RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SPRR2B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000050092

Ensembl transcript IDs: ENSMUST00000061038.4

Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GACCATTGCCCTGATCAGGTAACAGGCAGGCTGAGAAGGCTCCTCTaGAAGCACACAGTAGATACCTGTTGTGCTTCCACTGGTGTACTG +
Preference number: 1 (lower is better)
Translates to: DHCPDQVTGRLRRLL*KHTVDTCCASTGVL
Trigger: CAGTACACCAGTGGAAGCACAACAGGTATCTACTGTGTGCTTTCAGAGGAGCCTTCTCAGCCTGCCTGTTACCTGATCAGGGCAATGGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061038.4
3UTR TCA 90 bp AGGACAGGCGTTCAAAGGAGGATGGAAGTGTTGCTATGGAGTTGGTaGGCCAGTGAGACAGATTTCTCTTACTTCCCAGTCCTGATGACT +
Preference number: 1 (lower is better)
Translates to: RTGVQRRMEVLLWSW*ASETDFSYFPVLMT
Trigger: AGTCATCAGGACTGGGAAGTAAGAGAAATCTGTCTCACTGGCTCACCAACTCCATAGCAACACTTCCATCCTCCTTTGAACGCCTGTCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061038.4
3UTR GCA 90 bp AGCCATCATAAGCACATGGAGGATGAAGGGTGGAGAAGATTCTTCTaGATCCAGGACAGGCGTTCAAAGGAGGATGGAAGTGTTGCTATG +
Preference number: 1 (lower is better)
Translates to: SHHKHMEDEGWRRFF*IQDRRSKEDGSVAM
Trigger: CATAGCAACACTTCCATCCTCCTTTGAACGCCTGTCCTGGATGCAGAAGAATCTTCTCCACCCTTCATCCTCCATGTGCTTATGATGGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061038.4
3UTR GCA 90 bp ATTCTTCTGCATCCAGGACAGGCGTTCAAAGGAGGATGGAAGTGTTaGTATGGAGTTGGTGAGCCAGTGAGACAGATTTCTCTTACTTCC +
Preference number: 1 (lower is better)
Translates to: ILLHPGQAFKGGWKC*YGVGEPVRQISLTS
Trigger: GGAAGTAAGAGAAATCTGTCTCACTGGCTCACCAACTCCATAGCAACACTTCCATCCTCCTTTGAACGCCTGTCCTGGATGCAGAAGAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061038.4
3UTR GCA 90 bp CAGGCTGAGAAGGCTCCTCTGAAAGCACACAGTAGATACCTGTTGTaGTTCCACTGGTGTACTGAAACAAGAGAAAAGATCATTCTCAGC +
Preference number: 1 (lower is better)
Translates to: QAEKAPLKAHSRYLL*FHWCTETREKIILS
Trigger: GCTGAGAATGATCTTTTCTCTTGTTTCAGTACACCAGTGGAAGCACAACAGGTATCTACTGTGTGCTTTCAGAGGAGCCTTCTCAGCCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061038.4
3UTR CCA 90 bp AAGGCTCCTCTGAAAGCACACAGTAGATACCTGTTGTGCTTCCACTaGTGTACTGAAACAAGAGAAAAGATCATTCTCAGCATCCCCAGG +
Preference number: 1 (lower is better)
Translates to: KAPLKAHSRYLLCFH*CTETREKIILSIPR
Trigger: CCTGGGGATGCTGAGAATGATCTTTTCTCTTGTTTCAGTACACCAGTGGAAGCACAACAGGTATCTACTGTGTGCTTTCAGAGGAGCCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061038.4
3UTR-3UTR GCA 90 bp GAAAAGATCATTCTCAGCATCCCCAGGAAAGCAGCAGGAGATCAGCCTGAGAGAGGAGGATGGAAGTGTTaGTATGGAGTTGGTGAGCCA +
Preference number: 2 (lower is better)
Translates to: EKIILSIPRKAAGDQPERGGWKC*YGVGEP
Trigger: TGGCTCACCAACTCCATAGCAACACTTCCATCCTCC...TCTCTCAGGCTGATCTCCTGCTGCTTTCCTGGGGATGCTGAGAATGATCTTTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061038.4
3UTR-3UTR TCA 90 bp GATCAGCCTGAGAGAAATGCCTTCTCTGTGAGGAGCCATCATAAGCACATGGAGTTGCTATGGAGTTGGTaGGCCAGTGAGACAGATTTC +
Preference number: 2 (lower is better)
Translates to: DQPERNAFSVRSHHKHMELLWSW*ASETDF
Trigger: GAAATCTGTCTCACTGGCTCACCAACTCCATAGCAA...CTCCATGTGCTTATGATGGCTCCTCACAGAGAAGGCATTTCTCTCAGGCTGATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061038.4
3UTR CAA 90 bp AGGCAGGCTGAGAAGGCTCCTCTGAAAGCACACAGTAGATACCTGTaGTGCTTCCACTGGTGTACTGAAACAAGAGAAAAGATCATTCTC +
Preference number: 2 (lower is better)
Translates to: RQAEKAPLKAHSRYL*CFHWCTETREKIIL
Trigger: GAGAATGATCTTTTCTCTTGTTTCAGTACACCAGTGGAAGCACAACAGGTATCTACTGTGTGCTTTCAGAGGAGCCTTCTCAGCCTGCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061038.4
3UTR-3UTR TCA 90 bp TCTGTGAGGAGCCATCATAAGCACATGGAGGATGAAGGGTGGAGAAGATTCTTCGAGTTGGTGAGCCAGTaGGACAGATTTCTCTTACTT +
Preference number: 2 (lower is better)
Translates to: SVRSHHKHMEDEGWRRFFELVSQ*DRFLLL
Trigger: AAGTAAGAGAAATCTGTCTCACTGGCTCACCAACTC...GAAGAATCTTCTCCACCCTTCATCCTCCATGTGCTTATGATGGCTCCTCACAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061038.4
3UTR-3UTR CCA 90 bp CACTGGTGTACTGAAACAAGAGAAAAGATCATTCTCAGCATCCCCAGGAAAGCAGCCATCATAAGCACATaGAGGATGAAGGGTGGAGAA +
Preference number: 2 (lower is better)
Translates to: HWCTETREKIILSIPRKAAIIST*RMKGGE
Trigger: TTCTCCACCCTTCATCCTCCATGTGCTTATGATGGC...TGCTTTCCTGGGGATGCTGAGAATGATCTTTTCTCTTGTTTCAGTACACCAGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061038.4
3UTR TCA 72 bp CAGCAGGAGATCAGCCTGAGAGAAATGCCTTCTCTGTaGGGAGCCATCATAAGCACATGGAGGATGAAGGGT +
Preference number: 3 (lower is better)
Translates to: QQEISLREMPSL*GAIISTWRMKG
Trigger: ACCCTTCATCCTCCATGTGCTTATGATGGCTCCTCACAGAGAAGGCATTTCTCTCAGGCTGATCTCCTGCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061038.4
3UTR TCA 72 bp CCTGATCAGGTAACAGGCAGGCTGAGAAGGCTCCTCTaGAAGCACACAGTAGATACCTGTTGTGCTTCCACT +
Preference number: 3 (lower is better)
Translates to: PDQVTGRLRRLL*KHTVDTCCAST
Trigger: AGTGGAAGCACAACAGGTATCTACTGTGTGCTTTCAGAGGAGCCTTCTCAGCCTGCCTGTTACCTGATCAGG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061038.4
3UTR GCA 72 bp CATCCAGGACAGGCGTTCAAAGGAGGATGGAAGTGTTaGTATGGAGTTGGTGAGCCAGTGAGACAGATTTCT +
Preference number: 3 (lower is better)
Translates to: HPGQAFKGGWKC*YGVGEPVRQIS
Trigger: AGAAATCTGTCTCACTGGCTCACCAACTCCATAGCAACACTTCCATCCTCCTTTGAACGCCTGTCCTGGATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061038.4
3UTR CCA 72 bp ATTCTTCTGCATCCAGGACAGGCGTTCAAAGGAGGATaGAAGTGTTGCTATGGAGTTGGTGAGCCAGTGAGA +
Preference number: 3 (lower is better)
Translates to: ILLHPGQAFKGG*KCCYGVGEPVR
Trigger: TCTCACTGGCTCACCAACTCCATAGCAACACTTCCATCCTCCTTTGAACGCCTGTCCTGGATGCAGAAGAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061038.4
3UTR TCA 72 bp GAGGATGGAAGTGTTGCTATGGAGTTGGTGAGCCAGTaGGACAGATTTCTCTTACTTCCCAGTCCTGATGAC +
Preference number: 3 (lower is better)
Translates to: EDGSVAMELVSQ*DRFLLLPSPDD
Trigger: GTCATCAGGACTGGGAAGTAAGAGAAATCTGTCTCACTGGCTCACCAACTCCATAGCAACACTTCCATCCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061038.4
3UTR TCA 72 bp GTTCAAAGGAGGATGGAAGTGTTGCTATGGAGTTGGTaGGCCAGTGAGACAGATTTCTCTTACTTCCCAGTC +
Preference number: 3 (lower is better)
Translates to: VQRRMEVLLWSW*ASETDFSYFPV
Trigger: GACTGGGAAGTAAGAGAAATCTGTCTCACTGGCTCACCAACTCCATAGCAACACTTCCATCCTCCTTTGAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061038.4
3UTR CCA 72 bp CTGAAAGCACACAGTAGATACCTGTTGTGCTTCCACTaGTGTACTGAAACAAGAGAAAAGATCATTCTCAGC +
Preference number: 3 (lower is better)
Translates to: LKAHSRYLLCFH*CTETREKIILS
Trigger: GCTGAGAATGATCTTTTCTCTTGTTTCAGTACACCAGTGGAAGCACAACAGGTATCTACTGTGTGCTTTCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061038.4
CDS-3UTR GCA 90 bp ATCCAGGACAGGCGTTCAAAGGAGGATGGAAGTGTTGCTATGGAGTTGGTGAGCTGGCATGGTGGAAATTaGACAGGAGGGCATTTTGGC +
Preference number: 4 (lower is better)
Translates to: IQDRRSKEDGSVAMELVSWHGGN*TGGHFG
Trigger: GCCAAAATGCCCTCCTGTGCAATTTCCACCATGCCA...GCTCACCAACTCCATAGCAACACTTCCATCCTCCTTTGAACGCCTGTCCTGGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061038.4
CDS-3UTR CCA 90 bp ATTCTCAGCATCCCCAGGAAAGCAGCAGGAGATCAGCCTGAGAGAAATGCCTTCACACTTCTGCTGGCATaGTGGAAATTGCACAGGAGG +
Preference number: 4 (lower is better)
Translates to: ILSIPRKAAGDQPERNAFTLLLA*WKLHRR
Trigger: CCTCCTGTGCAATTTCCACCATGCCAGCAGAAGTGT...GAAGGCATTTCTCTCAGGCTGATCTCCTGCTGCTTTCCTGGGGATGCTGAGAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061038.4
CDS-3UTR GCA 90 bp CAAGAGAAAAGATCATTCTCAGCATCCCCAGGAAAGCAGCAGGAGATCAGCCTGTTGGGTGGACACTTCTaGTGGCATGGTGGAAATTGC +
Preference number: 4 (lower is better)
Translates to: QEKRSFSASPGKQQEISLLGGHF*WHGGNC
Trigger: GCAATTTCCACCATGCCAGCAGAAGTGTCCACCCAA...CAGGCTGATCTCCTGCTGCTTTCCTGGGGATGCTGAGAATGATCTTTTCTCTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061038.4
CDS-3UTR CCA 90 bp GATACCTGTTGTGCTTCCACTGGTGTACTGAAACAAGAGAAAAGATCATTCTCACACAGGAGGGCATTTTaGCTGCCATGGCTGAGGGGG +
Preference number: 4 (lower is better)
Translates to: DTCCASTGVLKQEKRSFSHRRAF*LPWLRG
Trigger: CCCCCTCAGCCATGGCAGCCAAAATGCCCTCCTGTG...TGAGAATGATCTTTTCTCTTGTTTCAGTACACCAGTGGAAGCACAACAGGTATC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061038.4
CDS-3UTR CCA 90 bp TTCTTCTGCATCCAGGACAGGCGTTCAAAGGAGGATGGAAGTGTTGCTATGGAGTCATTTATTCTTGGGTaGACACTTCTGCTGGCATGG +
Preference number: 4 (lower is better)
Translates to: FFCIQDRRSKEDGSVAMESFILG*TLLLAW
Trigger: CCATGCCAGCAGAAGTGTCCACCCAAGAATAAATGA...CTCCATAGCAACACTTCCATCCTCCTTTGAACGCCTGTCCTGGATGCAGAAGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061038.4
CDS-3UTR CAA 90 bp AGAAGATTCTTCTGCATCCAGGACAGGCGTTCAAAGGAGGATGGAAGTGTTGCTGCACAGGAGGGCATTTaGGCTGCCATGGCTGAGGGG +
Preference number: 5 (lower is better)
Translates to: RRFFCIQDRRSKEDGSVAAQEGI*AAMAEG
Trigger: CCCCTCAGCCATGGCAGCCAAAATGCCCTCCTGTGC...AGCAACACTTCCATCCTCCTTTGAACGCCTGTCCTGGATGCAGAAGAATCTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061038.4
CDS-3UTR CAA 90 bp TCTGTGAGGAGCCATCATAAGCACATGGAGGATGAAGGGTGGAGAAGATTCTTCCTGGCATGGTGGAAATaGCACAGGAGGGCATTTTGG +
Preference number: 5 (lower is better)
Translates to: SVRSHHKHMEDEGWRRFFLAWWK*HRRAFW
Trigger: CCAAAATGCCCTCCTGTGCAATTTCCACCATGCCAG...GAAGAATCTTCTCCACCCTTCATCCTCCATGTGCTTATGATGGCTCCTCACAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061038.4