Pregenerated sensors for SPRR2I (Mus musculus)
Ensembl gene IDs: ENSMUSG00000042157Ensembl transcript IDs: ENSMUST00000047264.3
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GATTTGAAAAATGGTCTACTGAACCATGCAAGAAGGATCATTCTCTaGAGGCCCTTTACAGCAGCAGGATTATCATCTCAGGTTAATGCC | + |
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Preference number: 1 (lower is better) Translates to: DLKNGLLNHARRIIL*RPFTAAGLSSQVNA Trigger: GGCATTAACCTGAGATGATAATCCTGCTGCTGTAAAGGGCCTGCAGAGAATGATCCTTCTTGCATGGTTCAGTAGACCATTTTTCAAATC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047264.3 |
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| 3UTR-3UTR TCA 90 bp | CAGGATTATCATCTCAGGTTAATGCCTTCCCTATCAGAGATAATCACTGGCATGATCTGTGACAGACTCTaGAGGGAAGACATCAGTTGT | + |
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Preference number: 2 (lower is better) Translates to: QDYHLRLMPSLSEIITGMICDRL*REDISC Trigger: ACAACTGATGTCTTCCCTTCAGAGTCTGTCACAGAT...CATGCCAGTGATTATCTCTGATAGGGAAGGCATTAACCTGAGATGATAATCCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047264.3 |
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| 3UTR-3UTR TCA 90 bp | AGATTTGAAAAATGGTCTACTGAACCATGCAAGAAGGATCATTCTCTGCAGGCCATTCTTCTGCATCTGTaGCAGACTCTGAAGGGAAGA | + |
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Preference number: 2 (lower is better) Translates to: RFEKWSTEPCKKDHSLQAILLHL*QTLKGR Trigger: TCTTCCCTTCAGAGTCTGTCACAGATGCAGAAGAAT...GGCCTGCAGAGAATGATCCTTCTTGCATGGTTCAGTAGACCATTTTTCAAATCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047264.3 |
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| 3UTR-3UTR CCA 90 bp | CAGGATTATCATCTCAGGTTAATGCCTTCCCTATCAGAGATAATCACTGGCATGCATCAGTTGTTGCTATaGAGGCATGTGAGATGGAGT | + |
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Preference number: 2 (lower is better) Translates to: QDYHLRLMPSLSEIITGMHQLLL*RHVRWS Trigger: ACTCCATCTCACATGCCTCCATAGCAACAACTGATG...CATGCCAGTGATTATCTCTGATAGGGAAGGCATTAACCTGAGATGATAATCCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047264.3 |
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| 3UTR-3UTR TCA 90 bp | AAAGTGACAGAGAGATTTGAAAAATGGTCTACTGAACCATGCAAGAAGGATCATTGCTATGGAGGCATGTaGGATGGAGTTCCTCTTCTT | + |
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Preference number: 2 (lower is better) Translates to: KVTERFEKWSTEPCKKDHCYGGM*DGVPLL Trigger: AAGAAGAGGAACTCCATCTCACATGCCTCCATAGCA...ATGATCCTTCTTGCATGGTTCAGTAGACCATTTTTCAAATCTCTCTGTCACTTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047264.3 |
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| 3UTR CCA 72 bp | GGAAGACATCAGTTGTTGCTATGGAGGCATGTGAGATaGAGTTCCTCTTCTTCTCTTGGTCTCGATGAATGC | + |
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Preference number: 3 (lower is better) Translates to: GRHQLLLWRHVR*SSSSSLGLDEC Trigger: GCATTCATCGAGACCAAGAGAAGAAGAGGAACTCCATCTCACATGCCTCCATAGCAACAACTGATGTCTTCC 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047264.3 |
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| 3UTR TCA 72 bp | ATGTGGAGCAAATTCTTCTGCATCTGTGACAGACTCTaGAGGGAAGACATCAGTTGTTGCTATGGAGGCATG | + |
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Preference number: 3 (lower is better) Translates to: MWSKFFCICDRL*REDISCCYGGM Trigger: CATGCCTCCATAGCAACAACTGATGTCTTCCCTTCAGAGTCTGTCACAGATGCAGAAGAATTTGCTCCACAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047264.3 |
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| 3UTR TCA 72 bp | AGGAGGTGCTATGTGGAGCAAATTCTTCTGCATCTGTaGCAGACTCTGAAGGGAAGACATCAGTTGTTGCTA | + |
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Preference number: 3 (lower is better) Translates to: RRCYVEQILLHL*QTLKGRHQLLL Trigger: TAGCAACAACTGATGTCTTCCCTTCAGAGTCTGTCACAGATGCAGAAGAATTTGCTCCACATAGCACCTCCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047264.3 |
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| CDS-3UTR CCA 90 bp | CTGAAGGGAAGACATCAGTTGTTGCTATGGAGGCATGTGAGATGGAGTTCCTCTGCTCAGGGCACTTCTTaGGTGGGCACACAGGTGGAG | + |
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Preference number: 4 (lower is better) Translates to: LKGRHQLLLWRHVRWSSSAQGTS*VGTQVE Trigger: CTCCACCTGTGTGCCCACCCAAGAAGTGCCCTGAGC...AGAGGAACTCCATCTCACATGCCTCCATAGCAACAACTGATGTCTTCCCTTCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047264.3 |
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| CDS-3UTR CCA 90 bp | CATCAGTTGTTGCTATGGAGGCATGTGAGATGGAGTTCCTCTTCTTCTCTTGGTGGTGGGCACTTCTGCTaGCATGGTGGAGGAGGTTGC | + |
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Preference number: 4 (lower is better) Translates to: HQLLLWRHVRWSSSSSLGGGHFC*HGGGGC Trigger: GCAACCTCCTCCACCATGCCAGCAGAAGTGCCCACC...ACCAAGAGAAGAAGAGGAACTCCATCTCACATGCCTCCATAGCAACAACTGATG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047264.3 |
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| CDS-3UTR CCA 90 bp | CTGAAGGGAAGACATCAGTTGTTGCTATGGAGGCATGTGAGATGGAGTTCCTCTAGGCTCAGGGCACTTTaGAGGAGGACAAGGTTCAGG | + |
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Preference number: 4 (lower is better) Translates to: LKGRHQLLLWRHVRWSSSRLRAL*RRTRFR Trigger: CCTGAACCTTGTCCTCCTCCAAAGTGCCCTGAGCCT...AGAGGAACTCCATCTCACATGCCTCCATAGCAACAACTGATGTCTTCCCTTCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047264.3 |
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| CDS-3UTR CCA 90 bp | AGGATCATTCTCTGCAGGCCCTTTACAGCAGCAGGATTATCATCTCAGGTTAATGCACTTCTGCTGGCATaGTGGAGGAGGTTGCACAGG | + |
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Preference number: 4 (lower is better) Translates to: RIILCRPFTAAGLSSQVNALLLA*WRRLHR Trigger: CCTGTGCAACCTCCTCCACCATGCCAGCAGAAGTGC...ATTAACCTGAGATGATAATCCTGCTGCTGTAAAGGGCCTGCAGAGAATGATCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047264.3 |
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| CDS-3UTR CCA 90 bp | CAGGATTATCATCTCAGGTTAATGCCTTCCCTATCAGAGATAATCACTGGCATGCTTCTGCTGGCATGGTaGAGGAGGTTGCACAGGAGG | + |
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Preference number: 4 (lower is better) Translates to: QDYHLRLMPSLSEIITGMLLLAW*RRLHRR Trigger: CCTCCTGTGCAACCTCCTCCACCATGCCAGCAGAAG...CATGCCAGTGATTATCTCTGATAGGGAAGGCATTAACCTGAGATGATAATCCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047264.3 |
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| CDS-3UTR GCA 90 bp | CAGAGAGATTTGAAAAATGGTCTACTGAACCATGCAAGAAGGATCATTCTCTGCTTGGGTGGGCACTTCTaGTGGCATGGTGGAGGAGGT | + |
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Preference number: 4 (lower is better) Translates to: QRDLKNGLLNHARRIILCLGGHF*WHGGGG Trigger: ACCTCCTCCACCATGCCAGCAGAAGTGCCCACCCAA...GCAGAGAATGATCCTTCTTGCATGGTTCAGTAGACCATTTTTCAAATCTCTCTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047264.3 |
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| CDS-3UTR CCA 90 bp | CAGGATTATCATCTCAGGTTAATGCCTTCCCTATCAGAGATAATCACTGGCATGAGGTTCAGGACACTGTaGAGGAGGACAAGGCTCAGG | + |
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Preference number: 4 (lower is better) Translates to: QDYHLRLMPSLSEIITGMRFRTL*RRTRLR Trigger: CCTGAGCCTTGTCCTCCTCCACAGTGTCCTGAACCT...CATGCCAGTGATTATCTCTGATAGGGAAGGCATTAACCTGAGATGATAATCCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047264.3 |
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| CDS-3UTR CCA 90 bp | AGATTTGAAAAATGGTCTACTGAACCATGCAAGAAGGATCATTCTCTGCAGGCCGGAGGGCATTTCTGCTaGTATGAGGGAGGGGGACAT | + |
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Preference number: 4 (lower is better) Translates to: RFEKWSTEPCKKDHSLQAGGHFC*YEGGGH Trigger: ATGTCCCCCTCCCTCATACCAGCAGAAATGCCCTCC...GGCCTGCAGAGAATGATCCTTCTTGCATGGTTCAGTAGACCATTTTTCAAATCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000047264.3 |
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| CDS-3UTR CCA 90 bp | AAAGTGACAGAGAGATTTGAAAAATGGTCTACTGAACCATGCAAGAAGGATCATTCACTTGCTTTTGGGTaGGCACTTCTGCTGGCATGG | + |
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Preference number: 4 (lower is better) Translates to: KVTERFEKWSTEPCKKDHSLAFG*ALLLAW Trigger: CCATGCCAGCAGAAGTGCCCACCCAAAAGCAAGTGA...ATGATCCTTCTTGCATGGTTCAGTAGACCATTTTTCAAATCTCTCTGTCACTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047264.3 |
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| CDS GCA 90 bp | CACTTCTGCTGGCATGGTGGAGGAGGTTGCACAGGAGGGCATTTCTaGTGGTATGAGGGAGGGGGACATGACTCAGGACAAGGCTCAGGG | + |
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Preference number: 5 (lower is better) Translates to: HFCWHGGGGCTGGHF*WYEGGGHDSGQGSG Trigger: CCCTGAGCCTTGTCCTGAGTCATGTCCCCCTCCCTCATACCAGCAGAAATGCCCTCCTGTGCAACCTCCTCCACCATGCCAGCAGAAGTG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047264.3 |
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| CDS CCA 90 bp | TTCTGCTGGCATGGTGGAGGAGGTTGCACAGGAGGGCATTTCTGCTaGTATGAGGGAGGGGGACATGACTCAGGACAAGGCTCAGGGCAC | + |
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Preference number: 5 (lower is better) Translates to: FCWHGGGGCTGGHFC*YEGGGHDSGQGSGH Trigger: GTGCCCTGAGCCTTGTCCTGAGTCATGTCCCCCTCCCTCATACCAGCAGAAATGCCCTCCTGTGCAACCTCCTCCACCATGCCAGCAGAA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047264.3 |
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| CDS CCA 72 bp | CATGGTGGAGGAGGTTGCACAGGAGGGCATTTCTGCTaGTATGAGGGAGGGGGACATGACTCAGGACAAGGC | + |
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Preference number: 6 (lower is better) Translates to: HGGGGCTGGHFC*YEGGGHDSGQG Trigger: GCCTTGTCCTGAGTCATGTCCCCCTCCCTCATACCAGCAGAAATGCCCTCCTGTGCAACCTCCTCCACCATG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047264.3 |
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| CDS GCA 72 bp | TGGCATGGTGGAGGAGGTTGCACAGGAGGGCATTTCTaGTGGTATGAGGGAGGGGGACATGACTCAGGACAA | + |
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Preference number: 6 (lower is better) Translates to: WHGGGGCTGGHF*WYEGGGHDSGQ Trigger: TTGTCCTGAGTCATGTCCCCCTCCCTCATACCAGCAGAAATGCCCTCCTGTGCAACCTCCTCCACCATGCCA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047264.3 |
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