RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SPRR2E (Mus musculus)

Ensembl gene IDs: ENSMUSG00000055030

Ensembl transcript IDs: ENSMUST00000068399.2

Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TTTGGGACACTGAACAACTTGAGAACATATAATCAGCAGCCTGTATaGGAGAAATGGCAGGACAACCTAAGGAAAATGCCTTCCCTAAAA +
Preference number: 1 (lower is better)
Translates to: FGTLNNLRTYNQQPV*EKWQDNLRKMPSLK
Trigger: TTTTAGGGAAGGCATTTTCCTTAGGTTGTCCTGCCATTTCTCTCATACAGGCTGCTGATTATATGTTCTCAAGTTGTTCAGTGTCCCAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068399.2
3UTR-3UTR TCA 90 bp ACAGTTTTGGAAAACATCTTCTGGGTGCACAGGATAGACAGCAGGTGTTATTCTGAGAGGATTCACCCATaGCAGCCTTTGGAGGGAAGA +
Preference number: 2 (lower is better)
Translates to: TVLENIFWVHRIDSRCYSERIHP*QPLEGR
Trigger: TCTTCCCTCCAAAGGCTGTCATGGGTGAATCCTCTC...AGAATAACACCTGCTGTCTATCCTGTGCACCCAGAAGATGTTTTCCAAAACTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068399.2
3UTR-3UTR TCA 90 bp ACAGTTTTGGAAAACATCTTCTGGGTGCACAGGATAGACAGCAGGTGTTATTCTACAGGCAAATGGGAGTaGCAGGTAGAGAGGATTCAC +
Preference number: 2 (lower is better)
Translates to: TVLENIFWVHRIDSRCYSTGKWE*QVERIH
Trigger: GTGAATCCTCTCTACCTGTCACTCCCATTTGCCTGT...AGAATAACACCTGCTGTCTATCCTGTGCACCCAGAAGATGTTTTCCAAAACTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068399.2
3UTR-3UTR TCA 90 bp TTTGGAAAACATCTTCTGGGTGCACAGGATAGACAGCAGGTGTTATTCTTTCTGAATCAGCAGCCTGTATaGGAGAAATGGCAGGACAAC +
Preference number: 2 (lower is better)
Translates to: FGKHLLGAQDRQQVLFFLNQQPV*EKWQDN
Trigger: GTTGTCCTGCCATTTCTCTCATACAGGCTGCTGATT...CAGAAAGAATAACACCTGCTGTCTATCCTGTGCACCCAGAAGATGTTTTCCAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068399.2
3UTR-3UTR CCA 90 bp ATGACAACACAACAATTGACAGTTTTGGAAAACATCTTCTGGGTGCACAGGATAACCCATGACAGCCTTTaGAGGGAAGATGGAGGTGTT +
Preference number: 2 (lower is better)
Translates to: MTTQQLTVLENIFWVHRITHDSL*REDGGV
Trigger: AACACCTCCATCTTCCCTCCAAAGGCTGTCATGGGT...TATCCTGTGCACCCAGAAGATGTTTTCCAAAACTGTCAATTGTTGTGTTGTCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068399.2
3UTR TCA 72 bp TTGGAGGGAAGATGGAGGTGTTGCTTTGGAAGTACATaGGATAGATTCTCTTCTCTTCCCCTTGTCCCGATG +
Preference number: 3 (lower is better)
Translates to: LEGRWRCCFGST*DRFSSLPLVPM
Trigger: CATCGGGACAAGGGGAAGAGAAGAGAATCTATCTCATGTACTTCCAAAGCAACACCTCCATCTTCCCTCCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068399.2
3UTR-3UTR CAA 90 bp TTTGGAAAACATCTTCTGGGTGCACAGGATAGACAGCAGGTGTTATTCTTTCTGGGGAAGATGGAGGTGTaGCTTTGGAAGTACATGAGA +
Preference number: 3 (lower is better)
Translates to: FGKHLLGAQDRQQVLFFLGKMEV*LWKYMR
Trigger: TCTCATGTACTTCCAAAGCAACACCTCCATCTTCCC...CAGAAAGAATAACACCTGCTGTCTATCCTGTGCACCCAGAAGATGTTTTCCAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068399.2
3UTR TCA 72 bp TGGGTGCACAGGATAGACAGCAGGTGTTATTCTTTCTaGGCATTTGGGACACTGAACAACTTGAGAACATAT +
Preference number: 3 (lower is better)
Translates to: WVHRIDSRCYSF*AFGTLNNLRTY
Trigger: ATATGTTCTCAAGTTGTTCAGTGTCCCAAATGCTCAGAAAGAATAACACCTGCTGTCTATCCTGTGCACCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068399.2
3UTR-3UTR CAA 90 bp ACAACAATTGACAGTTTTGGAAAACATCTTCTGGGTGCACAGGATAGACAGCAGGATGGAGGTGTTGCTTaGGAAGTACATGAGATAGAT +
Preference number: 3 (lower is better)
Translates to: TTIDSFGKHLLGAQDRQQDGGVA*EVHEID
Trigger: ATCTATCTCATGTACTTCCAAAGCAACACCTCCATC...CTGCTGTCTATCCTGTGCACCCAGAAGATGTTTTCCAAAACTGTCAATTGTTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068399.2
3UTR-3UTR CAA 90 bp AACAATGACAACACAACAATTGACAGTTTTGGAAAACATCTTCTGGGTGCACAGGGGACACTGAACAACTaGAGAACATATAATCAGCAG +
Preference number: 3 (lower is better)
Translates to: NNDNTTIDSFGKHLLGAQGTLNN*RTYNQQ
Trigger: CTGCTGATTATATGTTCTCAAGTTGTTCAGTGTCCC...CTGTGCACCCAGAAGATGTTTTCCAAAACTGTCAATTGTTGTGTTGTCATTGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000068399.2
3UTR CCA 72 bp ACAACACAACAATTGACAGTTTTGGAAAACATCTTCTaGGTGCACAGGATAGACAGCAGGTGTTATTCTTTC +
Preference number: 3 (lower is better)
Translates to: TTQQLTVLENIF*VHRIDSRCYSF
Trigger: GAAAGAATAACACCTGCTGTCTATCCTGTGCACCCAGAAGATGTTTTCCAAAACTGTCAATTGTTGTGTTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068399.2
CDS-3UTR TCA 90 bp TACAGGCAAATGGGAGTGACAGGTAGAGAGGATTCACCCATGACAGCCTTTGGATCAGGACACTGTGGATaGGGACAAGGCTCAGGGCAC +
Preference number: 4 (lower is better)
Translates to: YRQMGVTGREDSPMTAFGSGHCG*GQGSGH
Trigger: GTGCCCTGAGCCTTGTCCTCATCCACAGTGTCCTGA...TCCAAAGGCTGTCATGGGTGAATCCTCTCTACCTGTCACTCCCATTTGCCTGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068399.2
CDS-3UTR CCA 90 bp TACAGGCAAATGGGAGTGACAGGTAGAGAGGATTCACCCATGACAGCCTTTGGAGCACTTCTGTTGACATaGTGGAGGAGGTTGCACAGG +
Preference number: 4 (lower is better)
Translates to: YRQMGVTGREDSPMTAFGALLLT*WRRLHR
Trigger: CCTGTGCAACCTCCTCCACCATGTCAACAGAAGTGC...TCCAAAGGCTGTCATGGGTGAATCCTCTCTACCTGTCACTCCCATTTGCCTGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068399.2
CDS-3UTR CCA 90 bp TACAGGCAAATGGGAGTGACAGGTAGAGAGGATTCACCCATGACAGCCTTTGGATCACTTGCTCTTGGGTaGGCACTTCTGTTGACATGG +
Preference number: 4 (lower is better)
Translates to: YRQMGVTGREDSPMTAFGSLALG*ALLLTW
Trigger: CCATGTCAACAGAAGTGCCCACCCAAGAGCAAGTGA...TCCAAAGGCTGTCATGGGTGAATCCTCTCTACCTGTCACTCCCATTTGCCTGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068399.2
CDS-3UTR TCA 90 bp CAGGATAGACAGCAGGTGTTATTCTTTCTGAGCATTTGGGACACTGAACAACTTGGTGGGCACTTCTGTTaGCATGGTGGAGGAGGTTGC +
Preference number: 4 (lower is better)
Translates to: QDRQQVLFFLSIWDTEQLGGHFC*HGGGGC
Trigger: GCAACCTCCTCCACCATGTCAACAGAAGTGCCCACC...AAGTTGTTCAGTGTCCCAAATGCTCAGAAAGAATAACACCTGCTGTCTATCCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068399.2
CDS-3UTR CCA 90 bp CAGGATAGACAGCAGGTGTTATTCTTTCTGAGCATTTGGGACACTGAACAACTTAGGCTCAGGACACTGTaGATGAGGACAAGGCTCAGG +
Preference number: 4 (lower is better)
Translates to: QDRQQVLFFLSIWDTEQLRLRTL*MRTRLR
Trigger: CCTGAGCCTTGTCCTCATCCACAGTGTCCTGAGCCT...AAGTTGTTCAGTGTCCCAAATGCTCAGAAAGAATAACACCTGCTGTCTATCCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068399.2
CDS-3UTR CCA 90 bp ACAACAATTGACAGTTTTGGAAAACATCTTCTGGGTGCACAGGATAGACAGCAGGGAGGGCATTTCTGCTaGTATGAGGGAGGAGGACAT +
Preference number: 4 (lower is better)
Translates to: TTIDSFGKHLLGAQDRQQGGHFC*YEGGGH
Trigger: ATGTCCTCCTCCCTCATACCAGCAGAAATGCCCTCC...CTGCTGTCTATCCTGTGCACCCAGAAGATGTTTTCCAAAACTGTCAATTGTTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068399.2
CDS-3UTR GCA 90 bp AACAATGACAACACAACAATTGACAGTTTTGGAAAACATCTTCTGGGTGCACAGCATGGTGGAGGAGGTTaGACAGGAGGGCATTTCTGC +
Preference number: 4 (lower is better)
Translates to: NNDNTTIDSFGKHLLGAQHGGGG*TGGHFC
Trigger: GCAGAAATGCCCTCCTGTGCAACCTCCTCCACCATG...CTGTGCACCCAGAAGATGTTTTCCAAAACTGTCAATTGTTGTGTTGTCATTGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068399.2
CDS-3UTR CAA 90 bp GACAACACAACAATTGACAGTTTTGGAAAACATCTTCTGGGTGCACAGGATAGAGGCTCAGGGCACTTCTaGGGTGGGCACACAGGTGGA +
Preference number: 5 (lower is better)
Translates to: DNTTIDSFGKHLLGAQDRGSGHF*GGHTGG
Trigger: TCCACCTGTGTGCCCACCCAAGAAGTGCCCTGAGCC...TCTATCCTGTGCACCCAGAAGATGTTTTCCAAAACTGTCAATTGTTGTGTTGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068399.2