Pregenerated sensors for SPRR2A2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000068893Ensembl transcript IDs: ENSMUST00000071805.4, ENSMUST00000090871.3
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CCACTATGTCTTCAGCTGCCATTAACCATGTTATTCTGTAAAGACTaGCTTCCAGAAGCTAAGAATGAGGAAGGTCGTAATGTACAGGAT | + |
|
Preference number: 1 (lower is better) Translates to: PLCLQLPLTMLFCKD*LPEAKNEEGRNVQD Trigger: ATCCTGTACATTACGACCTTCCTCATTCTTAGCTTCTGGAAGCCAGTCTTTACAGAATAACATGGTTAATGGCAGCTGAAGACATAGTGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071805.4 |
||
| 3UTR CCA 90 bp | GTAGATGTCTGCTTACTCTCTAAGATGCAATTAATTGGTGACACATaGGAGACAGGTAGAATTTTCATTGAAGATTTTATATCAGAAAGG | + |
|
Preference number: 1 (lower is better) Translates to: VDVCLLSKMQLIGDT*ETGRIFIEDFISER Trigger: CCTTTCTGATATAAAATCTTCAATGAAAATTCTACCTGTCTCCCATGTGTCACCAATTAATTGCATCTTAGAGAGTAAGCAGACATCTAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071805.4 |
||
| 3UTR CAA 90 bp | CTCGGGCAGTGTGACCCAAGATGGCCATCTTCCATTGCTTCTGCCTaGTGTGTTTCATGTCTCTCTGTGGCTTATCCTTCCCAAGGGGAC | + |
|
Preference number: 2 (lower is better) Translates to: LGQCDPRWPSSIASA*CVSCLSVAYPSQGD Trigger: GTCCCCTTGGGAAGGATAAGCCACAGAGAGACATGAAACACACAAGGCAGAAGCAATGGAAGATGGCCATCTTGGGTCACACTGCCCGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071805.4 |
||
| 3UTR CAA 90 bp | AAGTCAGGGATTCCTTGCCTTCAGAACTTTGATCAAGTTGTTTCTTaGGGAATCCCCAGTAACTTCTTAACTCCACTATGTCTTCAGCTG | + |
|
Preference number: 2 (lower is better) Translates to: KSGIPCLQNFDQVVS*GIPSNFLTPLCLQL Trigger: CAGCTGAAGACATAGTGGAGTTAAGAAGTTACTGGGGATTCCCAAAGAAACAACTTGATCAAAGTTCTGAAGGCAAGGAATCCCTGACTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071805.4 |
||
| 3UTR-3UTR GCA 90 bp | CAGGGATTCCTTGCCTTCAGAACTTTGATCAAGTTGTTTCTTTGGGAATCCCCATTGACCTCTCAAAAATaGTTTTCTACCCATTTCTTC | + |
|
Preference number: 2 (lower is better) Translates to: QGFLAFRTLIKLFLWESPLTSQK*FSTHFF Trigger: GAAGAAATGGGTAGAAAAGCATTTTTGAGAGGTCAA...TGGGGATTCCCAAAGAAACAACTTGATCAAAGTTCTGAAGGCAAGGAATCCCTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000071805.4 |
||
| 3UTR TCA 72 bp | GAGGATGGAAGTGTTGCTATGGAGTCGGTGAGCTGGTaGGACAGATTTCTTTCACTTCCCCTGGTCCTGATG | + |
|
Preference number: 3 (lower is better) Translates to: EDGSVAMESVSW*DRFLSLPLVLM Trigger: CATCAGGACCAGGGGAAGTGAAAGAAATCTGTCTCACCAGCTCACCGACTCCATAGCAACACTTCCATCCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000071805.4 ENSMUST00000090871.3 |
||
| 3UTR CCA 72 bp | CCATTGCTTCTGCCTTGTGTGTTTCATGTCTCTCTGTaGCTTATCCTTCCCAAGGGGACACCTGTTCAAGTC | + |
|
Preference number: 3 (lower is better) Translates to: PLLLPCVFHVSL*LILPKGTPVQV Trigger: GACTTGAACAGGTGTCCCCTTGGGAAGGATAAGCCACAGAGAGACATGAAACACACAAGGCAGAAGCAATGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071805.4 |
||
| 3UTR TCA 72 bp | TTTCAAAGGAGGATGGAAGTGTTGCTATGGAGTCGGTaGGCTGGTGAGACAGATTTCTTTCACTTCCCCTGG | + |
|
Preference number: 3 (lower is better) Translates to: FQRRMEVLLWSR*AGETDFFHFPW Trigger: CCAGGGGAAGTGAAAGAAATCTGTCTCACCAGCTCACCGACTCCATAGCAACACTTCCATCCTCCTTTGAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000071805.4 ENSMUST00000090871.3 |
||
| 3UTR CCA 72 bp | CTGAAAGCACAGAGTAGATACCTGTTGTGCTTCCCCTaGTGTACAAAAACAAGAGAAAGGATCATTCTCAGC | + |
|
Preference number: 3 (lower is better) Translates to: LKAQSRYLLCFP*CTKTRERIILS Trigger: GCTGAGAATGATCCTTTCTCTTGTTTTTGTACACCAGGGGAAGCACAACAGGTATCTACTCTGTGCTTTCAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000071805.4 ENSMUST00000090871.3 |
||
| 3UTR CCA 72 bp | TTTCTGCCTGAATCTCATCAGTGCCTGAAGCTCACTTaGAGATTCCTCTGTAATGTAAAGTCAGGGATTCCT | + |
|
Preference number: 3 (lower is better) Translates to: FLPESHQCLKLT*RFLCNVKSGIP Trigger: AGGAATCCCTGACTTTACATTACAGAGGAATCTCCAAGTGAGCTTCAGGCACTGATGAGATTCAGGCAGAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071805.4 |
||
| 3UTR CCA 72 bp | CTTCAGCTGCCATTAACCATGTTATTCTGTAAAGACTaGCTTCCAGAAGCTAAGAATGAGGAAGGTCGTAAT | + |
|
Preference number: 3 (lower is better) Translates to: LQLPLTMLFCKD*LPEAKNEEGRN Trigger: ATTACGACCTTCCTCATTCTTAGCTTCTGGAAGCCAGTCTTTACAGAATAACATGGTTAATGGCAGCTGAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071805.4 |
||
| 3UTR TCA 72 bp | TTGTCGTATATGTTTAATGGTAACAGGAAAAGCATGTaGGAACAGGCTTTATATGCTTTCTCGGGCAGTGTG | + |
|
Preference number: 3 (lower is better) Translates to: LSYMFNGNRKSM*EQALYAFSGSV Trigger: CACACTGCCCGAGAAAGCATATAAAGCCTGTTCTCACATGCTTTTCCTGTTACCATTAAACATATACGACAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071805.4 |
||