Pregenerated sensors for SPRR2A1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000078664

Ensembl transcript IDs: ENSMUST00000074449.7

Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR TCA 90 bp	GACCATTGCCCTGATCAGGTAACAGGCAGGCTGAGAAGGCTCCTCTaGAAGCACAGAGTAGATACCTGTTGTGCTTCCCCTGGTGTACAA	+
Preference number: 1 (lower is better) Translates to: DHCPDQVTGRLRRLL*KHRVDTCCASPGVQ Trigger: TTGTACACCAGGGGAAGCACAACAGGTATCTACTCTGTGCTTTCAGAGGAGCCTTCTCAGCCTGCCTGTTACCTGATCAGGGCAATGGTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074449.7
3UTR TCA 90 bp	CTTTCAAAGGAGGATGGAAGTGTTGCTATGGAGTCGGTGAGCTGGTaGGACAGATTTCTTTCACTTCCCCTGGTCCTGATGACTGGGAGG	+
Preference number: 1 (lower is better) Translates to: LSKEDGSVAMESVSW*DRFLSLPLVLMTGR Trigger: CCTCCCAGTCATCAGGACCAGGGGAAGTGAAAGAAATCTGTCTCACCAGCTCACCGACTCCATAGCAACACTTCCATCCTCCTTTGAAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074449.7
3UTR GCA 90 bp	AGCCATCATAAGCACATGGAGGATGAAGGGTGGAGAAGATTCTTCTaGATCCAGACAGGCTTTCAAAGGAGGATGGAAGTGTTGCTATGG	+
Preference number: 1 (lower is better) Translates to: SHHKHMEDEGWRRFF*IQTGFQRRMEVLLW Trigger: CCATAGCAACACTTCCATCCTCCTTTGAAAGCCTGTCTGGATGCAGAAGAATCTTCTCCACCCTTCATCCTCCATGTGCTTATGATGGCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074449.7
3UTR GCA 90 bp	AAGCTCACTTGGAGATTCCTCTGTAATGTAAAGTCAGGGATTCCTTaGCTTCAGAACTTTGATCAAGTTGTTTCTTTGGGAATCCCCAGT	+
Preference number: 1 (lower is better) Translates to: KLTWRFLCNVKSGIP*LQNFDQVVSLGIPS Trigger: ACTGGGGATTCCCAAAGAAACAACTTGATCAAAGTTCTGAAGGCAAGGAATCCCTGACTTTACATTACAGAGGAATCTCCAAGTGAGCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074449.7
3UTR TCA 90 bp	TCTTTTGTCCTAGCACCTATAATATTTTTACAGCCTCTTGGAATCTaGGTAGTAGATGTCTGCTTACTCTCTAAGATGCAATTAATTGGT	+
Preference number: 1 (lower is better) Translates to: SFVLAPIIFLQPLGI*VVDVCLLSKMQLIG Trigger: ACCAATTAATTGCATCTTAGAGAGTAAGCAGACATCTACTACTCAGATTCCAAGAGGCTGTAAAAATATTATAGGTGCTAGGACAAAAGA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000074449.7
3UTR GCA 72 bp	GCATCCAGACAGGCTTTCAAAGGAGGATGGAAGTGTTaGTATGGAGTCGGTGAGCTGGTGAGACAGATTTCT	+
Preference number: 3 (lower is better) Translates to: ASRQAFKGGWKC*YGVGELVRQIS Trigger: AGAAATCTGTCTCACCAGCTCACCGACTCCATAGCAACACTTCCATCCTCCTTTGAAAGCCTGTCTGGATGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074449.7
3UTR GCA 72 bp	AAGGCTCCTCTGAAAGCACAGAGTAGATACCTGTTGTaGTTCCCCTGGTGTACAAAAACAAGAGAAAGGATC	+
Preference number: 3 (lower is better) Translates to: KAPLKAQSRYLL*FPWCTKTRERI Trigger: GATCCTTTCTCTTGTTTTTGTACACCAGGGGAAGCACAACAGGTATCTACTCTGTGCTTTCAGAGGAGCCTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000074449.7
3UTR GCA 72 bp	GAGGTTTTGCCTAAATTTCTGCCTGAATCTCATCAGTaGCTGAAGCTCACTTGGAGATTCCTCTGTAATGTA	+
Preference number: 3 (lower is better) Translates to: EVLPKFLPESHQ*LKLTWRFLCNV Trigger: TACATTACAGAGGAATCTCCAAGTGAGCTTCAGGCACTGATGAGATTCAGGCAGAAATTTAGGCAAAACCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074449.7
3UTR GCA 72 bp	TGGAGATTCCTCTGTAATGTAAAGTCAGGGATTCCTTaGCTTCAGAACTTTGATCAAGTTGTTTCTTTGGGA	+
Preference number: 3 (lower is better) Translates to: WRFLCNVKSGIP*LQNFDQVVSLG Trigger: TCCCAAAGAAACAACTTGATCAAAGTTCTGAAGGCAAGGAATCCCTGACTTTACATTACAGAGGAATCTCCA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074449.7
3UTR TCA 72 bp	TTGTCGTATATGTTTAATGATAACAGGAAAAGCATGTaGGAACAGGCTTTATATGCTTTCTCGGGCAGTGTG	+
Preference number: 3 (lower is better) Translates to: LSYMFNDNRKSM*EQALYAFSGSV Trigger: CACACTGCCCGAGAAAGCATATAAAGCCTGTTCTCACATGCTTTTCCTGTTATCATTAAACATATACGACAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074449.7
3UTR CAA 72 bp	TTCTCGGGCAGTGTGACCCAAGATGGCCATCTTCCATaGCTTCTGCCTTGTGTGTTTCATGTCTCTCTGTGG	+
Preference number: 4 (lower is better) Translates to: FSGSVTQDGHLP*LLPCVFHVSLW Trigger: CCACAGAGAGACATGAAACACACAAGGCAGAAGCAATGGAAGATGGCCATCTTGGGTCACACTGCCCGAGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074449.7
3UTR CAA 72 bp	ATTCCTTGCCTTCAGAACTTTGATCAAGTTGTTTCTTaGGGAATCCCCAGTAACTTCTTAACTCCACTATGT	+
Preference number: 4 (lower is better) Translates to: IPCLQNFDQVVS*GIPSNFLTPLC Trigger: ACATAGTGGAGTTAAGAAGTTACTGGGGATTCCCAAAGAAACAACTTGATCAAAGTTCTGAAGGCAAGGAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074449.7