Pregenerated sensors for SPRR2F (Mus musculus)

Ensembl gene IDs: ENSMUSG00000050635

Ensembl transcript IDs: ENSMUST00000050397.2

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR CCA 90 bp	CCTGCTCAAGTGACAGAGAGATTTGAAAAATGTCATACTGAACAATaGAACAAGACCCATTCTCTAGAGCCCCTTTACAGCAGCAAGATT	+
Preference number: 1 (lower is better) Translates to: PAQVTERFEKCHTEQ*NKTHSLEPLYSSKI Trigger: AATCTTGCTGCTGTAAAGGGGCTCTAGAGAATGGGTCTTGTTCCATTGTTCAGTATGACATTTTTCAAATCTCTCTGTCACTTGAGCAGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000050397.2
CDS-3UTR GCA 90 bp	TGCATCCATGTCAGACTTTGGAGGGAAGATAAGGTGTTGCTATGGAATGACATGCAGGGTGGAGGAGGTTaGACAGGAGGGCATTTCTGC	+
Preference number: 4 (lower is better) Translates to: CIHVRLWREDKVLLWNDMQGGGG*TGGHFC Trigger: GCAGAAATGCCCTCCTGTGCAACCTCCTCCACCCTG...CATGTCATTCCATAGCAACACCTTATCTTCCCTCCAAAGTCTGACATGGATGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050397.2
CDS-3UTR TCA 90 bp	AAATGTCATACTGAACAATGGAACAAGACCCATTCTCTAGAGCCCCTTTACAGCGCATTTCTGCTGGAATaGGGGAGGGGGACATGGCTC	+
Preference number: 4 (lower is better) Translates to: KCHTEQWNKTHSLEPLYSAFLLE*GRGTWL Trigger: GAGCCATGTCCCCCTCCCTCATTCCAGCAGAAATGC...GCTGTAAAGGGGCTCTAGAGAATGGGTCTTGTTCCATTGTTCAGTATGACATTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000050397.2
CDS-3UTR CCA 90 bp	TCTGCATCCATGTCAGACTTTGGAGGGAAGATAAGGTGTTGCTATGGAATGACAGGAGGGCATTTCTGCTaGAATGAGGGAGGGGGACAT	+
Preference number: 4 (lower is better) Translates to: SASMSDFGGKIRCCYGMTGGHFC*NEGGGH Trigger: ATGTCCCCCTCCCTCATTCCAGCAGAAATGCCCTCC...TGTCATTCCATAGCAACACCTTATCTTCCCTCCAAAGTCTGACATGGATGCAGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000050397.2
CDS-3UTR GCA 90 bp	AAATGTCATACTGAACAATGGAACAAGACCCATTCTCTAGAGCCCCTTTACAGCACAGGAGGGCATTTCTaGTGGAATGAGGGAGGGGGA	+
Preference number: 4 (lower is better) Translates to: KCHTEQWNKTHSLEPLYSTGGHF*WNEGGG Trigger: TCCCCCTCCCTCATTCCAGCAGAAATGCCCTCCTGT...GCTGTAAAGGGGCTCTAGAGAATGGGTCTTGTTCCATTGTTCAGTATGACATTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000050397.2
CDS-3UTR GCA 90 bp	AGAGAAAATTCTTCTGCATCCATGTCAGACTTTGGAGGGAAGATAAGGTGTTGCGCTGGCAGGGTTGCTTaGACTGCTGTTCTTGGTAAG	+
Preference number: 4 (lower is better) Translates to: RENSSASMSDFGGKIRCCAGRVA*TAVLGK Trigger: CTTACCAAGAACAGCAGTGCAAGCAACCCTGCCAGC...GCAACACCTTATCTTCCCTCCAAAGTCTGACATGGATGCAGAAGAATTTTCTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050397.2
CDS CCA 72 bp	CAGGGTGGAGGAGGTTGCACAGGAGGGCATTTCTGCTaGAATGAGGGAGGGGGACATGGCTCAGGACAAGGC	+
Preference number: 6 (lower is better) Translates to: QGGGGCTGGHFC*NEGGGHGSGQG Trigger: GCCTTGTCCTGAGCCATGTCCCCCTCCCTCATTCCAGCAGAAATGCCCTCCTGTGCAACCTCCTCCACCCTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000050397.2

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu