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Pregenerated sensors for SPRR2D (Mus musculus)

Ensembl gene IDs: ENSMUSG00000042212

Ensembl transcript IDs: ENSMUST00000047477.4

Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ATCTTCCCTGTTAGGGGACATCACAGGAACATGGAGGGTGAAAGGTaGAGGAGATTCCTCTGCAATCATGCCAGGATTTGGAAGGAAGAT +
Preference number: 1 (lower is better)
Translates to: IFPVRGHHRNMEGER*RRFLCNHARIWKED
Trigger: ATCTTCCTTCCAAATCCTGGCATGATTGCAGAGGAATCTCCTTCACCTTTCACCCTCCATGTTCCTGTGATGTCCCCTAACAGGGAAGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047477.4
3UTR-3UTR CCA 90 bp CAACTTCGGGGAAACATCTTCCCTGTTAGGGGACATCACAGGAACATGGAGGGTGATTTGGAAGGAAGATaGGTGTTGCTTTGGAAGTAC +
Preference number: 2 (lower is better)
Translates to: QLRGNIFPVRGHHRNMEGDLEGR*VLLWKY
Trigger: GTACTTCCAAAGCAACACCCATCTTCCTTCCAAATC...ACCCTCCATGTTCCTGTGATGTCCCCTAACAGGGAAGATGTTTCCCCGAAGTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047477.4
3UTR TCA 72 bp GTTAGGGGACATCACAGGAACATGGAGGGTGAAAGGTaGAGGAGATTCCTCTGCAATCATGCCAGGATTTGG +
Preference number: 3 (lower is better)
Translates to: VRGHHRNMEGER*RRFLCNHARIW
Trigger: CCAAATCCTGGCATGATTGCAGAGGAATCTCCTTCACCTTTCACCCTCCATGTTCCTGTGATGTCCCCTAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047477.4
3UTR TCA 72 bp ATAGCAGCTATAGTTCCCACTGAGCACCTGGGATACTaGATAACTGAGGACAGATCATTCTCTGCAGCCCCT +
Preference number: 3 (lower is better)
Translates to: IAAIVPTEHLGY*ITEDRSFSAAP
Trigger: AGGGGCTGCAGAGAATGATCTGTCCTCAGTTATTCAGTATCCCAGGTGCTCAGTGGGAACTATAGCTGCTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047477.4
3UTR CCA 72 bp GAAACATCTTCCCTGTTAGGGGACATCACAGGAACATaGAGGGTGAAAGGTGAAGGAGATTCCTCTGCAATC +
Preference number: 3 (lower is better)
Translates to: ETSSLLGDITGT*RVKGEGDSSAI
Trigger: GATTGCAGAGGAATCTCCTTCACCTTTCACCCTCCATGTTCCTGTGATGTCCCCTAACAGGGAAGATGTTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047477.4
3UTR TCA 72 bp ATTTGGAAGGAAGATGGGTGTTGCTTTGGAAGTACATaGGATAGATTCTCTTCTTTTCCCTTTGTCCTGATG +
Preference number: 3 (lower is better)
Translates to: IWKEDGCCFGST*DRFSSFPFVLM
Trigger: CATCAGGACAAAGGGAAAAGAAGAGAATCTATCTCATGTACTTCCAAAGCAACACCCATCTTCCTTCCAAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047477.4
CDS-3UTR TCA 90 bp CAACTTCGGGGAAACATCTTCCCTGTTAGGGGACATCACAGGAACATGGAGGGTGCATTTCTGCTGGCATaGGGGAGGGGGACATGGCTC +
Preference number: 4 (lower is better)
Translates to: QLRGNIFPVRGHHRNMEGAFLLA*GRGTWL
Trigger: GAGCCATGTCCCCCTCCCTCATGCCAGCAGAAATGC...ACCCTCCATGTTCCTGTGATGTCCCCTAACAGGGAAGATGTTTCCCCGAAGTTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000047477.4
CDS-3UTR GCA 90 bp CAACTTCGGGGAAACATCTTCCCTGTTAGGGGACATCACAGGAACATGGAGGGTTTAGGTGGGCACTTCTaGTGGCAGGGTGGAGGAGGT +
Preference number: 4 (lower is better)
Translates to: QLRGNIFPVRGHHRNMEGLGGHF*WQGGGG
Trigger: ACCTCCTCCACCCTGCCAGCAGAAGTGCCCACCTAA...ACCCTCCATGTTCCTGTGATGTCCCCTAACAGGGAAGATGTTTCCCCGAAGTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047477.4
CDS-3UTR CCA 90 bp AAAGCAGGACAACTTCGGGGAAACATCTTCCCTGTTAGGGGACATCACAGGAACGGAGGGCATTTCTGCTaGCATGAGGGAGGGGGACAT +
Preference number: 4 (lower is better)
Translates to: KAGQLRGNIFPVRGHHRNGGHFC*HEGGGH
Trigger: ATGTCCCCCTCCCTCATGCCAGCAGAAATGCCCTCC...GTTCCTGTGATGTCCCCTAACAGGGAAGATGTTTCCCCGAAGTTGTCCTGCTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000047477.4
CDS-3UTR CCA 90 bp AGGAGATTCCTCTGCAATCATGCCAGGATTTGGAAGGAAGATGGGTGTTGCTTTGGTGGGCACTTCTGCTaGCAGGGTGGAGGAGGTTGC +
Preference number: 4 (lower is better)
Translates to: RRFLCNHARIWKEDGCCFGGHFC*QGGGGC
Trigger: GCAACCTCCTCCACCCTGCCAGCAGAAGTGCCCACC...AAAGCAACACCCATCTTCCTTCCAAATCCTGGCATGATTGCAGAGGAATCTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047477.4
CDS-3UTR GCA 90 bp AGGAGATTCCTCTGCAATCATGCCAGGATTTGGAAGGAAGATGGGTGTTGCTTTGCAGGAGGGCATTTCTaGTGGCATGAGGGAGGGGGA +
Preference number: 4 (lower is better)
Translates to: RRFLCNHARIWKEDGCCFAGGHF*WHEGGG
Trigger: TCCCCCTCCCTCATGCCAGCAGAAATGCCCTCCTGC...AAAGCAACACCCATCTTCCTTCCAAATCCTGGCATGATTGCAGAGGAATCTCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047477.4
CDS-3UTR GCA 90 bp TTCCTCTGCAATCATGCCAGGATTTGGAAGGAAGATGGGTGTTGCTTTGGAAGTCAGGGTGGAGGAGGTTaGGCAGGAGGGCATTTCTGC +
Preference number: 4 (lower is better)
Translates to: FLCNHARIWKEDGCCFGSQGGGG*AGGHFC
Trigger: GCAGAAATGCCCTCCTGCGCAACCTCCTCCACCCTG...ACTTCCAAAGCAACACCCATCTTCCTTCCAAATCCTGGCATGATTGCAGAGGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047477.4
CDS-3UTR CCA 90 bp TTCCTCTGCAATCATGCCAGGATTTGGAAGGAAGATGGGTGTTGCTTTGGAAGTCTCAGGGCACTTTGGTaGAGGACAAGGCTCAGGACA +
Preference number: 4 (lower is better)
Translates to: FLCNHARIWKEDGCCFGSLRALW*RTRLRT
Trigger: TGTCCTGAGCCTTGTCCTCCACCAAAGTGCCCTGAG...ACTTCCAAAGCAACACCCATCTTCCTTCCAAATCCTGGCATGATTGCAGAGGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047477.4
CDS-3UTR CCA 90 bp TCTGCAATCATGCCAGGATTTGGAAGGAAGATGGGTGTTGCTTTGGAAGTACATAGGCTCTGGGCATTTTaGAGGAGGACAAGGCTCAGG +
Preference number: 4 (lower is better)
Translates to: SAIMPGFGRKMGVALEVHRLWAF*RRTRLR
Trigger: CCTGAGCCTTGTCCTCCTCCAAAATGCCCAGAGCCT...ATGTACTTCCAAAGCAACACCCATCTTCCTTCCAAATCCTGGCATGATTGCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047477.4
3UTR CAA 72 bp AAGGTGAAGGAGATTCCTCTGCAATCATGCCAGGATTaGGAAGGAAGATGGGTGTTGCTTTGGAAGTACATG +
Preference number: 4 (lower is better)
Translates to: KVKEIPLQSCQD*EGRWVLLWKYM
Trigger: CATGTACTTCCAAAGCAACACCCATCTTCCTTCCAAATCCTGGCATGATTGCAGAGGAATCTCCTTCACCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047477.4
3UTR CAA 72 bp ATCATGCCAGGATTTGGAAGGAAGATGGGTGTTGCTTaGGAAGTACATGAGATAGATTCTCTTCTTTTCCCT +
Preference number: 4 (lower is better)
Translates to: IMPGFGRKMGVA*EVHEIDSLLFP
Trigger: AGGGAAAAGAAGAGAATCTATCTCATGTACTTCCAAAGCAACACCCATCTTCCTTCCAAATCCTGGCATGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047477.4
CDS-3UTR CAA 90 bp CAACTTCGGGGAAACATCTTCCCTGTTAGGGGACATCACAGGAACATGGAGGGTGCAGGGTGGAGGAGGTaGCGCAGGAGGGCATTTCTG +
Preference number: 5 (lower is better)
Translates to: QLRGNIFPVRGHHRNMEGAGWRR*RRRAFL
Trigger: CAGAAATGCCCTCCTGCGCAACCTCCTCCACCCTGC...ACCCTCCATGTTCCTGTGATGTCCCCTAACAGGGAAGATGTTTCCCCGAAGTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047477.4
CDS-3UTR CAA 90 bp AAAGCAGGACAACTTCGGGGAAACATCTTCCCTGTTAGGGGACATCACAGGAACAAGGCTCTGGGCATTTaGGAGGAGGACAAGGCTCAG +
Preference number: 5 (lower is better)
Translates to: KAGQLRGNIFPVRGHHRNKALGI*EEDKAQ
Trigger: CTGAGCCTTGTCCTCCTCCAAAATGCCCAGAGCCTT...GTTCCTGTGATGTCCCCTAACAGGGAAGATGTTTCCCCGAAGTTGTCCTGCTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047477.4