Pregenerated sensors for SPRR2G (Mus musculus)
Ensembl gene IDs: ENSMUSG00000046203Ensembl transcript IDs: ENSMUST00000056590.6, ENSMUST00000189634.7
Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GACACACAGATTTGGAAACCATACTGTGAAGGCACTGAGGGACATCTACTAGTCGATGTAACAGGCATTTaGAAGATGAAGGGTAGAGAA | + |
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Preference number: 2 (lower is better) Translates to: DTQIWKPYCEGTEGHLLVDVTGI*KMKGRE Trigger: TTCTCTACCCTTCATCTTTCAAATGCCTGTTACATC...GACTAGTAGATGTCCCTCAGTGCCTTCACAGTATGGTTTCCAAATCTGTGTGTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056590.6 ENSMUST00000189634.7 |
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| 3UTR-3UTR TCA 90 bp | TGTGAAGGCACTGAGGGACATCTACTAGTCTTTCCTCTGAACATCTGGTATATGCAGGCATTTGAAAGATaGAGGGTAGAGAAGATTCAT | + |
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Preference number: 2 (lower is better) Translates to: CEGTEGHLLVFPLNIWYMQAFER*RVEKIH Trigger: ATGAATCTTCTCTACCCTTCATCTTTCAAATGCCTG...CATATACCAGATGTTCAGAGGAAAGACTAGTAGATGTCCCTCAGTGCCTTCACA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056590.6 ENSMUST00000189634.7 |
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| 3UTR-3UTR GCA 90 bp | TGTGAAGGCACTGAGGGACATCTACTAGTCTTTCCTCTGAACATCTGGTATATGACAGTCTCAGAAAAATaGCTTCCCTATAATGAGATG | + |
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Preference number: 2 (lower is better) Translates to: CEGTEGHLLVFPLNIWYMTVSEK*LPYNEM Trigger: CATCTCATTATAGGGAAGGCATTTTTCTGAGACTGT...CATATACCAGATGTTCAGAGGAAAGACTAGTAGATGTCCCTCAGTGCCTTCACA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000056590.6 ENSMUST00000189634.7 |
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| 3UTR-3UTR TCA 90 bp | CATCTACTAGTCTTTCCTCTGAACATCTGGTATATGAATCTATTGAAGGAGGATGATGTAACAGGCATTTaGAAGATGAAGGGTAGAGAA | + |
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Preference number: 2 (lower is better) Translates to: HLLVFPLNIWYMNLLKEDDVTGI*KMKGRE Trigger: TTCTCTACCCTTCATCTTTCAAATGCCTGTTACATC...ATCCTCCTTCAATAGATTCATATACCAGATGTTCAGAGGAAAGACTAGTAGATG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056590.6 ENSMUST00000189634.7 |
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| 3UTR-3UTR GCA 90 bp | CATCTACTAGTCTTTCCTCTGAACATCTGGTATATGAATCTATTGAAGGAGGATACAGTCTCAGAAAAATaGCTTCCCTATAATGAGATG | + |
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Preference number: 2 (lower is better) Translates to: HLLVFPLNIWYMNLLKEDTVSEK*LPYNEM Trigger: CATCTCATTATAGGGAAGGCATTTTTCTGAGACTGT...ATCCTCCTTCAATAGATTCATATACCAGATGTTCAGAGGAAAGACTAGTAGATG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000056590.6 ENSMUST00000189634.7 |
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| 3UTR CCA 72 bp | TTATTCAGCAAATGGAACATCCGTGACACACAGATTTaGAAACCATACTGTGAAGGCACTGAGGGACATCTA | + |
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Preference number: 3 (lower is better) Translates to: LFSKWNIRDTQI*KPYCEGTEGHL Trigger: TAGATGTCCCTCAGTGCCTTCACAGTATGGTTTCCAAATCTGTGTGTCACGGATGTTCCATTTGCTGAATAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056590.6 ENSMUST00000189634.7 |
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| CDS-3UTR CCA 90 bp | GGAACATCCGTGACACACAGATTTGGAAACCATACTGTGAAGGCACTGAGGGACGCACTTCTGCTGGCATaGTGGAGGAGTTTGCACAGG | + |
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Preference number: 4 (lower is better) Translates to: GTSVTHRFGNHTVKALRDALLLA*WRSLHR Trigger: CCTGTGCAAACTCCTCCACCATGCCAGCAGAAGTGC...GTCCCTCAGTGCCTTCACAGTATGGTTTCCAAATCTGTGTGTCACGGATGTTCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056590.6 ENSMUST00000189634.7 |
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| CDS-3UTR CCA 90 bp | TCCGTGACACACAGATTTGGAAACCATACTGTGAAGGCACTGAGGGACATCTACGGTGGGCACTTCTGCTaGCATGGTGGAGGAGTTTGC | + |
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Preference number: 4 (lower is better) Translates to: SVTHRFGNHTVKALRDIYGGHFC*HGGGVC Trigger: GCAAACTCCTCCACCATGCCAGCAGAAGTGCCCACC...GTAGATGTCCCTCAGTGCCTTCACAGTATGGTTTCCAAATCTGTGTGTCACGGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056590.6 ENSMUST00000189634.7 |
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| CDS-3UTR CCA 90 bp | TCCGTGACACACAGATTTGGAAACCATACTGTGAAGGCACTGAGGGACATCTACTGGAGAAGGAAGACATaGCTCGGGACAAGGTTCAGG | + |
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Preference number: 4 (lower is better) Translates to: SVTHRFGNHTVKALRDIYWRRKT*LGTRFR Trigger: CCTGAACCTTGTCCCGAGCCATGTCTTCCTTCTCCA...GTAGATGTCCCTCAGTGCCTTCACAGTATGGTTTCCAAATCTGTGTGTCACGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056590.6 ENSMUST00000189634.7 |
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| CDS-3UTR CCA 90 bp | GGAACATCCGTGACACACAGATTTGGAAACCATACTGTGAAGGCACTGAGGGACGCATTTCTGCTGGCATaGAGAAGGAAGACATGGCTC | + |
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Preference number: 4 (lower is better) Translates to: GTSVTHRFGNHTVKALRDAFLLA*RRKTWL Trigger: GAGCCATGTCTTCCTTCTCCATGCCAGCAGAAATGC...GTCCCTCAGTGCCTTCACAGTATGGTTTCCAAATCTGTGTGTCACGGATGTTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056590.6 ENSMUST00000189634.7 |
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| CDS-3UTR CCA 90 bp | GGAACATCCGTGACACACAGATTTGGAAACCATACTGTGAAGGCACTGAGGGACGGAGGGCATTTCTGCTaGCATGGAGAAGGAAGACAT | + |
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Preference number: 4 (lower is better) Translates to: GTSVTHRFGNHTVKALRDGGHFC*HGEGRH Trigger: ATGTCTTCCTTCTCCATGCCAGCAGAAATGCCCTCC...GTCCCTCAGTGCCTTCACAGTATGGTTTCCAAATCTGTGTGTCACGGATGTTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056590.6 ENSMUST00000189634.7 |
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| CDS-3UTR CCA 90 bp | TCAGCAAATGGAACATCCGTGACACACAGATTTGGAAACCATACTGTGAAGGCACTTCTGCTGGCATGGTaGAGGAGTTTGCACAGGAGG | + |
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Preference number: 4 (lower is better) Translates to: SANGTSVTHRFGNHTVKALLLAW*RSLHRR Trigger: CCTCCTGTGCAAACTCCTCCACCATGCCAGCAGAAG...TGCCTTCACAGTATGGTTTCCAAATCTGTGTGTCACGGATGTTCCATTTGCTGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056590.6 ENSMUST00000189634.7 |
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| CDS-3UTR CCA 90 bp | GACACACAGATTTGGAAACCATACTGTGAAGGCACTGAGGGACATCTACTAGTCGGAGGGCATTTCTGCTaGCATGGAGAAGGAAGACAT | + |
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Preference number: 4 (lower is better) Translates to: DTQIWKPYCEGTEGHLLVGGHFC*HGEGRH Trigger: ATGTCTTCCTTCTCCATGCCAGCAGAAATGCCCTCC...GACTAGTAGATGTCCCTCAGTGCCTTCACAGTATGGTTTCCAAATCTGTGTGTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056590.6 ENSMUST00000189634.7 |
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| CDS-3UTR CCA 90 bp | TGGTATATGAATCTATTGAAGGAGGATCATTCTCAGCATTCCATTGGGGGAAAAGGTGGGCACTTCTGCTaGCATGGTGGAGGAGTTTGC | + |
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Preference number: 4 (lower is better) Translates to: WYMNLLKEDHSQHSIGGKGGHFC*HGGGVC Trigger: GCAAACTCCTCCACCATGCCAGCAGAAGTGCCCACC...TTTTCCCCCAATGGAATGCTGAGAATGATCCTCCTTCAATAGATTCATATACCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000056590.6 ENSMUST00000189634.7 |
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| CDS-3UTR CCA 90 bp | TTTGCATCCAAGATGTCCTTTGAATGGAAGATAGAAGTATTGGTATGGAAGGACCTTCTGCTGGCATGGTaGAGGAGTTTGCACAGGAGG | + |
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Preference number: 4 (lower is better) Translates to: FASKMSFEWKIEVLVWKDLLLAW*RSLHRR Trigger: CCTCCTGTGCAAACTCCTCCACCATGCCAGCAGAAG...GTCCTTCCATACCAATACTTCTATCTTCCATTCAAAGGACATCTTGGATGCAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056590.6 ENSMUST00000189634.7 |
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| CDS-3UTR CCA 90 bp | CTACTAGTCTTTCCTCTGAACATCTGGTATATGAATCTATTGAAGGAGGATCATTGGAGAAGGAAGACATaGCTCGGGACAAGGTTCAGG | + |
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Preference number: 4 (lower is better) Translates to: LLVFPLNIWYMNLLKEDHWRRKT*LGTRFR Trigger: CCTGAACCTTGTCCCGAGCCATGTCTTCCTTCTCCA...ATGATCCTCCTTCAATAGATTCATATACCAGATGTTCAGAGGAAAGACTAGTAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056590.6 ENSMUST00000189634.7 |
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| CDS-3UTR CCA 90 bp | AGAGAAGATTCATTTGCATCCAAGATGTCCTTTGAATGGAAGATAGAAGTATTGGCACTTCTGCTGGCATaGTGGAGGAGTTTGCACAGG | + |
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Preference number: 4 (lower is better) Translates to: REDSFASKMSFEWKIEVLALLLA*WRSLHR Trigger: CCTGTGCAAACTCCTCCACCATGCCAGCAGAAGTGC...CAATACTTCTATCTTCCATTCAAAGGACATCTTGGATGCAAATGAATCTTCTCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056590.6 ENSMUST00000189634.7 |
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| 3UTR CAA 72 bp | CTAGTCTTTCCTCTGAACATCTGGTATATGAATCTATaGAAGGAGGATCATTCTCAGCATTCCATTGGGGGA | + |
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Preference number: 4 (lower is better) Translates to: LVFPLNIWYMNL*KEDHSQHSIGG Trigger: TCCCCCAATGGAATGCTGAGAATGATCCTCCTTCAATAGATTCATATACCAGATGTTCAGAGGAAAGACTAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000056590.6 ENSMUST00000189634.7 |
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| CDS CCA 90 bp | TTCTGCTGGCATGGTGGAGGAGTTTGCACAGGAGGGCATTTCTGCTaGCATGGAGAAGGAAGACATGGCTCGGGACAAGGTTCAGGACAC | + |
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Preference number: 5 (lower is better) Translates to: FCWHGGGVCTGGHFC*HGEGRHGSGQGSGH Trigger: GTGTCCTGAACCTTGTCCCGAGCCATGTCTTCCTTCTCCATGCCAGCAGAAATGCCCTCCTGTGCAAACTCCTCCACCATGCCAGCAGAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056590.6 ENSMUST00000189634.7 |
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| CDS CCA 90 bp | AGTTTGCACAGGAGGGCATTTCTGCTGGCATGGAGAAGGAAGACATaGCTCGGGACAAGGTTCAGGACACTTTGGAGGAGGACAAGGCTC | + |
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Preference number: 5 (lower is better) Translates to: SLHRRAFLLAWRRKT*LGTRFRTLWRRTRL Trigger: GAGCCTTGTCCTCCTCCAAAGTGTCCTGAACCTTGTCCCGAGCCATGTCTTCCTTCTCCATGCCAGCAGAAATGCCCTCCTGTGCAAACT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056590.6 ENSMUST00000189634.7 |
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| CDS-3UTR CAA 90 bp | GGAACATCCGTGACACACAGATTTGGAAACCATACTGTGAAGGCACTGAGGGACAAGGTTCAGGACACTTaGGAGGAGGACAAGGCTCAG | + |
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Preference number: 5 (lower is better) Translates to: GTSVTHRFGNHTVKALRDKVQDT*EEDKAQ Trigger: CTGAGCCTTGTCCTCCTCCAAAGTGTCCTGAACCTT...GTCCCTCAGTGCCTTCACAGTATGGTTTCCAAATCTGTGTGTCACGGATGTTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056590.6 ENSMUST00000189634.7 |
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| CDS-3UTR CAA 90 bp | TGGTATATGAATCTATTGAAGGAGGATCATTCTCAGCATTCCATTGGGGGAAAAAAGGTTCAGGACACTTaGGAGGAGGACAAGGCTCAG | + |
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Preference number: 5 (lower is better) Translates to: WYMNLLKEDHSQHSIGGKKVQDT*EEDKAQ Trigger: CTGAGCCTTGTCCTCCTCCAAAGTGTCCTGAACCTT...TTTTCCCCCAATGGAATGCTGAGAATGATCCTCCTTCAATAGATTCATATACCA 44% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt. Matches the following 2 transcripts: ENSMUST00000056590.6 ENSMUST00000189634.7 |
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| CDS-3UTR CAA 90 bp | TCATTTGCATCCAAGATGTCCTTTGAATGGAAGATAGAAGTATTGGTATGGAAGGCATGGTGGAGGAGTTaGCACAGGAGGGCATTTCTG | + |
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Preference number: 5 (lower is better) Translates to: SFASKMSFEWKIEVLVWKAWWRS*HRRAFL Trigger: CAGAAATGCCCTCCTGTGCAAACTCCTCCACCATGC...CTTCCATACCAATACTTCTATCTTCCATTCAAAGGACATCTTGGATGCAAATGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056590.6 ENSMUST00000189634.7 |
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| CDS-3UTR CAA 90 bp | AGAGAAGATTCATTTGCATCCAAGATGTCCTTTGAATGGAAGATAGAAGTATTGGCATGGTGGAGGAGTTaGCACAGGAGGGCATTTCTG | + |
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Preference number: 5 (lower is better) Translates to: REDSFASKMSFEWKIEVLAWWRS*HRRAFL Trigger: CAGAAATGCCCTCCTGTGCAAACTCCTCCACCATGC...CAATACTTCTATCTTCCATTCAAAGGACATCTTGGATGCAAATGAATCTTCTCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056590.6 ENSMUST00000189634.7 |
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| CDS CCA 72 bp | AGGAGGGCATTTCTGCTGGCATGGAGAAGGAAGACATaGCTCGGGACAAGGTTCAGGACACTTTGGAGGAGG | + |
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Preference number: 6 (lower is better) Translates to: RRAFLLAWRRKT*LGTRFRTLWRR Trigger: CCTCCTCCAAAGTGTCCTGAACCTTGTCCCGAGCCATGTCTTCCTTCTCCATGCCAGCAGAAATGCCCTCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056590.6 ENSMUST00000189634.7 |
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| CDS CCA 72 bp | CATGGTGGAGGAGTTTGCACAGGAGGGCATTTCTGCTaGCATGGAGAAGGAAGACATGGCTCGGGACAAGGT | + |
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Preference number: 6 (lower is better) Translates to: HGGGVCTGGHFC*HGEGRHGSGQG Trigger: ACCTTGTCCCGAGCCATGTCTTCCTTCTCCATGCCAGCAGAAATGCCCTCCTGTGCAAACTCCTCCACCATG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056590.6 ENSMUST00000189634.7 |
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