Pregenerated sensors for SPRR1A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000050359Ensembl transcript IDs: ENSMUST00000054599.8
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 90 bp | TTAGGTGGTGCAAGGAGAGAGGGATTAAGATTGAAGGTCACAGCATaGGTAGCACAAGGCAATGGGACTCATAAGCAGGATAGACAGCAG | + |
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Preference number: 2 (lower is better) Translates to: LGGARREGLRLKVTA*VAQGNGTHKQDRQQ Trigger: CTGCTGTCTATCCTGCTTATGAGTCCCATTGCCTTGTGCTACCAATGCTGTGACCTTCAATCTTAATCCCTCTCTCCTTGCACCACCTAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054599.8 |
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| 3UTR CCA 72 bp | GCCCTTGAAGATGAGGATGAGAGTCAACTTTTTAGGTaGTGCAAGGAGAGAGGGATTAAGATTGAAGGTCAC | + |
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Preference number: 3 (lower is better) Translates to: ALEDEDESQLFR*CKERGIKIEGH Trigger: GTGACCTTCAATCTTAATCCCTCTCTCCTTGCACCACCTAAAAAGTTGACTCTCATCCTCATCTTCAAGGGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000054599.8 |
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| 3UTR TCA 72 bp | CACTTGTCTCACTCCTCACCCCCTTCAGATGAATCCTaGGCCATGAAAAGTGTAGCCATTCAATATGACTTT | + |
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Preference number: 3 (lower is better) Translates to: HLSHSSPPSDES*AMKSVAIQYDF Trigger: AAAGTCATATTGAATGGCTACACTTTTCATGGCTCAGGATTCATCTGAAGGGGGTGAGGAGTGAGACAAGTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000054599.8 |
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| 3UTR GCA 72 bp | CTTGAAGATGAGGATGAGAGTCAACTTTTTAGGTGGTaGAAGGAGAGAGGGATTAAGATTGAAGGTCACAGC | + |
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Preference number: 3 (lower is better) Translates to: LEDEDESQLFRW*KERGIKIEGHS Trigger: GCTGTGACCTTCAATCTTAATCCCTCTCTCCTTGCACCACCTAAAAAGTTGACTCTCATCCTCATCTTCAAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000054599.8 |
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| CDS-3UTR CCA 90 bp | AGACAGCAGCCTCAGCATCTGGTGATCAGGTCTTCAGGCATGGCTCTGGACAATTCGGGAACAACAGGGTaGCAGGGCTCAGGCGCCTTG | + |
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Preference number: 4 (lower is better) Translates to: RQQPQHLVIRSSGMALDNSGTTG*QGSGAL Trigger: CAAGGCGCCTGAGCCCTGCCACCCTGTTGTTCCCGA...ATTGTCCAGAGCCATGCCTGAAGACCTGATCACCAGATGCTGAGGCTGCTGTCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054599.8 |
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| CDS-3UTR GCA 90 bp | GCATTGGTAGCACAAGGCAATGGGACTCATAAGCAGGATAGACAGCAGCCTCAGCTGGCCCCTTGGGGTTaGAGGGCTCAGGAACAGGGT | + |
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Preference number: 4 (lower is better) Translates to: ALVAQGNGTHKQDRQQPQLAPWG*RAQEQG Trigger: ACCCTGTTCCTGAGCCCTGCAACCCCAAGGGGCCAG...CTGAGGCTGCTGTCTATCCTGCTTATGAGTCCCATTGCCTTGTGCTACCAATGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054599.8 |
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| CDS-3UTR GCA 90 bp | AGACAGCAGCCTCAGCATCTGGTGATCAGGTCTTCAGGCATGGCTCTGGACAATGGTACAGTGCAGGGCTaGTTCTGCTGGTGGGAACTC | + |
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Preference number: 4 (lower is better) Translates to: RQQPQHLVIRSSGMALDNGTVQG*FCWWEL Trigger: GAGTTCCCACCAGCAGAAGCAGCCCTGCACTGTACC...ATTGTCCAGAGCCATGCCTGAAGACCTGATCACCAGATGCTGAGGCTGCTGTCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054599.8 |
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| CDS-3UTR GCA 90 bp | ACAGCATTGGTAGCACAAGGCAATGGGACTCATAAGCAGGATAGACAGCAGCCTCTGGCACCTTGGGGTTaGAGGGCTCAGGTGCCTTGG | + |
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Preference number: 4 (lower is better) Translates to: TALVAQGNGTHKQDRQQPLAPWG*RAQVPW Trigger: CCAAGGCACCTGAGCCCTGCAACCCCAAGGTGCCAG...AGGCTGCTGTCTATCCTGCTTATGAGTCCCATTGCCTTGTGCTACCAATGCTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054599.8 |
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| CDS-3UTR TCA 90 bp | GCATTGGTAGCACAAGGCAATGGGACTCATAAGCAGGATAGACAGCAGCCTCAGGGTATGGTGATGGAGTaGCAGTTGAGGGGCAGGGCT | + |
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Preference number: 4 (lower is better) Translates to: ALVAQGNGTHKQDRQQPQGMVME*QLRGRA Trigger: AGCCCTGCCCCTCAACTGTCACTCCATCACCATACC...CTGAGGCTGCTGTCTATCCTGCTTATGAGTCCCATTGCCTTGTGCTACCAATGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054599.8 |
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| CDS-3UTR CCA 90 bp | ACAGCATTGGTAGCACAAGGCAATGGGACTCATAAGCAGGATAGACAGCAGCCTTCAGGCGCCTTGGGGTaGCAAGGCTCTGGTGCCTTA | + |
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Preference number: 4 (lower is better) Translates to: TALVAQGNGTHKQDRQQPSGALG*QGSGAL Trigger: TAAGGCACCAGAGCCTTGCCACCCCAAGGCGCCTGA...AGGCTGCTGTCTATCCTGCTTATGAGTCCCATTGCCTTGTGCTACCAATGCTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054599.8 |
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| CDS-3UTR CCA 90 bp | ACAGCATTGGTAGCACAAGGCAATGGGACTCATAAGCAGGATAGACAGCAGCCTTCTGGCACCTTAGGCTaGCAGGGCTCTGGCACCTTA | + |
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Preference number: 4 (lower is better) Translates to: TALVAQGNGTHKQDRQQPSGTLG*QGSGTL Trigger: TAAGGTGCCAGAGCCCTGCCAGCCTAAGGTGCCAGA...AGGCTGCTGTCTATCCTGCTTATGAGTCCCATTGCCTTGTGCTACCAATGCTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054599.8 |
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| CDS-3UTR TCA 90 bp | AAGATGAGGATGAGAGTCAACTTTTTAGGTGGTGCAAGGAGAGAGGGATTAAGATGCTGCTGGTGCAGCTaGGGAGGTACAGTGCAGGGC | + |
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Preference number: 4 (lower is better) Translates to: KMRMRVNFLGGARREGLRCCWCS*GGTVQG Trigger: GCCCTGCACTGTACCTCCTCAGCTGCACCAGCAGCA...TCTTAATCCCTCTCTCCTTGCACCACCTAAAAAGTTGACTCTCATCCTCATCTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000054599.8 |
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| CDS-3UTR CCA 90 bp | AAGATGAGGATGAGAGTCAACTTTTTAGGTGGTGCAAGGAGAGAGGGATTAAGATCTGGCACCTTAGGCTaGCAGGGCTCTGGCACCTTG | + |
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Preference number: 4 (lower is better) Translates to: KMRMRVNFLGGARREGLRSGTLG*QGSGTL Trigger: CAAGGTGCCAGAGCCCTGCCAGCCTAAGGTGCCAGA...TCTTAATCCCTCTCTCCTTGCACCACCTAAAAAGTTGACTCTCATCCTCATCTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000054599.8 |
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| CDS-3UTR CCA 90 bp | AAGATGAGGATGAGAGTCAACTTTTTAGGTGGTGCAAGGAGAGAGGGATTAAGATCTGGTGCCTTAGGTTaGCAGGGCTCTGGCACCTTG | + |
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Preference number: 4 (lower is better) Translates to: KMRMRVNFLGGARREGLRSGALG*QGSGTL Trigger: CAAGGTGCCAGAGCCCTGCCAACCTAAGGCACCAGA...TCTTAATCCCTCTCTCCTTGCACCACCTAAAAAGTTGACTCTCATCCTCATCTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000054599.8 |
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| CDS-3UTR CCA 90 bp | AAGATGAGGATGAGAGTCAACTTTTTAGGTGGTGCAAGGAGAGAGGGATTAAGAGGTGGCAGGGATCCTTaGTTTTGGGGGCACAAGGTT | + |
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Preference number: 4 (lower is better) Translates to: KMRMRVNFLGGARREGLRGGRDP*FWGHKV Trigger: AACCTTGTGCCCCCAAAACCAAGGATCCCTGCCACC...TCTTAATCCCTCTCTCCTTGCACCACCTAAAAAGTTGACTCTCATCCTCATCTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000054599.8 |
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| CDS-3UTR GCA 90 bp | AAGATGAGGATGAGAGTCAACTTTTTAGGTGGTGCAAGGAGAGAGGGATTAAGATTCTGCTTTGTCTTCTaGTGGTATGGTGATGGAGTG | + |
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Preference number: 4 (lower is better) Translates to: KMRMRVNFLGGARREGLRFCFVF*WYGDGV Trigger: CACTCCATCACCATACCAGCAGAAGACAAAGCAGAA...TCTTAATCCCTCTCTCCTTGCACCACCTAAAAAGTTGACTCTCATCCTCATCTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000054599.8 |
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| CDS-3UTR CAA 90 bp | AAGATGAGGATGAGAGTCAACTTTTTAGGTGGTGCAAGGAGAGAGGGATTAAGACAGGGATCCTTGGTTTaGGGGGCACAAGGTTCCTGG | + |
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Preference number: 5 (lower is better) Translates to: KMRMRVNFLGGARREGLRQGSLV*GAQGSW Trigger: CCAGGAACCTTGTGCCCCCAAAACCAAGGATCCCTG...TCTTAATCCCTCTCTCCTTGCACCACCTAAAAAGTTGACTCTCATCCTCATCTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000054599.8 |
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