Pregenerated sensors for SPRN (Mus musculus)
Ensembl gene IDs: ENSMUSG00000045733Ensembl transcript IDs: ENSMUST00000059241.8, ENSMUST00000156791.2
Found 80 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GTACAGGCCAAGAGGATCACTGGAAGGGGCTCACAGTCTAGCCATTaGAACCATGGTGGCTGCAGGGGCGGTGCAGAGGGCATGTACCAG | + |
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Preference number: 1 (lower is better) Translates to: VQAKRITGRGSQSSH*NHGGCRGGAEGMYQ Trigger: CTGGTACATGCCCTCTGCACCGCCCCTGCAGCCACCATGGTTTCAATGGCTAGACTGTGAGCCCCTTCCAGTGATCCTCTTGGCCTGTAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059241.8 ENSMUST00000156791.2 |
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| 3UTR GCA 90 bp | GACAGGAGGTCTGCAGCAGAGAAGTCCAGGAATGTCATCTCCCCTTaGACTTCAGGGCCTGTACCTCAGGAGGCCTGCTGCTGTAGCTCA | + |
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Preference number: 1 (lower is better) Translates to: DRRSAAEKSRNVISP*TSGPVPQEACCCSS Trigger: TGAGCTACAGCAGCAGGCCTCCTGAGGTACAGGCCCTGAAGTGCAAGGGGAGATGACATTCCTGGACTTCTCTGCTGCAGACCTCCTGTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059241.8 ENSMUST00000156791.2 |
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| 3UTR CCA 90 bp | TTTAGTGGCAGAATCAGACGGGCCCACCCAAGGATGGCCTCTTCTTaGCGGTCAGCATTGTTCATGTCCTCGTGTCAGGGTGGGCAAGCA | + |
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Preference number: 1 (lower is better) Translates to: FSGRIRRAHPRMASS*RSALFMSSCQGGQA Trigger: TGCTTGCCCACCCTGACACGAGGACATGAACAATGCTGACCGCCAAGAAGAGGCCATCCTTGGGTGGGCCCGTCTGATTCTGCCACTAAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| 3UTR CCA 90 bp | CTGCTGAGGCTGGTTCTTCTGTCTGCTAGCTTTGTTCTGGCACAGTaGGGCTGTAGATCTGCTGCCCCTTCCACTGTTCAGTTTGCCAGC | + |
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Preference number: 1 (lower is better) Translates to: LLRLVLLSASFVLAQ*GCRSAAPSTVQFAS Trigger: GCTGGCAAACTGAACAGTGGAAGGGGCAGCAGATCTACAGCCCCACTGTGCCAGAACAAAGCTAGCAGACAGAAGAACCAGCCTCAGCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| 3UTR GCA 90 bp | TCTGCTTCTTGTGGATGGCTGATAGCAGGGGTAGCCTCCCACTGTTaGCTTTTGCTGTGGCTGCAGTATTATAAGTCTCTTCTGAGATTC | + |
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Preference number: 1 (lower is better) Translates to: SASCGWLIAGVASHC*LLLWLQYYKSLLRF Trigger: GAATCTCAGAAGAGACTTATAATACTGCAGCCACAGCAAAAGGCAACAGTGGGAGGCTACCCCTGCTATCAGCCATCCACAAGAAGCAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| 3UTR CAA 90 bp | ATCAGACGGGCCCACCCAAGGATGGCCTCTTCTTGGCGGTCAGCATaGTTCATGTCCTCGTGTCAGGGTGGGCAAGCAGACAGGCATGCC | + |
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Preference number: 2 (lower is better) Translates to: IRRAHPRMASSWRSA*FMSSCQGGQADRHA Trigger: GGCATGCCTGTCTGCTTGCCCACCCTGACACGAGGACATGAACAATGCTGACCGCCAAGAAGAGGCCATCCTTGGGTGGGCCCGTCTGAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| 3UTR-3UTR CCA 90 bp | CACGGACAGGAGGTCTGCAGCAGAGAAGTCCAGGAATGTCATCTCCCCTTGCACGATAGGAAGTGCTGTTaGGCCAGGGGGCTATCCCTG | + |
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Preference number: 2 (lower is better) Translates to: HGQEVCSREVQECHLPLHDRKCC*ARGLSL Trigger: CAGGGATAGCCCCCTGGCCCAACAGCACTTCCTATC...GTGCAAGGGGAGATGACATTCCTGGACTTCTCTGCTGCAGACCTCCTGTCCGTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| 3UTR CAA 90 bp | ACTTCAGGGCCTGTACCTCAGGAGGCCTGCTGCTGTAGCTCAACTTaGTACAGGCCAAGAGGATCACTGGAAGGGGCTCACAGTCTAGCC | + |
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Preference number: 2 (lower is better) Translates to: TSGPVPQEACCCSST*YRPRGSLEGAHSLA Trigger: GGCTAGACTGTGAGCCCCTTCCAGTGATCCTCTTGGCCTGTACAAAGTTGAGCTACAGCAGCAGGCCTCCTGAGGTACAGGCCCTGAAGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059241.8 ENSMUST00000156791.2 |
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| 3UTR CAA 90 bp | CTGGTGGTTCTCCCTATACCAGACTTGACGCATCAGCACCTGCCTTaGAGGACCTTAGTGGGCTTGGCCCTTAGCTTGCTGGTCTTGGTG | + |
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Preference number: 2 (lower is better) Translates to: LVVLPIPDLTHQHLP*RTLVGLALSLLVLV Trigger: CACCAAGACCAGCAAGCTAAGGGCCAAGCCCACTAAGGTCCTCAAAGGCAGGTGCTGATGCGTCAAGTCTGGTATAGGGAGAACCACCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| 3UTR-3UTR TCA 90 bp | AATGTCATCTCCCCTTGCACTTCAGGGCCTGTACCTCAGGAGGCCTGCTGCTGTTCACAGTCTAGCCATTaGAACCATGGTGGCTGCAGG | + |
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Preference number: 2 (lower is better) Translates to: NVISPCTSGPVPQEACCCSQSSH*NHGGCR Trigger: CCTGCAGCCACCATGGTTTCAATGGCTAGACTGTGA...ACAGCAGCAGGCCTCCTGAGGTACAGGCCCTGAAGTGCAAGGGGAGATGACATT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059241.8 ENSMUST00000156791.2 |
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| 3UTR-3UTR CCA 90 bp | CAGACACGGACAGGAGGTCTGCAGCAGAGAAGTCCAGGAATGTCATCTCCCCTTTTGCAAGAGGCCTTGTaGGCCCAGAATGGCCAGACT | + |
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Preference number: 2 (lower is better) Translates to: QTRTGGLQQRSPGMSSPLLQEAL*AQNGQT Trigger: AGTCTGGCCATTCTGGGCCCACAAGGCCTCTTGCAA...AAGGGGAGATGACATTCCTGGACTTCTCTGCTGCAGACCTCCTGTCCGTGTCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| 3UTR-3UTR CCA 90 bp | CACGCTCACAACCTGCTGAGGCTGGTTCTTCTGTCTGCTAGCTTTGTTCTGGCAGTCCCTCTGGTTCCATaGGAGGCTCAAGGTCTTTGG | + |
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Preference number: 2 (lower is better) Translates to: HAHNLLRLVLLSASFVLAVPLVP*EAQGLW Trigger: CCAAAGACCTTGAGCCTCCCATGGAACCAGAGGGAC...TGCCAGAACAAAGCTAGCAGACAGAAGAACCAGCCTCAGCAGGTTGTGAGCGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| 3UTR CAA 90 bp | GGGATGGGCAAGAGAGTAAACTACATCCACAAATTGCAAGAGGCCTaGTGGGCCCAGAATGGCCAGACTCTTCTCTGGGCTGGGGAATCA | + |
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Preference number: 2 (lower is better) Translates to: GMGKRVNYIHKLQEA*WAQNGQTLLWAGES Trigger: TGATTCCCCAGCCCAGAGAAGAGTCTGGCCATTCTGGGCCCACAAGGCCTCTTGCAATTTGTGGATGTAGTTTACTCTCTTGCCCATCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| 3UTR CAA 90 bp | CCAGACTTGACGCATCAGCACCTGCCTTTGAGGACCTTAGTGGGCTaGGCCCTTAGCTTGCTGGTCTTGGTGGTTTTGAGCTTGGTCTAT | + |
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Preference number: 2 (lower is better) Translates to: PDLTHQHLPLRTLVG*ALSLLVLVVLSLVY Trigger: ATAGACCAAGCTCAAAACCACCAAGACCAGCAAGCTAAGGGCCAAGCCCACTAAGGTCCTCAAAGGCAGGTGCTGATGCGTCAAGTCTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| 3UTR CAA 90 bp | GACTGGGAAACTGGGATGGGCAAGAGAGTAAACTACATCCACAAATaGCAAGAGGCCTTGTGGGCCCAGAATGGCCAGACTCTTCTCTGG | + |
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Preference number: 2 (lower is better) Translates to: DWETGMGKRVNYIHK*QEALWAQNGQTLLW Trigger: CCAGAGAAGAGTCTGGCCATTCTGGGCCCACAAGGCCTCTTGCAATTTGTGGATGTAGTTTACTCTCTTGCCCATCCCAGTTTCCCAGTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| 3UTR CAA 90 bp | ACTGTGCCTGTGAGCACCGGCAGTGAGAATAGAAGTTGCAGGGAGTaGTATCCTGCAACCTGTTGGTCAAGAAAATGCTTGGCTAGGGCC | + |
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Preference number: 2 (lower is better) Translates to: TVPVSTGSENRSCRE*YPATCWSRKCLARA Trigger: GGCCCTAGCCAAGCATTTTCTTGACCAACAGGTTGCAGGATACAACTCCCTGCAACTTCTATTCTCACTGCCGGTGCTCACAGGCACAGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| 3UTR-3UTR CCA 90 bp | CACGGACAGGAGGTCTGCAGCAGAGAAGTCCAGGAATGTCATCTCCCCTTGCACGACTCTTCTCTGGGCTaGGGAATCATAGTTAGCAAA | + |
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Preference number: 2 (lower is better) Translates to: HGQEVCSREVQECHLPLHDSSLG*GIIVSK Trigger: TTTGCTAACTATGATTCCCCAGCCCAGAGAAGAGTC...GTGCAAGGGGAGATGACATTCCTGGACTTCTCTGCTGCAGACCTCCTGTCCGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| 3UTR-3UTR CCA 90 bp | AATGTCATCTCCCCTTGCACTTCAGGGCCTGTACCTCAGGAGGCCTGCTGCTGTGTATTTAAAGATGTGTaGCTGTGCCAGATGCTAAAC | + |
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Preference number: 2 (lower is better) Translates to: NVISPCTSGPVPQEACCCVFKDV*LCQMLN Trigger: GTTTAGCATCTGGCACAGCCACACATCTTTAAATAC...ACAGCAGCAGGCCTCCTGAGGTACAGGCCCTGAAGTGCAAGGGGAGATGACATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| 3UTR-3UTR TCA 90 bp | GATGTGCTAGTGGGTCCCTGGAACAGCAAGAAGCCAGTCTGCTTAAAGGTAGATGCTCTGGATGTTTTCTaGGCTATGACATCATTGGGA | + |
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Preference number: 2 (lower is better) Translates to: DVLVGPWNSKKPVCLKVDALDVF*AMTSLG Trigger: TCCCAATGATGTCATAGCTCAGAAAACATCCAGAGC...ATCTACCTTTAAGCAGACTGGCTTCTTGCTGTTCCAGGGACCCACTAGCACATC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| 3UTR-3UTR TCA 90 bp | GCAGTGAGAATAGAAGTTGCAGGGAGTTGTATCCTGCAACCTGTTGGTCAAGAAATGTTTTCTGAGCTATaGCATCATTGGGACCTGCTC | + |
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Preference number: 2 (lower is better) Translates to: AVRIEVAGSCILQPVGQEMFSEL*HHWDLL Trigger: GAGCAGGTCCCAATGATGTCATAGCTCAGAAAACAT...TTCTTGACCAACAGGTTGCAGGATACAACTCCCTGCAACTTCTATTCTCACTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| 3UTR GCA 72 bp | TCCTCGTGTCAGGGTGGGCAAGCAGACAGGCATGCCTaGTTGGGCAGTTCTGGAGAGTCAAGGGCAGCCTGC | + |
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Preference number: 3 (lower is better) Translates to: SSCQGGQADRHA*LGSSGESRAAC Trigger: GCAGGCTGCCCTTGACTCTCCAGAACTGCCCAAGCAGGCATGCCTGTCTGCTTGCCCACCCTGACACGAGGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| 3UTR CCA 72 bp | CGTGTCAGGGTGGGCAAGCAGACAGGCATGCCTGCTTaGGCAGTTCTGGAGAGTCAAGGGCAGCCTGCCTCT | + |
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Preference number: 3 (lower is better) Translates to: RVRVGKQTGMPA*AVLESQGQPAS Trigger: AGAGGCAGGCTGCCCTTGACTCTCCAGAACTGCCCAAGCAGGCATGCCTGTCTGCTTGCCCACCCTGACACG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| 3UTR GCA 72 bp | CATGTCCTCGTGTCAGGGTGGGCAAGCAGACAGGCATaGCTGCTTGGGCAGTTCTGGAGAGTCAAGGGCAGC | + |
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Preference number: 3 (lower is better) Translates to: HVLVSGWASRQA*LLGQFWRVKGS Trigger: GCTGCCCTTGACTCTCCAGAACTGCCCAAGCAGGCATGCCTGTCTGCTTGCCCACCCTGACACGAGGACATG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| 3UTR GCA 72 bp | TCTGCAGCAGAGAAGTCCAGGAATGTCATCTCCCCTTaGACTTCAGGGCCTGTACCTCAGGAGGCCTGCTGC | + |
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Preference number: 3 (lower is better) Translates to: SAAEKSRNVISP*TSGPVPQEACC Trigger: GCAGCAGGCCTCCTGAGGTACAGGCCCTGAAGTGCAAGGGGAGATGACATTCCTGGACTTCTCTGCTGCAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059241.8 ENSMUST00000156791.2 |
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| 3UTR CCA 72 bp | AGAATCAGACGGGCCCACCCAAGGATGGCCTCTTCTTaGCGGTCAGCATTGTTCATGTCCTCGTGTCAGGGT | + |
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Preference number: 3 (lower is better) Translates to: RIRRAHPRMASS*RSALFMSSCQG Trigger: ACCCTGACACGAGGACATGAACAATGCTGACCGCCAAGAAGAGGCCATCCTTGGGTGGGCCCGTCTGATTCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| 3UTR GCA 72 bp | CCTTGCACTTCAGGGCCTGTACCTCAGGAGGCCTGCTaGTGTAGCTCAACTTTGTACAGGCCAAGAGGATCA | + |
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Preference number: 3 (lower is better) Translates to: PCTSGPVPQEAC*CSSTLYRPRGS Trigger: TGATCCTCTTGGCCTGTACAAAGTTGAGCTACAGCAGCAGGCCTCCTGAGGTACAGGCCCTGAAGTGCAAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059241.8 ENSMUST00000156791.2 |
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| 3UTR CCA 72 bp | CTGGTTCTTCTGTCTGCTAGCTTTGTTCTGGCACAGTaGGGCTGTAGATCTGCTGCCCCTTCCACTGTTCAG | + |
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Preference number: 3 (lower is better) Translates to: LVLLSASFVLAQ*GCRSAAPSTVQ Trigger: CTGAACAGTGGAAGGGGCAGCAGATCTACAGCCCCACTGTGCCAGAACAAAGCTAGCAGACAGAAGAACCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| 3UTR-3UTR CAA 90 bp | CACGGACAGGAGGTCTGCAGCAGAGAAGTCCAGGAATGTCATCTCCCCTTGCACTGCTGTAGCTCAACTTaGTACAGGCCAAGAGGATCA | + |
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Preference number: 3 (lower is better) Translates to: HGQEVCSREVQECHLPLHCCSST*YRPRGS Trigger: TGATCCTCTTGGCCTGTACAAAGTTGAGCTACAGCA...GTGCAAGGGGAGATGACATTCCTGGACTTCTCTGCTGCAGACCTCCTGTCCGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059241.8 ENSMUST00000156791.2 |
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| 3UTR CCA 72 bp | CATCCACAAATTGCAAGAGGCCTTGTGGGCCCAGAATaGCCAGACTCTTCTCTGGGCTGGGGAATCATAGTT | + |
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Preference number: 3 (lower is better) Translates to: HPQIARGLVGPE*PDSSLGWGIIV Trigger: AACTATGATTCCCCAGCCCAGAGAAGAGTCTGGCCATTCTGGGCCCACAAGGCCTCTTGCAATTTGTGGATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| 3UTR CCA 72 bp | AGAGTAAACTACATCCACAAATTGCAAGAGGCCTTGTaGGCCCAGAATGGCCAGACTCTTCTCTGGGCTGGG | + |
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Preference number: 3 (lower is better) Translates to: RVNYIHKLQEAL*AQNGQTLLWAG Trigger: CCCAGCCCAGAGAAGAGTCTGGCCATTCTGGGCCCACAAGGCCTCTTGCAATTTGTGGATGTAGTTTACTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| 3UTR CCA 72 bp | GGTACACAAAGGTCTGGTCCACATAGTCCATCCTCATaGGTGTTGGACAAGTTGAAGGGGCTCTGGTGGTTC | + |
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Preference number: 3 (lower is better) Translates to: GTQRSGPHSPSS*VLDKLKGLWWF Trigger: GAACCACCAGAGCCCCTTCAACTTGTCCAACACCCATGAGGATGGACTATGTGGACCAGACCTTTGTGTACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| 3UTR CCA 72 bp | ACTTGGATGCTCAATAGGCTCTCTGCTTCTTGTGGATaGCTGATAGCAGGGGTAGCCTCCCACTGTTGCCTT | + |
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Preference number: 3 (lower is better) Translates to: TWMLNRLSASCG*LIAGVASHCCL Trigger: AAGGCAACAGTGGGAGGCTACCCCTGCTATCAGCCATCCACAAGAAGCAGAGAGCCTATTGAGCATCCAAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| 3UTR TCA 72 bp | TGGGCTTGGCCCTTAGCTTGCTGGTCTTGGTGGTTTTaGGCTTGGTCTATTAGAGACATAGGAGCATCTGGG | + |
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Preference number: 3 (lower is better) Translates to: WAWPLACWSWWF*AWSIRDIGASG Trigger: CCCAGATGCTCCTATGTCTCTAATAGACCAAGCTCAAAACCACCAAGACCAGCAAGCTAAGGGCCAAGCCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| 3UTR GCA 72 bp | ACTGTGCCTGTGAGCACCGGCAGTGAGAATAGAAGTTaGAGGGAGTTGTATCCTGCAACCTGTTGGTCAAGA | + |
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Preference number: 3 (lower is better) Translates to: TVPVSTGSENRS*RELYPATCWSR Trigger: TCTTGACCAACAGGTTGCAGGATACAACTCCCTGCAACTTCTATTCTCACTGCCGGTGCTCACAGGCACAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| 3UTR CCA 72 bp | CTTGTGGGCCCAGAATGGCCAGACTCTTCTCTGGGCTaGGGAATCATAGTTAGCAAAATGAAGTTACCCCCT | + |
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Preference number: 3 (lower is better) Translates to: LVGPEWPDSSLG*GIIVSKMKLPP Trigger: AGGGGGTAACTTCATTTTGCTAACTATGATTCCCCAGCCCAGAGAAGAGTCTGGCCATTCTGGGCCCACAAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| 3UTR GCA 72 bp | TGTGGATGGCTGATAGCAGGGGTAGCCTCCCACTGTTaGCTTTTGCTGTGGCTGCAGTATTATAAGTCTCTT | + |
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Preference number: 3 (lower is better) Translates to: CGWLIAGVASHC*LLLWLQYYKSL Trigger: AAGAGACTTATAATACTGCAGCCACAGCAAAAGGCAACAGTGGGAGGCTACCCCTGCTATCAGCCATCCACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| 3UTR-3UTR CAA 90 bp | GGAAAAGCCTGTTACCAGCAGAGGGCTTTATTTCACAAGGAACTCTTCACTGATCTTCCACTGTTCAGTTaGCCAGCTGTCAGCTGTGCC | + |
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Preference number: 3 (lower is better) Translates to: GKACYQQRALFHKELFTDLPLFS*PAVSCA Trigger: GGCACAGCTGACAGCTGGCAAACTGAACAGTGGAAG...ATCAGTGAAGAGTTCCTTGTGAAATAAAGCCCTCTGCTGGTAACAGGCTTTTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| 3UTR TCA 72 bp | TCCTGGGATGGTTATTTTACTGCTCTGGATGTTTTCTaGGCTATGACATCATTGGGACCTGCTCTGGGCAGG | + |
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Preference number: 3 (lower is better) Translates to: SWDGYFTALDVF*AMTSLGPALGR Trigger: CCTGCCCAGAGCAGGTCCCAATGATGTCATAGCTCAGAAAACATCCAGAGCAGTAAAATAACCATCCCAGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| 3UTR GCA 72 bp | TCATGTGGCTTGGGCTGGTCTCAAACACATTCCTTCTaGCTTAGCCTCTTGAGTGCTGGAATTATACAGGTG | + |
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Preference number: 3 (lower is better) Translates to: SCGLGWSQTHSF*LSLLSAGIIQV Trigger: CACCTGTATAATTCCAGCACTCAAGAGGCTAAGGCAGAAGGAATGTGTTTGAGACCAGCCCAAGCCACATGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| 3UTR CCA 72 bp | GCATGTTGTAGGAGGAGCATGGTGGGCGTCCTGGGATaGTTATTTTACTGCTCTGGATGTTTTCTGAGCTAT | + |
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Preference number: 3 (lower is better) Translates to: ACCRRSMVGVLG*LFYCSGCFLSY Trigger: ATAGCTCAGAAAACATCCAGAGCAGTAAAATAACCATCCCAGGACGCCCACCATGCTCCTCCTACAACATGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| 3UTR CCA 72 bp | AACACTCCATGTGGCAAAGATGTGCTAGTGGGTCCCTaGAACAGCAAGAAGCCAGTCTGCTTAAAGGTAGAT | + |
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Preference number: 3 (lower is better) Translates to: NTPCGKDVLVGP*NSKKPVCLKVD Trigger: ATCTACCTTTAAGCAGACTGGCTTCTTGCTGTTCCAGGGACCCACTAGCACATCTTTGCCACATGGAGTGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| 3UTR GCA 72 bp | CTGCTAGTGGAGAAGGTATTTAAAGATGTGTGGCTGTaGCAGATGCTAAACACGCTGGAGAAGTCAGATTGG | + |
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Preference number: 3 (lower is better) Translates to: LLVEKVFKDVWL*QMLNTLEKSDW Trigger: CCAATCTGACTTCTCCAGCGTGTTTAGCATCTGGCACAGCCACACATCTTTAAATACCTTCTCCACTAGCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| 3UTR CCA 72 bp | TCAGCACATCAGCTCTGTTCTCAGGATGTATATGGATaGTCAGAGAGAGCTAGTAGCATTAACCCACGCTCA | + |
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Preference number: 3 (lower is better) Translates to: SAHQLCSQDVYG*SERASSINPRS Trigger: TGAGCGTGGGTTAATGCTACTAGCTCTCTCTGACCATCCATATACATCCTGAGAACAGAGCTGATGTGCTGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| 3UTR CCA 72 bp | AATAGAAGTTGCAGGGAGTTGTATCCTGCAACCTGTTaGTCAAGAAAATGCTTGGCTAGGGCCCTGCCAATA | + |
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Preference number: 3 (lower is better) Translates to: NRSCRELYPATC*SRKCLARALPI Trigger: TATTGGCAGGGCCCTAGCCAAGCATTTTCTTGACCAACAGGTTGCAGGATACAACTCCCTGCAACTTCTATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| 3UTR TCA 72 bp | ACTAGCCAGAGGTATGCTGAGCTAGCATATATTGACTaGATCCCAAGACCCAACACTCCATGTGGCAAAGAT | + |
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Preference number: 3 (lower is better) Translates to: TSQRYAELAYID*IPRPNTPCGKD Trigger: ATCTTTGCCACATGGAGTGTTGGGTCTTGGGATTCAGTCAATATATGCTAGCTCAGCATACCTCTGGCTAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| 3UTR GCA 72 bp | GTGCTAGTGGGTCCCTGGAACAGCAAGAAGCCAGTCTaGTTAAAGGTAGATTCTTGTGAGGATTATAGAGTA | + |
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Preference number: 3 (lower is better) Translates to: VLVGPWNSKKPV*LKVDSCEDYRV Trigger: TACTCTATAATCCTCACAAGAATCTACCTTTAAGCAGACTGGCTTCTTGCTGTTCCAGGGACCCACTAGCAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| 3UTR CCA 72 bp | GCTGCTATCTACTGGAACTATGGGAATCTTGCAGTTTaGGTTATATACAAAGAAGGCCCCAGCAGGATTGGT | + |
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Preference number: 3 (lower is better) Translates to: AAIYWNYGNLAV*VIYKEGPSRIG Trigger: ACCAATCCTGCTGGGGCCTTCTTTGTATATAACCCAAACTGCAAGATTCCCATAGTTCCAGTAGATAGCAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| 3UTR CCA 72 bp | AGTTTGGGTTATATACAAAGAAGGCCCCAGCAGGATTaGTATTATATCCAAGTGACCCTCACTCATGACCCT | + |
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Preference number: 3 (lower is better) Translates to: SLGYIQRRPQQD*YYIQVTLTHDP Trigger: AGGGTCATGAGTGAGGGTCACTTGGATATAATACCAATCCTGCTGGGGCCTTCTTTGTATATAACCCAAACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| 3UTR CCA 72 bp | TGTGTTCATAATGCCACAATACCCAGAACTAACACATaGTACTCTGTGGTACACAAAGGTCTGGTCCACATA | + |
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Preference number: 3 (lower is better) Translates to: CVHNATIPRTNT*YSVVHKGLVHI Trigger: TATGTGGACCAGACCTTTGTGTACCACAGAGTACCATGTGTTAGTTCTGGGTATTGTGGCATTATGAACACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| 3UTR CCA 72 bp | TTTTGTCATTTTCAGACAAAGTTTCATCATGTGGCTTaGGCTGGTCTCAAACACATTCCTTCTGCCTTAGCC | + |
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Preference number: 3 (lower is better) Translates to: FCHFQTKFHHVA*AGLKHIPSALA Trigger: GGCTAAGGCAGAAGGAATGTGTTTGAGACCAGCCCAAGCCACATGATGAAACTTTGTCTGAAAATGACAAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| 3UTR GCA 72 bp | ATAAAATGCTGCTATCTACTGGAACTATGGGAATCTTaGAGTTTGGGTTATATACAAAGAAGGCCCCAGCAG | + |
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Preference number: 3 (lower is better) Translates to: IKCCYLLELWES*SLGYIQRRPQQ Trigger: CTGCTGGGGCCTTCTTTGTATATAACCCAAACTGCAAGATTCCCATAGTTCCAGTAGATAGCAGCATTTTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| CDS-3UTR GCA 90 bp | TTACCCCCTGGGCAGGAGGCCATTAGGGTGGGCCCTAGGGGCCTTAAGACAGGCCGCAGCCACACCCGCTaGAGCCCCTGCTGCTGCCCC | + |
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Preference number: 4 (lower is better) Translates to: LPPGQEAIRVGPRGLKTGRSHTR*SPCCCP Trigger: GGGGCAGCAGCAGGGGCTGCAGCGGGTGTGGCTGCG...GCCTGTCTTAAGGCCCCTAGGGCCCACCCTAATGGCCTCCTGCCCAGGGGGTAA 69% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| CDS-3UTR GCA 90 bp | GGATCACTGGAAGGGGCTCACAGTCTAGCCATTGAAACCATGGTGGCTGCAGGGTGCAGCCCCTGCTGCTaGCCCTGCAGCCGCCACGCG | + |
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Preference number: 4 (lower is better) Translates to: GSLEGAHSLAIETMVAAGCSPCC*PCSRHA Trigger: CGCGTGGCGGCTGCAGGGGCAGCAGCAGGGGCTGCA...CCCTGCAGCCACCATGGTTTCAATGGCTAGACTGTGAGCCCCTTCCAGTGATCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059241.8 ENSMUST00000156791.2 |
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| CDS-3UTR GCA 90 bp | GGAGGTCTGCAGCAGAGAAGTCCAGGAATGTCATCTCCCCTTGCACTTCAGGGCTGCAGCCCCTGCTGCTaGCCCTGCAGCCGCCACGCG | + |
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Preference number: 4 (lower is better) Translates to: GGLQQRSPGMSSPLALQGCSPCC*PCSRHA Trigger: CGCGTGGCGGCTGCAGGGGCAGCAGCAGGGGCTGCA...GCCCTGAAGTGCAAGGGGAGATGACATTCCTGGACTTCTCTGCTGCAGACCTCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059241.8 ENSMUST00000156791.2 |
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| CDS-3UTR GCA 90 bp | CACGGACAGGAGGTCTGCAGCAGAGAAGTCCAGGAATGTCATCTCCCCTTGCACCGCAGCCACACCCGCTaGAGCCCCTGCTGCTGCCCC | + |
|
Preference number: 4 (lower is better) Translates to: HGQEVCSREVQECHLPLHRSHTR*SPCCCP Trigger: GGGGCAGCAGCAGGGGCTGCAGCGGGTGTGGCTGCG...GTGCAAGGGGAGATGACATTCCTGGACTTCTCTGCTGCAGACCTCCTGTCCGTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059241.8 ENSMUST00000156791.2 |
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| CDS-3UTR GCA 90 bp | GGGCCTGTACCTCAGGAGGCCTGCTGCTGTAGCTCAACTTTGTACAGGCCAAGACCCTGCTGCTGCCCCTaGAGCCGCCACGCGCAGAGA | + |
|
Preference number: 4 (lower is better) Translates to: GPVPQEACCCSSTLYRPRPCCCP*SRHAQR Trigger: TCTCTGCGCGTGGCGGCTGCAGGGGCAGCAGCAGGG...TCTTGGCCTGTACAAAGTTGAGCTACAGCAGCAGGCCTCCTGAGGTACAGGCCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059241.8 ENSMUST00000156791.2 |
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| 3UTR CAA 72 bp | TCGTGTCAGGGTGGGCAAGCAGACAGGCATGCCTGCTaGGGCAGTTCTGGAGAGTCAAGGGCAGCCTGCCTC | + |
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Preference number: 4 (lower is better) Translates to: SCQGGQADRHAC*GSSGESRAACL Trigger: GAGGCAGGCTGCCCTTGACTCTCCAGAACTGCCCAAGCAGGCATGCCTGTCTGCTTGCCCACCCTGACACGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| CDS-3UTR CCA 90 bp | GGGCCTGTACCTCAGGAGGCCTGCTGCTGTAGCTCAACTTTGTACAGGCCAAGACTCCGCGGCCGCCCTTaGCGGAACAGCTGTCACAGA | + |
|
Preference number: 4 (lower is better) Translates to: GPVPQEACCCSSTLYRPRLRGRP*RNSCHR Trigger: TCTGTGACAGCTGTTCCGCCAAGGGCGGCCGCGGAG...TCTTGGCCTGTACAAAGTTGAGCTACAGCAGCAGGCCTCCTGAGGTACAGGCCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| CDS-3UTR GCA 90 bp | AGATGTGCTAGTGGGTCCCTGGAACAGCAAGAAGCCAGTCTGCTTAAAGGTAGAACCCGCTGCAGCCCCTaGTGCTGCCCCTGCAGCCGC | + |
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Preference number: 4 (lower is better) Translates to: RCASGSLEQQEASLLKGRTRCSP*CCPCSR Trigger: GCGGCTGCAGGGGCAGCAGCAGGGGCTGCAGCGGGT...TCTACCTTTAAGCAGACTGGCTTCTTGCTGTTCCAGGGACCCACTAGCACATCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| 3UTR CAA 72 bp | CAGAATCAGACGGGCCCACCCAAGGATGGCCTCTTCTaGGCGGTCAGCATTGTTCATGTCCTCGTGTCAGGG | + |
|
Preference number: 4 (lower is better) Translates to: QNQTGPPKDGLF*AVSIVHVLVSG Trigger: CCCTGACACGAGGACATGAACAATGCTGACCGCCAAGAAGAGGCCATCCTTGGGTGGGCCCGTCTGATTCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| 3UTR CAA 72 bp | GTCTGCAGCAGAGAAGTCCAGGAATGTCATCTCCCCTaGCACTTCAGGGCCTGTACCTCAGGAGGCCTGCTG | + |
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Preference number: 4 (lower is better) Translates to: VCSREVQECHLP*HFRACTSGGLL Trigger: CAGCAGGCCTCCTGAGGTACAGGCCCTGAAGTGCAAGGGGAGATGACATTCCTGGACTTCTCTGCTGCAGAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059241.8 ENSMUST00000156791.2 |
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| CDS-3UTR GCA 90 bp | GCAGCAGAGAAGTCCAGGAATGTCATCTCCCCTTGCACTTCAGGGCCTGTACCTTCCGTTGCCTCCCATTaGCCCATTCTCATCGTCCTC | + |
|
Preference number: 4 (lower is better) Translates to: AAEKSRNVISPCTSGPVPSVASH*PILIVL Trigger: GAGGACGATGAGAATGGGGCAATGGGAGGCAACGGA...AGGTACAGGCCCTGAAGTGCAAGGGGAGATGACATTCCTGGACTTCTCTGCTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059241.8 ENSMUST00000156791.2 |
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| 3UTR CAA 72 bp | ACGCATCAGCACCTGCCTTTGAGGACCTTAGTGGGCTaGGCCCTTAGCTTGCTGGTCTTGGTGGTTTTGAGC | + |
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Preference number: 4 (lower is better) Translates to: THQHLPLRTLVG*ALSLLVLVVLS Trigger: GCTCAAAACCACCAAGACCAGCAAGCTAAGGGCCAAGCCCACTAAGGTCCTCAAAGGCAGGTGCTGATGCGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| 3UTR CAA 72 bp | CTCCCTATACCAGACTTGACGCATCAGCACCTGCCTTaGAGGACCTTAGTGGGCTTGGCCCTTAGCTTGCTG | + |
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Preference number: 4 (lower is better) Translates to: LPIPDLTHQHLP*RTLVGLALSLL Trigger: CAGCAAGCTAAGGGCCAAGCCCACTAAGGTCCTCAAAGGCAGGTGCTGATGCGTCAAGTCTGGTATAGGGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| CDS-3UTR GCA 90 bp | CCCTCACTCATGACCCTTAAGCTCAAGCAGAATGGAATGTTTTTGAAAGTGTATCCCTGCTGCTGCCCCTaGAGCCGCCACGCGCAGAGA | + |
|
Preference number: 4 (lower is better) Translates to: PSLMTLKLKQNGMFLKVYPCCCP*SRHAQR Trigger: TCTCTGCGCGTGGCGGCTGCAGGGGCAGCAGCAGGG...ATACACTTTCAAAAACATTCCATTCTGCTTGAGCTTAAGGGTCATGAGTGAGGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| CDS-3UTR GCA 90 bp | TCCATCCTCATGGGTGTTGGACAAGTTGAAGGGGCTCTGGTGGTTCTCCCTATATCCGTTGCCTCCCATTaGCCCATTCTCATCGTCCTC | + |
|
Preference number: 4 (lower is better) Translates to: SILMGVGQVEGALVVLPISVASH*PILIVL Trigger: GAGGACGATGAGAATGGGGCAATGGGAGGCAACGGA...TATAGGGAGAACCACCAGAGCCCCTTCAACTTGTCCAACACCCATGAGGATGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| 3UTR CAA 72 bp | GGTCCACATAGTCCATCCTCATGGGTGTTGGACAAGTaGAAGGGGCTCTGGTGGTTCTCCCTATACCAGACT | + |
|
Preference number: 4 (lower is better) Translates to: GPHSPSSWVLDK*KGLWWFSLYQT Trigger: AGTCTGGTATAGGGAGAACCACCAGAGCCCCTTCAACTTGTCCAACACCCATGAGGATGGACTATGTGGACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| 3UTR CAA 72 bp | ACTGGGATGGGCAAGAGAGTAAACTACATCCACAAATaGCAAGAGGCCTTGTGGGCCCAGAATGGCCAGACT | + |
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Preference number: 4 (lower is better) Translates to: TGMGKRVNYIHK*QEALWAQNGQT Trigger: AGTCTGGCCATTCTGGGCCCACAAGGCCTCTTGCAATTTGTGGATGTAGTTTACTCTCTTGCCCATCCCAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| 3UTR CAA 72 bp | AAGAGAGTAAACTACATCCACAAATTGCAAGAGGCCTaGTGGGCCCAGAATGGCCAGACTCTTCTCTGGGCT | + |
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Preference number: 4 (lower is better) Translates to: KRVNYIHKLQEA*WAQNGQTLLWA Trigger: AGCCCAGAGAAGAGTCTGGCCATTCTGGGCCCACAAGGCCTCTTGCAATTTGTGGATGTAGTTTACTCTCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| 3UTR CAA 72 bp | TGGCTGATAGCAGGGGTAGCCTCCCACTGTTGCCTTTaGCTGTGGCTGCAGTATTATAAGTCTCTTCTGAGA | + |
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Preference number: 4 (lower is better) Translates to: WLIAGVASHCCL*LWLQYYKSLLR Trigger: TCTCAGAAGAGACTTATAATACTGCAGCCACAGCAAAAGGCAACAGTGGGAGGCTACCCCTGCTATCAGCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| 3UTR CAA 72 bp | GGCTGGTCTCAAACACATTCCTTCTGCCTTAGCCTCTaGAGTGCTGGAATTATACAGGTGTGTGCCATGACA | + |
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Preference number: 4 (lower is better) Translates to: GWSQTHSFCLSL*SAGIIQVCAMT Trigger: TGTCATGGCACACACCTGTATAATTCCAGCACTCAAGAGGCTAAGGCAGAAGGAATGTGTTTGAGACCAGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| 3UTR CAA 72 bp | TTTTTGTCATTTTCAGACAAAGTTTCATCATGTGGCTaGGGCTGGTCTCAAACACATTCCTTCTGCCTTAGC | + |
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Preference number: 4 (lower is better) Translates to: FLSFSDKVSSCG*GWSQTHSFCLS Trigger: GCTAAGGCAGAAGGAATGTGTTTGAGACCAGCCCAAGCCACATGATGAAACTTTGTCTGAAAATGACAAAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| CDS TCA 90 bp | GGTGCCGCCCAGAAGCAGACAAATACGTGGGCTGTGCACGGACCCTaGGCCGGAAGTCCAGGCCCAGTAGCTGTAGACTCCTCGGTCGGT | + |
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Preference number: 5 (lower is better) Translates to: GAAQKQTNTWAVHGP*AGSPGPVAVDSSVG Trigger: ACCGACCGAGGAGTCTACAGCTACTGGGCCTGGACTTCCGGCTCAGGGTCCGTGCACAGCCCACGTATTTGTCTGCTTCTGGGCGGCACC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| CDS-3UTR CAA 90 bp | GGATCACTGGAAGGGGCTCACAGTCTAGCCATTGAAACCATGGTGGCTGCAGGGCCTCCGCGGCCGCCCTaGGCGGAACAGCTGTCACAG | + |
|
Preference number: 5 (lower is better) Translates to: GSLEGAHSLAIETMVAAGPPRPP*AEQLSQ Trigger: CTGTGACAGCTGTTCCGCCAAGGGCGGCCGCGGAGG...CCCTGCAGCCACCATGGTTTCAATGGCTAGACTGTGAGCCCCTTCCAGTGATCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| CDS-3UTR CAA 90 bp | CGGACAGGAGGTCTGCAGCAGAGAAGTCCAGGAATGTCATCTCCCCTTGCACTTTTCCGTTGCCTCCCATaGCCCCATTCTCATCGTCCT | + |
|
Preference number: 5 (lower is better) Translates to: RTGGLQQRSPGMSSPLALFRCLP*PHSHRP Trigger: AGGACGATGAGAATGGGGCAATGGGAGGCAACGGAA...AAGTGCAAGGGGAGATGACATTCCTGGACTTCTCTGCTGCAGACCTCCTGTCCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000059241.8 ENSMUST00000156791.2 |
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| CDS-3UTR CAA 90 bp | GAGAGTAAACTACATCCACAAATTGCAAGAGGCCTTGTGGGCCCAGAATGGCCATTCCGTTGCCTCCCATaGCCCCATTCTCATCGTCCT | + |
|
Preference number: 5 (lower is better) Translates to: ESKLHPQIARGLVGPEWPFRCLP*PHSHRP Trigger: AGGACGATGAGAATGGGGCAATGGGAGGCAACGGAA...TGGCCATTCTGGGCCCACAAGGCCTCTTGCAATTTGTGGATGTAGTTTACTCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| CDS CAA 72 bp | CCCCGGGCACTGCCTCGAGCGCCTCCGCGGCCGCCCTaGGCGGAACAGCTGTCACAGAGGAAGGCGGCGGCC | + |
|
Preference number: 6 (lower is better) Translates to: PRALPRAPPRPP*AEQLSQRKAAA Trigger: GGCCGCCGCCTTCCTCTGTGACAGCTGTTCCGCCAAGGGCGGCCGCGGAGGCGCTCGAGGCAGTGCCCGGGG 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| CDS CCA 72 bp | CCCGGGCACTGCCTCGAGCGCCTCCGCGGCCGCCCTTaGCGGAACAGCTGTCACAGAGGAAGGCGGCGGCCA | + |
|
Preference number: 6 (lower is better) Translates to: PGHCLERLRGRP*RNSCHRGRRRP Trigger: TGGCCGCCGCCTTCCTCTGTGACAGCTGTTCCGCCAAGGGCGGCCGCGGAGGCGCTCGAGGCAGTGCCCGGG 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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| CDS GCA 72 bp | AGGCCCAGTAGCTGTAGACTCCTCGGTCGGTTCCGTTaGCTCCCATTGCCCCATTCTCATCGTCCTCCAGGC | + |
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Preference number: 6 (lower is better) Translates to: RPSSCRLLGRFR*LPLPHSHRPPG Trigger: GCCTGGAGGACGATGAGAATGGGGCAATGGGAGGCAACGGAACCGACCGAGGAGTCTACAGCTACTGGGCCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059241.8 ENSMUST00000156791.2 |
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| CDS TCA 72 bp | CAGAAGCAGACAAATACGTGGGCTGTGCACGGACCCTaGGCCGGAAGTCCAGGCCCAGTAGCTGTAGACTCC | + |
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Preference number: 6 (lower is better) Translates to: QKQTNTWAVHGP*AGSPGPVAVDS Trigger: GGAGTCTACAGCTACTGGGCCTGGACTTCCGGCTCAGGGTCCGTGCACAGCCCACGTATTTGTCTGCTTCTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059241.8 |
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