Pregenerated sensors for SPRED1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027351Ensembl transcript IDs: ENSMUST00000028829.13, ENSMUST00000110901.2
Found 116 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TGGTCTAAAGCCATCCAGCAGGTGGCACTGCAGCTCCGCAAGCACTaGTCAGGAAATCTAAGGCTTCCCCACAGGCTGCAAGCATCCTCT | + |
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Preference number: 1 (lower is better) Translates to: WSKAIQQVALQLRKH*SGNLRLPHRLQASS Trigger: AGAGGATGCTTGCAGCCTGTGGGGAAGCCTTAGATTTCCTGAGCAGTGCTTGCGGAGCTGCAGTGCCACCTGCTGGATGGCTTTAGACCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
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| 3UTR CCA 90 bp | CCACAGCCCTCCTTTACTGGAGACACCATTTCCATCTTTCAGCGCTaGTCTAAAGCCATCCAGCAGGTGGCACTGCAGCTCCGCAAGCAC | + |
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Preference number: 1 (lower is better) Translates to: PQPSFTGDTISIFQR*SKAIQQVALQLRKH Trigger: GTGCTTGCGGAGCTGCAGTGCCACCTGCTGGATGGCTTTAGACCAGCGCTGAAAGATGGAAATGGTGTCTCCAGTAAAGGAGGGCTGTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
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| 3UTR TCA 90 bp | ATCACAAGAACTGATGAGTTCTGCTTCCTCCACGCATGGCCCCAATaGTACCGGCAAGATTCCATATTGCTTGCCAACAGCTTCCACAAA | + |
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Preference number: 1 (lower is better) Translates to: ITRTDEFCFLHAWPQ*YRQDSILLANSFHK Trigger: TTTGTGGAAGCTGTTGGCAAGCAATATGGAATCTTGCCGGTATCATTGGGGCCATGCGTGGAGGAAGCAGAACTCATCAGTTCTTGTGAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
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| 3UTR TCA 90 bp | AGGAGAAGCAAGTTTGACCCAGAGAACCAGATGGCACTGTACACATaGATCCAAAGTGCATTTGTAATAGTTCAGAAGCTCATTTTAGGC | + |
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Preference number: 1 (lower is better) Translates to: RRSKFDPENQMALYT*IQSAFVIVQKLILG Trigger: GCCTAAAATGAGCTTCTGAACTATTACAAATGCACTTTGGATTCATGTGTACAGTGCCATCTGGTTCTCTGGGTCAAACTTGCTTCTCCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
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| 3UTR TCA 90 bp | GCGACAGGAATGTGGTGTATAAGATTTCCATTCACAATGGTGGATTaGATACTTTCCTGGGAGAATTCTGCATATGTGTTACTGCAAAGT | + |
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Preference number: 1 (lower is better) Translates to: ATGMWCIRFPFTMVD*ILSWENSAYVLLQS Trigger: ACTTTGCAGTAACACATATGCAGAATTCTCCCAGGAAAGTATTCAATCCACCATTGTGAATGGAAATCTTATACACCACATTCCTGTCGC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
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| 3UTR CCA 90 bp | CACACCTTGCTCCAACCTGAATTACAAACCCAGAACTTACAAATATaGATAATCACTCATAAGGAAAACCAGGACTCTACTTCAGCAAGA | + |
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Preference number: 1 (lower is better) Translates to: HTLLQPELQTQNLQI*IITHKENQDSTSAR Trigger: TCTTGCTGAAGTAGAGTCCTGGTTTTCCTTATGAGTGATTATCCATATTTGTAAGTTCTGGGTTTGTAATTCAGGTTGGAGCAAGGTGTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
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| 3UTR CCA 90 bp | AAGAGGAAGGATAATATAAGTGTTCTAGGAAATGTCAACTGCCTGTaGGAATGCAGATGGCAAGGTTATTTCAAATTGTTTCTGACTACA | + |
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Preference number: 1 (lower is better) Translates to: KRKDNISVLGNVNCL*ECRWQGYFKLFLTT Trigger: TGTAGTCAGAAACAATTTGAAATAACCTTGCCATCTGCATTCCCACAGGCAGTTGACATTTCCTAGAACACTTATATTATCCTTCCTCTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110901.2 |
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| 3UTR CCA 90 bp | GAATATCCTTGCAAATCAGTAAGAGAAGACCAGACAACTCAGTATTaGTTTGCTAACACACTAGTCATCAGAAAAGTGAAACTTAAAGTC | + |
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Preference number: 1 (lower is better) Translates to: EYPCKSVREDQTTQY*FANTLVIRKVKLKV Trigger: GACTTTAAGTTTCACTTTTCTGATGACTAGTGTGTTAGCAAACCAATACTGAGTTGTCTGGTCTTCTCTTACTGATTTGCAAGGATATTC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110901.2 |
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| 3UTR-3UTR GCA 90 bp | CAGCGCTGGTCTAAAGCCATCCAGCAGGTGGCACTGCAGCTCCGCAAGCACTGCGGCTTCCCCACAGGCTaGAAGCATCCTCTGAGAACT | + |
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Preference number: 2 (lower is better) Translates to: QRWSKAIQQVALQLRKHCGFPTG*KHPLRT Trigger: AGTTCTCAGAGGATGCTTGCAGCCTGTGGGGAAGCC...GCAGTGCTTGCGGAGCTGCAGTGCCACCTGCTGGATGGCTTTAGACCAGCGCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
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| 3UTR-3UTR GCA 90 bp | CAGCGCTGGTCTAAAGCCATCCAGCAGGTGGCACTGCAGCTCCGCAAGCACTGCAGAACTGATGAGTTCTaGTTCCTCCACGCATGGCCC | + |
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Preference number: 2 (lower is better) Translates to: QRWSKAIQQVALQLRKHCRTDEF*FLHAWP Trigger: GGGCCATGCGTGGAGGAAGCAGAACTCATCAGTTCT...GCAGTGCTTGCGGAGCTGCAGTGCCACCTGCTGGATGGCTTTAGACCAGCGCTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
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| 3UTR-3UTR CCA 90 bp | CAGCGCTGGTCTAAAGCCATCCAGCAGGTGGCACTGCAGCTCCGCAAGCACTGCCAGCTGTGCGAGTTCTaGCTCAGCAGAGTGAGAAAT | + |
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Preference number: 2 (lower is better) Translates to: QRWSKAIQQVALQLRKHCQLCEF*LSRVRN Trigger: ATTTCTCACTCTGCTGAGCCAGAACTCGCACAGCTG...GCAGTGCTTGCGGAGCTGCAGTGCCACCTGCTGGATGGCTTTAGACCAGCGCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
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| 3UTR-3UTR TCA 90 bp | TTTCAGCGCTGGTCTAAAGCCATCCAGCAGGTGGCACTGCAGCTCCGCAAGCACTCTGGCTCAGCAGAGTaGGAAATGGAGATCTCAAGC | + |
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Preference number: 2 (lower is better) Translates to: FQRWSKAIQQVALQLRKHSGSAE*EMEISS Trigger: GCTTGAGATCTCCATTTCTCACTCTGCTGAGCCAGA...GTGCTTGCGGAGCTGCAGTGCCACCTGCTGGATGGCTTTAGACCAGCGCTGAAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
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| 3UTR-3UTR TCA 90 bp | TTTCAGCGCTGGTCTAAAGCCATCCAGCAGGTGGCACTGCAGCTCCGCAAGCACACACAAGCCGAAGTGTaGCACATAAAACTGACTGCA | + |
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Preference number: 2 (lower is better) Translates to: FQRWSKAIQQVALQLRKHTQAEV*HIKLTA Trigger: TGCAGTCAGTTTTATGTGTCACACTTCGGCTTGTGT...GTGCTTGCGGAGCTGCAGTGCCACCTGCTGGATGGCTTTAGACCAGCGCTGAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
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| 3UTR-3UTR CCA 90 bp | CAGCGCTGGTCTAAAGCCATCCAGCAGGTGGCACTGCAGCTCCGCAAGCACTGCTTGTTCAGTTTAATCTaGGGCAAAAGAAGAAAGCCA | + |
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Preference number: 2 (lower is better) Translates to: QRWSKAIQQVALQLRKHCLFSLI*GKRRKP Trigger: TGGCTTTCTTCTTTTGCCCCAGATTAAACTGAACAA...GCAGTGCTTGCGGAGCTGCAGTGCCACCTGCTGGATGGCTTTAGACCAGCGCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
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| 3UTR-3UTR TCA 90 bp | AGCCCACAGCCCTCCTTTACTGGAGACACCATTTCCATCTTTCAGCGCTGGTCTGAAACCAAGCTCCTCTaGAAACAGCAAGGACGAAGA | + |
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Preference number: 2 (lower is better) Translates to: SPQPSFTGDTISIFQRWSETKLL*KQQGRR Trigger: TCTTCGTCCTTGCTGTTTTCAGAGGAGCTTGGTTTC...AGACCAGCGCTGAAAGATGGAAATGGTGTCTCCAGTAAAGGAGGGCTGTGGGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
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| 3UTR-3UTR CCA 90 bp | TTTCAGCGCTGGTCTAAAGCCATCCAGCAGGTGGCACTGCAGCTCCGCAAGCACATGACACTGAAAACCTaGAGAATGGACTTCAAATGG | + |
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Preference number: 2 (lower is better) Translates to: FQRWSKAIQQVALQLRKHMTLKT*RMDFKW Trigger: CCATTTGAAGTCCATTCTCCAGGTTTTCAGTGTCAT...GTGCTTGCGGAGCTGCAGTGCCACCTGCTGGATGGCTTTAGACCAGCGCTGAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
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| 3UTR-3UTR GCA 90 bp | TTTCAGCGCTGGTCTAAAGCCATCCAGCAGGTGGCACTGCAGCTCCGCAAGCACATAACCAGAAATGACTaGCTTCTGAAAATGCTCTGT | + |
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Preference number: 2 (lower is better) Translates to: FQRWSKAIQQVALQLRKHITRND*LLKMLC Trigger: ACAGAGCATTTTCAGAAGGCAGTCATTTCTGGTTAT...GTGCTTGCGGAGCTGCAGTGCCACCTGCTGGATGGCTTTAGACCAGCGCTGAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
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| 3UTR-3UTR CCA 90 bp | TTTCAGCGCTGGTCTAAAGCCATCCAGCAGGTGGCACTGCAGCTCCGCAAGCACCATCAGTTTCTTTTCTaGACTGGCTTGAATTCATGT | + |
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Preference number: 2 (lower is better) Translates to: FQRWSKAIQQVALQLRKHHQFLF*TGLNSC Trigger: ACATGAATTCAAGCCAGTCCAGAAAAGAAACTGATG...GTGCTTGCGGAGCTGCAGTGCCACCTGCTGGATGGCTTTAGACCAGCGCTGAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
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| 3UTR-3UTR TCA 90 bp | AGCCCACAGCCCTCCTTTACTGGAGACACCATTTCCATCTTTCAGCGCTGGTCTGAAATGACTGCCTTCTaGAAATGCTCTGTGATCTGT | + |
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Preference number: 2 (lower is better) Translates to: SPQPSFTGDTISIFQRWSEMTAF*KCSVIC Trigger: ACAGATCACAGAGCATTTTCAGAAGGCAGTCATTTC...AGACCAGCGCTGAAAGATGGAAATGGTGTCTCCAGTAAAGGAGGGCTGTGGGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
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| 3UTR-3UTR GCA 90 bp | ACAGCTGTGCGAGTTCTGGCTCAGCAGAGTGAGAAATGGAGATCTCAAGCGGAAGTGGTGGCAGATATGTaGACATCTACCTCAGAACTA | + |
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Preference number: 2 (lower is better) Translates to: TAVRVLAQQSEKWRSQAEVVADM*TSTSEL Trigger: TAGTTCTGAGGTAGATGTGCACATATCTGCCACCAC...TTCCGCTTGAGATCTCCATTTCTCACTCTGCTGAGCCAGAACTCGCACAGCTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
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| 3UTR-3UTR GCA 90 bp | AGCCCACAGCCCTCCTTTACTGGAGACACCATTTCCATCTTTCAGCGCTGGTCTAAGATCATCTATCTGTaGAGCAGCCTCCAATGTAGA | + |
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Preference number: 2 (lower is better) Translates to: SPQPSFTGDTISIFQRWSKIIYL*SSLQCR Trigger: TCTACATTGGAGGCTGCTGCACAGATAGATGATCTT...AGACCAGCGCTGAAAGATGGAAATGGTGTCTCCAGTAAAGGAGGGCTGTGGGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
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| 3UTR-3UTR CCA 90 bp | TTTCAGCGCTGGTCTAAAGCCATCCAGCAGGTGGCACTGCAGCTCCGCAAGCACGATTTCCATTCACAATaGTGGATTGAATACTTTCCT | + |
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Preference number: 2 (lower is better) Translates to: FQRWSKAIQQVALQLRKHDFHSQ*WIEYFP Trigger: AGGAAAGTATTCAATCCACCATTGTGAATGGAAATC...GTGCTTGCGGAGCTGCAGTGCCACCTGCTGGATGGCTTTAGACCAGCGCTGAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
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| 3UTR-3UTR GCA 90 bp | AAAGCCAACACAAGCCGAAGTGTGACACATAAAACTGACTGCACAGAAATGACATCCCAGAACATGCCATaGACTCAGGGAAACAGGCAC | + |
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Preference number: 2 (lower is better) Translates to: KANTSRSVTHKTDCTEMTSQNMP*TQGNRH Trigger: GTGCCTGTTTCCCTGAGTGCATGGCATGTTCTGGGA...TGTCATTTCTGTGCAGTCAGTTTTATGTGTCACACTTCGGCTTGTGTTGGCTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
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| 3UTR-3UTR TCA 90 bp | AGTAATAAGCACAGAAAATCAGTGAAACAGCTGTGCGAGTTCTGGCTCAGCAGAGCTAATTCCTGGAGATaGAGGTTTAAGCTCATGCCG | + |
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Preference number: 2 (lower is better) Translates to: SNKHRKSVKQLCEFWLSRANSWR*RFKLMP Trigger: CGGCATGAGCTTAAACCTTCATCTCCAGGAATTAGC...TCTGCTGAGCCAGAACTCGCACAGCTGTTTCACTGATTTTCTGTGCTTATTACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
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| 3UTR-3UTR TCA 90 bp | ACAGCTGTGCGAGTTCTGGCTCAGCAGAGTGAGAAATGGAGATCTCAAGCGGAACAGAATGTACAGATATaGCTCAATATAAACTGCAGC | + |
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Preference number: 2 (lower is better) Translates to: TAVRVLAQQSEKWRSQAEQNVQI*LNINCS Trigger: GCTGCAGTTTATATTGAGTCATATCTGTACATTCTG...TTCCGCTTGAGATCTCCATTTCTCACTCTGCTGAGCCAGAACTCGCACAGCTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
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| 3UTR-3UTR GCA 90 bp | ATTTCTCTACTATCATTTACTAGCAACTTTTTGGTGTTCCCTGTAAGACGCAGATCAGTGAAACAGCTGTaGGAGTTCTGGCTCAGCAGA | + |
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Preference number: 2 (lower is better) Translates to: ISLLSFTSNFLVFPVRRRSVKQL*EFWLSR Trigger: TCTGCTGAGCCAGAACTCGCACAGCTGTTTCACTGA...TCTGCGTCTTACAGGGAACACCAAAAAGTTGCTAGTAAATGATAGTAGAGAAAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
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| 3UTR-3UTR CCA 90 bp | TACATTGTTCAGTTTAATCTGGGGCAAAAGAAGAAAGCCAACACAAGCCGAAGTCAGCAGAGTGAGAAATaGAGATCTCAAGCGGAAACT | + |
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Preference number: 2 (lower is better) Translates to: YIVQFNLGQKKKANTSRSQQSEK*RSQAET Trigger: AGTTTCCGCTTGAGATCTCCATTTCTCACTCTGCTG...ACTTCGGCTTGTGTTGGCTTTCTTCTTTTGCCCCAGATTAAACTGAACAATGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
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| 3UTR-3UTR GCA 90 bp | AAAGCCAACACAAGCCGAAGTGTGACACATAAAACTGACTGCACAGAAATGACATTCCTGGGAGAATTCTaGATATGTGTTACTGCAAAG | + |
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Preference number: 2 (lower is better) Translates to: KANTSRSVTHKTDCTEMTFLGEF*ICVTAK Trigger: CTTTGCAGTAACACATATGCAGAATTCTCCCAGGAA...TGTCATTTCTGTGCAGTCAGTTTTATGTGTCACACTTCGGCTTGTGTTGGCTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
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| 3UTR-3UTR GCA 90 bp | TGCAAATCAGTAAGAGAAGACCAGACAACTCAGTATTGGTTTGCTAACACACTAAACTGCCTGTGGGAATaGAGATGGCAAGGTTATTTC | + |
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Preference number: 2 (lower is better) Translates to: CKSVREDQTTQYWFANTLNCLWE*RWQGYF Trigger: GAAATAACCTTGCCATCTGCATTCCCACAGGCAGTT...TAGTGTGTTAGCAAACCAATACTGAGTTGTCTGGTCTTCTCTTACTGATTTGCA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110901.2 |
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| 3UTR-3UTR CCA 90 bp | AAAGCCAACACAAGCCGAAGTGTGACACATAAAACTGACTGCACAGAAATGACAAACACATATGGAATGTaGTGGCAGATATGTGCACAT | + |
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Preference number: 2 (lower is better) Translates to: KANTSRSVTHKTDCTEMTNTYGM*WQICAH Trigger: ATGTGCACATATCTGCCACCACATTCCATATGTGTT...TGTCATTTCTGTGCAGTCAGTTTTATGTGTCACACTTCGGCTTGTGTTGGCTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
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| 3UTR-3UTR GCA 90 bp | TACATTGTTCAGTTTAATCTGGGGCAAAAGAAGAAAGCCAACACAAGCCGAAGTAGATTCCATATTGCTTaGCAACAGCTTCCACAAATC | + |
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Preference number: 2 (lower is better) Translates to: YIVQFNLGQKKKANTSRSRFHIA*QQLPQI Trigger: GATTTGTGGAAGCTGTTGGCAAGCAATATGGAATCT...ACTTCGGCTTGTGTTGGCTTTCTTCTTTTGCCCCAGATTAAACTGAACAATGTA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
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| 3UTR-3UTR GCA 90 bp | ATTTCTCTACTATCATTTACTAGCAACTTTTTGGTGTTCCCTGTAAGACGCAGAGGCAAGATTCCATATTaGTTGCCAACAGCTTCCACA | + |
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Preference number: 2 (lower is better) Translates to: ISLLSFTSNFLVFPVRRRGKIPY*LPTAST Trigger: TGTGGAAGCTGTTGGCAAGCAATATGGAATCTTGCC...TCTGCGTCTTACAGGGAACACCAAAAAGTTGCTAGTAAATGATAGTAGAGAAAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
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| 3UTR-3UTR GCA 90 bp | ATTTCTCTACTATCATTTACTAGCAACTTTTTGGTGTTCCCTGTAAGACGCAGACCTGAGGGAGTATTTTaGAACAATCCCTCACAAGAG | + |
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Preference number: 2 (lower is better) Translates to: ISLLSFTSNFLVFPVRRRPEGVF*NNPSQE Trigger: CTCTTGTGAGGGATTGTTGCAAAATACTCCCTCAGG...TCTGCGTCTTACAGGGAACACCAAAAAGTTGCTAGTAAATGATAGTAGAGAAAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
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| 3UTR-3UTR GCA 90 bp | GTAAGGCATTTACCTAACAAAGGATTTAGTTCCAAAATGCAAGAATATCCTTGCCTAGGAAATGTCAACTaGCTGTGGGAATGCAGATGG | + |
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Preference number: 2 (lower is better) Translates to: VRHLPNKGFSSKMQEYPCLGNVN*LWECRW Trigger: CCATCTGCATTCCCACAGGCAGTTGACATTTCCTAG...GCAAGGATATTCTTGCATTTTGGAACTAAATCCTTTGTTAGGTAAATGCCTTAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110901.2 |
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| 3UTR-3UTR CCA 90 bp | TACATTGTTCAGTTTAATCTGGGGCAAAAGAAGAAAGCCAACACAAGCCGAAGTTCTGCGACAGGAATGTaGTGTATAAGATTTCCATTC | + |
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Preference number: 2 (lower is better) Translates to: YIVQFNLGQKKKANTSRSSATGM*CIRFPF Trigger: GAATGGAAATCTTATACACCACATTCCTGTCGCAGA...ACTTCGGCTTGTGTTGGCTTTCTTCTTTTGCCCCAGATTAAACTGAACAATGTA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
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| 3UTR-3UTR TCA 90 bp | ATTCACACCTTGCTCCAACCTGAATTACAAACCCAGAACTTACAAATATGGATACACTGCTTTCTTTCCTaGGGGAGTATTTTGCAACAA | + |
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Preference number: 2 (lower is better) Translates to: IHTLLQPELQTQNLQIWIHCFLS*GSILQQ Trigger: TTGTTGCAAAATACTCCCTCAGGAAAGAAAGCAGTG...TATCCATATTTGTAAGTTCTGGGTTTGTAATTCAGGTTGGAGCAAGGTGTGAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
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| 3UTR-3UTR CCA 90 bp | TACATTGTTCAGTTTAATCTGGGGCAAAAGAAGAAAGCCAACACAAGCCGAAGTAAGAAAACAACTTGCTaGCTGAATACCACAGAAACA | + |
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Preference number: 2 (lower is better) Translates to: YIVQFNLGQKKKANTSRSKKTTC*LNTTET Trigger: TGTTTCTGTGGTATTCAGCCAGCAAGTTGTTTTCTT...ACTTCGGCTTGTGTTGGCTTTCTTCTTTTGCCCCAGATTAAACTGAACAATGTA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
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| 3UTR-3UTR CCA 90 bp | AATGCAAGAATATCCTTGCAAATCAGTAAGAGAAGACCAGACAACTCAGTATTGGTTCAGTGTTGTCTTTaGTTTCTTGTACAACGCCGT | + |
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Preference number: 2 (lower is better) Translates to: NARISLQISKRRPDNSVLVQCCL*FLVQRR Trigger: ACGGCGTTGTACAAGAAACCAAAGACAACACTGAAC...CAATACTGAGTTGTCTGGTCTTCTCTTACTGATTTGCAAGGATATTCTTGCATT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110901.2 |
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| 3UTR-3UTR TCA 90 bp | ATTTCTCTACTATCATTTACTAGCAACTTTTTGGTGTTCCCTGTAAGACGCAGACTAACTTTTCTGTACTaGAATCACTGTCCCTTAGTG | + |
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Preference number: 2 (lower is better) Translates to: ISLLSFTSNFLVFPVRRRLTFLY*NHCPLV Trigger: CACTAAGGGACAGTGATTTCAGTACAGAAAAGTTAG...TCTGCGTCTTACAGGGAACACCAAAAAGTTGCTAGTAAATGATAGTAGAGAAAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
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| 3UTR-3UTR TCA 90 bp | ATTTCTCTACTATCATTTACTAGCAACTTTTTGGTGTTCCCTGTAAGACGCAGAAAACAACTTGCTGGCTaGATACCACAGAAACAAAAC | + |
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Preference number: 2 (lower is better) Translates to: ISLLSFTSNFLVFPVRRRKQLAG*IPQKQN Trigger: GTTTTGTTTCTGTGGTATTCAGCCAGCAAGTTGTTT...TCTGCGTCTTACAGGGAACACCAAAAAGTTGCTAGTAAATGATAGTAGAGAAAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
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| 3UTR-3UTR TCA 90 bp | ATTTCTCTACTATCATTTACTAGCAACTTTTTGGTGTTCCCTGTAAGACGCAGACTTCACCAGTTTTGTTaGGCTATCTGCTTACATTCT | + |
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Preference number: 2 (lower is better) Translates to: ISLLSFTSNFLVFPVRRRLHQFC*AICLHS Trigger: AGAATGTAAGCAGATAGCTCAACAAAACTGGTGAAG...TCTGCGTCTTACAGGGAACACCAAAAAGTTGCTAGTAAATGATAGTAGAGAAAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
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| 3UTR-3UTR TCA 90 bp | GTAAGGCATTTACCTAACAAAGGATTTAGTTCCAAAATGCAAGAATATCCTTGCCTGCATGTATCTTCCTaGAATCAACTGTGGAAGTTC | + |
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Preference number: 2 (lower is better) Translates to: VRHLPNKGFSSKMQEYPCLHVSS*NQLWKF Trigger: GAACTTCCACAGTTGATTTCAGGAAGATACATGCAG...GCAAGGATATTCTTGCATTTTGGAACTAAATCCTTTGTTAGGTAAATGCCTTAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110901.2 |
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| 3UTR-3UTR GCA 90 bp | ATTTCTCTACTATCATTTACTAGCAACTTTTTGGTGTTCCCTGTAAGACGCAGACTGCATATGTGTTACTaGAAAGTAACTTTGCTCCTG | + |
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Preference number: 2 (lower is better) Translates to: ISLLSFTSNFLVFPVRRRLHMCY*KVTLLL Trigger: CAGGAGCAAAGTTACTTTGCAGTAACACATATGCAG...TCTGCGTCTTACAGGGAACACCAAAAAGTTGCTAGTAAATGATAGTAGAGAAAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
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| 3UTR-3UTR GCA 90 bp | TACATTGTTCAGTTTAATCTGGGGCAAAAGAAGAAAGCCAACACAAGCCGAAGTACACATAAAACTGACTaGACAGAAATGACACTGAAA | + |
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Preference number: 2 (lower is better) Translates to: YIVQFNLGQKKKANTSRSTHKTD*TEMTLK Trigger: TTTCAGTGTCATTTCTGTGCAGTCAGTTTTATGTGT...ACTTCGGCTTGTGTTGGCTTTCTTCTTTTGCCCCAGATTAAACTGAACAATGTA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
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| 3UTR-3UTR GCA 90 bp | ATTTCTCTACTATCATTTACTAGCAACTTTTTGGTGTTCCCTGTAAGACGCAGAATAATACAAATGCTCTaGGACAGGAATGTGGTGTAT | + |
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Preference number: 2 (lower is better) Translates to: ISLLSFTSNFLVFPVRRRIIQML*DRNVVY Trigger: ATACACCACATTCCTGTCGCAGAGCATTTGTATTAT...TCTGCGTCTTACAGGGAACACCAAAAAGTTGCTAGTAAATGATAGTAGAGAAAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
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| 3UTR-3UTR CCA 90 bp | GTAAGGCATTTACCTAACAAAGGATTTAGTTCCAAAATGCAAGAATATCCTTGCCTGTGGGAATGCAGATaGCAAGGTTATTTCAAATTG | + |
|
Preference number: 2 (lower is better) Translates to: VRHLPNKGFSSKMQEYPCLWECR*QGYFKL Trigger: CAATTTGAAATAACCTTGCCATCTGCATTCCCACAG...GCAAGGATATTCTTGCATTTTGGAACTAAATCCTTTGTTAGGTAAATGCCTTAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110901.2 |
||
| 3UTR TCA 72 bp | CTCACCCCCGATTTCTCTGGTGGGCACTGGCCACCCTaGACAGCCCACAGCCCTCCTTTACTGGAGACACCA | + |
|
Preference number: 3 (lower is better) Translates to: LTPDFSGGHWPP*TAHSPPLLETP Trigger: TGGTGTCTCCAGTAAAGGAGGGCTGTGGGCTGTTCAGGGTGGCCAGTGCCCACCAGAGAAATCGGGGGTGAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
||
| 3UTR GCA 72 bp | GCCATCCAGCAGGTGGCACTGCAGCTCCGCAAGCACTaGTCAGGAAATCTAAGGCTTCCCCACAGGCTGCAA | + |
|
Preference number: 3 (lower is better) Translates to: AIQQVALQLRKH*SGNLRLPHRLQ Trigger: TTGCAGCCTGTGGGGAAGCCTTAGATTTCCTGAGCAGTGCTTGCGGAGCTGCAGTGCCACCTGCTGGATGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
||
| 3UTR CCA 72 bp | CCATCTTTCAGCGCTGGTCTAAAGCCATCCAGCAGGTaGCACTGCAGCTCCGCAAGCACTGCTCAGGAAATC | + |
|
Preference number: 3 (lower is better) Translates to: PSFSAGLKPSSR*HCSSASTAQEI Trigger: GATTTCCTGAGCAGTGCTTGCGGAGCTGCAGTGCCACCTGCTGGATGGCTTTAGACCAGCGCTGAAAGATGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
||
| 3UTR CCA 72 bp | TCCTTTACTGGAGACACCATTTCCATCTTTCAGCGCTaGTCTAAAGCCATCCAGCAGGTGGCACTGCAGCTC | + |
|
Preference number: 3 (lower is better) Translates to: SFTGDTISIFQR*SKAIQQVALQL Trigger: GAGCTGCAGTGCCACCTGCTGGATGGCTTTAGACCAGCGCTGAAAGATGGAAATGGTGTCTCCAGTAAAGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
||
| 3UTR-3UTR CAA 90 bp | CAGCGCTGGTCTAAAGCCATCCAGCAGGTGGCACTGCAGCTCCGCAAGCACTGCTTTACTTCACCAGTTTaGTTGAGCTATCTGCTTACA | + |
|
Preference number: 3 (lower is better) Translates to: QRWSKAIQQVALQLRKHCFTSPV*LSYLLT Trigger: TGTAAGCAGATAGCTCAACAAAACTGGTGAAGTAAA...GCAGTGCTTGCGGAGCTGCAGTGCCACCTGCTGGATGGCTTTAGACCAGCGCTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
||
| 3UTR TCA 72 bp | ACTGATGAGTTCTGCTTCCTCCACGCATGGCCCCAATaGTACCGGCAAGATTCCATATTGCTTGCCAACAGC | + |
|
Preference number: 3 (lower is better) Translates to: TDEFCFLHAWPQ*YRQDSILLANS Trigger: GCTGTTGGCAAGCAATATGGAATCTTGCCGGTATCATTGGGGCCATGCGTGGAGGAAGCAGAACTCATCAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
||
| 3UTR-3UTR CAA 90 bp | AGTAATAAGCACAGAAAATCAGTGAAACAGCTGTGCGAGTTCTGGCTCAGCAGACGGCAAGATTCCATATaGCTTGCCAACAGCTTCCAC | + |
|
Preference number: 3 (lower is better) Translates to: SNKHRKSVKQLCEFWLSRRQDSI*LANSFH Trigger: GTGGAAGCTGTTGGCAAGCAATATGGAATCTTGCCG...TCTGCTGAGCCAGAACTCGCACAGCTGTTTCACTGATTTTCTGTGCTTATTACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
||
| 3UTR TCA 72 bp | ATCCATAAAATTCTCTCCACCACGTTCTCTGCACTTTaGAGACCGACACGAACACTAAGAAATGCCTGTGTG | + |
|
Preference number: 3 (lower is better) Translates to: IHKILSTTFSAL*RPTRTLRNACV Trigger: CACACAGGCATTTCTTAGTGTTCGTGTCGGTCTTCAAAGTGCAGAGAACGTGGTGGAGAGAATTTTATGGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
||
| 3UTR GCA 72 bp | GTGAGTAATAAGCACAGAAAATCAGTGAAACAGCTGTaGGAGTTCTGGCTCAGCAGAGTGAGAAATGGAGAT | + |
|
Preference number: 3 (lower is better) Translates to: VSNKHRKSVKQL*EFWLSRVRNGD Trigger: ATCTCCATTTCTCACTCTGCTGAGCCAGAACTCGCACAGCTGTTTCACTGATTTTCTGTGCTTATTACTCAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
||
| 3UTR GCA 72 bp | ACTACTCAACACATATGGAATGTGGTGGCAGATATGTaGACATCTACCTCAGAACTAGGAAGGGCAAGAAAA | + |
|
Preference number: 3 (lower is better) Translates to: TTQHIWNVVADM*TSTSELGRARK Trigger: TTTTCTTGCCCTTCCTAGTTCTGAGGTAGATGTGCACATATCTGCCACCACATTCCATATGTGTTGAGTAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
||
| 3UTR TCA 72 bp | AAGTTTGACCCAGAGAACCAGATGGCACTGTACACATaGATCCAAAGTGCATTTGTAATAGTTCAGAAGCTC | + |
|
Preference number: 3 (lower is better) Translates to: KFDPENQMALYT*IQSAFVIVQKL Trigger: GAGCTTCTGAACTATTACAAATGCACTTTGGATTCATGTGTACAGTGCCATCTGGTTCTCTGGGTCAAACTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
||
| 3UTR GCA 72 bp | CCTCTGAAAACAGCAAGGACGAAGATCATCTATCTGTaGAGCAGCCTCCAATGTAGAAACAGTAAAAATAAG | + |
|
Preference number: 3 (lower is better) Translates to: PLKTARTKIIYL*SSLQCRNSKNK Trigger: CTTATTTTTACTGTTTCTACATTGGAGGCTGCTGCACAGATAGATGATCTTCGTCCTTGCTGTTTTCAGAGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
||
| 3UTR-3UTR CAA 90 bp | TGCAAATCAGTAAGAGAAGACCAGACAACTCAGTATTGGTTTGCTAACACACTAAAATCACAGACACCTTaGCTCATGGTGCTCTCTGTA | + |
|
Preference number: 3 (lower is better) Translates to: CKSVREDQTTQYWFANTLKSQTP*LMVLSV Trigger: TACAGAGAGCACCATGAGCAAAGGTGTCTGTGATTT...TAGTGTGTTAGCAAACCAATACTGAGTTGTCTGGTCTTCTCTTACTGATTTGCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110901.2 |
||
| 3UTR-3UTR CAA 90 bp | AAAGCCAACACAAGCCGAAGTGTGACACATAAAACTGACTGCACAGAAATGACAGTATTTTTAACCTGTTaGCTGGAGCATATCACACTA | + |
|
Preference number: 3 (lower is better) Translates to: KANTSRSVTHKTDCTEMTVFLTC*LEHITL Trigger: TAGTGTGATATGCTCCAGCAAACAGGTTAAAAATAC...TGTCATTTCTGTGCAGTCAGTTTTATGTGTCACACTTCGGCTTGTGTTGGCTTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
||
| 3UTR TCA 72 bp | CAAAAGCAGTTACAAACTCCTATGTGCGTATTTACATaGTATACTCACAACTCTCAGCCAGTCAGCTCTATG | + |
|
Preference number: 3 (lower is better) Translates to: QKQLQTPMCVFT*YTHNSQPVSSM Trigger: CATAGAGCTGACTGGCTGAGAGTTGTGAGTATATCATGTAAATACGCACATAGGAGTTTGTAACTGCTTTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
||
| 3UTR TCA 72 bp | AAATTCCAAGGTGTTTTCCACACTATGAACATTCAATaGCCTAGTGCCGGTTCTCAGCATCTTTTCCTTTGT | + |
|
Preference number: 3 (lower is better) Translates to: KFQGVFHTMNIQ*PSAGSQHLFLC Trigger: ACAAAGGAAAAGATGCTGAGAACCGGCACTAGGTCATTGAATGTTCATAGTGTGGAAAACACCTTGGAATTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110901.2 |
||
| 3UTR GCA 72 bp | AGAGAACCAGATGGCACTGTACACATGAATCCAAAGTaGATTTGTAATAGTTCAGAAGCTCATTTTAGGCAC | + |
|
Preference number: 3 (lower is better) Translates to: REPDGTVHMNPK*ICNSSEAHFRH Trigger: GTGCCTAAAATGAGCTTCTGAACTATTACAAATGCACTTTGGATTCATGTGTACAGTGCCATCTGGTTCTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
||
| 3UTR CCA 72 bp | GTTCTAGGAAATGTCAACTGCCTGTGGGAATGCAGATaGCAAGGTTATTTCAAATTGTTTCTGACTACAACT | + |
|
Preference number: 3 (lower is better) Translates to: VLGNVNCLWECR*QGYFKLFLTTT Trigger: AGTTGTAGTCAGAAACAATTTGAAATAACCTTGCCATCTGCATTCCCACAGGCAGTTGACATTTCCTAGAAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110901.2 |
||
| 3UTR TCA 72 bp | GAATCTCTCACATGGACACAAACGTTATTAACTAGATaGGTTAACTACTCAACACATATGGAATGTGGTGGC | + |
|
Preference number: 3 (lower is better) Translates to: ESLTWTQTLLTR*VNYSTHMECGG Trigger: GCCACCACATTCCATATGTGTTGAGTAGTTAACTCATCTAGTTAATAACGTTTGTGTCCATGTGAGAGATTC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
||
| 3UTR GCA 72 bp | ATAAGTGTTCTAGGAAATGTCAACTGCCTGTGGGAATaGAGATGGCAAGGTTATTTCAAATTGTTTCTGACT | + |
|
Preference number: 3 (lower is better) Translates to: ISVLGNVNCLWE*RWQGYFKLFLT Trigger: AGTCAGAAACAATTTGAAATAACCTTGCCATCTGCATTCCCACAGGCAGTTGACATTTCCTAGAACACTTAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110901.2 |
||
| 3UTR-3UTR CAA 90 bp | ATTCACACCTTGCTCCAACCTGAATTACAAACCCAGAACTTACAAATATGGATAATTCACAATGGTGGATaGAATACTTTCCTGGGAGAA | + |
|
Preference number: 3 (lower is better) Translates to: IHTLLQPELQTQNLQIWIIHNGG*NTFLGE Trigger: TTCTCCCAGGAAAGTATTCAATCCACCATTGTGAAT...TATCCATATTTGTAAGTTCTGGGTTTGTAATTCAGGTTGGAGCAAGGTGTGAAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
||
| 3UTR CCA 72 bp | CTCCAACCTGAATTACAAACCCAGAACTTACAAATATaGATAATCACTCATAAGGAAAACCAGGACTCTACT | + |
|
Preference number: 3 (lower is better) Translates to: LQPELQTQNLQI*IITHKENQDST Trigger: AGTAGAGTCCTGGTTTTCCTTATGAGTGATTATCCATATTTGTAAGTTCTGGGTTTGTAATTCAGGTTGGAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
||
| 3UTR-3UTR CAA 90 bp | ATTTCTCTACTATCATTTACTAGCAACTTTTTGGTGTTCCCTGTAAGACGCAGAAATAGGAATACCATTTaGGTAATGGCTTCTGAGTTG | + |
|
Preference number: 3 (lower is better) Translates to: ISLLSFTSNFLVFPVRRRNRNTI*VMASEL Trigger: CAACTCAGAAGCCATTACCAAAATGGTATTCCTATT...TCTGCGTCTTACAGGGAACACCAAAAAGTTGCTAGTAAATGATAGTAGAGAAAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
||
| 3UTR TCA 72 bp | ATGTGGTGTATAAGATTTCCATTCACAATGGTGGATTaGATACTTTCCTGGGAGAATTCTGCATATGTGTTA | + |
|
Preference number: 3 (lower is better) Translates to: MWCIRFPFTMVD*ILSWENSAYVL Trigger: TAACACATATGCAGAATTCTCCCAGGAAAGTATTCAATCCACCATTGTGAATGGAAATCTTATACACCACAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
||
| 3UTR TCA 72 bp | ATTGCTTTTGCAAATTTAGCTTTTGGGAACAATGGATaGCAGTGTACCAAAGCAACTGAAAGGTTTCTAATT | + |
|
Preference number: 3 (lower is better) Translates to: IAFANLAFGNNG*QCTKATERFLI Trigger: AATTAGAAACCTTTCAGTTGCTTTGGTACACTGTCATCCATTGTTCCCAAAAGCTAAATTTGCAAAAGCAAT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
||
| 3UTR TCA 72 bp | AAACAAAGAGTCTACCATCTGATACGTCCAATTACATaGTATGACAGAACAAAAGCAGTTACAAACTCCTAT | + |
|
Preference number: 3 (lower is better) Translates to: KQRVYHLIRPIT*YDRTKAVTNSY Trigger: ATAGGAGTTTGTAACTGCTTTTGTTCTGTCATATCATGTAATTGGACGTATCAGATGGTAGACTCTTTGTTT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
||
| CDS-3UTR GCA 90 bp | AGTAATAAGCACAGAAAATCAGTGAAACAGCTGTGCGAGTTCTGGCTCAGCAGAACCACAGCACCCGCATaGCTCACCACAGCGATGGCA | + |
|
Preference number: 4 (lower is better) Translates to: SNKHRKSVKQLCEFWLSRTTAPA*LTTAMA Trigger: TGCCATCGCTGTGGTGAGGCATGCGGGTGCTGTGGT...TCTGCTGAGCCAGAACTCGCACAGCTGTTTCACTGATTTTCTGTGCTTATTACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
||
| CDS-3UTR CCA 90 bp | AAAGCCAACACAAGCCGAAGTGTGACACATAAAACTGACTGCACAGAAATGACACTCGATCAAAAGCCCTaGCATCAGCAGGACTCTGAA | + |
|
Preference number: 4 (lower is better) Translates to: KANTSRSVTHKTDCTEMTLDQKP*HQQDSE Trigger: TTCAGAGTCCTGCTGATGCCAGGGCTTTTGATCGAG...TGTCATTTCTGTGCAGTCAGTTTTATGTGTCACACTTCGGCTTGTGTTGGCTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
||
| CDS-3UTR TCA 90 bp | TCCATATTGCTTGCCAACAGCTTCCACAAATCCAAGTTAGCTAATTCCTGGAGATCGATCTTCCAGTGGTaGAATGTGGGAGTGACCTTA | + |
|
Preference number: 4 (lower is better) Translates to: SILLANSFHKSKLANSWRSIFQW*NVGVTL Trigger: TAAGGTCACTCCCACATTTCACCACTGGAAGATCGA...TCTCCAGGAATTAGCTAACTTGGATTTGTGGAAGCTGTTGGCAAGCAATATGGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
||
| CDS-3UTR TCA 90 bp | AAAGCCAACACAAGCCGAAGTGTGACACATAAAACTGACTGCACAGAAATGACAGCTGACATGTCTGATTaGCTTCAAAGGGACCCTAGT | + |
|
Preference number: 4 (lower is better) Translates to: KANTSRSVTHKTDCTEMTADMSD*LQRDPS Trigger: ACTAGGGTCCCTTTGAAGTCAATCAGACATGTCAGC...TGTCATTTCTGTGCAGTCAGTTTTATGTGTCACACTTCGGCTTGTGTTGGCTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
||
| CDS-3UTR CCA 90 bp | TTTACCAAATCACAGACACCTTTGCTCATGGTGCTCTCTGTAATAAACACTGCACTCGATCAAAAGCCCTaGCATCAGCAGGACTCTGAA | + |
|
Preference number: 4 (lower is better) Translates to: FTKSQTPLLMVLSVINTALDQKP*HQQDSE Trigger: TTCAGAGTCCTGCTGATGCCAGGGCTTTTGATCGAG...TGCAGTGTTTATTACAGAGAGCACCATGAGCAAAGGTGTCTGTGATTTGGTAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110901.2 |
||
| CDS-3UTR CCA 90 bp | ATTCACACCTTGCTCCAACCTGAATTACAAACCCAGAACTTACAAATATGGATAGCCTCACCACAGCGATaGCACATTCTCAAAGGGACG | + |
|
Preference number: 4 (lower is better) Translates to: IHTLLQPELQTQNLQIWIASPQR*HILKGT Trigger: CGTCCCTTTGAGAATGTGCCATCGCTGTGGTGAGGC...TATCCATATTTGTAAGTTCTGGGTTTGTAATTCAGGTTGGAGCAAGGTGTGAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
||
| CDS-3UTR TCA 90 bp | TCCATATTGCTTGCCAACAGCTTCCACAAATCCAAGTTAGCTAATTCCTGGAGACTGGCGTTTTCTTCATaGTTAAACCTTTCCTGGCAG | + |
|
Preference number: 4 (lower is better) Translates to: SILLANSFHKSKLANSWRLAFSS*LNLSWQ Trigger: CTGCCAGGAAAGGTTTAATCATGAAGAAAACGCCAG...TCTCCAGGAATTAGCTAACTTGGATTTGTGGAAGCTGTTGGCAAGCAATATGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
||
| CDS-3UTR TCA 90 bp | TGCAAATCAGTAAGAGAAGACCAGACAACTCAGTATTGGTTTGCTAACACACTAGTCTTCTCACCTGGCTaGCTTGGCTTTGCAAGTAGA | + |
|
Preference number: 4 (lower is better) Translates to: CKSVREDQTTQYWFANTLVFSPG*LGFASR Trigger: TCTACTTGCAAAGCCAAGTCAGCCAGGTGAGAAGAC...TAGTGTGTTAGCAAACCAATACTGAGTTGTCTGGTCTTCTCTTACTGATTTGCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110901.2 |
||
| CDS-3UTR GCA 90 bp | TTTACCAAATCACAGACACCTTTGCTCATGGTGCTCTCTGTAATAAACACTGCACACAGCTCGCACTCGTaGATAACTATTATCGTTGTC | + |
|
Preference number: 4 (lower is better) Translates to: FTKSQTPLLMVLSVINTAHSSHS*ITIIVV Trigger: GACAACGATAATAGTTATGCACGAGTGCGAGCTGTG...TGCAGTGTTTATTACAGAGAGCACCATGAGCAAAGGTGTCTGTGATTTGGTAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110901.2 |
||
| CDS-3UTR CCA 90 bp | AAAGCCAACACAAGCCGAAGTGTGACACATAAAACTGACTGCACAGAAATGACAGCAAGTAGACTCTTCTaGCATTCAGATCTTCAAAGG | + |
|
Preference number: 4 (lower is better) Translates to: KANTSRSVTHKTDCTEMTASRLF*HSDLQR Trigger: CCTTTGAAGATCTGAATGCCAGAAGAGTCTACTTGC...TGTCATTTCTGTGCAGTCAGTTTTATGTGTCACACTTCGGCTTGTGTTGGCTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
||
| CDS-3UTR CCA 90 bp | TGCAAATCAGTAAGAGAAGACCAGACAACTCAGTATTGGTTTGCTAACACACTAATTCGTCTTCTCACCTaGCTGACTTGGCTTTGCAAG | + |
|
Preference number: 4 (lower is better) Translates to: CKSVREDQTTQYWFANTLIRLLT*LTWLCK Trigger: CTTGCAAAGCCAAGTCAGCCAGGTGAGAAGACGAAT...TAGTGTGTTAGCAAACCAATACTGAGTTGTCTGGTCTTCTCTTACTGATTTGCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110901.2 |
||
| CDS-3UTR CCA 90 bp | ATTTCTCTACTATCATTTACTAGCAACTTTTTGGTGTTCCCTGTAAGACGCAGAAAAGGGACCCTAGTTTaGGACTTTAGGCTCCCACAT | + |
|
Preference number: 4 (lower is better) Translates to: ISLLSFTSNFLVFPVRRRKGTLV*DFRLPH Trigger: ATGTGGGAGCCTAAAGTCCCAAACTAGGGTCCCTTT...TCTGCGTCTTACAGGGAACACCAAAAAGTTGCTAGTAAATGATAGTAGAGAAAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
||
| CDS-3UTR TCA 90 bp | GTAAGGCATTTACCTAACAAAGGATTTAGTTCCAAAATGCAAGAATATCCTTGCTCGATCTTCCAGTGGTaGAATGTGGGAGTGACCTTA | + |
|
Preference number: 4 (lower is better) Translates to: VRHLPNKGFSSKMQEYPCSIFQW*NVGVTL Trigger: TAAGGTCACTCCCACATTTCACCACTGGAAGATCGA...GCAAGGATATTCTTGCATTTTGGAACTAAATCCTTTGTTAGGTAAATGCCTTAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110901.2 |
||
| CDS-3UTR GCA 90 bp | ATTCACACCTTGCTCCAACCTGAATTACAAACCCAGAACTTACAAATATGGATACACAGCTCGCACTCGTaGATAACTATTATCGTTGTC | + |
|
Preference number: 4 (lower is better) Translates to: IHTLLQPELQTQNLQIWIHSSHS*ITIIVV Trigger: GACAACGATAATAGTTATGCACGAGTGCGAGCTGTG...TATCCATATTTGTAAGTTCTGGGTTTGTAATTCAGGTTGGAGCAAGGTGTGAAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
||
| CDS-3UTR TCA 90 bp | ATTCACACCTTGCTCCAACCTGAATTACAAACCCAGAACTTACAAATATGGATAGAGTCTGACATACAATaGTATAGCATGCTCTCAGCA | + |
|
Preference number: 4 (lower is better) Translates to: IHTLLQPELQTQNLQIWIESDIQ*YSMLSA Trigger: TGCTGAGAGCATGCTATATCATTGTATGTCAGACTC...TATCCATATTTGTAAGTTCTGGGTTTGTAATTCAGGTTGGAGCAAGGTGTGAAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
||
| CDS-3UTR GCA 90 bp | ATTTCTCTACTATCATTTACTAGCAACTTTTTGGTGTTCCCTGTAAGACGCAGATACAATGATATAGCATaGTCTCAGCACAGAGCATGC | + |
|
Preference number: 4 (lower is better) Translates to: ISLLSFTSNFLVFPVRRRYNDIA*SQHRAC Trigger: GCATGCTCTGTGCTGAGAGCATGCTATATCATTGTA...TCTGCGTCTTACAGGGAACACCAAAAAGTTGCTAGTAAATGATAGTAGAGAAAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
||
| CDS-3UTR TCA 90 bp | ATTCACACCTTGCTCCAACCTGAATTACAAACCCAGAACTTACAAATATGGATAATCTCATCCTCATCTTaGAAGCTGACATGTCTGATT | + |
|
Preference number: 4 (lower is better) Translates to: IHTLLQPELQTQNLQIWIISSSS*KLTCLI Trigger: AATCAGACATGTCAGCTTTCAAGATGAGGATGAGAT...TATCCATATTTGTAAGTTCTGGGTTTGTAATTCAGGTTGGAGCAAGGTGTGAAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
||
| CDS-3UTR CCA 90 bp | GTAAGGCATTTACCTAACAAAGGATTTAGTTCCAAAATGCAAGAATATCCTTGCGCAAGTAGACTCTTCTaGCATTCAGATCTTCAAAGG | + |
|
Preference number: 4 (lower is better) Translates to: VRHLPNKGFSSKMQEYPCASRLF*HSDLQR Trigger: CCTTTGAAGATCTGAATGCCAGAAGAGTCTACTTGC...GCAAGGATATTCTTGCATTTTGGAACTAAATCCTTTGTTAGGTAAATGCCTTAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110901.2 |
||
| CDS-3UTR CCA 90 bp | ATTTCTCTACTATCATTTACTAGCAACTTTTTGGTGTTCCCTGTAAGACGCAGAGTCTTGTTTAGAAAATaGAACACTGGAGTCAGTATC | + |
|
Preference number: 4 (lower is better) Translates to: ISLLSFTSNFLVFPVRRRVLFRK*NTGVSI Trigger: GATACTGACTCCAGTGTTCCATTTTCTAAACAAGAC...TCTGCGTCTTACAGGGAACACCAAAAAGTTGCTAGTAAATGATAGTAGAGAAAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
||
| CDS-3UTR CAA 90 bp | CAGCGCTGGTCTAAAGCCATCCAGCAGGTGGCACTGCAGCTCCGCAAGCACTGCGTAAGGCCAAACTTCTaGTCATCGATCTTCCAGTGG | + |
|
Preference number: 5 (lower is better) Translates to: QRWSKAIQQVALQLRKHCVRPNF*SSIFQW Trigger: CCACTGGAAGATCGATGACAAGAAGTTTGGCCTTAC...GCAGTGCTTGCGGAGCTGCAGTGCCACCTGCTGGATGGCTTTAGACCAGCGCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
||
| CDS-3UTR CAA 90 bp | AGCCCACAGCCCTCCTTTACTGGAGACACCATTTCCATCTTTCAGCGCTGGTCTTCCAAAACCACCATTTaGTCTCTGAGTCTCTCTCCA | + |
|
Preference number: 5 (lower is better) Translates to: SPQPSFTGDTISIFQRWSSKTTI*SLSLSP Trigger: TGGAGAGAGACTCAGAGACAAAATGGTGGTTTTGGA...AGACCAGCGCTGAAAGATGGAAATGGTGTCTCCAGTAAAGGAGGGCTGTGGGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
||
| CDS TCA 90 bp | GATGGCACATTCTCAAAGGGACGTAGCAGCACATACATGGTACAATaGAAGACAGAGCTACCAGGGCTAACCACCTTAGGCAGAACTTGT | + |
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Preference number: 5 (lower is better) Translates to: DGTFSKGRSSTYMVQ*KTELPGLTTLGRTC Trigger: ACAAGTTCTGCCTAAGGTGGTTAGCCCTGGTAGCTCTGTCTTTCATTGTACCATGTATGTGCTGCTACGTCCCTTTGAGAATGTGCCATC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
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| CDS-3UTR CAA 90 bp | TCCATATTGCTTGCCAACAGCTTCCACAAATCCAAGTTAGCTAATTCCTGGAGACTGGCTGACTTGGCTTaGCAAGTAGACTCTTCTGGC | + |
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Preference number: 5 (lower is better) Translates to: SILLANSFHKSKLANSWRLADLA*QVDSSG Trigger: GCCAGAAGAGTCTACTTGCAAAGCCAAGTCAGCCAG...TCTCCAGGAATTAGCTAACTTGGATTTGTGGAAGCTGTTGGCAAGCAATATGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
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| CDS-3UTR CAA 90 bp | AAAGCCAACACAAGCCGAAGTGTGACACATAAAACTGACTGCACAGAAATGACACACCTTAGGCAGAACTaGTCATCGCTAGTGTCACAC | + |
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Preference number: 5 (lower is better) Translates to: KANTSRSVTHKTDCTEMTHLRQN*SSLVSH Trigger: GTGTGACACTAGCGATGACAAGTTCTGCCTAAGGTG...TGTCATTTCTGTGCAGTCAGTTTTATGTGTCACACTTCGGCTTGTGTTGGCTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
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| CDS TCA 90 bp | CTATATAAGCTATGCATGGAAACAGTATTCGTCTTCTCACCTGGCTaGCTTGGCTTTGCAAGTAGACTCTTCTGGCATTCAGATCTTCAA | + |
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Preference number: 5 (lower is better) Translates to: LYKLCMETVFVFSPG*LGFASRLFWHSDLQ Trigger: TTGAAGATCTGAATGCCAGAAGAGTCTACTTGCAAAGCCAAGTCAGCCAGGTGAGAAGACGAATACTGTTTCCATGCATAGCTTATATAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110901.2 |
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| CDS-3UTR CAA 90 bp | ATGCAAGAATATCCTTGCAAATCAGTAAGAGAAGACCAGACAACTCAGTATTGGGTAAGGCCAAACTTCTaGTCATCGATCTTCCAGTGG | + |
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Preference number: 5 (lower is better) Translates to: MQEYPCKSVREDQTTQYWVRPNF*SSIFQW Trigger: CCACTGGAAGATCGATGACAAGAAGTTTGGCCTTAC...CCAATACTGAGTTGTCTGGTCTTCTCTTACTGATTTGCAAGGATATTCTTGCAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110901.2 |
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| CDS-3UTR CAA 90 bp | AACACACTAGATAAAATTCCAAGGTGTTTTCCACACTATGAACATTCAATGACCCTGGCTGACTTGGCTTaGCAAGTAGACTCTTCTGGC | + |
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Preference number: 5 (lower is better) Translates to: NTLDKIPRCFPHYEHSMTLADLA*QVDSSG Trigger: GCCAGAAGAGTCTACTTGCAAAGCCAAGTCAGCCAG...GGTCATTGAATGTTCATAGTGTGGAAAACACCTTGGAATTTTATCTAGTGTGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110901.2 |
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| CDS-3UTR CAA 90 bp | TCCATATTGCTTGCCAACAGCTTCCACAAATCCAAGTTAGCTAATTCCTGGAGAAATCTCATCCTCATCTaGAAAGCTGACATGTCTGAT | + |
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Preference number: 5 (lower is better) Translates to: SILLANSFHKSKLANSWRNLILI*KADMSD Trigger: ATCAGACATGTCAGCTTTCAAGATGAGGATGAGATT...TCTCCAGGAATTAGCTAACTTGGATTTGTGGAAGCTGTTGGCAAGCAATATGGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
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| CDS-3UTR CAA 90 bp | AAAGCCAACACAAGCCGAAGTGTGACACATAAAACTGACTGCACAGAAATGACAACATTCCTTAGATATTaGCCGCTGTACATATTCCAT | + |
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Preference number: 5 (lower is better) Translates to: KANTSRSVTHKTDCTEMTTFLRY*PLYIFH Trigger: ATGGAATATGTACAGCGGCAAATATCTAAGGAATGT...TGTCATTTCTGTGCAGTCAGTTTTATGTGTCACACTTCGGCTTGTGTTGGCTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
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| CDS-3UTR CAA 90 bp | GTAAGGCATTTACCTAACAAAGGATTTAGTTCCAAAATGCAAGAATATCCTTGCTCCAAAACCACCATTTaGTCTCTGAGTCTCTCTCCA | + |
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Preference number: 5 (lower is better) Translates to: VRHLPNKGFSSKMQEYPCSKTTI*SLSLSP Trigger: TGGAGAGAGACTCAGAGACAAAATGGTGGTTTTGGA...GCAAGGATATTCTTGCATTTTGGAACTAAATCCTTTGTTAGGTAAATGCCTTAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110901.2 |
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| CDS TCA 90 bp | ATTAAGATATCTCGAGGATTTATTCTAACAATCTCATCCTCATCTTaGAAGCTGACATGTCTGATTGACTTCAAAGGGACCCTAGTTTGG | + |
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Preference number: 5 (lower is better) Translates to: IKISRGFILTISSSS*KLTCLIDFKGTLVW Trigger: CCAAACTAGGGTCCCTTTGAAGTCAATCAGACATGTCAGCTTTCAAGATGAGGATGAGATTGTTAGAATAAATCCTCGAGATATCTTAAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
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| CDS-3UTR CAA 90 bp | ATTTCTCTACTATCATTTACTAGCAACTTTTTGGTGTTCCCTGTAAGACGCAGAGGTAACAACTGTCTCTaGCTGGAAAAAGTGATCTTT | + |
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Preference number: 5 (lower is better) Translates to: ISLLSFTSNFLVFPVRRRGNNCL*LEKVIF Trigger: AAAGATCACTTTTTCCAGCAAGAGACAGTTGTTACC...TCTGCGTCTTACAGGGAACACCAAAAAGTTGCTAGTAAATGATAGTAGAGAAAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
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| CDS-3UTR CAA 90 bp | ATTTCTCTACTATCATTTACTAGCAACTTTTTGGTGTTCCCTGTAAGACGCAGAGAGCATGCAGCTAACTaGATATATGCATCTTTTAAC | + |
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Preference number: 5 (lower is better) Translates to: ISLLSFTSNFLVFPVRRREHAAN*IYASFN Trigger: GTTAAAAGATGCATATATCAAGTTAGCTGCATGCTC...TCTGCGTCTTACAGGGAACACCAAAAAGTTGCTAGTAAATGATAGTAGAGAAAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
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| CDS GCA 72 bp | CCCAGCAGCCTTATGTTTCCCACCACAGCACCCGCATaGCTCACCACAGCGATGGCACATTCTCAAAGGGAC | + |
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Preference number: 6 (lower is better) Translates to: PSSLMFPTTAPA*LTTAMAHSQRD Trigger: GTCCCTTTGAGAATGTGCCATCGCTGTGGTGAGGCATGCGGGTGCTGTGGTGGGAAACATAAGGCTGCTGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
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| CDS CAA 72 bp | GACAGAGCTACCAGGGCTAACCACCTTAGGCAGAACTaGTCATCGCTAGTGTCACACGAACAAGGATCAGAA | + |
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Preference number: 6 (lower is better) Translates to: DRATRANHLRQN*SSLVSHEQGSE Trigger: TTCTGATCCTTGTTCGTGTGACACTAGCGATGACAAGTTCTGCCTAAGGTGGTTAGCCCTGGTAGCTCTGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
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| CDS TCA 72 bp | TTCTCAAAGGGACGTAGCAGCACATACATGGTACAATaGAAGACAGAGCTACCAGGGCTAACCACCTTAGGC | + |
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Preference number: 6 (lower is better) Translates to: FSKGRSSTYMVQ*KTELPGLTTLG Trigger: GCCTAAGGTGGTTAGCCCTGGTAGCTCTGTCTTTCATTGTACCATGTATGTGCTGCTACGTCCCTTTGAGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
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| CDS CAA 72 bp | GCATGGAAACAGTATTCGTCTTCTCACCTGGCTGACTaGGCTTTGCAAGTAGACTCTTCTGGCATTCAGATC | + |
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Preference number: 6 (lower is better) Translates to: AWKQYSSSHLAD*ALQVDSSGIQI Trigger: GATCTGAATGCCAGAAGAGTCTACTTGCAAAGCCAAGTCAGCCAGGTGAGAAGACGAATACTGTTTCCATGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110901.2 |
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| CDS TCA 72 bp | CTATGCATGGAAACAGTATTCGTCTTCTCACCTGGCTaGCTTGGCTTTGCAAGTAGACTCTTCTGGCATTCA | + |
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Preference number: 6 (lower is better) Translates to: LCMETVFVFSPG*LGFASRLFWHS Trigger: TGAATGCCAGAAGAGTCTACTTGCAAAGCCAAGTCAGCCAGGTGAGAAGACGAATACTGTTTCCATGCATAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110901.2 |
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| CDS CAA 72 bp | GCCTTGCTGACTGAATGGTATCTGGCTGACTTGGCTTaGCAAGTAGACTCTTCTGGCATTCAGATCTTCAAA | + |
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Preference number: 6 (lower is better) Translates to: ALLTEWYLADLA*QVDSSGIQIFK Trigger: TTTGAAGATCTGAATGCCAGAAGAGTCTACTTGCAAAGCCAAGTCAGCCAGATACCATTCAGTCAGCAAGGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
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| CDS CAA 90 bp | ATAAGCTATGCATGGAAACAGTATTCGTCTTCTCACCTGGCTGACTaGGCTTTGCAAGTAGACTCTTCTGGCATTCAGATCTTCAAAGGG | + |
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Preference number: 6 (lower is better) Translates to: ISYAWKQYSSSHLAD*ALQVDSSGIQIFKG Trigger: CCCTTTGAAGATCTGAATGCCAGAAGAGTCTACTTGCAAAGCCAAGTCAGCCAGGTGAGAAGACGAATACTGTTTCCATGCATAGCTTAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110901.2 |
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| CDS TCA 72 bp | GGTTCACTGGTAACAACTGTCTCTTGCTGGAAAAAGTaGTCTTTCACTAGGGAACGGGAAGTGTCTTCTTCA | + |
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Preference number: 6 (lower is better) Translates to: GSLVTTVSCWKK*SFTREREVSSS Trigger: TGAAGAAGACACTTCCCGTTCCCTAGTGAAAGATCACTTTTTCCAGCAAGAGACAGTTGTTACCAGTGAACC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028829.13 ENSMUST00000110901.2 |
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| CDS CCA 72 bp | ATATCGTTTCGTAACATGGAAAAGAGCGGAGGGCCTTaGTGTTCTGTAGCACACCCAGCTTTTCTATATAAG | + |
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Preference number: 6 (lower is better) Translates to: ISFRNMEKSGGP*CSVAHPAFLYK Trigger: CTTATATAGAAAAGCTGGGTGTGCTACAGAACACCAAGGCCCTCCGCTCTTTTCCATGTTACGAAACGATAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110901.2 |
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| CDS CAA 72 bp | AAACAGTATTCGTCTTCTCACCTGGCTGACTTGGCTTaGCAAGTAGACTCTTCTGGCATTCAGATCTTCAAA | + |
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Preference number: 6 (lower is better) Translates to: KQYSSSHLADLA*QVDSSGIQIFK Trigger: TTTGAAGATCTGAATGCCAGAAGAGTCTACTTGCAAAGCCAAGTCAGCCAGGTGAGAAGACGAATACTGTTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110901.2 |
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| CDS TCA 72 bp | TCTCGAGGATTTATTCTAACAATCTCATCCTCATCTTaGAAGCTGACATGTCTGATTGACTTCAAAGGGACC | + |
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Preference number: 6 (lower is better) Translates to: SRGFILTISSSS*KLTCLIDFKGT Trigger: GGTCCCTTTGAAGTCAATCAGACATGTCAGCTTTCAAGATGAGGATGAGATTGTTAGAATAAATCCTCGAGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028829.13 |
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