Pregenerated sensors for SPRR1B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000048455Ensembl transcript IDs: ENSMUST00000062160.4
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CAA 90 bp | ATGAGAAGTGGGACTGTGATATTAGGGCATAGTATATTCAAACAGAATGCAAATGCTCAGCATCTATTGTaGATCATCTCCCCAAGGCAC | + |
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Preference number: 3 (lower is better) Translates to: MRSGTVILGHSIFKQNANAQHLL*IISPRH Trigger: GTGCCTTGGGGAGATGATCAACAATAGATGCTGAGC...ATTTGCATTCTGTTTGAATATACTATGCCCTAATATCACAGTCCCACTTCTCAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062160.4 |
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| 3UTR TCA 72 bp | ATATTAGGGCATAGTATATTCAAACAGAATGCAAATTaGGGCTCAGCATCTATTGTTGATCATCTCCCCAAG | + |
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Preference number: 3 (lower is better) Translates to: ILGHSIFKQNAN*GSASIVDHLPK Trigger: CTTGGGGAGATGATCAACAATAGATGCTGAGCCTCAATTTGCATTCTGTTTGAATATACTATGCCCTAATAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062160.4 |
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| CDS-3UTR CCA 90 bp | ATGAGAAGTGGGACTGTGATATTAGGGCATAGTATATTCAAACAGAATGCAAATTCAGGAGCCTTGGGATaGCAGGGCTCAGGAGCCTTG | + |
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Preference number: 4 (lower is better) Translates to: MRSGTVILGHSIFKQNANSGALG*QGSGAL Trigger: CAAGGCTCCTGAGCCCTGCCATCCCAAGGCTCCTGA...ATTTGCATTCTGTTTGAATATACTATGCCCTAATATCACAGTCCCACTTCTCAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062160.4 |
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| CDS-3UTR CCA 90 bp | ATGAGAAGTGGGACTGTGATATTAGGGCATAGTATATTCAAACAGAATGCAAATTGGCTCAGGAGGTGGTaGCTGGCAAGGCTGTTTCAC | + |
|
Preference number: 4 (lower is better) Translates to: MRSGTVILGHSIFKQNANWLRRW*LARLFH Trigger: GTGAAACAGCCTTGCCAGCCACCACCTCCTGAGCCA...ATTTGCATTCTGTTTGAATATACTATGCCCTAATATCACAGTCCCACTTCTCAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062160.4 |
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| CDS-3UTR GCA 90 bp | ATGAGAAGTGGGACTGTGATATTAGGGCATAGTATATTCAAACAGAATGCAAATACTGTGGAGGAGCTGTaGAGGGCTGCTTCTGCTGAT | + |
|
Preference number: 4 (lower is better) Translates to: MRSGTVILGHSIFKQNANTVEEL*RAASAD Trigger: ATCAGCAGAAGCAGCCCTGCACAGCTCCTCCACAGT...ATTTGCATTCTGTTTGAATATACTATGCCCTAATATCACAGTCCCACTTCTCAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062160.4 |
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| CDS-3UTR CCA 90 bp | ATGAGAAGTGGGACTGTGATATTAGGGCATAGTATATTCAAACAGAATGCAAATTTGCTCATGCAACTGTaGAGGAGCTGTGCAGGGCTG | + |
|
Preference number: 4 (lower is better) Translates to: MRSGTVILGHSIFKQNANLLMQL*RSCAGL Trigger: CAGCCCTGCACAGCTCCTCCACAGTTGCATGAGCAA...ATTTGCATTCTGTTTGAATATACTATGCCCTAATATCACAGTCCCACTTCTCAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062160.4 |
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| CDS-3UTR CCA 90 bp | ATGAGAAGTGGGACTGTGATATTAGGGCATAGTATATTCAAACAGAATGCAAATACATGGCTCAGGAGGTaGTGGCTGGCAAGGCTGTTT | + |
|
Preference number: 4 (lower is better) Translates to: MRSGTVILGHSIFKQNANTWLRR*WLARLF Trigger: AAACAGCCTTGCCAGCCACCACCTCCTGAGCCATGT...ATTTGCATTCTGTTTGAATATACTATGCCCTAATATCACAGTCCCACTTCTCAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062160.4 |
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| CDS-3UTR CCA 90 bp | ATGAGAAGTGGGACTGTGATATTAGGGCATAGTATATTCAAACAGAATGCAAATTCAGGAACAATGGGTTaGCAGGGCTCAGGAGCCTTG | + |
|
Preference number: 4 (lower is better) Translates to: MRSGTVILGHSIFKQNANSGTMG*QGSGAL Trigger: CAAGGCTCCTGAGCCCTGCCAACCCATTGTTCCTGA...ATTTGCATTCTGTTTGAATATACTATGCCCTAATATCACAGTCCCACTTCTCAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062160.4 |
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| CDS-3UTR TCA 90 bp | ATGAGAAGTGGGACTGTGATATTAGGGCATAGTATATTCAAACAGAATGCAAATTATTGGAGTGACAGTTaGGGGACAGGGCTCAGGAAC | + |
|
Preference number: 4 (lower is better) Translates to: MRSGTVILGHSIFKQNANYWSDS*GTGLRN Trigger: GTTCCTGAGCCCTGTCCCTCAACTGTCACTCCAATA...ATTTGCATTCTGTTTGAATATACTATGCCCTAATATCACAGTCCCACTTCTCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062160.4 |
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| CDS-3UTR CCA 90 bp | ATGAGAAGTGGGACTGTGATATTAGGGCATAGTATATTCAAACAGAATGCAAATTCAGGAGGTGGTGGCTaGCAAGGCTGTTTCACTTGT | + |
|
Preference number: 4 (lower is better) Translates to: MRSGTVILGHSIFKQNANSGGGG*QGCFTC Trigger: ACAAGTGAAACAGCCTTGCCAGCCACCACCTCCTGA...ATTTGCATTCTGTTTGAATATACTATGCCCTAATATCACAGTCCCACTTCTCAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062160.4 |
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| CDS-3UTR CCA 90 bp | ATGAGAAGTGGGACTGTGATATTAGGGCATAGTATATTCAAACAGAATGCAAATTGCTTTGTCTTCTGTTaGGCTAGTATTGGAGTGACA | + |
|
Preference number: 4 (lower is better) Translates to: MRSGTVILGHSIFKQNANCFVFC*ASIGVT Trigger: TGTCACTCCAATACTAGCCCAACAGAAGACAAAGCA...ATTTGCATTCTGTTTGAATATACTATGCCCTAATATCACAGTCCCACTTCTCAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062160.4 |
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| CDS CCA 90 bp | CAGGGTGTCTTGACTTGTGAGACACATGGCTCAGGAGGTGGTGGCTaGCAAGGCTGTTTCACTTGTTGCTCATGCAACTGTGGAGGAGCT | + |
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Preference number: 5 (lower is better) Translates to: QGVLTCETHGSGGGG*QGCFTCCSCNCGGA Trigger: AGCTCCTCCACAGTTGCATGAGCAACAAGTGAAACAGCCTTGCCAGCCACCACCTCCTGAGCCATGTGTCTCACAAGTCAAGACACCCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062160.4 |
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| CDS-3UTR CAA 90 bp | ATGAGAAGTGGGACTGTGATATTAGGGCATAGTATATTCAAACAGAATGCAAATCTCAGGAACAATGGGTaGGCAGGGCTCAGGAGCCTT | + |
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Preference number: 5 (lower is better) Translates to: MRSGTVILGHSIFKQNANLRNNG*AGLRSL Trigger: AAGGCTCCTGAGCCCTGCCAACCCATTGTTCCTGAG...ATTTGCATTCTGTTTGAATATACTATGCCCTAATATCACAGTCCCACTTCTCAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062160.4 |
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