Pregenerated sensors for SPRR2H (Mus musculus)
Ensembl gene IDs: ENSMUSG00000046259Ensembl transcript IDs: ENSMUST00000059845.2, ENSMUST00000191886.2
Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGGGAAATGACTTTCCTTTCAGGAGTTATCACAGGCACATGGAGGTaGAAGGCTGAAGTACAGGGGTTTCTTGGCATCCATGAATGGCTT | + |
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Preference number: 1 (lower is better) Translates to: REMTFLSGVITGTWR*KAEVQGFLGIHEWL Trigger: AAGCCATTCATGGATGCCAAGAAACCCCTGTACTTCAGCCTTCCACCTCCATGTGCCTGTGATAACTCCTGAAAGGAAAGTCATTTCCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059845.2 |
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| 3UTR TCA 90 bp | GGAAGGACTATTCTCAGTATCTGCTTGACAGCAAAAACAGGGAAATaGCTTTCCTTTCAGGAGTTATCACAGGCACATGGAGGTGGAAGG | + |
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Preference number: 1 (lower is better) Translates to: GRTILSICLTAKTGK*LSFQELSQAHGGGR Trigger: CCTTCCACCTCCATGTGCCTGTGATAACTCCTGAAAGGAAAGTCATTTCCCTGTTTTTGCTGTCAAGCAGATACTGAGAATAGTCCTTCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000059845.2 |
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| 3UTR CCA 90 bp | TTGGCATCCATGAATGGCTTTGGAGGGAAGATGGAGGTGTTGCTATaGAAGTACATGAGATGGATACTCTTCTCTTCCCCTTGTCATGAT | + |
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Preference number: 1 (lower is better) Translates to: LASMNGFGGKMEVLL*KYMRWILFSSPCHD Trigger: ATCATGACAAGGGGAAGAGAAGAGTATCCATCTCATGTACTTCCATAGCAACACCTCCATCTTCCCTCCAAAGCCATTCATGGATGCCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059845.2 ENSMUST00000191886.2 |
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| 3UTR CCA 90 bp | AAAAACAGGGAAATGACTTTCCTTTCAGGAGTTATCACAGGCACATaGAGGTGGAAGGCTGAAGTACAGGGGTTTCTTGGCATCCATGAA | + |
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Preference number: 1 (lower is better) Translates to: KNREMTFLSGVITGT*RWKAEVQGFLGIHE Trigger: TTCATGGATGCCAAGAAACCCCTGTACTTCAGCCTTCCACCTCCATGTGCCTGTGATAACTCCTGAAAGGAAAGTCATTTCCCTGTTTTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000059845.2 |
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| 3UTR-3UTR CCA 90 bp | AGACTGCTGCAACTCTTCCTTCTGAGCATCTGGGACAGTGAAGCGCTGAGGAAGACAGGCACATGGAGGTaGAAGGCTGAAGTACAGGGG | + |
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Preference number: 2 (lower is better) Translates to: RLLQLFLLSIWDSEALRKTGTWR*KAEVQG Trigger: CCCCTGTACTTCAGCCTTCCACCTCCATGTGCCTGT...CTTCCTCAGCGCTTCACTGTCCCAGATGCTCAGAAGGAAGAGTTGCAGCAGTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059845.2 |
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| 3UTR-3UTR CCA 90 bp | GGAAGGCTGAAGTACAGGGGTTTCTTGGCATCCATGAATGGCTTTGGAGGGAAGTGGAAGTACATGAGATaGATACTCTTCTCTTCCCCT | + |
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Preference number: 2 (lower is better) Translates to: GRLKYRGFLASMNGFGGKWKYMR*ILFSSP Trigger: AGGGGAAGAGAAGAGTATCCATCTCATGTACTTCCA...CTTCCCTCCAAAGCCATTCATGGATGCCAAGAAACCCCTGTACTTCAGCCTTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059845.2 ENSMUST00000191886.2 |
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| 3UTR CAA 90 bp | GGTTTCTTGGCATCCATGAATGGCTTTGGAGGGAAGATGGAGGTGTaGCTATGGAAGTACATGAGATGGATACTCTTCTCTTCCCCTTGT | + |
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Preference number: 2 (lower is better) Translates to: GFLASMNGFGGKMEV*LWKYMRWILFSSPC Trigger: ACAAGGGGAAGAGAAGAGTATCCATCTCATGTACTTCCATAGCAACACCTCCATCTTCCCTCCAAAGCCATTCATGGATGCCAAGAAACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059845.2 ENSMUST00000191886.2 |
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| 3UTR-3UTR CCA 90 bp | CAGGGAAATGACTTTCCTTTCAGGAGTTATCACAGGCACATGGAGGTGGAAGGCATGGAGGTGTTGCTATaGAAGTACATGAGATGGATA | + |
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Preference number: 2 (lower is better) Translates to: QGNDFPFRSYHRHMEVEGMEVLL*KYMRWI Trigger: TATCCATCTCATGTACTTCCATAGCAACACCTCCAT...GCCTTCCACCTCCATGTGCCTGTGATAACTCCTGAAAGGAAAGTCATTTCCCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059845.2 |
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| 3UTR-3UTR CCA 90 bp | CAGCAAAAACAGGGAAATGACTTTCCTTTCAGGAGTTATCACAGGCACATGGAGATCCATGAATGGCTTTaGAGGGAAGATGGAGGTGTT | + |
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Preference number: 2 (lower is better) Translates to: QQKQGNDFPFRSYHRHMEIHEWL*REDGGV Trigger: AACACCTCCATCTTCCCTCCAAAGCCATTCATGGAT...CTCCATGTGCCTGTGATAACTCCTGAAAGGAAAGTCATTTCCCTGTTTTTGCTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000059845.2 |
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| 3UTR-3UTR CAA 90 bp | GGAGGTGGAAGGCTGAAGTACAGGGGTTTCTTGGCATCCATGAATGGCTTTGGAGGGAAGATGGAGGTGTaGCTATGGAAGTACATGAGA | + |
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Preference number: 3 (lower is better) Translates to: GGGRLKYRGFLASMNGFGGKMEV*LWKYMR Trigger: TCTCATGTACTTCCATAGCAACACCTCCATCTTCCC...TCCAAAGCCATTCATGGATGCCAAGAAACCCCTGTACTTCAGCCTTCCACCTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059845.2 ENSMUST00000191886.2 |
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| 3UTR TCA 72 bp | ACTGCTGCAACTCTTCCTTCTGAGCATCTGGGACAGTaGAGCGCTGAGGAAGGACTATTCTCAGTATCTGCT | + |
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Preference number: 3 (lower is better) Translates to: TAATLPSEHLGQ*SAEEGLFSVSA Trigger: AGCAGATACTGAGAATAGTCCTTCCTCAGCGCTTCACTGTCCCAGATGCTCAGAAGGAAGAGTTGCAGCAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059845.2 |
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| 3UTR CCA 72 bp | ACTTTCCTTTCAGGAGTTATCACAGGCACATGGAGGTaGAAGGCTGAAGTACAGGGGTTTCTTGGCATCCAT | + |
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Preference number: 3 (lower is better) Translates to: TFLSGVITGTWR*KAEVQGFLGIH Trigger: ATGGATGCCAAGAAACCCCTGTACTTCAGCCTTCCACCTCCATGTGCCTGTGATAACTCCTGAAAGGAAAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059845.2 |
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| 3UTR CCA 72 bp | GAAATGACTTTCCTTTCAGGAGTTATCACAGGCACATaGAGGTGGAAGGCTGAAGTACAGGGGTTTCTTGGC | + |
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Preference number: 3 (lower is better) Translates to: EMTFLSGVITGT*RWKAEVQGFLG Trigger: GCCAAGAAACCCCTGTACTTCAGCCTTCCACCTCCATGTGCCTGTGATAACTCCTGAAAGGAAAGTCATTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059845.2 |
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| 3UTR CCA 72 bp | GAAGTACAGGGGTTTCTTGGCATCCATGAATGGCTTTaGAGGGAAGATGGAGGTGTTGCTATGGAAGTACAT | + |
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Preference number: 3 (lower is better) Translates to: EVQGFLGIHEWL*REDGGVAMEVH Trigger: ATGTACTTCCATAGCAACACCTCCATCTTCCCTCCAAAGCCATTCATGGATGCCAAGAAACCCCTGTACTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059845.2 ENSMUST00000191886.2 |
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| 3UTR TCA 72 bp | TTGGAGGGAAGATGGAGGTGTTGCTATGGAAGTACATaGGATGGATACTCTTCTCTTCCCCTTGTCATGATG | + |
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Preference number: 3 (lower is better) Translates to: LEGRWRCCYGST*DGYSSLPLVMM Trigger: CATCATGACAAGGGGAAGAGAAGAGTATCCATCTCATGTACTTCCATAGCAACACCTCCATCTTCCCTCCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059845.2 ENSMUST00000191886.2 |
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| 3UTR CCA 72 bp | ATGAATGGCTTTGGAGGGAAGATGGAGGTGTTGCTATaGAAGTACATGAGATGGATACTCTTCTCTTCCCCT | + |
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Preference number: 3 (lower is better) Translates to: MNGFGGKMEVLL*KYMRWILFSSP Trigger: AGGGGAAGAGAAGAGTATCCATCTCATGTACTTCCATAGCAACACCTCCATCTTCCCTCCAAAGCCATTCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059845.2 ENSMUST00000191886.2 |
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| 3UTR-3UTR CAA 90 bp | CAGCAAAAACAGGGAAATGACTTTCCTTTCAGGAGTTATCACAGGCACATGGAGAAGTACAGGGGTTTCTaGGCATCCATGAATGGCTTT | + |
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Preference number: 3 (lower is better) Translates to: QQKQGNDFPFRSYHRHMEKYRGF*ASMNGF Trigger: AAAGCCATTCATGGATGCCAAGAAACCCCTGTACTT...CTCCATGTGCCTGTGATAACTCCTGAAAGGAAAGTCATTTCCCTGTTTTTGCTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000059845.2 |
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| CDS-3UTR CCA 90 bp | TACAGGGGTTTCTTGGCATCCATGAATGGCTTTGGAGGGAAGATGGAGGTGTTGTGGGCACTGAGGGGGTaGGCACACAGGAGGAGGCTG | + |
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Preference number: 4 (lower is better) Translates to: YRGFLASMNGFGGKMEVLWALRG*AHRRRL Trigger: CAGCCTCCTCCTGTGTGCCCACCCCCTCAGTGCCCA...CAACACCTCCATCTTCCCTCCAAAGCCATTCATGGATGCCAAGAAACCCCTGTA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000059845.2 |
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| CDS-3UTR CCA 90 bp | CAGGGAAATGACTTTCCTTTCAGGAGTTATCACAGGCACATGGAGGTGGAAGGCGGGAGGACAAGGCTCTaGGCACTGAGGGGGTGGGCA | + |
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Preference number: 4 (lower is better) Translates to: QGNDFPFRSYHRHMEVEGGRTRL*ALRGWA Trigger: TGCCCACCCCCTCAGTGCCCAGAGCCTTGTCCTCCC...GCCTTCCACCTCCATGTGCCTGTGATAACTCCTGAAAGGAAAGTCATTTCCCTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000059845.2 |
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| CDS-3UTR GCA 90 bp | GGAAGGCTGAAGTACAGGGGTTTCTTGGCATCCATGAATGGCTTTGGAGGGAAGGGGGACATGGCTCAGTaGACTTTGGGGGAGGACAAG | + |
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Preference number: 4 (lower is better) Translates to: GRLKYRGFLASMNGFGGKGDMAQ*TLGEDK Trigger: CTTGTCCTCCCCCAAAGTGCACTGAGCCATGTCCCC...CTTCCCTCCAAAGCCATTCATGGATGCCAAGAAACCCCTGTACTTCAGCCTTCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000059845.2 |
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| CDS-3UTR CCA 90 bp | TTCTTGGCATCCATGAATGGCTTTGGAGGGAAGATGGAGGTGTTGCTATGGAAGGGGAGGACAAGGCTCTaGGCACTTTGGGGGAGGACA | + |
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Preference number: 4 (lower is better) Translates to: FLASMNGFGGKMEVLLWKGRTRL*ALWGRT Trigger: TGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCC...CTTCCATAGCAACACCTCCATCTTCCCTCCAAAGCCATTCATGGATGCCAAGAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000059845.2 |
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| CDS-3UTR TCA 90 bp | GGAGGTGGAAGGCTGAAGTACAGGGGTTTCTTGGCATCCATGAATGGCTTTGGAGGTGGACACTTCTGTTaGCATGGTGGAGAAGGTTGC | + |
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Preference number: 4 (lower is better) Translates to: GGGRLKYRGFLASMNGFGGGHFC*HGGEGC Trigger: GCAACCTTCTCCACCATGTCAACAGAAGTGTCCACC...TCCAAAGCCATTCATGGATGCCAAGAAACCCCTGTACTTCAGCCTTCCACCTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059845.2 ENSMUST00000191886.2 |
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| CDS-3UTR TCA 90 bp | AGGGGTTTCTTGGCATCCATGAATGGCTTTGGAGGGAAGATGGAGGTGTTGCTAGGTGGACACTTCTGTTaGCATGGTGGAGAAGGTTGC | + |
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Preference number: 4 (lower is better) Translates to: RGFLASMNGFGGKMEVLLGGHFC*HGGEGC Trigger: GCAACCTTCTCCACCATGTCAACAGAAGTGTCCACC...TAGCAACACCTCCATCTTCCCTCCAAAGCCATTCATGGATGCCAAGAAACCCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059845.2 ENSMUST00000191886.2 |
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| CDS-3UTR GCA 90 bp | GTACAGGGGTTTCTTGGCATCCATGAATGGCTTTGGAGGGAAGATGGAGGTGTTCATGGTGGAGAAGGTTaGACAGAAGGGCATTTCTGC | + |
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Preference number: 4 (lower is better) Translates to: VQGFLGIHEWLWREDGGVHGGEG*TEGHFC Trigger: GCAGAAATGCCCTTCTGTGCAACCTTCTCCACCATG...AACACCTCCATCTTCCCTCCAAAGCCATTCATGGATGCCAAGAAACCCCTGTAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059845.2 |
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| CDS-3UTR GCA 90 bp | GGAGGTGGAAGGCTGAAGTACAGGGGTTTCTTGGCATCCATGAATGGCTTTGGACATGGTGGAGAAGGTTaGACAGAAGGGCATTTAGGA | + |
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Preference number: 4 (lower is better) Translates to: GGGRLKYRGFLASMNGFGHGGEG*TEGHLG Trigger: TCCTAAATGCCCTTCTGTGCAACCTTCTCCACCATG...TCCAAAGCCATTCATGGATGCCAAGAAACCCCTGTACTTCAGCCTTCCACCTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000191886.2 |
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| CDS-3UTR CCA 90 bp | TTGGCATCCATGAATGGCTTTGGAGGGAAGATGGAGGTGTTGCTATGGAAGTACGAAGGGCATTTCTGCTaGTATGAGGGAGGGGGACAT | + |
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Preference number: 4 (lower is better) Translates to: LASMNGFGGKMEVLLWKYEGHFC*YEGGGH Trigger: ATGTCCCCCTCCCTCATACCAGCAGAAATGCCCTTC...GTACTTCCATAGCAACACCTCCATCTTCCCTCCAAAGCCATTCATGGATGCCAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000059845.2 |
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| CDS-3UTR CCA 90 bp | AGGCTGAAGTACAGGGGTTTCTTGGCATCCATGAATGGCTTTGGAGGGAAGATGCTTCTGTTGACATGGTaGAGAAGGTTGCACAGAAGG | + |
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Preference number: 4 (lower is better) Translates to: RLKYRGFLASMNGFGGKMLLLTW*RRLHRR Trigger: CCTTCTGTGCAACCTTCTCCACCATGTCAACAGAAG...CATCTTCCCTCCAAAGCCATTCATGGATGCCAAGAAACCCCTGTACTTCAGCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059845.2 ENSMUST00000191886.2 |
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| CDS-3UTR CCA 90 bp | AGGGGTTTCTTGGCATCCATGAATGGCTTTGGAGGGAAGATGGAGGTGTTGCTATCATTTGTTCTTGGGTaGACACTTCTGTTGACATGG | + |
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Preference number: 4 (lower is better) Translates to: RGFLASMNGFGGKMEVLLSFVLG*TLLLTW Trigger: CCATGTCAACAGAAGTGTCCACCCAAGAACAAATGA...TAGCAACACCTCCATCTTCCCTCCAAAGCCATTCATGGATGCCAAGAAACCCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059845.2 ENSMUST00000191886.2 |
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| CDS-3UTR CCA 90 bp | TTTCTTGGCATCCATGAATGGCTTTGGAGGGAAGATGGAGGTGTTGCTATGGAATCATTTGTTCTTGGGTaGACACTTCTGTTGACATGG | + |
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Preference number: 4 (lower is better) Translates to: FLGIHEWLWREDGGVAMESFVLG*TLLLTW Trigger: CCATGTCAACAGAAGTGTCCACCCAAGAACAAATGA...TTCCATAGCAACACCTCCATCTTCCCTCCAAAGCCATTCATGGATGCCAAGAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059845.2 ENSMUST00000191886.2 |
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| CDS-3UTR CAA 90 bp | GAACAGGGTAGACTGCTGCAACTCTTCCTTCTGAGCATCTGGGACAGTGAAGCGAAGGCTCAGTGCACTTaGGGGGAGGACAAGGCTCTG | + |
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Preference number: 5 (lower is better) Translates to: EQGRLLQLFLLSIWDSEAKAQCT*GEDKAL Trigger: CAGAGCCTTGTCCTCCCCCAAAGTGCACTGAGCCTT...CGCTTCACTGTCCCAGATGCTCAGAAGGAAGAGTTGCAGCAGTCTACCCTGTTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000059845.2 |
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| CDS-3UTR CAA 90 bp | TTCTTGGCATCCATGAATGGCTTTGGAGGGAAGATGGAGGTGTTGCTATGGAAGAAGGCTCTGGGCACTTaGGGGGAGGACAAGGCTCTG | + |
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Preference number: 5 (lower is better) Translates to: FLASMNGFGGKMEVLLWKKALGT*GEDKAL Trigger: CAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTT...CTTCCATAGCAACACCTCCATCTTCCCTCCAAAGCCATTCATGGATGCCAAGAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000059845.2 |
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| CDS-3UTR CAA 90 bp | TTGGCATCCATGAATGGCTTTGGAGGGAAGATGGAGGTGTTGCTATGGAAGTACAAGGCTCTGGGCACTTaGGGGGAGGACAAGGCTCAG | + |
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Preference number: 5 (lower is better) Translates to: LASMNGFGGKMEVLLWKYKALGT*GEDKAQ Trigger: CTGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTT...GTACTTCCATAGCAACACCTCCATCTTCCCTCCAAAGCCATTCATGGATGCCAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000059845.2 |
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| CDS-3UTR CAA 90 bp | GGCATCCATGAATGGCTTTGGAGGGAAGATGGAGGTGTTGCTATGGAAGTACATATGGCTCAGTGCACTTaGGGGGAGGACAAGGCTCTG | + |
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Preference number: 5 (lower is better) Translates to: GIHEWLWREDGGVAMEVHMAQCT*GEDKAL Trigger: CAGAGCCTTGTCCTCCCCCAAAGTGCACTGAGCCAT...ATGTACTTCCATAGCAACACCTCCATCTTCCCTCCAAAGCCATTCATGGATGCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000059845.2 |
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| CDS-3UTR CAA 90 bp | GGGTTTCTTGGCATCCATGAATGGCTTTGGAGGGAAGATGGAGGTGTTGCTATGACATGGTGGAGAAGGTaGCACAGAAGGGCATTTCTG | + |
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Preference number: 5 (lower is better) Translates to: GFLGIHEWLWREDGGVAMTWWRR*HRRAFL Trigger: CAGAAATGCCCTTCTGTGCAACCTTCTCCACCATGT...CATAGCAACACCTCCATCTTCCCTCCAAAGCCATTCATGGATGCCAAGAAACCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059845.2 |
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| CDS-3UTR CAA 90 bp | TTGGCATCCATGAATGGCTTTGGAGGGAAGATGGAGGTGTTGCTATGGAAGTACGGGTGGACACTTCTGTaGACATGGTGGAGAAGGTTG | + |
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Preference number: 5 (lower is better) Translates to: LASMNGFGGKMEVLLWKYGWTLL*TWWRRL Trigger: CAACCTTCTCCACCATGTCAACAGAAGTGTCCACCC...GTACTTCCATAGCAACACCTCCATCTTCCCTCCAAAGCCATTCATGGATGCCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059845.2 ENSMUST00000191886.2 |
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| CDS-3UTR CAA 90 bp | TTTCTTGGCATCCATGAATGGCTTTGGAGGGAAGATGGAGGTGTTGCTATGGAAGGGTGGACACTTCTGTaGACATGGTGGAGAAGGTTG | + |
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Preference number: 5 (lower is better) Translates to: FLGIHEWLWREDGGVAMEGWTLL*TWWRRL Trigger: CAACCTTCTCCACCATGTCAACAGAAGTGTCCACCC...TTCCATAGCAACACCTCCATCTTCCCTCCAAAGCCATTCATGGATGCCAAGAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059845.2 ENSMUST00000191886.2 |
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| CDS-3UTR CAA 90 bp | AAGGCTGAAGTACAGGGGTTTCTTGGCATCCATGAATGGCTTTGGAGGGAAGATACATGGTGGAGAAGGTaGCACAGAAGGGCATTTAGG | + |
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Preference number: 5 (lower is better) Translates to: KAEVQGFLGIHEWLWREDTWWRR*HRRAFR Trigger: CCTAAATGCCCTTCTGTGCAACCTTCTCCACCATGT...ATCTTCCCTCCAAAGCCATTCATGGATGCCAAGAAACCCCTGTACTTCAGCCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000191886.2 |
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| CDS CCA 72 bp | CATGGTGGAGAAGGTTGCACAGAAGGGCATTTCTGCTaGTATGAGGGAGGGGGACATGGCTCAGTGCACTTT | + |
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Preference number: 6 (lower is better) Translates to: HGGEGCTEGHFC*YEGGGHGSVHF Trigger: AAAGTGCACTGAGCCATGTCCCCCTCCCTCATACCAGCAGAAATGCCCTTCTGTGCAACCTTCTCCACCATG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000059845.2 |
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