaGTCAGCTCCTCAAGGGTCTGGCTGGCTGTGGACT | + |
|
Preference number: 3 (lower is better) Translates to: GHRAYRKDFSSR*SAPQGSGWLWT Trigger: AGTCCACAGCCAGCCAGACCCTTGAGGAGCTGACCACCTGCTGCTGAAGTCTTTCCTGTAAGCTCTGTGTCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058142.4 |
||
| 3UTR GCA 72 bp | GAGTACCCAGAGAGCATTCAAGGCACTAAGAAGTTCTaGTTAACTCAGAGGCTCTGGAGACACCTTAGAGGG | + |
|
Preference number: 3 (lower is better) Translates to: EYPESIQGTKKF*LTQRLWRHLRG Trigger: CCCTCTAAGGTGTCTCCAGAGCCTCTGAGTTAAGCAGAACTTCTTAGTGCCTTGAATGCTCTCTGGGTACTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058142.4 |
||
| 3UTR CCA 72 bp | ACTGTAGCAACATATTGTTACATGGTCTCTAGACAATaGGGACACAGAGCTTACAGGAAAGACTTCAGCAGC | + |
|
Preference number: 3 (lower is better) Translates to: TVATYCYMVSRQ*GHRAYRKDFSS Trigger: GCTGCTGAAGTCTTTCCTGTAAGCTCTGTGTCCCCATTGTCTAGAGACCATGTAACAATATGTTGCTACAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058142.4 |
||
| CDS-3UTR CCA 90 bp | CAATGGGGACACAGAGCTTACAGGAAAGACTTCAGCAGCAGGTGGTCAGCTCCTCTGGCTCAGGCACTTTaGTGCTGCATGGTTCTGGAA | + |
|
Preference number: 4 (lower is better) Translates to: QWGHRAYRKDFSSRWSAPLAQAL*CCMVLE Trigger: TTCCAGAACCATGCAGCACCAAAGTGCCTGAGCCAG...AGGAGCTGACCACCTGCTGCTGAAGTCTTTCCTGTAAGCTCTGTGTCCCCATTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058142.4 |
||
| CDS-3UTR CCA 90 bp | ACTCAGAGGCTCTGGAGACACCTTAGAGGGTATGGAGAAGACATAACAGCATGCTTCAGGCTGAGGAGGTaGGACAAAGGGCTGCTTTTG | + |
|
Preference number: 4 (lower is better) Translates to: TQRLWRHLRGYGEDITACFRLRR*DKGLLL Trigger: CAAAAGCAGCCCTTTGTCCCACCTCCTCAGCCTGAA...GCATGCTGTTATGTCTTCTCCATACCCTCTAAGGTGTCTCCAGAGCCTCTGAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058142.4 |
||
| CDS-3UTR CCA 90 bp | CAATGGGGACACAGAGCTTACAGGAAAGACTTCAGCAGCAGGTGGTCAGCTCCTGGCATGGCTCAGAGGTaGCTATGGGAACAAATTTTC | + |
|
Preference number: 4 (lower is better) Translates to: QWGHRAYRKDFSSRWSAPGMAQR*LWEQIF Trigger: GAAAATTTGTTCCCATAGCCACCTCTGAGCCATGCC...AGGAGCTGACCACCTGCTGCTGAAGTCTTTCCTGTAAGCTCTGTGTCCCCATTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058142.4 |
||
| CDS-3UTR CCA 90 bp | ACTCAGAGGCTCTGGAGACACCTTAGAGGGTATGGAGAAGACATAACAGCATGCAACATCTGTGTGGCATaGCTCAGAGGTGGCTATGGG | + |
|
Preference number: 4 (lower is better) Translates to: TQRLWRHLRGYGEDITACNICVA*LRGGYG Trigger: CCCATAGCCACCTCTGAGCCATGCCACACAGATGTT...GCATGCTGTTATGTCTTCTCCATACCCTCTAAGGTGTCTCCAGAGCCTCTGAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058142.4 |
||
| CDS-3UTR GCA 90 bp | ACTCAGAGGCTCTGGAGACACCTTAGAGGGTATGGAGAAGACATAACAGCATGCCAGGCACTTTGGTGCTaGATGGTTCTGGAATCTTGG | + |
|
Preference number: 4 (lower is better) Translates to: TQRLWRHLRGYGEDITACQALWC*MVLESW Trigger: CCAAGATTCCAGAACCATGCAGCACCAAAGTGCCTG...GCATGCTGTTATGTCTTCTCCATACCCTCTAAGGTGTCTCCAGAGCCTCTGAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058142.4 |
||
| CDS-3UTR GCA 90 bp | ACTCAGAGGCTCTGGAGACACCTTAGAGGGTATGGAGAAGACATAACAGCATGCGCTCAGGCACTTTGGTaGTGCATGGTTCTGGAATCT | + |
|
Preference number: 4 (lower is better) Translates to: TQRLWRHLRGYGEDITACAQALW*CMVLES Trigger: AGATTCCAGAACCATGCAGCACCAAAGTGCCTGAGC...GCATGCTGTTATGTCTTCTCCATACCCTCTAAGGTGTCTCCAGAGCCTCTGAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058142.4 |
||
| CDS-3UTR CCA 90 bp | TACCCAGAGAGCATTCAAGGCACTAAGAAGTTCTGCTTAACTCAGAGGCTCTGGTCAGGAACCCTGGACTaGCATGGCTCTGGTACCTTA | + |
|
Preference number: 4 (lower is better) Translates to: YPESIQGTKKFCLTQRLWSGTLD*HGSGTL Trigger: TAAGGTACCAGAGCCATGCCAGTCCAGGGTTCCTGA...CCAGAGCCTCTGAGTTAAGCAGAACTTCTTAGTGCCTTGAATGCTCTCTGGGTA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058142.4 |
||
| CDS-3UTR TCA 90 bp | CATAGAAAATCCCATAGATTTCTGCTTCAGATGAACTTAGAGTACCCAGAGAGCGGCATGGGTGGGCTCTaGGGCATTCATGTAGCCAGG | + |
|
Preference number: 4 (lower is better) Translates to: HRKSHRFLLQMNLEYPESGMGGL*GIHVAR Trigger: CCTGGCTACATGAATGCCTCAGAGCCCACCCATGCC...GCTCTCTGGGTACTCTAAGTTCATCTGAAGCAGAAATCTATGGGATTTTCTATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058142.4 |
||
| CDS-3UTR CCA 90 bp | CAACATATTGTTACATGGTCTCTAGACAATGGGGACACAGAGCTTACAGGAAAGAAGTACTGGAAGGACTaGGCCCAGGAACCATGGCAC | + |
|
Preference number: 4 (lower is better) Translates to: QHIVTWSLDNGDTELTGKKYWKD*AQEPWH Trigger: GTGCCATGGTTCCTGGGCCCAGTCCTTCCAGTACTT...CTTTCCTGTAAGCTCTGTGTCCCCATTGTCTAGAGACCATGTAACAATATGTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058142.4 |
||
| CDS-3UTR CCA 90 bp | TCCCATAGATTTCTGCTTCAGATGAACTTAGAGTACCCAGAGAGCATTCAAGGCTTGGCTCAGAAGTACTaGAAGGACTGGGCCCAGGAA | + |
|
Preference number: 4 (lower is better) Translates to: SHRFLLQMNLEYPESIQGLAQKY*KDWAQE Trigger: TTCCTGGGCCCAGTCCTTCCAGTACTTCTGAGCCAA...GCCTTGAATGCTCTCTGGGTACTCTAAGTTCATCTGAAGCAGAAATCTATGGGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058142.4 |
||
| CDS-3UTR TCA 90 bp | GCAACATATTGTTACATGGTCTCTAGACAATGGGGACACAGAGCTTACAGGAAAGGTCTTCTGCTTAGCTaGTACAGGGGTGACAGTTGG | + |
|
Preference number: 4 (lower is better) Translates to: ATYCYMVSRQWGHRAYRKGLLLS*YRGDSW Trigger: CCAACTGTCACCCCTGTATCAGCTAAGCAGAAGACC...TTTCCTGTAAGCTCTGTGTCCCCATTGTCTAGAGACCATGTAACAATATGTTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058142.4 |
||
| CDS-3UTR CCA 90 bp | ATTGTTACATGGTCTCTAGACAATGGGGACACAGAGCTTACAGGAAAGACTTCAAACCCTGGACTGGCATaGCTCTGGTACCTTAGAGGA | + |
|
Preference number: 4 (lower is better) Translates to: IVTWSLDNGDTELTGKTSNPGLA*LWYLRG Trigger: TCCTCTAAGGTACCAGAGCCATGCCAGTCCAGGGTT...TGAAGTCTTTCCTGTAAGCTCTGTGTCCCCATTGTCTAGAGACCATGTAACAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058142.4 |
||
| CDS-3UTR CCA 90 bp | TACCCAGAGAGCATTCAAGGCACTAAGAAGTTCTGCTTAACTCAGAGGCTCTGGAACAAATTTTCCTTGTaGTGGAGGCTGACAAGGTTG | + |
|
Preference number: 4 (lower is better) Translates to: YPESIQGTKKFCLTQRLWNKFSL*WRLTRL Trigger: CAACCTTGTCAGCCTCCACCACAAGGAAAATTTGTT...CCAGAGCCTCTGAGTTAAGCAGAACTTCTTAGTGCCTTGAATGCTCTCTGGGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058142.4 |
||
| CDS-3UTR CCA 90 bp | CAACATATTGTTACATGGTCTCTAGACAATGGGGACACAGAGCTTACAGGAAAGGGTGTTTCCTGGTTGTaGAACATCTGTGTGGCATGG | + |
|
Preference number: 4 (lower is better) Translates to: QHIVTWSLDNGDTELTGKGVSWL*NICVAW Trigger: CCATGCCACACAGATGTTCCACAACCAGGAAACACC...CTTTCCTGTAAGCTCTGTGTCCCCATTGTCTAGAGACCATGTAACAATATGTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058142.4 |
||
| CDS-3UTR CCA 90 bp | GCAACATATTGTTACATGGTCTCTAGACAATGGGGACACAGAGCTTACAGGAAAAACAACAGTGTTCCCTaGCTCAGGCACTTTGGTGCT | + |
|
Preference number: 4 (lower is better) Translates to: ATYCYMVSRQWGHRAYRKNNSVP*LRHFGA Trigger: AGCACCAAAGTGCCTGAGCCAGGGAACACTGTTGTT...TTTCCTGTAAGCTCTGTGTCCCCATTGTCTAGAGACCATGTAACAATATGTTGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058142.4 |
||
| CDS-3UTR CCA 90 bp | TATTGTTACATGGTCTCTAGACAATGGGGACACAGAGCTTACAGGAAAGACTTCGCTCAGAGGTGGCTATaGGAACAAATTTTCCTTGTG | + |
|
Preference number: 4 (lower is better) Translates to: YCYMVSRQWGHRAYRKDFAQRWL*EQIFLV Trigger: CACAAGGAAAATTTGTTCCCATAGCCACCTCTGAGC...GAAGTCTTTCCTGTAAGCTCTGTGTCCCCATTGTCTAGAGACCATGTAACAATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058142.4 |
||
| CDS-3UTR CCA 90 bp | ATTGTTACATGGTCTCTAGACAATGGGGACACAGAGCTTACAGGAAAGACTTCACACTTTGGTGCTGCATaGTTCTGGAATCTTGGTGTT | + |
|
Preference number: 4 (lower is better) Translates to: IVTWSLDNGDTELTGKTSHFGAA*FWNLGV Trigger: AACACCAAGATTCCAGAACCATGCAGCACCAAAGTG...TGAAGTCTTTCCTGTAAGCTCTGTGTCCCCATTGTCTAGAGACCATGTAACAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058142.4 |
||
| CDS-3UTR CCA 90 bp | GCATGCAATTTTAGGTTACAAATAGAGACTGTAGCAACATATTGTTACATGGTCTCAGGAACCTTGGCATaGGTGGGCTCTGAGGCATTC | + |
|
Preference number: 4 (lower is better) Translates to: ACNFRLQIETVATYCYMVSGTLA*VGSEAF Trigger: GAATGCCTCAGAGCCCACCCATGCCAAGGTTCCTGA...GACCATGTAACAATATGTTGCTACAGTCTCTATTTGTAACCTAAAATTGCATGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058142.4 |
||
| CDS-3UTR TCA 90 bp | GGAGAAGACATAACAGCATGCAATTTTAGGTTACAAATAGAGACTGTAGCAACAGATAGAGCATGGTTCTaGGCTTGGCTCAGAAGTACT | + |
|
Preference number: 4 (lower is better) Translates to: GEDITACNFRLQIETVATDRAWF*AWLRST Trigger: AGTACTTCTGAGCCAAGCTCAGAACCATGCTCTATC...TGTTGCTACAGTCTCTATTTGTAACCTAAAATTGCATGCTGTTATGTCTTCTCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058142.4 |
||
| CDS-3UTR CCA 90 bp | GCATGCAATTTTAGGTTACAAATAGAGACTGTAGCAACATATTGTTACATGGTCGGTGCTGCATGGTTCTaGAATCTTGGTGTTTCCTGG | + |
|
Preference number: 4 (lower is better) Translates to: ACNFRLQIETVATYCYMVGAAWF*NLGVSW Trigger: CCAGGAAACACCAAGATTCCAGAACCATGCAGCACC...GACCATGTAACAATATGTTGCTACAGTCTCTATTTGTAACCTAAAATTGCATGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058142.4 |
||
| CDS-3UTR CCA 90 bp | ATTGTTACATGGTCTCTAGACAATGGGGACACAGAGCTTACAGGAAAGACTTCACATCGTAGTATAATCTaGCTCAAGAACAACAGTGTT | + |
|
Preference number: 4 (lower is better) Translates to: IVTWSLDNGDTELTGKTSHRSII*LKNNSV Trigger: AACACTGTTGTTCTTGAGCCAGATTATACTACGATG...TGAAGTCTTTCCTGTAAGCTCTGTGTCCCCATTGTCTAGAGACCATGTAACAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058142.4 |
||
| CDS-3UTR CCA 90 bp | GGAGAAGACATAACAGCATGCAATTTTAGGTTACAAATAGAGACTGTAGCAACAAATTGTGGTATAATCTaGCTCTGTGATGTTGGTAGA | + |
|
Preference number: 4 (lower is better) Translates to: GEDITACNFRLQIETVATNCGII*LCDVGR Trigger: TCTACCAACATCACAGAGCCAGATTATACCACAATT...TGTTGCTACAGTCTCTATTTGTAACCTAAAATTGCATGCTGTTATGTCTTCTCC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058142.4 |
||
| CDS-3UTR CCA 90 bp | GGAGAAGACATAACAGCATGCAATTTTAGGTTACAAATAGAGACTGTAGCAACAAATTGTAGTATAATCTaGCTCTGTGATGTTGGTAGA | + |
|
Preference number: 4 (lower is better) Translates to: GEDITACNFRLQIETVATNCSII*LCDVGR Trigger: TCTACCAACATCACAGAGCCAGATTATACTACAATT...TGTTGCTACAGTCTCTATTTGTAACCTAAAATTGCATGCTGTTATGTCTTCTCC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058142.4 |
||
| CDS CCA 90 bp | CTCAGAAGTACTGGAAGGACTGGGCCCAGGAACCATGGCACAGCCTaGGTCAGGGATTTTGGTAGAGGATGGCCCAGGAATTGTGGTATA | + |
|
Preference number: 5 (lower is better) Translates to: LRSTGRTGPRNHGTA*VRDFGRGWPRNCGI Trigger: TATACCACAATTCCTGGGCCATCCTCTACCAAAATCCCTGACCCAGGCTGTGCCATGGTTCCTGGGCCCAGTCCTTCCAGTACTTCTGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058142.4 |
||
| CDS-3UTR CAA 90 bp | TACCCAGAGAGCATTCAAGGCACTAAGAAGTTCTGCTTAACTCAGAGGCTCTGGCCTGGCTCAGGCACTTaGGTGCTGCATGGTTCTGGA | + |
|
Preference number: 5 (lower is better) Translates to: YPESIQGTKKFCLTQRLWPGSGT*VLHGSG Trigger: TCCAGAACCATGCAGCACCAAAGTGCCTGAGCCAGG...CCAGAGCCTCTGAGTTAAGCAGAACTTCTTAGTGCCTTGAATGCTCTCTGGGTA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058142.4 |
||
| CDS TCA 90 bp | GGCATTCATGTAGCCAGGTTCACGAACATTGATAGAGCATGGTTCTaGGCTTGGCTCAGAAGTACTGGAAGGACTGGGCCCAGGAACCAT | + |
|
Preference number: 5 (lower is better) Translates to: GIHVARFTNIDRAWF*AWLRSTGRTGPRNH Trigger: ATGGTTCCTGGGCCCAGTCCTTCCAGTACTTCTGAGCCAAGCTCAGAACCATGCTCTATCAATGTTCGTGAACCTGGCTACATGAATGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058142.4 |
||
| CDS CCA 90 bp | TGGTGTTTCCTGGTTGTGGAACATCTGTGTGGCATGGCTCAGAGGTaGCTATGGGAACAAATTTTCCTTGTGGTGGAGGCTGACAAGGTT | + |
|
Preference number: 5 (lower is better) Translates to: WCFLVVEHLCGMAQR*LWEQIFLVVEADKV Trigger: AACCTTGTCAGCCTCCACCACAAGGAAAATTTGTTCCCATAGCCACCTCTGAGCCATGCCACACAGATGTTCCACAACCAGGAAACACCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058142.4 |
||
| CDS-3UTR CAA 90 bp | GGCACTAAGAAGTTCTGCTTAACTCAGAGGCTCTGGAGACACCTTAGAGGGTATTCTGGCTCTGTGATGTaGGTAGAGCATGATCCAGGA | + |
|
Preference number: 5 (lower is better) Translates to: GTKKFCLTQRLWRHLRGYSGSVM*VEHDPG Trigger: TCCTGGATCATGCTCTACCAACATCACAGAGCCAGA...ATACCCTCTAAGGTGTCTCCAGAGCCTCTGAGTTAAGCAGAACTTCTTAGTGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058142.4 |
||
| CDS CCA 90 bp | CTCTGTGATGTTGGTAGAGCATGGCCCAGGAATTGTGGTATAATCTaGCTCAGTGATGTTTGTAGAACATGGCCCAGGCATCGTAGTATA | + |
|
Preference number: 5 (lower is better) Translates to: LCDVGRAWPRNCGII*LSDVCRTWPRHRSI Trigger: TATACTACGATGCCTGGGCCATGTTCTACAAACATCACTGAGCCAGATTATACCACAATTCCTGGGCCATGCTCTACCAACATCACAGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058142.4 |
||
| CDS-3UTR CAA 90 bp | TCCCATAGATTTCTGCTTCAGATGAACTTAGAGTACCCAGAGAGCATTCAAGGCCTTGGTGTTTCCTGGTaGTGGAACATCTGTGTGGCA | + |
|
Preference number: 5 (lower is better) Translates to: SHRFLLQMNLEYPESIQGLGVSW*WNICVA Trigger: TGCCACACAGATGTTCCACAACCAGGAAACACCAAG...GCCTTGAATGCTCTCTGGGTACTCTAAGTTCATCTGAAGCAGAAATCTATGGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058142.4 |
||
| CDS-3UTR CAA 90 bp | CAACATATTGTTACATGGTCTCTAGACAATGGGGACACAGAGCTTACAGGAAAGTGGAGGCTGACAAGGTaGCTTCACTTGATGCTGTTC | + |
|
Preference number: 5 (lower is better) Translates to: QHIVTWSLDNGDTELTGKWRLTR*LHLMLF Trigger: GAACAGCATCAAGTGAAGCAACCTTGTCAGCCTCCA...CTTTCCTGTAAGCTCTGTGTCCCCATTGTCTAGAGACCATGTAACAATATGTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058142.4 |
||
| CDS-3UTR CAA 90 bp | CATATTGTTACATGGTCTCTAGACAATGGGGACACAGAGCTTACAGGAAAGACTGGGAACAAATTTTCCTaGTGGTGGAGGCTGACAAGG | + |
|
Preference number: 5 (lower is better) Translates to: HIVTWSLDNGDTELTGKTGNKFS*WWRLTR Trigger: CCTTGTCAGCCTCCACCACAAGGAAAATTTGTTCCC...AGTCTTTCCTGTAAGCTCTGTGTCCCCATTGTCTAGAGACCATGTAACAATATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058142.4 |
||
| CDS-3UTR CAA 90 bp | GGAGAAGACATAACAGCATGCAATTTTAGGTTACAAATAGAGACTGTAGCAACATCTGGCTCTGTGATGTaGGTAGAGCATGGCCCAGGA | + |
|
Preference number: 5 (lower is better) Translates to: GEDITACNFRLQIETVATSGSVM*VEHGPG Trigger: TCCTGGGCCATGCTCTACCAACATCACAGAGCCAGA...TGTTGCTACAGTCTCTATTTGTAACCTAAAATTGCATGCTGTTATGTCTTCTCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058142.4 |
||
| CDS CCA 72 bp | ATGGTTCTGAGCTTGGCTCAGAAGTACTGGAAGGACTaGGCCCAGGAACCATGGCACAGCCTGGGTCAGGGA | + |
|
Preference number: 6 (lower is better) Translates to: MVLSLAQKYWKD*AQEPWHSLGQG Trigger: TCCCTGACCCAGGCTGTGCCATGGTTCCTGGGCCCAGTCCTTCCAGTACTTCTGAGCCAAGCTCAGAACCAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058142.4 |
||
| CDS CCA 72 bp | GGGGCACACCTCAGGAACCCTGGACTGGCATGGCTCTaGTACCTTAGAGGATCCCTGGTCAGGTATCTTGGT | + |
|
Preference number: 6 (lower is better) Translates to: GAHLRNPGLAWL*YLRGSLVRYLG Trigger: ACCAAGATACCTGACCAGGGATCCTCTAAGGTACCAGAGCCATGCCAGTCCAGGGTTCCTGAGGTGTGCCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058142.4 |
||
| CDS TCA 72 bp | GTAGCCAGGTTCACGAACATTGATAGAGCATGGTTCTaGGCTTGGCTCAGAAGTACTGGAAGGACTGGGCCC | + |
|
Preference number: 6 (lower is better) Translates to: VARFTNIDRAWF*AWLRSTGRTGP Trigger: GGGCCCAGTCCTTCCAGTACTTCTGAGCCAAGCTCAGAACCATGCTCTATCAATGTTCGTGAACCTGGCTAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058142.4 |
||
| CDS TCA 72 bp | GTAGCCCTGATCAGGAACCTTGGCATGGGTGGGCTCTaGGGCATTCATGTAGCCAGGTTCACGAACATTGAT | + |
|
Preference number: 6 (lower is better) Translates to: VALIRNLGMGGL*GIHVARFTNID Trigger: ATCAATGTTCGTGAACCTGGCTACATGAATGCCTCAGAGCCCACCCATGCCAAGGTTCCTGATCAGGGCTAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058142.4 |
||
| CDS CCA 72 bp | CTGGTTGTGGAACATCTGTGTGGCATGGCTCAGAGGTaGCTATGGGAACAAATTTTCCTTGTGGTGGAGGCT | + |
|
Preference number: 6 (lower is better) Translates to: LVVEHLCGMAQR*LWEQIFLVVEA Trigger: AGCCTCCACCACAAGGAAAATTTGTTCCCATAGCCACCTCTGAGCCATGCCACACAGATGTTCCACAACCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058142.4 |
||
| CDS CCA 72 bp | CTTGGTGTTTCCTGGTTGTGGAACATCTGTGTGGCATaGCTCAGAGGTGGCTATGGGAACAAATTTTCCTTG | + |
|
Preference number: 6 (lower is better) Translates to: LGVSWLWNICVA*LRGGYGNKFSL Trigger: CAAGGAAAATTTGTTCCCATAGCCACCTCTGAGCCATGCCACACAGATGTTCCACAACCAGGAAACACCAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058142.4 |
||
| CDS CCA 72 bp | CGTAGTATAATCTGGCTCAAGAACAACAGTGTTCCCTaGCTCAGGCACTTTGGTGCTGCATGGTTCTGGAAT | + |
|
Preference number: 6 (lower is better) Translates to: RSIIWLKNNSVP*LRHFGAAWFWN Trigger: ATTCCAGAACCATGCAGCACCAAAGTGCCTGAGCCAGGGAACACTGTTGTTCTTGAGCCAGATTATACTACG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058142.4 |
||
| CDS CCA 72 bp | GTTGGTAGAGCATGGCCCAGGAATTGTGGTATAATCTaGCTCAGTGATGTTTGTAGAACATGGCCCAGGCAT | + |
|
Preference number: 6 (lower is better) Translates to: VGRAWPRNCGII*LSDVCRTWPRH Trigger: ATGCCTGGGCCATGTTCTACAAACATCACTGAGCCAGATTATACCACAATTCCTGGGCCATGCTCTACCAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058142.4 |
||
| CDS CCA 72 bp | GTTGGTAGAGCATGGCCCAGGAATTGTAGTATAATCTaGCTCTGTGATGTTGGTAGAGCATGGCCCAGGAAT | + |
|
Preference number: 6 (lower is better) Translates to: VGRAWPRNCSII*LCDVGRAWPRN Trigger: ATTCCTGGGCCATGCTCTACCAACATCACAGAGCCAGATTATACTACAATTCCTGGGCCATGCTCTACCAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058142.4 |
||
| CDS CCA 72 bp | TGTGGTATAATCTGGCTCAGTGATGTTTGTAGAACATaGCCCAGGCATCGTAGTATAATCTGGCTCAAGAAC | + |
|
Preference number: 6 (lower is better) Translates to: CGIIWLSDVCRT*PRHRSIIWLKN Trigger: GTTCTTGAGCCAGATTATACTACGATGCCTGGGCCATGTTCTACAAACATCACTGAGCCAGATTATACCACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058142.4 |
||