Pregenerated sensors for SPRR2K (Mus musculus)

Ensembl gene IDs: ENSMUSG00000054215

Ensembl transcript IDs: ENSMUST00000067102.3

Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR-3UTR TCA 90 bp	ACCATTTCCAACAGTCCCTTGACAGCAGCAGAGGAATACATTCAGGGAAATTCCATCCATGAGAGGTTGTaGAGGGAAGATAGAGGTGTT	+
Preference number: 2 (lower is better) Translates to: TISNSPLTAAEEYIQGNSIHERL*REDRGV Trigger: AACACCTCTATCTTCCCTTCACAACCTCTCATGGAT...GGAATTTCCCTGAATGTATTCCTCTGCTGCTGTCAAGGGACTGTTGGAAATGGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067102.3
3UTR-3UTR CCA 90 bp	ACCATTTCCAACAGTCCCTTGACAGCAGCAGAGGAATACATTCAGGGAAATTCCTATGGAAGTACACAATaGATTCTCTTCTCTTCTCTT	+
Preference number: 2 (lower is better) Translates to: TISNSPLTAAEEYIQGNSYGSTQ*ILFSSL Trigger: AAGAGAAGAGAAGAGAATCCATTGTGTACTTCCATA...GGAATTTCCCTGAATGTATTCCTCTGCTGCTGTCAAGGGACTGTTGGAAATGGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067102.3
3UTR-3UTR CAA 90 bp	CCATCAGGAATACTAGGCCACAAAGGAAGGACCATTTCCAACAGTCCCTTGACAGGGAAGATAGAGGTGTaGTTATGGAAGTACACAATG	+
Preference number: 3 (lower is better) Translates to: PSGILGHKGRTISNSPLTGKIEV*LWKYTM Trigger: CATTGTGTACTTCCATAACAACACCTCTATCTTCCC...TGTCAAGGGACTGTTGGAAATGGTCCTTCCTTTGTGGCCTAGTATTCCTGATGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067102.3
3UTR CCA 72 bp	ATGAGAGGTTGTGAAGGGAAGATAGAGGTGTTGTTATaGAAGTACACAATGGATTCTCTTCTCTTCTCTTGG	+
Preference number: 3 (lower is better) Translates to: MRGCEGKIEVLL*KYTMDSLLFSW Trigger: CCAAGAGAAGAGAAGAGAATCCATTGTGTACTTCCATAACAACACCTCTATCTTCCCTTCACAACCTCTCAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067102.3
3UTR TCA 72 bp	TCACTGAAATTGTTTATTCAGAAAAAGAAACATCAGTaGGAATTGTCTCACTCCTGGCCAAGTGAGAGGCAA	+
Preference number: 3 (lower is better) Translates to: SLKLFIQKKKHQ*ELSHSWPSERQ Trigger: TTGCCTCTCACTTGGCCAGGAGTGAGACAATTCTCACTGATGTTTCTTTTTCTGAATAAACAATTTCAGTGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000067102.3
CDS-3UTR TCA 90 bp	TCTGCATCCATGAGAGGTTGTGAAGGGAAGATAGAGGTGTTGTTATGGAAGTACTTCCGCTGGCATGGCTaGGGAGGGCATGTCTCAGGG	+
Preference number: 4 (lower is better) Translates to: SASMRGCEGKIEVLLWKYFRWHG*GGHVSG Trigger: CCCTGAGACATGCCCTCCTCAGCCATGCCAGCGGAA...GTACTTCCATAACAACACCTCTATCTTCCCTTCACAACCTCTCATGGATGCAGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067102.3
CDS-3UTR GCA 90 bp	ACCATTTCCAACAGTCCCTTGACAGCAGCAGAGGAATACATTCAGGGAAATTCCTTTCTGCTGGCATGGTaGCTCCAGGACAGGAGGGCA	+
Preference number: 4 (lower is better) Translates to: TISNSPLTAAEEYIQGNSFLLAW*LQDRRA Trigger: TGCCCTCCTGTCCTGGAGGCACCATGCCAGCAGAAA...GGAATTTCCCTGAATGTATTCCTCTGCTGCTGTCAAGGGACTGTTGGAAATGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067102.3
CDS-3UTR TCA 90 bp	ACTTGCTATTCTTCCTTCTCACCATCAGGAATACTAGGCCACAAAGGAAGGACCTACACAGGAAGAGGCTaGCACAGCTGCTTACACTGC	+
Preference number: 4 (lower is better) Translates to: TCYSSFSPSGILGHKGRTYTGRG*HSCLHC Trigger: GCAGTGTAAGCAGCTGTGTCAGCCTCTTCCTGTGTA...GGTCCTTCCTTTGTGGCCTAGTATTCCTGATGGTGAGAAGGAAGAATAGCAAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067102.3
CDS-3UTR CCA 90 bp	TCTGCATCCATGAGAGGTTGTGAAGGGAAGATAGAGGTGTTGTTATGGAAGTACACAAGGCTTTGGGGGTaGGTACACAGGAAGAGGCTG	+
Preference number: 4 (lower is better) Translates to: SASMRGCEGKIEVLLWKYTRLWG*VHRKRL Trigger: CAGCCTCTTCCTGTGTACCCACCCCCAAAGCCTTGT...GTACTTCCATAACAACACCTCTATCTTCCCTTCACAACCTCTCATGGATGCAGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000067102.3
CDS-3UTR CCA 90 bp	AGGTGTTGTTATGGAAGTACACAATGGATTCTCTTCTCTTCTCTTGGTCTTGATACATTTCTGCTGGCATaGTGCCTCCAGGACAGGAGG	+
Preference number: 4 (lower is better) Translates to: RCCYGSTQWILFSSLGLDTFLLA*CLQDRR Trigger: CCTCCTGTCCTGGAGGCACCATGCCAGCAGAAATGT...ATCAAGACCAAGAGAAGAGAAGAGAATCCATTGTGTACTTCCATAACAACACCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067102.3
CDS-3UTR CCA 90 bp	TTCCAACAGTCCCTTGACAGCAGCAGAGGAATACATTCAGGGAAATTCCTTCCCTTACTTGCTTTTGGATaGACATTTCTGCTGGCATGG	+
Preference number: 4 (lower is better) Translates to: FQQSLDSSRGIHSGKFLPLLAFG*TFLLAW Trigger: CCATGCCAGCAGAAATGTCCATCCAAAAGCAAGTAA...GGGAAGGAATTTCCCTGAATGTATTCCTCTGCTGCTGTCAAGGGACTGTTGGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067102.3
3UTR CAA 72 bp	ACTGAGAAAGCCCCTCTACAGGCATTAAGATGCCACTaGCTATTCTTCCTTCTCACCATCAGGAATACTAGG	+
Preference number: 4 (lower is better) Translates to: TEKAPLQALRCH*LFFLLTIRNTR Trigger: CCTAGTATTCCTGATGGTGAGAAGGAAGAATAGCAAGTGGCATCTTAATGCCTGTAGAGGGGCTTTCTCAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067102.3
3UTR CAA 72 bp	GCATCCATGAGAGGTTGTGAAGGGAAGATAGAGGTGTaGTTATGGAAGTACACAATGGATTCTCTTCTCTTC	+
Preference number: 4 (lower is better) Translates to: ASMRGCEGKIEV*LWKYTMDSLLF Trigger: GAAGAGAAGAGAATCCATTGTGTACTTCCATAACAACACCTCTATCTTCCCTTCACAACCTCTCATGGATGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067102.3
CDS CAA 72 bp	GACAAGGCTCAGGGCACTTTGGAGGAGAACAAGGCTTaGGGGGTGGGTACACAGGAAGAGGCTGACACAGCT	+
Preference number: 6 (lower is better) Translates to: DKAQGTLEENKA*GVGTQEEADTA Trigger: AGCTGTGTCAGCCTCTTCCTGTGTACCCACCCCCAAAGCCTTGTTCTCCTCCAAAGTGCCCTGAGCCTTGTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000067102.3