RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SPPL2B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000035206

Ensembl transcript IDs: ENSMUST00000035597.10, ENSMUST00000218789.2, ENSMUST00000219614.2, ENSMUST00000219951.2, ENSMUST00000220091.2

Found 270 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CACCCTGGTGGGTGGCAGCTGTCCCTGTCCCCTGCAGGTCCCAGGTaGTCAGCATCTGTGTGGCGTGGAAGGCGGCGAGGGCCCAGCTCT +
Preference number: 1 (lower is better)
Translates to: HPGGWQLSLSPAGPR*SASVWRGRRRGPSS
Trigger: AGAGCTGGGCCCTCGCCGCCTTCCACGCCACACAGATGCTGACCACCTGGGACCTGCAGGGGACAGGGACAGCTGCCACCCACCAGGGTG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR TCA 90 bp GGCCGAGCACTGTGGGCAGCGGCCTTGCATGGAGTGGGCAGCAGATaGAGCTCACGGCCTGGTGCAAAGCAGAGCTGGGCGCGGGGTGCA +
Preference number: 1 (lower is better)
Translates to: GRALWAAALHGVGSR*SSRPGAKQSWARGA
Trigger: TGCACCCCGCGCCCAGCTCTGCTTTGCACCAGGCCGTGAGCTTCATCTGCTGCCCACTCCATGCAAGGCCGCTGCCCACAGTGCTCGGCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR GCA 90 bp AGAGCAGGTCTGTCACCCTGGTGGGTGGCAGCTGTCCCTGTCCCCTaGAGGTCCCAGGTGGTCAGCATCTGTGTGGCGTGGAAGGCGGCG +
Preference number: 1 (lower is better)
Translates to: RAGLSPWWVAAVPVP*RSQVVSICVAWKAA
Trigger: CGCCGCCTTCCACGCCACACAGATGCTGACCACCTGGGACCTGCAGGGGACAGGGACAGCTGCCACCCACCAGGGTGACAGACCTGCTCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR CCA 90 bp GTCCCTGTCCCCTGCAGGTCCCAGGTGGTCAGCATCTGTGTGGCGTaGAAGGCGGCGAGGGCCCAGCTCTCACCCCTCTTCTTCCTAGGC +
Preference number: 1 (lower is better)
Translates to: VPVPCRSQVVSICVA*KAARAQLSPLFFLG
Trigger: GCCTAGGAAGAAGAGGGGTGAGAGCTGGGCCCTCGCCGCCTTCCACGCCACACAGATGCTGACCACCTGGGACCTGCAGGGGACAGGGAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR CCA 90 bp CAGCTGTCCCTGTCCCCTGCAGGTCCCAGGTGGTCAGCATCTGTGTaGCGTGGAAGGCGGCGAGGGCCCAGCTCTCACCCCTCTTCTTCC +
Preference number: 1 (lower is better)
Translates to: QLSLSPAGPRWSASV*RGRRRGPSSHPSSS
Trigger: GGAAGAAGAGGGGTGAGAGCTGGGCCCTCGCCGCCTTCCACGCCACACAGATGCTGACCACCTGGGACCTGCAGGGGACAGGGACAGCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR GCA 90 bp TGCCCGTCCAGAAGGCACCCAGCTCCCGGCGCCACAGAGCCACGGTaGAGCTGGTCAGCAGTGTGCAAGGGACCAGGTAGAGTAGTGCAG +
Preference number: 1 (lower is better)
Translates to: CPSRRHPAPGATEPR*SWSAVCKGPGRVVQ
Trigger: CTGCACTACTCTACCTGGTCCCTTGCACACTGCTGACCAGCTGCACCGTGGCTCTGTGGCGCCGGGAGCTGGGTGCCTTCTGGACGGGCA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220091.2
3UTR GCA 90 bp CCGTGGCTCCCGAGTTCTATCCCAGAGTGTGGGGACTGTGGCCTCTaGCTCGGTGACATGCAGCATGTGTGCTGGGCTCCCTGCAGGCAG +
Preference number: 1 (lower is better)
Translates to: PWLPSSIPECGDCGL*LGDMQHVCWAPCRQ
Trigger: CTGCCTGCAGGGAGCCCAGCACACATGCTGCATGTCACCGAGGCAGAGGCCACAGTCCCCACACTCTGGGATAGAACTCGGGAGCCACGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR CCA 90 bp GGCAGCGGCCTTGCATGGAGTGGGCAGCAGATGAAGCTCACGGCCTaGTGCAAAGCAGAGCTGGGCGCGGGGTGCAGCTGGGAGAATCTA +
Preference number: 1 (lower is better)
Translates to: GSGLAWSGQQMKLTA*CKAELGAGCSWENL
Trigger: TAGATTCTCCCAGCTGCACCCCGCGCCCAGCTCTGCTTTGCACCAGGCCGTGAGCTTCATCTGCTGCCCACTCCATGCAAGGCCGCTGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR CCA 90 bp AAGCGAGGGACCCAGGCCAGGGGCTCAGTGGGAGCACAAGGAGGCTaGACTCAACTTGACCTGGTGGCCTTAGGGGGCTATCGCCGCACT +
Preference number: 1 (lower is better)
Translates to: KRGTQARGSVGAQGG*TQLDLVALGGYRRT
Trigger: AGTGCGGCGATAGCCCCCTAAGGCCACCAGGTCAAGTTGAGTCCAGCCTCCTTGTGCTCCCACTGAGCCCCTGGCCTGGGTCCCTCGCTT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000220091.2
3UTR CCA 90 bp GGTTGTCAGGATCCTTGGCAGGGTCTGCGGCTCCGGCCTCCTCAGTaGACAGGGGGCTCTTGGCTAGCTCTTCACTTGGAGGCTGCTCGG +
Preference number: 1 (lower is better)
Translates to: GCQDPWQGLRLRPPQ*TGGSWLALHLEAAR
Trigger: CCGAGCAGCCTCCAAGTGAAGAGCTAGCCAAGAGCCCCCTGTCCACTGAGGAGGCCGGAGCCGCAGACCCTGCCAAGGATCCTGACAACC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR TCA 90 bp GGCTGGCCCTGGGCAGATCCCTGCCTATCCCAGCAGCTGCCTCTGTaGCACCAAGGAAGTCCCAGAGCACAGAGCCCCCTGGAAGACGTA +
Preference number: 1 (lower is better)
Translates to: GWPWADPCLSQQLPL*HQGSPRAQSPLEDV
Trigger: TACGTCTTCCAGGGGGCTCTGTGCTCTGGGACTTCCTTGGTGTCACAGAGGCAGCTGCTGGGATAGGCAGGGATCTGCCCAGGGCCAGCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR GCA 90 bp GCTGGGGACATGGACCCATCCACACGTGGCCAGCTCCCACCAGGCTaGACAGCGCAGGACCTGGAGCTGGAGCCATTTACTGGCTTAGAG +
Preference number: 1 (lower is better)
Translates to: AGDMDPSTRGQLPPG*TAQDLELEPFTGLE
Trigger: CTCTAAGCCAGTAAATGGCTCCAGCTCCAGGTCCTGCGCTGTGCAGCCTGGTGGGAGCTGGCCACGTGTGGATGGGTCCATGTCCCCAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR GCA 90 bp GCTATCGCCGCACTCATAGCAAACTGGTATTCACCGCAAAACCGCTaGCCGTCCAGAAGGCACCCAGCTCCCGGCGCCACAGAGCCACGG +
Preference number: 1 (lower is better)
Translates to: AIAALIANWYSPQNR*PSRRHPAPGATEPR
Trigger: CCGTGGCTCTGTGGCGCCGGGAGCTGGGTGCCTTCTGGACGGGCAGCGGTTTTGCGGTGAATACCAGTTTGCTATGAGTGCGGCGATAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220091.2
3UTR GCA 90 bp TCCTCAGTGGACAGGGGGCTCTTGGCTAGCTCTTCACTTGGAGGCTaGTCGGAGAGGGAGGAACCCACAGCCTTCGGAGGCACAGGTCCC +
Preference number: 1 (lower is better)
Translates to: SSVDRGLLASSSLGG*SEREEPTAFGGTGP
Trigger: GGGACCTGTGCCTCCGAAGGCTGTGGGTTCCTCCCTCTCCGAGCAGCCTCCAAGTGAAGAGCTAGCCAAGAGCCCCCTGTCCACTGAGGA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR GCA 90 bp TGGGACCAGTCAGAGCAGACCCCAACGGGGCAGAACCCACACAGGTaGAGGACACTTAGAGCAGGAGGCATTCAGCAACCACCCAGAGCC +
Preference number: 1 (lower is better)
Translates to: WDQSEQTPTGQNPHR*RTLRAGGIQQPPRA
Trigger: GGCTCTGGGTGGTTGCTGAATGCCTCCTGCTCTAAGTGTCCTGCACCTGTGTGGGTTCTGCCCCGTTGGGGTCTGCTCTGACTGGTCCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR CCA 90 bp CCCACCAGGCTGCACAGCGCAGGACCTGGAGCTGGAGCCATTTACTaGCTTAGAGCAGTGGCCCACGCTCTCAACTCCATCTTGGCATGG +
Preference number: 1 (lower is better)
Translates to: PTRLHSAGPGAGAIY*LRAVAHALNSILAW
Trigger: CCATGCCAAGATGGAGTTGAGAGCGTGGGCCACTGCTCTAAGCCAGTAAATGGCTCCAGCTCCAGGTCCTGCGCTGTGCAGCCTGGTGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR GCA 90 bp TGTGGCCTCTGCCTCGGTGACATGCAGCATGTGTGCTGGGCTCCCTaGAGGCAGATCTGTCATGGAGTCCAGAGCCTGGTTGGTGAGGTA +
Preference number: 1 (lower is better)
Translates to: CGLCLGDMQHVCWAP*RQICHGVQSLVGEV
Trigger: TACCTCACCAACCAGGCTCTGGACTCCATGACAGATCTGCCTGCAGGGAGCCCAGCACACATGCTGCATGTCACCGAGGCAGAGGCCACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR GCA 90 bp GTTCTATCCCAGAGTGTGGGGACTGTGGCCTCTGCCTCGGTGACATaGAGCATGTGTGCTGGGCTCCCTGCAGGCAGATCTGTCATGGAG +
Preference number: 1 (lower is better)
Translates to: VLSQSVGTVASASVT*SMCAGLPAGRSVME
Trigger: CTCCATGACAGATCTGCCTGCAGGGAGCCCAGCACACATGCTGCATGTCACCGAGGCAGAGGCCACAGTCCCCACACTCTGGGATAGAAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR GCA 90 bp ATCCTCTTCAGCTGCTACAGGGCGGTGGGGGTGGGGGCTCAGCAATaGGGCAGGAGTGTTCAAAGCCTTAGGTCACACCAGAGAGTTCCC +
Preference number: 1 (lower is better)
Translates to: ILFSCYRAVGVGAQQ*GRSVQSLRSHQRVP
Trigger: GGGAACTCTCTGGTGTGACCTAAGGCTTTGAACACTCCTGCCGCATTGCTGAGCCCCCACCCCCACCGCCCTGTAGCAGCTGAAGAGGAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR GCA 90 bp TCAGCACCCAGGGCAGCAAGTGCTCTCCATCTCACGCCTCCCCAGTaGTCCTCTGAGCAATCCCACTCATCAGTGAAATCCTGTGGGGAG +
Preference number: 1 (lower is better)
Translates to: SAPRAASALHLTPPQ*SSEQSHSSVKSCGE
Trigger: CTCCCCACAGGATTTCACTGATGAGTGGGATTGCTCAGAGGAGCACTGGGGAGGCGTGAGATGGAGAGCACTTGCTGCCCTGGGTGCTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR CCA 90 bp TCAATGTACCCTCCATCCTCTTCAGCTGCTACAGGGCGGTGGGGGTaGGGGCTCAGCAATGCGGCAGGAGTGTTCAAAGCCTTAGGTCAC +
Preference number: 1 (lower is better)
Translates to: SMYPPSSSAATGRWG*GLSNAAGVFKALGH
Trigger: GTGACCTAAGGCTTTGAACACTCCTGCCGCATTGCTGAGCCCCCACCCCCACCGCCCTGTAGCAGCTGAAGAGGATGGAGGGTACATTGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR CCA 90 bp AGCCCTTCAATGTACCCTCCATCCTCTTCAGCTGCTACAGGGCGGTaGGGGTGGGGGCTCAGCAATGCGGCAGGAGTGTTCAAAGCCTTA +
Preference number: 1 (lower is better)
Translates to: SPSMYPPSSSAATGR*GWGLSNAAGVFKAL
Trigger: TAAGGCTTTGAACACTCCTGCCGCATTGCTGAGCCCCCACCCCCACCGCCCTGTAGCAGCTGAAGAGGATGGAGGGTACATTGAAGGGCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR CCA 90 bp AGCTGCCTCTGTGACACCAAGGAAGTCCCAGAGCACAGAGCCCCCTaGAAGACGTACCCAAGAAGCAAGGCTCATCTTGGGGAGCCACGT +
Preference number: 1 (lower is better)
Translates to: SCLCDTKEVPEHRAP*KTYPRSKAHLGEPR
Trigger: ACGTGGCTCCCCAAGATGAGCCTTGCTTCTTGGGTACGTCTTCCAGGGGGCTCTGTGCTCTGGGACTTCCTTGGTGTCACAGAGGCAGCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR CCA 90 bp GACTACCCAAGAGGTGAAAGGACTGCTTGGACACCCAATATAAAATaGCTTGTCAAATCCAATGGCAGAAGCAGGTGGCTAGGCCCCAGC +
Preference number: 1 (lower is better)
Translates to: DYPRGERTAWTPNIK*LVKSNGRSRWLGPS
Trigger: GCTGGGGCCTAGCCACCTGCTTCTGCCATTGGATTTGACAAGCCATTTTATATTGGGTGTCCAAGCAGTCCTTTCACCTCTTGGGTAGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR CCA 90 bp GAGCATCGGCCGAGCACTGTGGGCAGCGGCCTTGCATGGAGTGGGCAGCAGATGGGTGCAAAGCAGAGCTaGGCGCGGGGTGCAGCTGGG +
Preference number: 2 (lower is better)
Translates to: EHRPSTVGSGLAWSGQQMGAKQS*ARGAAG
Trigger: CCCAGCTGCACCCCGCGCCCAGCTCTGCTTTGCACC...CATCTGCTGCCCACTCCATGCAAGGCCGCTGCCCACAGTGCTCGGCCGATGCTC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR CCA 90 bp GAGGCATTCAGCAACCACCCAGAGCCAGAAACGCCCAGCCCCCACCACCCAGCGACAGGGCGGTGGGGGTaGGGGCTCAGCAATGCGGCA +
Preference number: 2 (lower is better)
Translates to: EAFSNHPEPETPSPHHPATGRWG*GLSNAA
Trigger: TGCCGCATTGCTGAGCCCCCACCCCCACCGCCCTGT...CGCTGGGTGGTGGGGGCTGGGCGTTTCTGGCTCTGGGTGGTTGCTGAATGCCTC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR CCA 90 bp TGTGGAGGGAGGCGCGGCCGTAGGAGCATCTGCAGGGTGAGCATCGGCCGAGCATCCGTGAGCACAGGCTaGCCCTGGGCAGATCCCTGC +
Preference number: 2 (lower is better)
Translates to: CGGRRGRRSICRVSIGRASVSTG*PWADPC
Trigger: GCAGGGATCTGCCCAGGGCCAGCCTGTGCTCACGGA...TGCTCGGCCGATGCTCACCCTGCAGATGCTCCTACGGCCGCGCCTCCCTCCACA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR TCA 90 bp GGACTGGCCACAGGGTTGTCAGGATCCTTGGCAGGGTCTGCGGCTCCGGCCTCCGGAGTGGGCAGCAGATaGAGCTCACGGCCTGGTGCA +
Preference number: 2 (lower is better)
Translates to: GLATGLSGSLAGSAAPASGVGSR*SSRPGA
Trigger: TGCACCAGGCCGTGAGCTTCATCTGCTGCCCACTCC...GGAGGCCGGAGCCGCAGACCCTGCCAAGGATCCTGACAACCCTGTGGCCAGTCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR CCA 90 bp CAGCGGCCTTGCATGGAGTGGGCAGCAGATGAAGCTCACGGCCTGGTGCAAAGCGGTGCAAAGCAGAGCTaGGCGCGGGGTGCAGCTGGG +
Preference number: 2 (lower is better)
Translates to: QRPCMEWAADEAHGLVQSGAKQS*ARGAAG
Trigger: CCCAGCTGCACCCCGCGCCCAGCTCTGCTTTGCACC...GCTTTGCACCAGGCCGTGAGCTTCATCTGCTGCCCACTCCATGCAAGGCCGCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR CAA 90 bp CTCCGGCCTCCTCAGTGGACAGGGGGCTCTTGGCTAGCTCTTCACTaGGAGGCTGCTCGGAGAGGGAGGAACCCACAGCCTTCGGAGGCA +
Preference number: 2 (lower is better)
Translates to: LRPPQWTGGSWLALH*EAARRGRNPQPSEA
Trigger: TGCCTCCGAAGGCTGTGGGTTCCTCCCTCTCCGAGCAGCCTCCAAGTGAAGAGCTAGCCAAGAGCCCCCTGTCCACTGAGGAGGCCGGAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR CCA 90 bp GAGCACTGTGGGCAGCGGCCTTGCATGGAGTGGGCAGCAGATGAAGCTCACGGCGGTCTGTCACCCTGGTaGGTGGCAGCTGTCCCTGTC +
Preference number: 2 (lower is better)
Translates to: EHCGQRPCMEWAADEAHGGLSPW*VAAVPV
Trigger: GACAGGGACAGCTGCCACCCACCAGGGTGACAGACC...GCCGTGAGCTTCATCTGCTGCCCACTCCATGCAAGGCCGCTGCCCACAGTGCTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR CCA 90 bp ACTGTGGGCAGCGGCCTTGCATGGAGTGGGCAGCAGATGAAGCTCACGGCCTGGGCAGGTCTGTCACCCTaGTGGGTGGCAGCTGTCCCT +
Preference number: 2 (lower is better)
Translates to: TVGSGLAWSGQQMKLTAWAGLSP*WVAAVP
Trigger: AGGGACAGCTGCCACCCACCAGGGTGACAGACCTGC...CCAGGCCGTGAGCTTCATCTGCTGCCCACTCCATGCAAGGCCGCTGCCCACAGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR CCA 90 bp TGGACTTGCTGGGGACATGGACCCATCCACACGTGGCCAGCTCCCACCAGGCTGTTGTTGGGGTTGCTCTaGCCCCAGAGCCCAGCCCTG +
Preference number: 2 (lower is better)
Translates to: WTCWGHGPIHTWPAPTRLLLGLL*PQSPAL
Trigger: CAGGGCTGGGCTCTGGGGCCAGAGCAACCCCAACAA...CAGCCTGGTGGGAGCTGGCCACGTGTGGATGGGTCCATGTCCCCAGCAAGTCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR CCA 90 bp CAGCGGCCTTGCATGGAGTGGGCAGCAGATGAAGCTCACGGCCTGGTGCAAAGCGGACCCATCCACACGTaGCCAGCTCCCACCAGGCTG +
Preference number: 2 (lower is better)
Translates to: QRPCMEWAADEAHGLVQSGPIHT*PAPTRL
Trigger: CAGCCTGGTGGGAGCTGGCCACGTGTGGATGGGTCC...GCTTTGCACCAGGCCGTGAGCTTCATCTGCTGCCCACTCCATGCAAGGCCGCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR CCA 90 bp GGCTCCCGAGTTCTATCCCAGAGTGTGGGGACTGTGGCCTCTGCCTCGGTGACAGGACCCATCCACACGTaGCCAGCTCCCACCAGGCTG +
Preference number: 2 (lower is better)
Translates to: GSRVLSQSVGTVASASVTGPIHT*PAPTRL
Trigger: CAGCCTGGTGGGAGCTGGCCACGTGTGGATGGGTCC...TGTCACCGAGGCAGAGGCCACAGTCCCCACACTCTGGGATAGAACTCGGGAGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR CCA 90 bp CTGCACAGCGCAGGACCTGGAGCTGGAGCCATTTACTGGCTTAGAGCAGTGGCCACAGGGCGGTGGGGGTaGGGGCTCAGCAATGCGGCA +
Preference number: 2 (lower is better)
Translates to: LHSAGPGAGAIYWLRAVATGRWG*GLSNAA
Trigger: TGCCGCATTGCTGAGCCCCCACCCCCACCGCCCTGT...GGCCACTGCTCTAAGCCAGTAAATGGCTCCAGCTCCAGGTCCTGCGCTGTGCAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR CCA 90 bp CCCACAGACAGGCCCCTCGAGGCTGCTCCCAACATAGGAACCTGCTTGTTGGGGAGCACAGGCTGGCCCTaGGCAGATCCCTGCCTATCC +
Preference number: 2 (lower is better)
Translates to: PTDRPLEAAPNIGTCLLGSTGWP*ADPCLS
Trigger: GGATAGGCAGGGATCTGCCCAGGGCCAGCCTGTGCT...CCCCAACAAGCAGGTTCCTATGTTGGGAGCAGCCTCGAGGGGCCTGTCTGTGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR CCA 90 bp CCCACAGACAGGCCCCTCGAGGCTGCTCCCAACATAGGAACCTGCTTGTTGGGGCTCCGGCCTCCTCAGTaGACAGGGGGCTCTTGGCTA +
Preference number: 2 (lower is better)
Translates to: PTDRPLEAAPNIGTCLLGLRPPQ*TGGSWL
Trigger: TAGCCAAGAGCCCCCTGTCCACTGAGGAGGCCGGAG...CCCCAACAAGCAGGTTCCTATGTTGGGAGCAGCCTCGAGGGGCCTGTCTGTGGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR TCA 90 bp CAGAGCCCCCTGGAAGACGTACCCAAGAAGCAAGGCTCATCTTGGGGAGCCACGGGAGTGGGCAGCAGATaGAGCTCACGGCCTGGTGCA +
Preference number: 2 (lower is better)
Translates to: QSPLEDVPKKQGSSWGATGVGSR*SSRPGA
Trigger: TGCACCAGGCCGTGAGCTTCATCTGCTGCCCACTCC...CGTGGCTCCCCAAGATGAGCCTTGCTTCTTGGGTACGTCTTCCAGGGGGCTCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR TCA 90 bp CCAGCTGTCCCTGCTTGTCATCCTGCAGCAGACACCCTTTCCCATGCAAGTGTGAGTCCAAGCCGTCCGTaGGCACAGGCTGGCCCTGGG +
Preference number: 2 (lower is better)
Translates to: PAVPACHPAADTLSHASVSPSRP*AQAGPG
Trigger: CCCAGGGCCAGCCTGTGCTCACGGACGGCTTGGACT...CACACTTGCATGGGAAAGGGTGTCTGCTGCAGGATGACAAGCAGGGACAGCTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR GCA 90 bp CTGCACAGCGCAGGACCTGGAGCTGGAGCCATTTACTGGCTTAGAGCAGTGGCCGCCACAGAGCCACGGTaGAGCTGGTCAGCAGTGTGC +
Preference number: 2 (lower is better)
Translates to: LHSAGPGAGAIYWLRAVAATEPR*SWSAVC
Trigger: GCACACTGCTGACCAGCTGCACCGTGGCTCTGTGGC...GGCCACTGCTCTAAGCCAGTAAATGGCTCCAGCTCCAGGTCCTGCGCTGTGCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220091.2
3UTR-3UTR GCA 90 bp CCACCCAGGGCTATGCAGCTTCATCCAGGCCCAACACCACTCAGCACCCAGGGCGTGGGGGCTCAGCAATaGGGCAGGAGTGTTCAAAGC +
Preference number: 2 (lower is better)
Translates to: PPRAMQLHPGPTPLSTQGVGAQQ*GRSVQS
Trigger: GCTTTGAACACTCCTGCCGCATTGCTGAGCCCCCAC...GCCCTGGGTGCTGAGTGGTGTTGGGCCTGGATGAAGCTGCATAGCCCTGGGTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR CCA 90 bp GGCACCCACTGTCTGTGGTGGGCACTCCCCATCCCCTCACAGCCCTTCAATGTATGGTCAGCATCTGTGTaGCGTGGAAGGCGGCGAGGG +
Preference number: 2 (lower is better)
Translates to: GTHCLWWALPIPSQPFNVWSASV*RGRRRG
Trigger: CCCTCGCCGCCTTCCACGCCACACAGATGCTGACCA...TACATTGAAGGGCTGTGAGGGGATGGGGAGTGCCCACCACAGACAGTGGGTGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR CCA 90 bp GTGACACCAAGGAAGTCCCAGAGCACAGAGCCCCCTGGAAGACGTACCCAAGAAGGTGCAAAGCAGAGCTaGGCGCGGGGTGCAGCTGGG +
Preference number: 2 (lower is better)
Translates to: VTPRKSQSTEPPGRRTQEGAKQS*ARGAAG
Trigger: CCCAGCTGCACCCCGCGCCCAGCTCTGCTTTGCACC...TTCTTGGGTACGTCTTCCAGGGGGCTCTGTGCTCTGGGACTTCCTTGGTGTCAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR CCA 90 bp GGCACCCACTGTCTGTGGTGGGCACTCCCCATCCCCTCACAGCCCTTCAATGTATTGTTGGGGTTGCTCTaGCCCCAGAGCCCAGCCCTG +
Preference number: 2 (lower is better)
Translates to: GTHCLWWALPIPSQPFNVLLGLL*PQSPAL
Trigger: CAGGGCTGGGCTCTGGGGCCAGAGCAACCCCAACAA...TACATTGAAGGGCTGTGAGGGGATGGGGAGTGCCCACCACAGACAGTGGGTGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR CCA 90 bp TCCAGAAGCCACTGCTGGGGCAGAGGGCAGTGTCCTGGAAGACTTGCATGTCTGTCTCCTGAAGGGGTTTaGGCCCCGCGGGCAGAGTGC +
Preference number: 2 (lower is better)
Translates to: SRSHCWGRGQCPGRLACLSPEGV*APRAEC
Trigger: GCACTCTGCCCGCGGGGCCCAAACCCCTTCAGGAGA...CAGACATGCAAGTCTTCCAGGACACTGCCCTCTGCCCCAGCAGTGGCTTCTGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR CCA 90 bp CCACTGCTGGGGCAGAGGGCAGTGTCCTGGAAGACTTGCATGTCTGAGCTGATGGGACCCATCCACACGTaGCCAGCTCCCACCAGGCTG +
Preference number: 2 (lower is better)
Translates to: PLLGQRAVSWKTCMSELMGPIHT*PAPTRL
Trigger: CAGCCTGGTGGGAGCTGGCCACGTGTGGATGGGTCC...CATCAGCTCAGACATGCAAGTCTTCCAGGACACTGCCCTCTGCCCCAGCAGTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR CCA 90 bp GCTGTCCCTGTCCCCTGCAGGTCCCAGGTGGTCAGCATCTGTGTGGCGTGGAAGATGCAGCATGTGTGCTaGGCTCCCTGCAGGCAGATC +
Preference number: 2 (lower is better)
Translates to: AVPVPCRSQVVSICVAWKMQHVC*APCRQI
Trigger: GATCTGCCTGCAGGGAGCCCAGCACACATGCTGCAT...CTTCCACGCCACACAGATGCTGACCACCTGGGACCTGCAGGGGACAGGGACAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR CCA 90 bp CAGTCCAGAAGCCACTGCTGGGGCAGAGGGCAGTGTCCTGGAAGACTTGCATGTGCTGCTACAGGGCGGTaGGGGTGGGGGCTCAGCAAT +
Preference number: 2 (lower is better)
Translates to: QSRSHCWGRGQCPGRLACAATGR*GWGLSN
Trigger: ATTGCTGAGCCCCCACCCCCACCGCCCTGTAGCAGC...ACATGCAAGTCTTCCAGGACACTGCCCTCTGCCCCAGCAGTGGCTTCTGGACTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR CCA 90 bp CTCCGGCCTCCTCAGTGGACAGGGGGCTCTTGGCTAGCTCTTCACTTGGAGGCTACCCACTGTCTGTGGTaGGCACTCCCCATCCCCTCA +
Preference number: 2 (lower is better)
Translates to: LRPPQWTGGSWLALHLEATHCLW*ALPIPS
Trigger: TGAGGGGATGGGGAGTGCCCACCACAGACAGTGGGT...AGCCTCCAAGTGAAGAGCTAGCCAAGAGCCCCCTGTCCACTGAGGAGGCCGGAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR CCA 90 bp GCAGATGAAGCTCACGGCCTGGTGCAAAGCAGAGCTGGGCGCGGGGTGCAGCTGCTAGGCCGAAGTCTCTaGCTTCACCACAGGGATAGG +
Preference number: 2 (lower is better)
Translates to: ADEAHGLVQSRAGRGVQLLGRSL*LHHRDR
Trigger: CCTATCCCTGTGGTGAAGCCAGAGACTTCGGCCTAG...CAGCTGCACCCCGCGCCCAGCTCTGCTTTGCACCAGGCCGTGAGCTTCATCTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR TCA 90 bp GGCTCCCGAGTTCTATCCCAGAGTGTGGGGACTGTGGCCTCTGCCTCGGTGACACTGGGAGAATCTACTTaGGGCCTCAGAGGCCTGAGC +
Preference number: 2 (lower is better)
Translates to: GSRVLSQSVGTVASASVTLGEST*GLRGLS
Trigger: GCTCAGGCCTCTGAGGCCTCAAGTAGATTCTCCCAG...TGTCACCGAGGCAGAGGCCACAGTCCCCACACTCTGGGATAGAACTCGGGAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR TCA 90 bp GTGGCCCACGCTCTCAACTCCATCTTGGCATGGACTCTCCTGAAGGGGTTTGGGGGAGTGGGCAGCAGATaGAGCTCACGGCCTGGTGCA +
Preference number: 2 (lower is better)
Translates to: VAHALNSILAWTLLKGFGGVGSR*SSRPGA
Trigger: TGCACCAGGCCGTGAGCTTCATCTGCTGCCCACTCC...CCCAAACCCCTTCAGGAGAGTCCATGCCAAGATGGAGTTGAGAGCGTGGGCCAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR TCA 90 bp TTCCCATGCAAGTGTGGGTGGCCGTGGCTCCCGAGTTCTATCCCAGAGTGTGGGTGGCCTCTGCCTCGGTaGCATGCAGCATGTGTGCTG +
Preference number: 2 (lower is better)
Translates to: FPCKCGWPWLPSSIPECGWPLPR*HAACVL
Trigger: CAGCACACATGCTGCATGTCACCGAGGCAGAGGCCA...CCCACACTCTGGGATAGAACTCGGGAGCCACGGCCACCCACACTTGCATGGGAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR TCA 90 bp CTGCACAGCGCAGGACCTGGAGCTGGAGCCATTTACTGGCTTAGAGCAGTGGCCTGGCCTCTGCCTCGGTaGCATGCAGCATGTGTGCTG +
Preference number: 2 (lower is better)
Translates to: LHSAGPGAGAIYWLRAVAWPLPR*HAACVL
Trigger: CAGCACACATGCTGCATGTCACCGAGGCAGAGGCCA...GGCCACTGCTCTAAGCCAGTAAATGGCTCCAGCTCCAGGTCCTGCGCTGTGCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR TCA 90 bp AGTCCAGAAGCCACTGCTGGGGCAGAGGGCAGTGTCCTGGAAGACTTGCATGTCGCTGGCCACGCTGCATaGGGACAAGAGCCACGAAGG +
Preference number: 2 (lower is better)
Translates to: SPEATAGAEGSVLEDLHVAGHAA*GQEPRR
Trigger: CCTTCGTGGCTCTTGTCCTCATGCAGCGTGGCCAGC...GACATGCAAGTCTTCCAGGACACTGCCCTCTGCCCCAGCAGTGGCTTCTGGACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220091.2
3UTR-3UTR CCA 90 bp CATGCAGCATGTGTGCTGGGCTCCCTGCAGGCAGATCTGTCATGGAGTCCAGAGTGGTCAGCATCTGTGTaGCGTGGAAGGCGGCGAGGG +
Preference number: 2 (lower is better)
Translates to: HAACVLGSLQADLSWSPEWSASV*RGRRRG
Trigger: CCCTCGCCGCCTTCCACGCCACACAGATGCTGACCA...CTCTGGACTCCATGACAGATCTGCCTGCAGGGAGCCCAGCACACATGCTGCATG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR CCA 90 bp CAGCGGCCTTGCATGGAGTGGGCAGCAGATGAAGCTCACGGCCTGGTGCAAAGCCGGCCTTGCATGGAGTaGGCAGCAGATGAAGCTCAC +
Preference number: 2 (lower is better)
Translates to: QRPCMEWAADEAHGLVQSRPCME*AADEAH
Trigger: GTGAGCTTCATCTGCTGCCCACTCCATGCAAGGCCG...GCTTTGCACCAGGCCGTGAGCTTCATCTGCTGCCCACTCCATGCAAGGCCGCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR CCA 90 bp CCAGTCCAGAAGCCACTGCTGGGGCAGAGGGCAGTGTCCTGGAAGACTTGCATGGGCAGCGGCCTTGCATaGAGTGGGCAGCAGATGAAG +
Preference number: 2 (lower is better)
Translates to: PVQKPLLGQRAVSWKTCMGSGLA*SGQQMK
Trigger: CTTCATCTGCTGCCCACTCCATGCAAGGCCGCTGCC...CATGCAAGTCTTCCAGGACACTGCCCTCTGCCCCAGCAGTGGCTTCTGGACTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR CCA 90 bp GGCCCACGCTCTCAACTCCATCTTGGCATGGACTCTCCTGAAGGGGTTTGGGCCGGCAGCGGCCTTGCATaGAGTGGGCAGCAGATGAAG +
Preference number: 2 (lower is better)
Translates to: GPRSQLHLGMDSPEGVWAGSGLA*SGQQMK
Trigger: CTTCATCTGCTGCCCACTCCATGCAAGGCCGCTGCC...GGCCCAAACCCCTTCAGGAGAGTCCATGCCAAGATGGAGTTGAGAGCGTGGGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR CCA 90 bp GGCTCCCGAGTTCTATCCCAGAGTGTGGGGACTGTGGCCTCTGCCTCGGTGACAGCACAGCGCAGGACCTaGAGCTGGAGCCATTTACTG +
Preference number: 2 (lower is better)
Translates to: GSRVLSQSVGTVASASVTAQRRT*SWSHLL
Trigger: CAGTAAATGGCTCCAGCTCCAGGTCCTGCGCTGTGC...TGTCACCGAGGCAGAGGCCACAGTCCCCACACTCTGGGATAGAACTCGGGAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR CCA 90 bp TTTCCCATGCAAGTGTGGGTGGCCGTGGCTCCCGAGTTCTATCCCAGAGTGTGGAGCACAGGCTGGCCCTaGGCAGATCCCTGCCTATCC +
Preference number: 2 (lower is better)
Translates to: FPMQVWVAVAPEFYPRVWSTGWP*ADPCLS
Trigger: GGATAGGCAGGGATCTGCCCAGGGCCAGCCTGTGCT...CCACACTCTGGGATAGAACTCGGGAGCCACGGCCACCCACACTTGCATGGGAAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR CCA 90 bp GCCAGTCCAGAAGCCACTGCTGGGGCAGAGGGCAGTGTCCTGGAAGACTTGCATATGAAGCTCACGGCCTaGTGCAAAGCAGAGCTGGGC +
Preference number: 2 (lower is better)
Translates to: ASPEATAGAEGSVLEDLHMKLTA*CKAELG
Trigger: GCCCAGCTCTGCTTTGCACCAGGCCGTGAGCTTCAT...ATGCAAGTCTTCCAGGACACTGCCCTCTGCCCCAGCAGTGGCTTCTGGACTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR CCA 90 bp AGCATGTGTGCTGGGCTCCCTGCAGGCAGATCTGTCATGGAGTCCAGAGCCTGGATGAAGCTCACGGCCTaGTGCAAAGCAGAGCTGGGC +
Preference number: 2 (lower is better)
Translates to: SMCAGLPAGRSVMESRAWMKLTA*CKAELG
Trigger: GCCCAGCTCTGCTTTGCACCAGGCCGTGAGCTTCAT...CCAGGCTCTGGACTCCATGACAGATCTGCCTGCAGGGAGCCCAGCACACATGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR CCA 90 bp GTGCCCACAGACAGGCCCCTCGAGGCTGCTCCCAACATAGGAACCTGCTTGTTGCGGCCTTGCATGGAGTaGGCAGCAGATGAAGCTCAC +
Preference number: 2 (lower is better)
Translates to: VPTDRPLEAAPNIGTCLLRPCME*AADEAH
Trigger: GTGAGCTTCATCTGCTGCCCACTCCATGCAAGGCCG...CAACAAGCAGGTTCCTATGTTGGGAGCAGCCTCGAGGGGCCTGTCTGTGGGCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR CCA 90 bp TGCACAGCGCAGGACCTGGAGCTGGAGCCATTTACTGGCTTAGAGCAGTGGCCCGCACAGCGCAGGACCTaGAGCTGGAGCCATTTACTG +
Preference number: 2 (lower is better)
Translates to: CTAQDLELEPFTGLEQWPAQRRT*SWSHLL
Trigger: CAGTAAATGGCTCCAGCTCCAGGTCCTGCGCTGTGC...GGGCCACTGCTCTAAGCCAGTAAATGGCTCCAGCTCCAGGTCCTGCGCTGTGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR CCA 90 bp AAGCAGAGCTGGGCGCGGGGTGCAGCTGGGAGAATCTACTTGAGGCCTCAGAGGTTCTATCCCAGAGTGTaGGGACTGTGGCCTCTGCCT +
Preference number: 2 (lower is better)
Translates to: KQSWARGAAGRIYLRPQRFYPRV*GLWPLP
Trigger: AGGCAGAGGCCACAGTCCCCACACTCTGGGATAGAA...CCTCTGAGGCCTCAAGTAGATTCTCCCAGCTGCACCCCGCGCCCAGCTCTGCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR CCA 90 bp ATGCAGCATGTGTGCTGGGCTCCCTGCAGGCAGATCTGTCATGGAGTCCAGAGCGAGCCACGGTGCAGCTaGTCAGCAGTGTGCAAGGGA +
Preference number: 2 (lower is better)
Translates to: MQHVCWAPCRQICHGVQSEPRCS*SAVCKG
Trigger: TCCCTTGCACACTGCTGACCAGCTGCACCGTGGCTC...GCTCTGGACTCCATGACAGATCTGCCTGCAGGGAGCCCAGCACACATGCTGCAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220091.2
3UTR-3UTR TCA 90 bp CTGGTTGGTGAGGTAGAGGACAGATGCCAGTCCAGAAGCCACTGCTGGGGCAGACTGGGAGAATCTACTTaGGGCCTCAGAGGCCTGAGC +
Preference number: 2 (lower is better)
Translates to: LVGEVEDRCQSRSHCWGRLGEST*GLRGLS
Trigger: GCTCAGGCCTCTGAGGCCTCAAGTAGATTCTCCCAG...TCTGCCCCAGCAGTGGCTTCTGGACTGGCATCTGTCCTCTACCTCACCAACCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR GCA 90 bp AGCATGTGTGCTGGGCTCCCTGCAGGCAGATCTGTCATGGAGTCCAGAGCCTGGGAGGTAGAGGACAGATaGCAGTCCAGAAGCCACTGC +
Preference number: 2 (lower is better)
Translates to: SMCAGLPAGRSVMESRAWEVEDR*QSRSHC
Trigger: GCAGTGGCTTCTGGACTGGCATCTGTCCTCTACCTC...CCAGGCTCTGGACTCCATGACAGATCTGCCTGCAGGGAGCCCAGCACACATGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR GCA 90 bp ACCCTTTCCCATGCAAGTGTGGGTGGCCGTGGCTCCCGAGTTCTATCCCAGAGTGTGTGCTGGGCTCCCTaGAGGCAGATCTGTCATGGA +
Preference number: 2 (lower is better)
Translates to: TLSHASVGGRGSRVLSQSVCWAP*RQICHG
Trigger: TCCATGACAGATCTGCCTGCAGGGAGCCCAGCACAC...ACTCTGGGATAGAACTCGGGAGCCACGGCCACCCACACTTGCATGGGAAAGGGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR CCA 90 bp CCCAGCTGTCCCTGCTTGTCATCCTGCAGCAGACACCCTTTCCCATGCAAGTGTTCCAGAAGCCACTGCTaGGGCAGAGGGCAGTGTCCT +
Preference number: 2 (lower is better)
Translates to: PSCPCLSSCSRHPFPCKCSRSHC*GRGQCP
Trigger: AGGACACTGCCCTCTGCCCCAGCAGTGGCTTCTGGA...ACACTTGCATGGGAAAGGGTGTCTGCTGCAGGATGACAAGCAGGGACAGCTGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR CCA 90 bp TTTCCCATGCAAGTGTGGGTGGCCGTGGCTCCCGAGTTCTATCCCAGAGTGTGGATGCAGCATGTGTGCTaGGCTCCCTGCAGGCAGATC +
Preference number: 2 (lower is better)
Translates to: FPMQVWVAVAPEFYPRVWMQHVC*APCRQI
Trigger: GATCTGCCTGCAGGGAGCCCAGCACACATGCTGCAT...CCACACTCTGGGATAGAACTCGGGAGCCACGGCCACCCACACTTGCATGGGAAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR TCA 90 bp CCAGCTGTCCCTGCTTGTCATCCTGCAGCAGACACCCTTTCCCATGCAAGTGTGCAGCAGCTGCCTCTGTaGCACCAAGGAAGTCCCAGA +
Preference number: 2 (lower is better)
Translates to: PAVPACHPAADTLSHASVQQLPL*HQGSPR
Trigger: TCTGGGACTTCCTTGGTGTCACAGAGGCAGCTGCTG...CACACTTGCATGGGAAAGGGTGTCTGCTGCAGGATGACAAGCAGGGACAGCTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR GCA 90 bp ACCCTTTCCCATGCAAGTGTGGGTGGCCGTGGCTCCCGAGTTCTATCCCAGAGTGAGGTAGAGGACAGATaGCAGTCCAGAAGCCACTGC +
Preference number: 2 (lower is better)
Translates to: TLSHASVGGRGSRVLSQSEVEDR*QSRSHC
Trigger: GCAGTGGCTTCTGGACTGGCATCTGTCCTCTACCTC...ACTCTGGGATAGAACTCGGGAGCCACGGCCACCCACACTTGCATGGGAAAGGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR CCA 90 bp GTGGCCTTAGGGGGCTATCGCCGCACTCATAGCAAACTGGTATTCACCGCAAAAGGTCTGTCACCCTGGTaGGTGGCAGCTGTCCCTGTC +
Preference number: 2 (lower is better)
Translates to: VALGGYRRTHSKLVFTAKGLSPW*VAAVPV
Trigger: GACAGGGACAGCTGCCACCCACCAGGGTGACAGACC...TTTTGCGGTGAATACCAGTTTGCTATGAGTGCGGCGATAGCCCCCTAAGGCCAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000220091.2
3UTR-3UTR CCA 90 bp CTGGAGCTGGAGCCATTTACTGGCTTAGAGCAGTGGCCCACGCTCTCAACTCCACGGCCTTGCATGGAGTaGGCAGCAGATGAAGCTCAC +
Preference number: 2 (lower is better)
Translates to: LELEPFTGLEQWPTLSTPRPCME*AADEAH
Trigger: GTGAGCTTCATCTGCTGCCCACTCCATGCAAGGCCG...TGGAGTTGAGAGCGTGGGCCACTGCTCTAAGCCAGTAAATGGCTCCAGCTCCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR CCA 90 bp CCCAGCTGTCCCTGCTTGTCATCCTGCAGCAGACACCCTTTCCCATGCAAGTGTTTCTATCCCAGAGTGTaGGGACTGTGGCCTCTGCCT +
Preference number: 2 (lower is better)
Translates to: PSCPCLSSCSRHPFPCKCFYPRV*GLWPLP
Trigger: AGGCAGAGGCCACAGTCCCCACACTCTGGGATAGAA...ACACTTGCATGGGAAAGGGTGTCTGCTGCAGGATGACAAGCAGGGACAGCTGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR CCA 90 bp CTTGCTGGGGACATGGACCCATCCACACGTGGCCAGCTCCCACCAGGCTGCACATCTAACTATCCATTCTaGTTAGACAGGGTGCCTAGG +
Preference number: 2 (lower is better)
Translates to: LAGDMDPSTRGQLPPGCTSNYPF*LDRVPR
Trigger: CCTAGGCACCCTGTCTAACCAGAATGGATAGTTAGA...TGTGCAGCCTGGTGGGAGCTGGCCACGTGTGGATGGGTCCATGTCCCCAGCAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR CCA 90 bp CAGATGAAGCTCACGGCCTGGTGCAAAGCAGAGCTGGGCGCGGGGTGCAGCTGGGGTGAAAGGACTGCTTaGACACCCAATATAAAATGG +
Preference number: 2 (lower is better)
Translates to: QMKLTAWCKAELGAGCSWGERTA*TPNIKW
Trigger: CCATTTTATATTGGGTGTCCAAGCAGTCCTTTCACC...CCAGCTGCACCCCGCGCCCAGCTCTGCTTTGCACCAGGCCGTGAGCTTCATCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR GCA 90 bp ACCCTTTCCCATGCAAGTGTGGGTGGCCGTGGCTCCCGAGTTCTATCCCAGAGTGTGTCCTGGAAGACTTaGATGTCTGAGCTGATGGAC +
Preference number: 2 (lower is better)
Translates to: TLSHASVGGRGSRVLSQSVSWKT*MSELMD
Trigger: GTCCATCAGCTCAGACATGCAAGTCTTCCAGGACAC...ACTCTGGGATAGAACTCGGGAGCCACGGCCACCCACACTTGCATGGGAAAGGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR CCA 90 bp CCTTGCATGGAGTGGGCAGCAGATGAAGCTCACGGCCTGGTGCAAAGCAGAGCTGCACTCATAGCAAACTaGTATTCACCGCAAAACCGC +
Preference number: 2 (lower is better)
Translates to: PCMEWAADEAHGLVQSRAALIAN*YSPQNR
Trigger: GCGGTTTTGCGGTGAATACCAGTTTGCTATGAGTGC...AGCTCTGCTTTGCACCAGGCCGTGAGCTTCATCTGCTGCCCACTCCATGCAAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220091.2
3UTR-3UTR CCA 90 bp CTTTCCCATGCAAGTGTGGGTGGCCGTGGCTCCCGAGTTCTATCCCAGAGTGTGTCTAACTATCCATTCTaGTTAGACAGGGTGCCTAGG +
Preference number: 2 (lower is better)
Translates to: LSHASVGGRGSRVLSQSVSNYPF*LDRVPR
Trigger: CCTAGGCACCCTGTCTAACCAGAATGGATAGTTAGA...CACACTCTGGGATAGAACTCGGGAGCCACGGCCACCCACACTTGCATGGGAAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR CCA 90 bp AGAGCAGTGGCCCACGCTCTCAACTCCATCTTGGCATGGACTCTCCTGAAGGGGGGTGAAAGGACTGCTTaGACACCCAATATAAAATGG +
Preference number: 2 (lower is better)
Translates to: RAVAHALNSILAWTLLKGGERTA*TPNIKW
Trigger: CCATTTTATATTGGGTGTCCAAGCAGTCCTTTCACC...CCCCTTCAGGAGAGTCCATGCCAAGATGGAGTTGAGAGCGTGGGCCACTGCTCT
52% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR CCA 90 bp TTCCCATGCAAGTGTGGGTGGCCGTGGCTCCCGAGTTCTATCCCAGAGTGTGGGACACCCAATATAAAATaGCTTGTCAAATCCAATGGC +
Preference number: 2 (lower is better)
Translates to: FPCKCGWPWLPSSIPECGTPNIK*LVKSNG
Trigger: GCCATTGGATTTGACAAGCCATTTTATATTGGGTGT...CCCACACTCTGGGATAGAACTCGGGAGCCACGGCCACCCACACTTGCATGGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR TCA 72 bp GTGGAGGGAGGCGCGGCCGTAGGAGCATCTGCAGGGTaGGCATCGGCCGAGCACTGTGGGCAGCGGCCTTGC +
Preference number: 3 (lower is better)
Translates to: VEGGAAVGASAG*ASAEHCGQRPC
Trigger: GCAAGGCCGCTGCCCACAGTGCTCGGCCGATGCTCACCCTGCAGATGCTCCTACGGCCGCGCCTCCCTCCAC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR CCA 72 bp CTGTCCCCTGCAGGTCCCAGGTGGTCAGCATCTGTGTaGCGTGGAAGGCGGCGAGGGCCCAGCTCTCACCCC +
Preference number: 3 (lower is better)
Translates to: LSPAGPRWSASV*RGRRRGPSSHP
Trigger: GGGGTGAGAGCTGGGCCCTCGCCGCCTTCCACGCCACACAGATGCTGACCACCTGGGACCTGCAGGGGACAG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR CAA 90 bp TGTGGAGGGAGGCGCGGCCGTAGGAGCATCTGCAGGGTGAGCATCGGCCGAGCACTGTGGGCAGCGGCCTaGCATGGAGTGGGCAGCAGA +
Preference number: 3 (lower is better)
Translates to: CGGRRGRRSICRVSIGRALWAAA*HGVGSR
Trigger: TCTGCTGCCCACTCCATGCAAGGCCGCTGCCCACAG...TGCTCGGCCGATGCTCACCCTGCAGATGCTCCTACGGCCGCGCCTCCCTCCACA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR CCA 72 bp CCCTGCAGGTCCCAGGTGGTCAGCATCTGTGTGGCGTaGAAGGCGGCGAGGGCCCAGCTCTCACCCCTCTTC +
Preference number: 3 (lower is better)
Translates to: PCRSQVVSICVA*KAARAQLSPLF
Trigger: GAAGAGGGGTGAGAGCTGGGCCCTCGCCGCCTTCCACGCCACACAGATGCTGACCACCTGGGACCTGCAGGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR CCA 72 bp GAGCATCGGCCGAGCACTGTGGGCAGCGGCCTTGCATaGAGTGGGCAGCAGATGAAGCTCACGGCCTGGTGC +
Preference number: 3 (lower is better)
Translates to: EHRPSTVGSGLA*SGQQMKLTAWC
Trigger: GCACCAGGCCGTGAGCTTCATCTGCTGCCCACTCCATGCAAGGCCGCTGCCCACAGTGCTCGGCCGATGCTC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR CCA 72 bp CTGCGGCTCCGGCCTCCTCAGTGGACAGGGGGCTCTTaGCTAGCTCTTCACTTGGAGGCTGCTCGGAGAGGG +
Preference number: 3 (lower is better)
Translates to: LRLRPPQWTGGS*LALHLEAARRG
Trigger: CCCTCTCCGAGCAGCCTCCAAGTGAAGAGCTAGCCAAGAGCCCCCTGTCCACTGAGGAGGCCGGAGCCGCAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR TCA 72 bp CTGTGGGCAGCGGCCTTGCATGGAGTGGGCAGCAGATaGAGCTCACGGCCTGGTGCAAAGCAGAGCTGGGCG +
Preference number: 3 (lower is better)
Translates to: LWAAALHGVGSR*SSRPGAKQSWA
Trigger: CGCCCAGCTCTGCTTTGCACCAGGCCGTGAGCTTCATCTGCTGCCCACTCCATGCAAGGCCGCTGCCCACAG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR GCA 72 bp CTCACGGCCTGGTGCAAAGCAGAGCTGGGCGCGGGGTaGAGCTGGGAGAATCTACTTGAGGCCTCAGAGGCC +
Preference number: 3 (lower is better)
Translates to: LTAWCKAELGAG*SWENLLEASEA
Trigger: GGCCTCTGAGGCCTCAAGTAGATTCTCCCAGCTGCACCCCGCGCCCAGCTCTGCTTTGCACCAGGCCGTGAG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR GCA 72 bp GGCGCCACAGAGCCACGGTGCAGCTGGTCAGCAGTGTaGAAGGGACCAGGTAGAGTAGTGCAGGCTGGCCAC +
Preference number: 3 (lower is better)
Translates to: GATEPRCSWSAV*KGPGRVVQAGH
Trigger: GTGGCCAGCCTGCACTACTCTACCTGGTCCCTTGCACACTGCTGACCAGCTGCACCGTGGCTCTGTGGCGCC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220091.2
3UTR GCA 72 bp ACTGGCCACAGGGTTGTCAGGATCCTTGGCAGGGTCTaGGGCTCCGGCCTCCTCAGTGGACAGGGGGCTCTT +
Preference number: 3 (lower is better)
Translates to: TGHRVVRILGRV*GSGLLSGQGAL
Trigger: AAGAGCCCCCTGTCCACTGAGGAGGCCGGAGCCGCAGACCCTGCCAAGGATCCTGACAACCCTGTGGCCAGT
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR CCA 72 bp TCGGCCGAGCACTGTGGGCAGCGGCCTTGCATGGAGTaGGCAGCAGATGAAGCTCACGGCCTGGTGCAAAGC +
Preference number: 3 (lower is better)
Translates to: SAEHCGQRPCME*AADEAHGLVQS
Trigger: GCTTTGCACCAGGCCGTGAGCTTCATCTGCTGCCCACTCCATGCAAGGCCGCTGCCCACAGTGCTCGGCCGA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR CCA 72 bp CAACTCCATCTTGGCATGGACTCTCCTGAAGGGGTTTaGGCCCCGCGGGCAGAGTGCCCACAGACAGGCCCC +
Preference number: 3 (lower is better)
Translates to: QLHLGMDSPEGV*APRAECPQTGP
Trigger: GGGGCCTGTCTGTGGGCACTCTGCCCGCGGGGCCCAAACCCCTTCAGGAGAGTCCATGCCAAGATGGAGTTG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR GCA 72 bp GACAGGGGGCTCTTGGCTAGCTCTTCACTTGGAGGCTaGTCGGAGAGGGAGGAACCCACAGCCTTCGGAGGC +
Preference number: 3 (lower is better)
Translates to: DRGLLASSSLGG*SEREEPTAFGG
Trigger: GCCTCCGAAGGCTGTGGGTTCCTCCCTCTCCGAGCAGCCTCCAAGTGAAGAGCTAGCCAAGAGCCCCCTGTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR CCA 72 bp GATCCTTGGCAGGGTCTGCGGCTCCGGCCTCCTCAGTaGACAGGGGGCTCTTGGCTAGCTCTTCACTTGGAG +
Preference number: 3 (lower is better)
Translates to: DPWQGLRLRPPQ*TGGSWLALHLE
Trigger: CTCCAAGTGAAGAGCTAGCCAAGAGCCCCCTGTCCACTGAGGAGGCCGGAGCCGCAGACCCTGCCAAGGATC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR CAA 90 bp TCCAGAAGCCACTGCTGGGGCAGAGGGCAGTGTCCTGGAAGACTTGCATGTCTGCTGTGGGCAGCGGCCTaGCATGGAGTGGGCAGCAGA +
Preference number: 3 (lower is better)
Translates to: SRSHCWGRGQCPGRLACLLWAAA*HGVGSR
Trigger: TCTGCTGCCCACTCCATGCAAGGCCGCTGCCCACAG...CAGACATGCAAGTCTTCCAGGACACTGCCCTCTGCCCCAGCAGTGGCTTCTGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR TCA 72 bp GGGCTCAGTGGGAGCACAAGGAGGCTGGACTCAACTTaGCCTGGTGGCCTTAGGGGGCTATCGCCGCACTCA +
Preference number: 3 (lower is better)
Translates to: GLSGSTRRLDST*PGGLRGLSPHS
Trigger: TGAGTGCGGCGATAGCCCCCTAAGGCCACCAGGTCAAGTTGAGTCCAGCCTCCTTGTGCTCCCACTGAGCCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000220091.2
3UTR TCA 72 bp TGGGCAGATCCCTGCCTATCCCAGCAGCTGCCTCTGTaGCACCAAGGAAGTCCCAGAGCACAGAGCCCCCTG +
Preference number: 3 (lower is better)
Translates to: WADPCLSQQLPL*HQGSPRAQSPL
Trigger: CAGGGGGCTCTGTGCTCTGGGACTTCCTTGGTGTCACAGAGGCAGCTGCTGGGATAGGCAGGGATCTGCCCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR GCA 72 bp ATGGACCCATCCACACGTGGCCAGCTCCCACCAGGCTaGACAGCGCAGGACCTGGAGCTGGAGCCATTTACT +
Preference number: 3 (lower is better)
Translates to: MDPSTRGQLPPG*TAQDLELEPFT
Trigger: AGTAAATGGCTCCAGCTCCAGGTCCTGCGCTGTGCAGCCTGGTGGGAGCTGGCCACGTGTGGATGGGTCCAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR GCA 72 bp CAGAGTGTGGGGACTGTGGCCTCTGCCTCGGTGACATaGAGCATGTGTGCTGGGCTCCCTGCAGGCAGATCT +
Preference number: 3 (lower is better)
Translates to: QSVGTVASASVT*SMCAGLPAGRS
Trigger: AGATCTGCCTGCAGGGAGCCCAGCACACATGCTGCATGTCACCGAGGCAGAGGCCACAGTCCCCACACTCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR GCA 72 bp CCGAGTTCTATCCCAGAGTGTGGGGACTGTGGCCTCTaGCTCGGTGACATGCAGCATGTGTGCTGGGCTCCC +
Preference number: 3 (lower is better)
Translates to: PSSIPECGDCGL*LGDMQHVCWAP
Trigger: GGGAGCCCAGCACACATGCTGCATGTCACCGAGGCAGAGGCCACAGTCCCCACACTCTGGGATAGAACTCGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR GCA 72 bp GCTGGCCCTGGGCAGATCCCTGCCTATCCCAGCAGCTaGCTCTGTGACACCAAGGAAGTCCCAGAGCACAGA +
Preference number: 3 (lower is better)
Translates to: AGPGQIPAYPSS*LCDTKEVPEHR
Trigger: TCTGTGCTCTGGGACTTCCTTGGTGTCACAGAGGCAGCTGCTGGGATAGGCAGGGATCTGCCCAGGGCCAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR CCA 72 bp ACCCAGGCCAGGGGCTCAGTGGGAGCACAAGGAGGCTaGACTCAACTTGACCTGGTGGCCTTAGGGGGCTAT +
Preference number: 3 (lower is better)
Translates to: TQARGSVGAQGG*TQLDLVALGGY
Trigger: ATAGCCCCCTAAGGCCACCAGGTCAAGTTGAGTCCAGCCTCCTTGTGCTCCCACTGAGCCCCTGGCCTGGGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR CCA 72 bp ATGTACCCTCCATCCTCTTCAGCTGCTACAGGGCGGTaGGGGTGGGGGCTCAGCAATGCGGCAGGAGTGTTC +
Preference number: 3 (lower is better)
Translates to: MYPPSSSAATGR*GWGLSNAAGVF
Trigger: GAACACTCCTGCCGCATTGCTGAGCCCCCACCCCCACCGCCCTGTAGCAGCTGAAGAGGATGGAGGGTACAT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR CCA 72 bp GTACCCAAGAAGCAAGGCTCATCTTGGGGAGCCACGTaGCACCCACTGTCTGTGGTGGGCACTCCCCATCCC +
Preference number: 3 (lower is better)
Translates to: VPKKQGSSWGAT*HPLSVVGTPHP
Trigger: GGGATGGGGAGTGCCCACCACAGACAGTGGGTGCCACGTGGCTCCCCAAGATGAGCCTTGCTTCTTGGGTAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR CCA 72 bp CCCCTGGAAGACGTACCCAAGAAGCAAGGCTCATCTTaGGGAGCCACGTGGCACCCACTGTCTGTGGTGGGC +
Preference number: 3 (lower is better)
Translates to: PLEDVPKKQGSS*GATWHPLSVVG
Trigger: GCCCACCACAGACAGTGGGTGCCACGTGGCTCCCCAAGATGAGCCTTGCTTCTTGGGTACGTCTTCCAGGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR GCA 72 bp GACTGTGGCCTCTGCCTCGGTGACATGCAGCATGTGTaGTGGGCTCCCTGCAGGCAGATCTGTCATGGAGTC +
Preference number: 3 (lower is better)
Translates to: DCGLCLGDMQHV*WAPCRQICHGV
Trigger: GACTCCATGACAGATCTGCCTGCAGGGAGCCCAGCACACATGCTGCATGTCACCGAGGCAGAGGCCACAGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR GCA 72 bp GCACTCATAGCAAACTGGTATTCACCGCAAAACCGCTaGCCGTCCAGAAGGCACCCAGCTCCCGGCGCCACA +
Preference number: 3 (lower is better)
Translates to: ALIANWYSPQNR*PSRRHPAPGAT
Trigger: TGTGGCGCCGGGAGCTGGGTGCCTTCTGGACGGGCAGCGGTTTTGCGGTGAATACCAGTTTGCTATGAGTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220091.2
3UTR CCA 72 bp TGTGGCCTCTGCCTCGGTGACATGCAGCATGTGTGCTaGGCTCCCTGCAGGCAGATCTGTCATGGAGTCCAG +
Preference number: 3 (lower is better)
Translates to: CGLCLGDMQHVC*APCRQICHGVQ
Trigger: CTGGACTCCATGACAGATCTGCCTGCAGGGAGCCCAGCACACATGCTGCATGTCACCGAGGCAGAGGCCACA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR CAA 90 bp GGCACCCACTGTCTGTGGTGGGCACTCCCCATCCCCTCACAGCCCTTCAATGTAGCTGGGAGAATCTACTaGAGGCCTCAGAGGCCTGAG +
Preference number: 3 (lower is better)
Translates to: GTHCLWWALPIPSQPFNVAGRIY*RPQRPE
Trigger: CTCAGGCCTCTGAGGCCTCAAGTAGATTCTCCCAGC...TACATTGAAGGGCTGTGAGGGGATGGGGAGTGCCCACCACAGACAGTGGGTGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR CAA 90 bp CTTGCTGGGGACATGGACCCATCCACACGTGGCCAGCTCCCACCAGGCTGCACAGCTCTCAACTCCATCTaGGCATGGACTCTCCTGAAG +
Preference number: 3 (lower is better)
Translates to: LAGDMDPSTRGQLPPGCTALNSI*AWTLLK
Trigger: CTTCAGGAGAGTCCATGCCAAGATGGAGTTGAGAGC...TGTGCAGCCTGGTGGGAGCTGGCCACGTGTGGATGGGTCCATGTCCCCAGCAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR CAA 90 bp CCAGCTGTCCCTGCTTGTCATCCTGCAGCAGACACCCTTTCCCATGCAAGTGTGGGACTGGCCACAGGGTaGTCAGGATCCTTGGCAGGG +
Preference number: 3 (lower is better)
Translates to: PAVPACHPAADTLSHASVGLATG*SGSLAG
Trigger: CCCTGCCAAGGATCCTGACAACCCTGTGGCCAGTCC...CACACTTGCATGGGAAAGGGTGTCTGCTGCAGGATGACAAGCAGGGACAGCTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR TCA 72 bp AGAGAGTTCCCCACAGGGAACCAGAAAGCTCAAGCATaGCCTTCCAGAAGCGAGGGACCCAGGCCAGGGGCT +
Preference number: 3 (lower is better)
Translates to: REFPTGNQKAQA*PSRSEGPRPGA
Trigger: AGCCCCTGGCCTGGGTCCCTCGCTTCTGGAAGGTCATGCTTGAGCTTTCTGGTTCCCTGTGGGGAACTCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR GCA 72 bp CCACTGCTGGGGCAGAGGGCAGTGTCCTGGAAGACTTaGATGTCTGAGCTGATGGACTTGCTGGGGACATGG +
Preference number: 3 (lower is better)
Translates to: PLLGQRAVSWKT*MSELMDLLGTW
Trigger: CCATGTCCCCAGCAAGTCCATCAGCTCAGACATGCAAGTCTTCCAGGACACTGCCCTCTGCCCCAGCAGTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR GCA 72 bp GGTGAGGTAGAGGACAGATGCCAGTCCAGAAGCCACTaGTGGGGCAGAGGGCAGTGTCCTGGAAGACTTGCA +
Preference number: 3 (lower is better)
Translates to: GEVEDRCQSRSH*WGRGQCPGRLA
Trigger: TGCAAGTCTTCCAGGACACTGCCCTCTGCCCCAGCAGTGGCTTCTGGACTGGCATCTGTCCTCTACCTCACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR GCA 72 bp TGCCTCGGTGACATGCAGCATGTGTGCTGGGCTCCCTaGAGGCAGATCTGTCATGGAGTCCAGAGCCTGGTT +
Preference number: 3 (lower is better)
Translates to: CLGDMQHVCWAP*RQICHGVQSLV
Trigger: AACCAGGCTCTGGACTCCATGACAGATCTGCCTGCAGGGAGCCCAGCACACATGCTGCATGTCACCGAGGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR CCA 72 bp CTGCACAGCGCAGGACCTGGAGCTGGAGCCATTTACTaGCTTAGAGCAGTGGCCCACGCTCTCAACTCCATC +
Preference number: 3 (lower is better)
Translates to: LHSAGPGAGAIY*LRAVAHALNSI
Trigger: GATGGAGTTGAGAGCGTGGGCCACTGCTCTAAGCCAGTAAATGGCTCCAGCTCCAGGTCCTGCGCTGTGCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR CCA 72 bp ACTTGCATGTCTGAGCTGATGGACTTGCTGGGGACATaGACCCATCCACACGTGGCCAGCTCCCACCAGGCT +
Preference number: 3 (lower is better)
Translates to: TCMSELMDLLGT*THPHVASSHQA
Trigger: AGCCTGGTGGGAGCTGGCCACGTGTGGATGGGTCCATGTCCCCAGCAAGTCCATCAGCTCAGACATGCAAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR CCA 72 bp AGCAGACACCCTTTCCCATGCAAGTGTGGGTGGCCGTaGCTCCCGAGTTCTATCCCAGAGTGTGGGGACTGT +
Preference number: 3 (lower is better)
Translates to: SRHPFPCKCGWP*LPSSIPECGDC
Trigger: ACAGTCCCCACACTCTGGGATAGAACTCGGGAGCCACGGCCACCCACACTTGCATGGGAAAGGGTGTCTGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR CCA 72 bp GTCATCCTGCAGCAGACACCCTTTCCCATGCAAGTGTaGGTGGCCGTGGCTCCCGAGTTCTATCCCAGAGTG +
Preference number: 3 (lower is better)
Translates to: VILQQTPFPMQV*VAVAPEFYPRV
Trigger: CACTCTGGGATAGAACTCGGGAGCCACGGCCACCCACACTTGCATGGGAAAGGGTGTCTGCTGCAGGATGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR CCA 72 bp CAGCTCTCACCCCTCTTCTTCCTAGGCCGAAGTCTCTaGCTTCACCACAGGGATAGGCTGAGCCTCATCCCC +
Preference number: 3 (lower is better)
Translates to: QLSPLFFLGRSL*LHHRDRLSLIP
Trigger: GGGGATGAGGCTCAGCCTATCCCTGTGGTGAAGCCAGAGACTTCGGCCTAGGAAGAAGAGGGGTGAGAGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR CAA 90 bp ATGCAGCATGTGTGCTGGGCTCCCTGCAGGCAGATCTGTCATGGAGTCCAGAGCGCTGGGAGAATCTACTaGAGGCCTCAGAGGCCTGAG +
Preference number: 3 (lower is better)
Translates to: MQHVCWAPCRQICHGVQSAGRIY*RPQRPE
Trigger: CTCAGGCCTCTGAGGCCTCAAGTAGATTCTCCCAGC...GCTCTGGACTCCATGACAGATCTGCCTGCAGGGAGCCCAGCACACATGCTGCAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR CAA 90 bp TGCACAGCGCAGGACCTGGAGCTGGAGCCATTTACTGGCTTAGAGCAGTGGCCCAACATAGGAACCTGCTaGTTGGGGTTGCTCTGGCCC +
Preference number: 3 (lower is better)
Translates to: CTAQDLELEPFTGLEQWPNIGTC*LGLLWP
Trigger: GGGCCAGAGCAACCCCAACAAGCAGGTTCCTATGTT...GGGCCACTGCTCTAAGCCAGTAAATGGCTCCAGCTCCAGGTCCTGCGCTGTGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR GCA 72 bp TCAGAGCAGACCCCAACGGGGCAGAACCCACACAGGTaGAGGACACTTAGAGCAGGAGGCATTCAGCAACCA +
Preference number: 3 (lower is better)
Translates to: SEQTPTGQNPHR*RTLRAGGIQQP
Trigger: TGGTTGCTGAATGCCTCCTGCTCTAAGTGTCCTGCACCTGTGTGGGTTCTGCCCCGTTGGGGTCTGCTCTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR CCA 72 bp GAGGTAGAGGACAGATGCCAGTCCAGAAGCCACTGCTaGGGCAGAGGGCAGTGTCCTGGAAGACTTGCATGT +
Preference number: 3 (lower is better)
Translates to: EVEDRCQSRSHC*GRGQCPGRLAC
Trigger: ACATGCAAGTCTTCCAGGACACTGCCCTCTGCCCCAGCAGTGGCTTCTGGACTGGCATCTGTCCTCTACCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR CAA 90 bp CTGGTTGGTGAGGTAGAGGACAGATGCCAGTCCAGAAGCCACTGCTGGGGCAGAGCTCTCAACTCCATCTaGGCATGGACTCTCCTGAAG +
Preference number: 3 (lower is better)
Translates to: LVGEVEDRCQSRSHCWGRALNSI*AWTLLK
Trigger: CTTCAGGAGAGTCCATGCCAAGATGGAGTTGAGAGC...TCTGCCCCAGCAGTGGCTTCTGGACTGGCATCTGTCCTCTACCTCACCAACCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR GCA 72 bp AGGGCAGCAAGTGCTCTCCATCTCACGCCTCCCCAGTaGTCCTCTGAGCAATCCCACTCATCAGTGAAATCC +
Preference number: 3 (lower is better)
Translates to: RAASALHLTPPQ*SSEQSHSSVKS
Trigger: GGATTTCACTGATGAGTGGGATTGCTCAGAGGAGCACTGGGGAGGCGTGAGATGGAGAGCACTTGCTGCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR CCA 72 bp GACCTGGAGCTGGAGCCATTTACTGGCTTAGAGCAGTaGCCCACGCTCTCAACTCCATCTTGGCATGGACTC +
Preference number: 3 (lower is better)
Translates to: DLELEPFTGLEQ*PTLSTPSWHGL
Trigger: GAGTCCATGCCAAGATGGAGTTGAGAGCGTGGGCCACTGCTCTAAGCCAGTAAATGGCTCCAGCTCCAGGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR CCA 72 bp TGTGACACCAAGGAAGTCCCAGAGCACAGAGCCCCCTaGAAGACGTACCCAAGAAGCAAGGCTCATCTTGGG +
Preference number: 3 (lower is better)
Translates to: CDTKEVPEHRAP*KTYPRSKAHLG
Trigger: CCCAAGATGAGCCTTGCTTCTTGGGTACGTCTTCCAGGGGGCTCTGTGCTCTGGGACTTCCTTGGTGTCACA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR-3UTR CAA 90 bp CACCAAGGAAGTCCCAGAGCACAGAGCCCCCTGGAAGACGTACCCAAGAAGCAAGCTCTCAACTCCATCTaGGCATGGACTCTCCTGAAG +
Preference number: 3 (lower is better)
Translates to: HQGSPRAQSPLEDVPKKQALNSI*AWTLLK
Trigger: CTTCAGGAGAGTCCATGCCAAGATGGAGTTGAGAGC...TTGCTTCTTGGGTACGTCTTCCAGGGGGCTCTGTGCTCTGGGACTTCCTTGGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR TCA 72 bp CGGGACCTCGCGGAGCACCTCCGACTACCCAAGAGGTaGAAGGACTGCTTGGACACCCAATATAAAATGGCT +
Preference number: 3 (lower is better)
Translates to: RDLAEHLRLPKR*KDCLDTQYKMA
Trigger: AGCCATTTTATATTGGGTGTCCAAGCAGTCCTTTCACCTCTTGGGTAGTCGGAGGTGCTCCGCGAGGTCCCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR CCA 72 bp ATAAAATGGCTTGTCAAATCCAATGGCAGAAGCAGGTaGCTAGGCCCCAGCGCTCCTCTAACTATCCATTCT +
Preference number: 3 (lower is better)
Translates to: IKWLVKSNGRSR*LGPSAPLTIHS
Trigger: AGAATGGATAGTTAGAGGAGCGCTGGGGCCTAGCCACCTGCTTCTGCCATTGGATTTGACAAGCCATTTTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR CCA 72 bp AGCACCTCCGACTACCCAAGAGGTGAAAGGACTGCTTaGACACCCAATATAAAATGGCTTGTCAAATCCAAT +
Preference number: 3 (lower is better)
Translates to: STSDYPRGERTA*TPNIKWLVKSN
Trigger: ATTGGATTTGACAAGCCATTTTATATTGGGTGTCCAAGCAGTCCTTTCACCTCTTGGGTAGTCGGAGGTGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
CDS-3UTR CCA 90 bp GGGAGGCGCGGCCGTAGGAGCATCTGCAGGGTGAGCATCGGCCGAGCACTGTGGCTCCGGCCTCCTCAGTaGACAGGGGGCTCTTGGCTA +
Preference number: 4 (lower is better)
Translates to: GRRGRRSICRVSIGRALWLRPPQ*TGGSWL
Trigger: TAGCCAAGAGCCCCCTGTCCACTGAGGAGGCCGGAG...CCACAGTGCTCGGCCGATGCTCACCCTGCAGATGCTCCTACGGCCGCGCCTCCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035597.10
3UTR CAA 72 bp GGGCTGAGGGGACTGGCCACAGGGTTGTCAGGATCCTaGGCAGGGTCTGCGGCTCCGGCCTCCTCAGTGGAC +
Preference number: 4 (lower is better)
Translates to: GLRGLATGLSGS*AGSAAPASSVD
Trigger: GTCCACTGAGGAGGCCGGAGCCGCAGACCCTGCCAAGGATCCTGACAACCCTGTGGCCAGTCCCCTCAGCCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000218789.2
ENSMUST00000220091.2
CDS-3UTR CCA 90 bp GCTGTCCCTGTCCCCTGCAGGTCCCAGGTGGTCAGCATCTGTGTGGCGTGGAAGCCCAGTAGCCACCGATaGCGACGGTGCCCACGGCCA +
Preference number: 4 (lower is better)
Translates to: AVPVPCRSQVVSICVAWKPSSHR*RRCPRP
Trigger: TGGCCGTGGGCACCGTCGCCATCGGTGGCTACTGGG...CTTCCACGCCACACAGATGCTGACCACCTGGGACCTGCAGGGGACAGGGACAGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
CDS-3UTR TCA 90 bp GGGAGGCGCGGCCGTAGGAGCATCTGCAGGGTGAGCATCGGCCGAGCACTGTGGCAAACACGCAGATCATaGCTGGCGTCACGTCCACCG +
Preference number: 4 (lower is better)
Translates to: GRRGRRSICRVSIGRALWQTRRS*LASRPP
Trigger: CGGTGGACGTGACGCCAGTCATGATCTGCGTGTTTG...CCACAGTGCTCGGCCGATGCTCACCCTGCAGATGCTCCTACGGCCGCGCCTCCC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
CDS-3UTR GCA 90 bp CGTGGCTCCCGAGTTCTATCCCAGAGTGTGGGGACTGTGGCCTCTGCCTCGGTGCGGGGACCCTGCACGTaGAGAAGGGCAGCTTCCGCA +
Preference number: 4 (lower is better)
Translates to: RGSRVLSQSVGTVASASVRGPCT*RRAASA
Trigger: TGCGGAAGCTGCCCTTCTGCACGTGCAGGGTCCCCG...CACCGAGGCAGAGGCCACAGTCCCCACACTCTGGGATAGAACTCGGGAGCCACG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
CDS-3UTR GCA 90 bp CCTGCAGGTCCCAGGTGGTCAGCATCTGTGTGGCGTGGAAGGCGGCGAGGGCCCAGTGACACAGAAGAGTaGCAGCAGCAGCATGCGGGC +
Preference number: 4 (lower is better)
Translates to: PAGPRWSASVWRGRRRGPSDTEE*QQQHAG
Trigger: GCCCGCATGCTGCTGCTGGCACTCTTCTGTGTCACT...GGGCCCTCGCCGCCTTCCACGCCACACAGATGCTGACCACCTGGGACCTGCAGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
CDS-3UTR CCA 90 bp GGCCCACGCTCTCAACTCCATCTTGGCATGGACTCTCCTGAAGGGGTTTGGGCCGGAGGCACAGGTCCCTaGGTTGCGGCCCACGGGGTC +
Preference number: 4 (lower is better)
Translates to: GPRSQLHLGMDSPEGVWAGGTGP*VAAHGV
Trigger: GACCCCGTGGGCCGCAACCCAGGGACCTGTGCCTCC...GGCCCAAACCCCTTCAGGAGAGTCCATGCCAAGATGGAGTTGAGAGCGTGGGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035597.10
CDS-3UTR TCA 90 bp GGCCTTGCATGGAGTGGGCAGCAGATGAAGCTCACGGCCTGGTGCAAAGCAGAGACTATCAGCAGCCCGTaGGCCCCACTGCCCTGGGCC +
Preference number: 4 (lower is better)
Translates to: GLAWSGQQMKLTAWCKAETISSP*APLPWA
Trigger: GGCCCAGGGCAGTGGGGCTCACGGGCTGCTGATAGT...CTCTGCTTTGCACCAGGCCGTGAGCTTCATCTGCTGCCCACTCCATGCAAGGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035597.10
CDS-3UTR TCA 90 bp TCCATCTTGGCATGGACTCTCCTGAAGGGGTTTGGGCCCCGCGGGCAGAGTGCCGCTGGCCACGCTGCATaGGGACAAGAGCCACGAAGG +
Preference number: 4 (lower is better)
Translates to: SILAWTLLKGFGPRGQSAAGHAA*GQEPRR
Trigger: CCTTCGTGGCTCTTGTCCTCATGCAGCGTGGCCAGC...GGCACTCTGCCCGCGGGGCCCAAACCCCTTCAGGAGAGTCCATGCCAAGATGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
CDS-3UTR GCA 90 bp ACCCTTTCCCATGCAAGTGTGGGTGGCCGTGGCTCCCGAGTTCTATCCCAGAGTGCCCGTGAGCCCCACTaGCCTGGGCCAGCCGCACTT +
Preference number: 4 (lower is better)
Translates to: TLSHASVGGRGSRVLSQSAREPH*PGPAAL
Trigger: AAGTGCGGCTGGCCCAGGGCAGTGGGGCTCACGGGC...ACTCTGGGATAGAACTCGGGAGCCACGGCCACCCACACTTGCATGGGAAAGGGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035597.10
CDS-3UTR CCA 90 bp GTGCCCACAGACAGGCCCCTCGAGGCTGCTCCCAACATAGGAACCTGCTTGTTGCCCAGTAGCCACCGATaGCGACGGTGCCCACGGCCA +
Preference number: 4 (lower is better)
Translates to: VPTDRPLEAAPNIGTCLLPSSHR*RRCPRP
Trigger: TGGCCGTGGGCACCGTCGCCATCGGTGGCTACTGGG...CAACAAGCAGGTTCCTATGTTGGGAGCAGCCTCGAGGGGCCTGTCTGTGGGCAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
CDS-3UTR CCA 90 bp GAGCACTGTGGGCAGCGGCCTTGCATGGAGTGGGCAGCAGATGAAGCTCACGGCCAGCATGCGGGCCTGTaGGCGCTTGTGGAAGTACGG +
Preference number: 4 (lower is better)
Translates to: EHCGQRPCMEWAADEAHGQHAGL*ALVEVR
Trigger: CCGTACTTCCACAAGCGCCCACAGGCCCGCATGCTG...GCCGTGAGCTTCATCTGCTGCCCACTCCATGCAAGGCCGCTGCCCACAGTGCTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
CDS-3UTR CCA 90 bp TGGACTTGCTGGGGACATGGACCCATCCACACGTGGCCAGCTCCCACCAGGCTGCAGCATGCGGGCCTGTaGGCGCTTGTGGAAGTACGG +
Preference number: 4 (lower is better)
Translates to: WTCWGHGPIHTWPAPTRLQHAGL*ALVEVR
Trigger: CCGTACTTCCACAAGCGCCCACAGGCCCGCATGCTG...CAGCCTGGTGGGAGCTGGCCACGTGTGGATGGGTCCATGTCCCCAGCAAGTCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
3UTR CAA 72 bp CAGAGCTGGGCGCGGGGTGCAGCTGGGAGAATCTACTaGAGGCCTCAGAGGCCTGAGCACCATGTTAGGGGG +
Preference number: 4 (lower is better)
Translates to: QSWARGAAGRIY*RPQRPEHHVRG
Trigger: CCCCCTAACATGGTGCTCAGGCCTCTGAGGCCTCAAGTAGATTCTCCCAGCTGCACCCCGCGCCCAGCTCTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
CDS-3UTR GCA 90 bp GGCCCACGCTCTCAACTCCATCTTGGCATGGACTCTCCTGAAGGGGTTTGGGCCCGGGGACCCTGCACGTaGAGAAGGGCAGCTTCCGCA +
Preference number: 4 (lower is better)
Translates to: GPRSQLHLGMDSPEGVWARGPCT*RRAASA
Trigger: TGCGGAAGCTGCCCTTCTGCACGTGCAGGGTCCCCG...GGCCCAAACCCCTTCAGGAGAGTCCATGCCAAGATGGAGTTGAGAGCGTGGGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
CDS-3UTR GCA 90 bp ATGCAAGTGTGGGTGGCCGTGGCTCCCGAGTTCTATCCCAGAGTGTGGGGACTGCGGGGACCCTGCACGTaGAGAAGGGCAGCTTCCGCA +
Preference number: 4 (lower is better)
Translates to: MQVWVAVAPEFYPRVWGLRGPCT*RRAASA
Trigger: TGCGGAAGCTGCCCTTCTGCACGTGCAGGGTCCCCG...CAGTCCCCACACTCTGGGATAGAACTCGGGAGCCACGGCCACCCACACTTGCAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
CDS-3UTR GCA 90 bp AGCTGTCCCTGTCCCCTGCAGGTCCCAGGTGGTCAGCATCTGTGTGGCGTGGAAGCCACAGAGCCACGGTaGAGCTGGTCAGCAGTGTGC +
Preference number: 4 (lower is better)
Translates to: SCPCPLQVPGGQHLCGVEATEPR*SWSAVC
Trigger: GCACACTGCTGACCAGCTGCACCGTGGCTCTGTGGC...TTCCACGCCACACAGATGCTGACCACCTGGGACCTGCAGGGGACAGGGACAGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
CDS-3UTR CCA 90 bp CTTGCTGGGGACATGGACCCATCCACACGTGGCCAGCTCCCACCAGGCTGCACACACGCAGATCATGACTaGCGTCACGTCCACCGCCTC +
Preference number: 4 (lower is better)
Translates to: LAGDMDPSTRGQLPPGCTHADHD*RHVHRL
Trigger: GAGGCGGTGGACGTGACGCCAGTCATGATCTGCGTG...TGTGCAGCCTGGTGGGAGCTGGCCACGTGTGGATGGGTCCATGTCCCCAGCAAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
CDS-3UTR CCA 90 bp AGCATCTGCAGGGTGAGCATCGGCCGAGCACTGTGGGCAGCGGCCTTGCATGGAGCAGCTTCTCATGGGTaGATGAGTTCGAGGGCCCGG +
Preference number: 4 (lower is better)
Translates to: SICRVSIGRALWAAALHGAASHG*MSSRAR
Trigger: CCGGGCCCTCGAACTCATCCACCCATGAGAAGCTGC...TCCATGCAAGGCCGCTGCCCACAGTGCTCGGCCGATGCTCACCCTGCAGATGCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
CDS-3UTR CCA 90 bp TGGACTTGCTGGGGACATGGACCCATCCACACGTGGCCAGCTCCCACCAGGCTGGAGCCACGGTGCAGCTaGTCAGCAGTGTGCAAGGGA +
Preference number: 4 (lower is better)
Translates to: WTCWGHGPIHTWPAPTRLEPRCS*SAVCKG
Trigger: TCCCTTGCACACTGCTGACCAGCTGCACCGTGGCTC...CAGCCTGGTGGGAGCTGGCCACGTGTGGATGGGTCCATGTCCCCAGCAAGTCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
CDS-3UTR CCA 90 bp GGTCCCAGGTGGTCAGCATCTGTGTGGCGTGGAAGGCGGCGAGGGCCCAGCTCTCTAGGCCGAAGTCTCTaGCTTCACCACAGGGATAGG +
Preference number: 4 (lower is better)
Translates to: GPRWSASVWRGRRRGPSSLGRSL*LHHRDR
Trigger: CCTATCCCTGTGGTGAAGCCAGAGACTTCGGCCTAG...AGAGCTGGGCCCTCGCCGCCTTCCACGCCACACAGATGCTGACCACCTGGGACC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035597.10
CDS-3UTR TCA 90 bp CCACTCAGCACCCAGGGCAGCAAGTGCTCTCCATCTCACGCCTCCCCAGTGCTCTGGCCACCTCCACCATaGTGCTGTTGCCACTCTTGG +
Preference number: 4 (lower is better)
Translates to: PLSTQGSKCSPSHASPVLWPPPP*CCCHSW
Trigger: CCAAGAGTGGCAACAGCATCATGGTGGAGGTGGCCA...GAGCACTGGGGAGGCGTGAGATGGAGAGCACTTGCTGCCCTGGGTGCTGAGTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000218789.2
ENSMUST00000220091.2
CDS-3UTR GCA 90 bp AGCATCTGCAGGGTGAGCATCGGCCGAGCACTGTGGGCAGCGGCCTTGCATGGATCTTCACTTGGAGGCTaGTCGGAGAGGGAGGAACCC +
Preference number: 4 (lower is better)
Translates to: SICRVSIGRALWAAALHGSSLGG*SEREEP
Trigger: GGGTTCCTCCCTCTCCGAGCAGCCTCCAAGTGAAGA...TCCATGCAAGGCCGCTGCCCACAGTGCTCGGCCGATGCTCACCCTGCAGATGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035597.10
CDS-3UTR CCA 90 bp GCAGATGAAGCTCACGGCCTGGTGCAAAGCAGAGCTGGGCGCGGGGTGCAGCTGCGAGTCCTACTGGTTTaGGACACCACTCGAAGCACG +
Preference number: 4 (lower is better)
Translates to: ADEAHGLVQSRAGRGVQLRVLLV*DTTRST
Trigger: CGTGCTTCGAGTGGTGTCCCAAACCAGTAGGACTCG...CAGCTGCACCCCGCGCCCAGCTCTGCTTTGCACCAGGCCGTGAGCTTCATCTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035597.10
CDS-3UTR CCA 90 bp CTGGAGCTGGAGCCATTTACTGGCTTAGAGCAGTGGCCCACGCTCTCAACTCCACCCAGTAGCCACCGATaGCGACGGTGCCCACGGCCA +
Preference number: 4 (lower is better)
Translates to: LELEPFTGLEQWPTLSTPPSSHR*RRCPRP
Trigger: TGGCCGTGGGCACCGTCGCCATCGGTGGCTACTGGG...TGGAGTTGAGAGCGTGGGCCACTGCTCTAAGCCAGTAAATGGCTCCAGCTCCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
CDS-3UTR CCA 90 bp AGCATCTGCAGGGTGAGCATCGGCCGAGCACTGTGGGCAGCGGCCTTGCATGGAGCACCTTCAGCACCATaGGCAGCTTCTCATGGGTGG +
Preference number: 4 (lower is better)
Translates to: SICRVSIGRALWAAALHGAPSAP*AASHGW
Trigger: CCACCCATGAGAAGCTGCCCATGGTGCTGAAGGTGC...TCCATGCAAGGCCGCTGCCCACAGTGCTCGGCCGATGCTCACCCTGCAGATGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
3UTR CAA 72 bp CCTCAGTGGACAGGGGGCTCTTGGCTAGCTCTTCACTaGGAGGCTGCTCGGAGAGGGAGGAACCCACAGCCT +
Preference number: 4 (lower is better)
Translates to: PQWTGGSWLALH*EAARRGRNPQP
Trigger: AGGCTGTGGGTTCCTCCCTCTCCGAGCAGCCTCCAAGTGAAGAGCTAGCCAAGAGCCCCCTGTCCACTGAGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000218789.2
ENSMUST00000220091.2
CDS-3UTR GCA 90 bp TGGACTTGCTGGGGACATGGACCCATCCACACGTGGCCAGCTCCCACCAGGCTGGTGGGTTGTAGAGGATaGAGTAGTCCCTGCTCCGAG +
Preference number: 4 (lower is better)
Translates to: WTCWGHGPIHTWPAPTRLVGCRG*SSPCSE
Trigger: CTCGGAGCAGGGACTACTGCATCCTCTACAACCCAC...CAGCCTGGTGGGAGCTGGCCACGTGTGGATGGGTCCATGTCCCCAGCAAGTCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035597.10
CDS-3UTR GCA 90 bp CTTGCTGGGGACATGGACCCATCCACACGTGGCCAGCTCCCACCAGGCTGCACAACAGGCAGAAGGCAATaGCCAGGGTGTCTTGCAGGA +
Preference number: 4 (lower is better)
Translates to: LAGDMDPSTRGQLPPGCTTGRRQ*PGCLAG
Trigger: TCCTGCAAGACACCCTGGGCATTGCCTTCTGCCTGT...TGTGCAGCCTGGTGGGAGCTGGCCACGTGTGGATGGGTCCATGTCCCCAGCAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
CDS-3UTR CCA 90 bp GGCCTTGCATGGAGTGGGCAGCAGATGAAGCTCACGGCCTGGTGCAAAGCAGAGCACGCAGATCATGACTaGCGTCACGTCCACCGCCTC +
Preference number: 4 (lower is better)
Translates to: GLAWSGQQMKLTAWCKAEHADHD*RHVHRL
Trigger: GAGGCGGTGGACGTGACGCCAGTCATGATCTGCGTG...CTCTGCTTTGCACCAGGCCGTGAGCTTCATCTGCTGCCCACTCCATGCAAGGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
CDS-3UTR CCA 90 bp CAGCGGCCTTGCATGGAGTGGGCAGCAGATGAAGCTCACGGCCTGGTGCAAAGCAGCTGTAGAGACCGGTaGAGGAGGCCAGGCAGAAGA +
Preference number: 4 (lower is better)
Translates to: QRPCMEWAADEAHGLVQSSCRDR*RRPGRR
Trigger: TCTTCTGCCTGGCCTCCTCCACCGGTCTCTACAGCT...GCTTTGCACCAGGCCGTGAGCTTCATCTGCTGCCCACTCCATGCAAGGCCGCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
CDS-3UTR CCA 90 bp TTCCCATGCAAGTGTGGGTGGCCGTGGCTCCCGAGTTCTATCCCAGAGTGTGGGGCAGCTTCTCATGGGTaGATGAGTTCGAGGGCCCGG +
Preference number: 4 (lower is better)
Translates to: FPCKCGWPWLPSSIPECGAASHG*MSSRAR
Trigger: CCGGGCCCTCGAACTCATCCACCCATGAGAAGCTGC...CCCACACTCTGGGATAGAACTCGGGAGCCACGGCCACCCACACTTGCATGGGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
3UTR CAA 72 bp TGGCTTAGAGCAGTGGCCCACGCTCTCAACTCCATCTaGGCATGGACTCTCCTGAAGGGGTTTGGGCCCCGC +
Preference number: 4 (lower is better)
Translates to: WLRAVAHALNSI*AWTLLKGFGPR
Trigger: GCGGGGCCCAAACCCCTTCAGGAGAGTCCATGCCAAGATGGAGTTGAGAGCGTGGGCCACTGCTCTAAGCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
CDS-3UTR TCA 90 bp CCAGTCCAGAAGCCACTGCTGGGGCAGAGGGCAGTGTCCTGGAAGACTTGCATGTGGCCACCTCCACCATaGTGCTGTTGCCACTCTTGG +
Preference number: 4 (lower is better)
Translates to: PVQKPLLGQRAVSWKTCMWPPPP*CCCHSW
Trigger: CCAAGAGTGGCAACAGCATCATGGTGGAGGTGGCCA...CATGCAAGTCTTCCAGGACACTGCCCTCTGCCCCAGCAGTGGCTTCTGGACTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
CDS-3UTR GCA 90 bp GTGCCCACAGACAGGCCCCTCGAGGCTGCTCCCAACATAGGAACCTGCTTGTTGAGTGACACAGAAGAGTaGCAGCAGCAGCATGCGGGC +
Preference number: 4 (lower is better)
Translates to: VPTDRPLEAAPNIGTCLLSDTEE*QQQHAG
Trigger: GCCCGCATGCTGCTGCTGGCACTCTTCTGTGTCACT...CAACAAGCAGGTTCCTATGTTGGGAGCAGCCTCGAGGGGCCTGTCTGTGGGCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
CDS-3UTR GCA 90 bp GGCAGAACCCACACAGGTGCAGGACACTTAGAGCAGGAGGCATTCAGCAACCACGCCACAGAGCCACGGTaGAGCTGGTCAGCAGTGTGC +
Preference number: 4 (lower is better)
Translates to: GRTHTGAGHLEQEAFSNHATEPR*SWSAVC
Trigger: GCACACTGCTGACCAGCTGCACCGTGGCTCTGTGGC...GTGGTTGCTGAATGCCTCCTGCTCTAAGTGTCCTGCACCTGTGTGGGTTCTGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218789.2
CDS-3UTR CCA 90 bp TCCATCTTGGCATGGACTCTCCTGAAGGGGTTTGGGCCCCGCGGGCAGAGTGCCCAAGTGGGCCCACTGTaGGTTGTAGAGGATGCAGTA +
Preference number: 4 (lower is better)
Translates to: SILAWTLLKGFGPRGQSAQVGPL*VVEDAV
Trigger: TACTGCATCCTCTACAACCCACAGTGGGCCCACTTG...GGCACTCTGCCCGCGGGGCCCAAACCCCTTCAGGAGAGTCCATGCCAAGATGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035597.10
CDS-3UTR CCA 90 bp CAGAGCCCCCTGGAAGACGTACCCAAGAAGCAAGGCTCATCTTGGGGAGCCACGAGCTGTAGAGACCGGTaGAGGAGGCCAGGCAGAAGA +
Preference number: 4 (lower is better)
Translates to: QSPLEDVPKKQGSSWGATSCRDR*RRPGRR
Trigger: TCTTCTGCCTGGCCTCCTCCACCGGTCTCTACAGCT...CGTGGCTCCCCAAGATGAGCCTTGCTTCTTGGGTACGTCTTCCAGGGGGCTCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000218789.2
ENSMUST00000220091.2
CDS-3UTR CCA 90 bp CCCAGCTGTCCCTGCTTGTCATCCTGCAGCAGACACCCTTTCCCATGCAAGTGTCAGCATGCGGGCCTGTaGGCGCTTGTGGAAGTACGG +
Preference number: 4 (lower is better)
Translates to: PSCPCLSSCSRHPFPCKCQHAGL*ALVEVR
Trigger: CCGTACTTCCACAAGCGCCCACAGGCCCGCATGCTG...ACACTTGCATGGGAAAGGGTGTCTGCTGCAGGATGACAAGCAGGGACAGCTGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
CDS-3UTR CCA 90 bp GGTGGGCACTCCCCATCCCCTCACAGCCCTTCAATGTACCCTCCATCCTCTTCAGCGAGGTGTTCAGCCTaGGCACCTTCAGCACCATGG +
Preference number: 4 (lower is better)
Translates to: GGHSPSPHSPSMYPPSSSARCSA*APSAPW
Trigger: CCATGGTGCTGAAGGTGCCCAGGCTGAACACCTCGC...TGAAGAGGATGGAGGGTACATTGAAGGGCTGTGAGGGGATGGGGAGTGCCCACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218789.2
CDS-3UTR CCA 90 bp CAGTCCAGAAGCCACTGCTGGGGCAGAGGGCAGTGTCCTGGAAGACTTGCATGTGTCACACAGGGAGAGTaGCGAGGTGTTCAGCCTGGG +
Preference number: 4 (lower is better)
Translates to: QSRSHCWGRGQCPGRLACVTQGE*RGVQPG
Trigger: CCCAGGCTGAACACCTCGCCACTCTCCCTGTGTGAC...ACATGCAAGTCTTCCAGGACACTGCCCTCTGCCCCAGCAGTGGCTTCTGGACTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
CDS-3UTR CCA 90 bp GGTGGGCACTCCCCATCCCCTCACAGCCCTTCAATGTACCCTCCATCCTCTTCAGAGCCACGGTGCAGCTaGTCAGCAGTGTGCAAGGGA +
Preference number: 4 (lower is better)
Translates to: GGHSPSPHSPSMYPPSSSEPRCS*SAVCKG
Trigger: TCCCTTGCACACTGCTGACCAGCTGCACCGTGGCTC...TGAAGAGGATGGAGGGTACATTGAAGGGCTGTGAGGGGATGGGGAGTGCCCACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218789.2
3UTR CAA 72 bp CCCAGAGCTCTAGGAGGACCACCCAGCTGTCCCTGCTaGTCATCCTGCAGCAGACACCCTTTCCCATGCAAG +
Preference number: 4 (lower is better)
Translates to: PRALGGPPSCPC*SSCSRHPFPCK
Trigger: CTTGCATGGGAAAGGGTGTCTGCTGCAGGATGACAAGCAGGGACAGCTGGGTGGTCCTCCTAGAGCTCTGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
CDS-3UTR TCA 90 bp TTCCCATGCAAGTGTGGGTGGCCGTGGCTCCCGAGTTCTATCCCAGAGTGTGGGCGCCTGAAGATGTCTTaGAGGTCTCTGTGGCTCAGC +
Preference number: 4 (lower is better)
Translates to: FPCKCGWPWLPSSIPECGRLKMS*RSLWLS
Trigger: GCTGAGCCACAGAGACCTTCAAGACATCTTCAGGCG...CCCACACTCTGGGATAGAACTCGGGAGCCACGGCCACCCACACTTGCATGGGAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
CDS-3UTR TCA 90 bp GGCCCACGCTCTCAACTCCATCTTGGCATGGACTCTCCTGAAGGGGTTTGGGCCCGCCTGAAGATGTCTTaGAGGTCTCTGTGGCTCAGC +
Preference number: 4 (lower is better)
Translates to: GPRSQLHLGMDSPEGVWARLKMS*RSLWLS
Trigger: GCTGAGCCACAGAGACCTTCAAGACATCTTCAGGCG...GGCCCAAACCCCTTCAGGAGAGTCCATGCCAAGATGGAGTTGAGAGCGTGGGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
CDS-3UTR TCA 90 bp CCTTGCATGGAGTGGGCAGCAGATGAAGCTCACGGCCTGGTGCAAAGCAGAGCTTGGCCACCTCCACCATaGTGCTGTTGCCACTCTTGG +
Preference number: 4 (lower is better)
Translates to: PCMEWAADEAHGLVQSRAWPPPP*CCCHSW
Trigger: CCAAGAGTGGCAACAGCATCATGGTGGAGGTGGCCA...AGCTCTGCTTTGCACCAGGCCGTGAGCTTCATCTGCTGCCCACTCCATGCAAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
CDS-3UTR CCA 90 bp ACCCTTTCCCATGCAAGTGTGGGTGGCCGTGGCTCCCGAGTTCTATCCCAGAGTAGCTGTAGAGACCGGTaGAGGAGGCCAGGCAGAAGA +
Preference number: 4 (lower is better)
Translates to: TLSHASVGGRGSRVLSQSSCRDR*RRPGRR
Trigger: TCTTCTGCCTGGCCTCCTCCACCGGTCTCTACAGCT...ACTCTGGGATAGAACTCGGGAGCCACGGCCACCCACACTTGCATGGGAAAGGGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
CDS-3UTR CCA 90 bp TCCAGAAGCCACTGCTGGGGCAGAGGGCAGTGTCCTGGAAGACTTGCATGTCTGGCACCTTCAGCACCATaGGCAGCTTCTCATGGGTGG +
Preference number: 4 (lower is better)
Translates to: SRSHCWGRGQCPGRLACLAPSAP*AASHGW
Trigger: CCACCCATGAGAAGCTGCCCATGGTGCTGAAGGTGC...CAGACATGCAAGTCTTCCAGGACACTGCCCTCTGCCCCAGCAGTGGCTTCTGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
CDS-3UTR CCA 90 bp CCCAGCTGTCCCTGCTTGTCATCCTGCAGCAGACACCCTTTCCCATGCAAGTGTGCGAGGTGTTCAGCCTaGGCACCTTCAGCACCATGG +
Preference number: 4 (lower is better)
Translates to: PSCPCLSSCSRHPFPCKCARCSA*APSAPW
Trigger: CCATGGTGCTGAAGGTGCCCAGGCTGAACACCTCGC...ACACTTGCATGGGAAAGGGTGTCTGCTGCAGGATGACAAGCAGGGACAGCTGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
CDS-3UTR CCA 90 bp CTGGAGCTGGAGCCATTTACTGGCTTAGAGCAGTGGCCCACGCTCTCAACTCCAGTCACACAGGGAGAGTaGCGAGGTGTTCAGCCTGGG +
Preference number: 4 (lower is better)
Translates to: LELEPFTGLEQWPTLSTPVTQGE*RGVQPG
Trigger: CCCAGGCTGAACACCTCGCCACTCTCCCTGTGTGAC...TGGAGTTGAGAGCGTGGGCCACTGCTCTAAGCCAGTAAATGGCTCCAGCTCCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
CDS-3UTR GCA 90 bp CACCAAGGAAGTCCCAGAGCACAGAGCCCCCTGGAAGACGTACCCAAGAAGCAAAGTGACACAGAAGAGTaGCAGCAGCAGCATGCGGGC +
Preference number: 4 (lower is better)
Translates to: HQGSPRAQSPLEDVPKKQSDTEE*QQQHAG
Trigger: GCCCGCATGCTGCTGCTGGCACTCTTCTGTGTCACT...TTGCTTCTTGGGTACGTCTTCCAGGGGGCTCTGTGCTCTGGGACTTCCTTGGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000218789.2
ENSMUST00000220091.2
CDS-3UTR GCA 90 bp TTTCCCATGCAAGTGTGGGTGGCCGTGGCTCCCGAGTTCTATCCCAGAGTGTGGACAGGCAGAAGGCAATaGCCAGGGTGTCTTGCAGGA +
Preference number: 4 (lower is better)
Translates to: FPMQVWVAVAPEFYPRVWTGRRQ*PGCLAG
Trigger: TCCTGCAAGACACCCTGGGCATTGCCTTCTGCCTGT...CCACACTCTGGGATAGAACTCGGGAGCCACGGCCACCCACACTTGCATGGGAAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
CDS-3UTR GCA 90 bp AGTGCCCACAGACAGGCCCCTCGAGGCTGCTCCCAACATAGGAACCTGCTTGTTACAGGCAGAAGGCAATaGCCAGGGTGTCTTGCAGGA +
Preference number: 4 (lower is better)
Translates to: SAHRQAPRGCSQHRNLLVTGRRQ*PGCLAG
Trigger: TCCTGCAAGACACCCTGGGCATTGCCTTCTGCCTGT...AACAAGCAGGTTCCTATGTTGGGAGCAGCCTCGAGGGGCCTGTCTGTGGGCACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
CDS-3UTR CCA 90 bp CTGGTTGGTGAGGTAGAGGACAGATGCCAGTCCAGAAGCCACTGCTGGGGCAGATTTGCTGAGGTCATGTaGCAAGTGGGCCCACTGTGG +
Preference number: 4 (lower is better)
Translates to: LVGEVEDRCQSRSHCWGRFAEVM*QVGPLW
Trigger: CCACAGTGGGCCCACTTGCCACATGACCTCAGCAAA...TCTGCCCCAGCAGTGGCTTCTGGACTGGCATCTGTCCTCTACCTCACCAACCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035597.10
CDS-3UTR CCA 90 bp CCACTCAGCACCCAGGGCAGCAAGTGCTCTCCATCTCACGCCTCCCCAGTGCTCCCAGGCCATAGGCAATaGTACAGGCCACAAAGTAAA +
Preference number: 4 (lower is better)
Translates to: PLSTQGSKCSPSHASPVLPGHRQ*YRPQSK
Trigger: TTTACTTTGTGGCCTGTACCATTGCCTATGGCCTGG...GAGCACTGGGGAGGCGTGAGATGGAGAGCACTTGCTGCCCTGGGTGCTGAGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000218789.2
ENSMUST00000220091.2
CDS-3UTR CCA 90 bp CGTGGCTCCCGAGTTCTATCCCAGAGTGTGGGGACTGTGGCCTCTGCCTCGGTGCCAGGCCATAGGCAATaGTACAGGCCACAAAGTAAA +
Preference number: 4 (lower is better)
Translates to: RGSRVLSQSVGTVASASVPGHRQ*YRPQSK
Trigger: TTTACTTTGTGGCCTGTACCATTGCCTATGGCCTGG...CACCGAGGCAGAGGCCACAGTCCCCACACTCTGGGATAGAACTCGGGAGCCACG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
CDS-3UTR TCA 90 bp CCCAGCTGTCCCTGCTTGTCATCCTGCAGCAGACACCCTTTCCCATGCAAGTGTGGAGAGACACTTTGCTaGGGTCATGTGGCAAGTGGG +
Preference number: 4 (lower is better)
Translates to: PSCPCLSSCSRHPFPCKCGETLC*GHVASG
Trigger: CCCACTTGCCACATGACCTCAGCAAAGTGTCTCTCC...ACACTTGCATGGGAAAGGGTGTCTGCTGCAGGATGACAAGCAGGGACAGCTGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035597.10
CDS-3UTR CCA 90 bp GTGGCCCACGCTCTCAACTCCATCTTGGCATGGACTCTCCTGAAGGGGTTTGGGTGTCTTGTTGCCTCCTaGAGGGACCAGCTTCTCCTT +
Preference number: 4 (lower is better)
Translates to: VAHALNSILAWTLLKGFGCLVAS*RDQLLL
Trigger: AAGGAGAAGCTGGTCCCTCCAGGAGGCAACAAGACA...CCCAAACCCCTTCAGGAGAGTCCATGCCAAGATGGAGTTGAGAGCGTGGGCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035597.10
CDS-3UTR CCA 90 bp GTGGCCCACGCTCTCAACTCCATCTTGGCATGGACTCTCCTGAAGGGGTTTGGGGTTGTAGTCCATCACTaGCTCGCTCGGAGCATACAG +
Preference number: 4 (lower is better)
Translates to: VAHALNSILAWTLLKGFGVVVHH*LARSIQ
Trigger: CTGTATGCTCCGAGCGAGCCAGTGATGGACTACAAC...CCCAAACCCCTTCAGGAGAGTCCATGCCAAGATGGAGTTGAGAGCGTGGGCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
CDS-3UTR CCA 90 bp AGCAATGCGGCAGGAGTGTTCAAAGCCTTAGGTCACACCAGAGAGTTCCCCACACACGCAGATCATGACTaGCGTCACGTCCACCGCCTC +
Preference number: 4 (lower is better)
Translates to: SNAAGVFKALGHTREFPTHADHD*RHVHRL
Trigger: GAGGCGGTGGACGTGACGCCAGTCATGATCTGCGTG...TGTGGGGAACTCTCTGGTGTGACCTAAGGCTTTGAACACTCCTGCCGCATTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000218789.2
ENSMUST00000220091.2
CDS-3UTR CCA 90 bp GAGCATCGGCCGAGCACTGTGGGCAGCGGCCTTGCATGGAGTGGGCAGCAGATGCCACAAAGTAAATTCTaGAGGACTGCACCTGGATAT +
Preference number: 4 (lower is better)
Translates to: EHRPSTVGSGLAWSGQQMPQSKF*RTAPGY
Trigger: ATATCCAGGTGCAGTCCTCCAGAATTTACTTTGTGG...CATCTGCTGCCCACTCCATGCAAGGCCGCTGCCCACAGTGCTCGGCCGATGCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
CDS-3UTR CCA 90 bp CCAGTCCAGAAGCCACTGCTGGGGCAGAGGGCAGTGTCCTGGAAGACTTGCATGCCAGGCCATAGGCAATaGTACAGGCCACAAAGTAAA +
Preference number: 4 (lower is better)
Translates to: PVQKPLLGQRAVSWKTCMPGHRQ*YRPQSK
Trigger: TTTACTTTGTGGCCTGTACCATTGCCTATGGCCTGG...CATGCAAGTCTTCCAGGACACTGCCCTCTGCCCCAGCAGTGGCTTCTGGACTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
CDS-3UTR TCA 90 bp AAGCAGAGCTGGGCGCGGGGTGCAGCTGGGAGAATCTACTTGAGGCCTCAGAGGAGAGAAGCACAAGCATaGAGCAGCACATTACAACAA +
Preference number: 4 (lower is better)
Translates to: KQSWARGAAGRIYLRPQRREAQA*SSTLQQ
Trigger: TTGTTGTAATGTGCTGCTTCATGCTTGTGCTTCTCT...CCTCTGAGGCCTCAAGTAGATTCTCCCAGCTGCACCCCGCGCCCAGCTCTGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
CDS-3UTR GCA 90 bp CCCAACATAGGAACCTGCTTGTTGGGGTTGCTCTGGCCCCAGAGCCCAGCCCTGCCATCGTCTCGCTTATaGTTCATGTACCTTTTCTTC +
Preference number: 4 (lower is better)
Translates to: PNIGTCLLGLLWPQSPALPSSRL*FMYLFF
Trigger: GAAGAAAAGGTACATGAAGCATAAGCGAGACGATGG...CAGGGCTGGGCTCTGGGGCCAGAGCAACCCCAACAAGCAGGTTCCTATGTTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000220091.2
CDS-3UTR CCA 90 bp CTCCGGCCTCCTCAGTGGACAGGGGGCTCTTGGCTAGCTCTTCACTTGGAGGCTCCACAAAGTAAATTCTaGAGGACTGCACCTGGATAT +
Preference number: 4 (lower is better)
Translates to: LRPPQWTGGSWLALHLEAPQSKF*RTAPGY
Trigger: ATATCCAGGTGCAGTCCTCCAGAATTTACTTTGTGG...AGCCTCCAAGTGAAGAGCTAGCCAAGAGCCCCCTGTCCACTGAGGAGGCCGGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000218789.2
ENSMUST00000220091.2
CDS-3UTR CCA 90 bp TGCACAGCGCAGGACCTGGAGCTGGAGCCATTTACTGGCTTAGAGCAGTGGCCCCCACAAAGTAAATTCTaGAGGACTGCACCTGGATAT +
Preference number: 4 (lower is better)
Translates to: CTAQDLELEPFTGLEQWPPQSKF*RTAPGY
Trigger: ATATCCAGGTGCAGTCCTCCAGAATTTACTTTGTGG...GGGCCACTGCTCTAAGCCAGTAAATGGCTCCAGCTCCAGGTCCTGCGCTGTGCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
CDS-3UTR TCA 90 bp AGTGCCCACAGACAGGCCCCTCGAGGCTGCTCCCAACATAGGAACCTGCTTGTTAGAGAAGCACAAGCATaGAGCAGCACATTACAACAA +
Preference number: 4 (lower is better)
Translates to: SAHRQAPRGCSQHRNLLVREAQA*SSTLQQ
Trigger: TTGTTGTAATGTGCTGCTTCATGCTTGTGCTTCTCT...AACAAGCAGGTTCCTATGTTGGGAGCAGCCTCGAGGGGCCTGTCTGTGGGCACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
CDS-3UTR TCA 90 bp TACTGGCTTAGAGCAGTGGCCCACGCTCTCAACTCCATCTTGGCATGGACTCTCAGAGAAGCACAAGCATaGAGCAGCACATTACAACAA +
Preference number: 4 (lower is better)
Translates to: YWLRAVAHALNSILAWTLREAQA*SSTLQQ
Trigger: TTGTTGTAATGTGCTGCTTCATGCTTGTGCTTCTCT...GAGAGTCCATGCCAAGATGGAGTTGAGAGCGTGGGCCACTGCTCTAAGCCAGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
CDS GCA 90 bp GGGTTGCGGCCCACGGGGTCTGAGGTGCATCCTTCGCAAAACCGCTaGCCGTCCAGAAGGCACCCAGCTCCCGGCGCCACAGAGCCACGG +
Preference number: 5 (lower is better)
Translates to: GLRPTGSEVHPSQNR*PSRRHPAPGATEPR
Trigger: CCGTGGCTCTGTGGCGCCGGGAGCTGGGTGCCTTCTGGACGGGCAGCGGTTTTGCGAAGGATGCACCTCAGACCCCGTGGGCCGCAACCC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035597.10
CDS CCA 90 bp CTGGTTTGGGACACCACTCGAAGCACGCCGAACTCACAGGCCACCTaGGCCGCGAGTAGCAGCAAAGCTGCGGCCAGCCGCGCCGCGGCC +
Preference number: 5 (lower is better)
Translates to: LVWDTTRSTPNSQAT*AASSSKAAASRAAA
Trigger: GGCCGCGGCGCGGCTGGCCGCAGCTTTGCTGCTACTCGCGGCCCAGGTGGCCTGTGAGTTCGGCGTGCTTCGAGTGGTGTCCCAAACCAG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035597.10
CDS TCA 90 bp ACAGCCTTCGGAGGCACAGGTCCCTGGGTTGCGGCCCACGGGGTCTaGGGTGCATCCTTCGCAAAACCGCTGCCCGTCCAGAAGGCACCC +
Preference number: 5 (lower is better)
Translates to: TAFGGTGPWVAAHGV*GASFAKPLPVQKAP
Trigger: GGGTGCCTTCTGGACGGGCAGCGGTTTTGCGAAGGATGCACCTCAGACCCCGTGGGCCGCAACCCAGGGACCTGTGCCTCCGAAGGCTGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035597.10
CDS GCA 90 bp CTTCGGAGGCACAGGTCCCTGGGTTGCGGCCCACGGGGTCTGAGGTaGATCCTTCGCAAAACCGCTGCCCGTCCAGAAGGCACCCAGCTC +
Preference number: 5 (lower is better)
Translates to: LRRHRSLGCGPRGLR*ILRKTAARPEGTQL
Trigger: GAGCTGGGTGCCTTCTGGACGGGCAGCGGTTTTGCGAAGGATGCACCTCAGACCCCGTGGGCCGCAACCCAGGGACCTGTGCCTCCGAAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035597.10
CDS GCA 90 bp GTGACACAGAAGAGTGCCAGCAGCAGCATGCGGGCCTGTGGGCGCTaGACGTGCAGAAGGGCAGCTTCCGCACAAAGGGTGCCAGACAGC +
Preference number: 5 (lower is better)
Translates to: VTQKSASSSMRACGR*TCRRAASAQRVPDS
Trigger: GCTGTCTGGCACCCTTTGTGCGGAAGCTGCCCTTCTGCACGTGCAGCGCCCACAGGCCCGCATGCTGCTGCTGGCACTCTTCTGTGTCAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219951.2
CDS CCA 90 bp GGAGACAGTGACACAGAAGAGTGCCAGCAGCAGCATGCGGGCCTGTaGGCGCTGCACGTGCAGAAGGGCAGCTTCCGCACAAAGGGTGCC +
Preference number: 5 (lower is better)
Translates to: GDSDTEECQQQHAGL*ALHVQKGSFRTKGA
Trigger: GGCACCCTTTGTGCGGAAGCTGCCCTTCTGCACGTGCAGCGCCCACAGGCCCGCATGCTGCTGCTGGCACTCTTCTGTGTCACTGTCTCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219951.2
CDS GCA 90 bp CCTGTGGGCGCTTGTGGAAGTACGGCAGGTTGTTGTCGGGGACCCTaGACGTGCAGAAGGGCAGCTTCCGCACAAAGGGTGCCAGACAGC +
Preference number: 5 (lower is better)
Translates to: PVGACGSTAGCCRGP*TCRRAASAQRVPDS
Trigger: GCTGTCTGGCACCCTTTGTGCGGAAGCTGCCCTTCTGCACGTGCAGGGTCCCCGACAACAACCTGCCGTACTTCCACAAGCGCCCACAGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
CDS CCA 90 bp ACAGGGAGAGTGGCGAGGTGTTCAGCCTGGGCACCTTCAGCACCATaGGCAGCTTCTCATGGGTGGATGAGTTCGAGGGCCCGGTGGCCA +
Preference number: 5 (lower is better)
Translates to: TGRVARCSAWAPSAP*AASHGWMSSRARWP
Trigger: TGGCCACCGGGCCCTCGAACTCATCCACCCATGAGAAGCTGCCCATGGTGCTGAAGGTGCCCAGGCTGAACACCTCGCCACTCTCCCTGT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000219951.2
CDS-3UTR CAA 90 bp AGCATCTGCAGGGTGAGCATCGGCCGAGCACTGTGGGCAGCGGCCTTGCATGGATGGCTAGCTCTTCACTaGGAGGCTGCTCGGAGAGGG +
Preference number: 5 (lower is better)
Translates to: SICRVSIGRALWAAALHGWLALH*EAARRG
Trigger: CCCTCTCCGAGCAGCCTCCAAGTGAAGAGCTAGCCA...TCCATGCAAGGCCGCTGCCCACAGTGCTCGGCCGATGCTCACCCTGCAGATGCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035597.10
CDS TCA 90 bp CATACTGTGTCTTGTTGCCTCCTGGAGGGACCAGCTTCTCCTTGCTaGCTATCAGCAGCCCGTGAGCCCCACTGCCCTGGGCCAGCCGCA +
Preference number: 5 (lower is better)
Translates to: HTVSCCLLEGPASPC*LSAAREPHCPGPAA
Trigger: TGCGGCTGGCCCAGGGCAGTGGGGCTCACGGGCTGCTGATAGTCAGCAAGGAGAAGCTGGTCCCTCCAGGAGGCAACAAGACACAGTATG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035597.10
ENSMUST00000219614.2
CDS TCA 90 bp GTGTGCAAGGGACCAGGTAGAGTAGTGCAGGCTGGCCACGCTGCATaGGGACAAGAGCCACGAAGGTCACCAGGAGGCCCAGGCCATAGG +
Preference number: 5 (lower is better)
Translates to: VCKGPGRVVQAGHAA*GQEPRRSPGGPGHR
Trigger: CCTATGGCCTGGGCCTCCTGGTGACCTTCGTGGCTCTTGTCCTCATGCAGCGTGGCCAGCCTGCACTACTCTACCTGGTCCCTTGCACAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000219951.2
CDS CCA 90 bp ACACAGAAGAGTGCCAGCAGCAGCATGCGGGCCTGTGGGCGCTTGTaGAAGTACGGCAGGTTGTTGTCGGGGACCCTGCACGTGCAGAAG +
Preference number: 5 (lower is better)
Translates to: TQKSASSSMRACGRL*KYGRLLSGTLHVQK
Trigger: CTTCTGCACGTGCAGGGTCCCCGACAACAACCTGCCGTACTTCCACAAGCGCCCACAGGCCCGCATGCTGCTGCTGGCACTCTTCTGTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
CDS GCA 90 bp GGCGCTTGTGGAAGTACGGCAGGTTGTTGTCGGGGACCCTGCACGTaGAGAAGGGCAGCTTCCGCACAAAGGGTGCCAGACAGCTGTAGA +
Preference number: 5 (lower is better)
Translates to: GACGSTAGCCRGPCT*RRAASAQRVPDSCR
Trigger: TCTACAGCTGTCTGGCACCCTTTGTGCGGAAGCTGCCCTTCTGCACGTGCAGGGTCCCCGACAACAACCTGCCGTACTTCCACAAGCGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
CDS GCA 90 bp CATGTACAGGCAGAAGGCAATGCCCAGGGTGTCTTGCAGGACCCATaGCCACCTGCACGTGCAGAAGGGCAGCTTCCGCACAAAGGGTGC +
Preference number: 5 (lower is better)
Translates to: HVQAEGNAQGVLQDP*PPARAEGQLPHKGC
Trigger: GCACCCTTTGTGCGGAAGCTGCCCTTCTGCACGTGCAGGTGGGCATGGGTCCTGCAAGACACCCTGGGCATTGCCTTCTGCCTGTACATG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219614.2
CDS-3UTR CAA 90 bp AGCTGTCCCTGTCCCCTGCAGGTCCCAGGTGGTCAGCATCTGTGTGGCGTGGAACCGAGTCCTACTGGTTaGGGACACCACTCGAAGCAC +
Preference number: 5 (lower is better)
Translates to: SCPCPLQVPGGQHLCGVEPSPTG*GHHSKH
Trigger: GTGCTTCGAGTGGTGTCCCAAACCAGTAGGACTCGG...TTCCACGCCACACAGATGCTGACCACCTGGGACCTGCAGGGGACAGGGACAGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035597.10
CDS-3UTR CAA 90 bp TCCATCTTGGCATGGACTCTCCTGAAGGGGTTTGGGCCCCGCGGGCAGAGTGCCTCCTCATACTGTGTCTaGTTGCCTCCTGGAGGGACC +
Preference number: 5 (lower is better)
Translates to: SILAWTLLKGFGPRGQSASSYCV*LPPGGT
Trigger: GGTCCCTCCAGGAGGCAACAAGACACAGTATGAGGA...GGCACTCTGCCCGCGGGGCCCAAACCCCTTCAGGAGAGTCCATGCCAAGATGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035597.10
CDS-3UTR CAA 90 bp TCCATCTTGGCATGGACTCTCCTGAAGGGGTTTGGGCCCCGCGGGCAGAGTGCCATGCTGTTGCCACTCTaGGTCAGGAAGGGGGTGATG +
Preference number: 5 (lower is better)
Translates to: SILAWTLLKGFGPRGQSAMLLPL*VRKGVM
Trigger: CATCACCCCCTTCCTGACCAAGAGTGGCAACAGCAT...GGCACTCTGCCCGCGGGGCCCAAACCCCTTCAGGAGAGTCCATGCCAAGATGGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
CDS-3UTR CAA 90 bp CATGCAGCATGTGTGCTGGGCTCCCTGCAGGCAGATCTGTCATGGAGTCCAGAGGGACTGGCCACAGGGTaGTCAGGATCCTTGGCAGGG +
Preference number: 5 (lower is better)
Translates to: HAACVLGSLQADLSWSPEGLATG*SGSLAG
Trigger: CCCTGCCAAGGATCCTGACAACCCTGTGGCCAGTCC...CTCTGGACTCCATGACAGATCTGCCTGCAGGGAGCCCAGCACACATGCTGCATG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035597.10
CDS GCA 90 bp GTGGCAAGTGGGCCCACTGTGGGTTGTAGAGGATGCAGTAGTCCCTaGTCCGAGTCCTACTGGTTTGGGACACCACTCGAAGCACGCCGA +
Preference number: 5 (lower is better)
Translates to: VASGPTVGCRGCSSP*SESYWFGTPLEARR
Trigger: TCGGCGTGCTTCGAGTGGTGTCCCAAACCAGTAGGACTCGGAGCAGGGACTACTGCATCCTCTACAACCCACAGTGGGCCCACTTGCCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035597.10
CDS GCA 90 bp ATTTCGGAAGATACCCCACACCACGGAGACAGTGACACAGAAGAGTaGCAGCAGCAGCATGCGGGCCTGTGGGCGCTGCACGTGCAGAAG +
Preference number: 5 (lower is better)
Translates to: ISEDTPHHGDSDTEE*QQQHAGLWALHVQK
Trigger: CTTCTGCACGTGCAGCGCCCACAGGCCCGCATGCTGCTGCTGGCACTCTTCTGTGTCACTGTCTCCGTGGTGTGGGGTATCTTCCGAAAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219951.2
CDS GCA 90 bp ATGGTCTTCAGCATGTACAGGCAGAAGGCAATGCCCAGGGTGTCTTaGAGGACCCATGCCCACCTGCACGTGCAGAAGGGCAGCTTCCGC +
Preference number: 5 (lower is better)
Translates to: MVFSMYRQKAMPRVS*RTHAHLHVQKGSFR
Trigger: GCGGAAGCTGCCCTTCTGCACGTGCAGGTGGGCATGGGTCCTGCAAGACACCCTGGGCATTGCCTTCTGCCTGTACATGCTGAAGACCAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219614.2
CDS GCA 90 bp ATTTCGGAAGATACCCCACACCACGGAGACAGTGACACAGAAGAGTaGCAGCAGCAGCATGCGGGCCTGTGGGCGCTTGTGGAAGTACGG +
Preference number: 5 (lower is better)
Translates to: ISEDTPHHGDSDTEE*QQQHAGLWALVEVR
Trigger: CCGTACTTCCACAAGCGCCCACAGGCCCGCATGCTGCTGCTGGCACTCTTCTGTGTCACTGTCTCCGTGGTGTGGGGTATCTTCCGAAAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
CDS-3UTR CAA 90 bp GGCTCCCGAGTTCTATCCCAGAGTGTGGGGACTGTGGCCTCTGCCTCGGTGACAACCAGTGCGATTTGGTaGGTGAAGTCTTCTGCAGGG +
Preference number: 5 (lower is better)
Translates to: GSRVLSQSVGTVASASVTTSAIW*VKSSAG
Trigger: CCCTGCAGAAGACTTCACCAACCAAATCGCACTGGT...TGTCACCGAGGCAGAGGCCACAGTCCCCACACTCTGGGATAGAACTCGGGAGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035597.10
CDS-3UTR CAA 90 bp CCCAACATAGGAACCTGCTTGTTGGGGTTGCTCTGGCCCCAGAGCCCAGCCCTGTTCAGGAGAGACACTTaGCTGAGGTCATGTGGCAAG +
Preference number: 5 (lower is better)
Translates to: PNIGTCLLGLLWPQSPALFRRDT*LRSCGK
Trigger: CTTGCCACATGACCTCAGCAAAGTGTCTCTCCTGAA...CAGGGCTGGGCTCTGGGGCCAGAGCAACCCCAACAAGCAGGTTCCTATGTTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035597.10
CDS TCA 90 bp GCTGGGTGGTGCTCAAGTCTCGAAGCTTCAGGAGAGACACTTTGCTaGGGTCATGTGGCAAGTGGGCCCACTGTGGGTTGTAGAGGATGC +
Preference number: 5 (lower is better)
Translates to: AGWCSSLEASGETLC*GHVASGPTVGCRGC
Trigger: GCATCCTCTACAACCCACAGTGGGCCCACTTGCCACATGACCTCAGCAAAGTGTCTCTCCTGAAGCTTCGAGACTTGAGCACCACCCAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035597.10
CDS CCA 90 bp CAGGAGAGACACTTTGCTGAGGTCATGTGGCAAGTGGGCCCACTGTaGGTTGTAGAGGATGCAGTAGTCCCTGCTCCGAGTCCTACTGGT +
Preference number: 5 (lower is better)
Translates to: QERHFAEVMWQVGPL*VVEDAVVPAPSPTG
Trigger: ACCAGTAGGACTCGGAGCAGGGACTACTGCATCCTCTACAACCCACAGTGGGCCCACTTGCCACATGACCTCAGCAAAGTGTCTCTCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035597.10
CDS CCA 90 bp GGCCACAGGGATGCTTATCTCCTCATACTGTGTCTTGTTGCCTCCTaGAGGGACCAGCTTCTCCTTGCTGACTATCAGCAGCCCGTGAGC +
Preference number: 5 (lower is better)
Translates to: GHRDAYLLILCLVAS*RDQLLLADYQQPVS
Trigger: GCTCACGGGCTGCTGATAGTCAGCAAGGAGAAGCTGGTCCCTCCAGGAGGCAACAAGACACAGTATGAGGAGATAAGCATCCCTGTGGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035597.10
ENSMUST00000219614.2
CDS TCA 90 bp TACAGTGCCACCATTACCTCACGGCCAAAGCGCCTGAAGATGTCTTaGAGGTCTCTGTGGCTCAGCAGGGCCACAGGGATGCTTATCTCC +
Preference number: 5 (lower is better)
Translates to: YSATITSRPKRLKMS*RSLWLSRATGMLIS
Trigger: GGAGATAAGCATCCCTGTGGCCCTGCTGAGCCACAGAGACCTTCAAGACATCTTCAGGCGCTTTGGCCGTGAGGTAATGGTGGCACTGTA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035597.10
ENSMUST00000219614.2
CDS GCA 90 bp CAGCCGCACTTTCTCATAGAAGGTACAGTTGCCCCGGGCCACCAGTaGGATTTGGTTGGTGAAGTCTTCTGCAGGGACGTCAAGGTAGGA +
Preference number: 5 (lower is better)
Translates to: QPHFLIEGTVAPGHQ*DLVGEVFCRDVKVG
Trigger: TCCTACCTTGACGTCCCTGCAGAAGACTTCACCAACCAAATCGCACTGGTGGCCCGGGGCAACTGTACCTTCTATGAGAAAGTGCGGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035597.10
CDS GCA 90 bp ATGGTCTTCAGCATGTACAGGCAGAAGGCAATGCCCAGGGTGTCTTaGAGGACCCATGCCCACTGGTCCTCATTTCGGAAGATACCCCAC +
Preference number: 5 (lower is better)
Translates to: MVFSMYRQKAMPRVS*RTHAHWSSFRKIPH
Trigger: GTGGGGTATCTTCCGAAATGAGGACCAGTGGGCATGGGTCCTGCAAGACACCCTGGGCATTGCCTTCTGCCTGTACATGCTGAAGACCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000219951.2
ENSMUST00000220091.2
CDS GCA 90 bp GATGACCATGTTGTAGTCCATCACTGGCTCGCTCGGAGCATACAGTaGCACCATTACCTCACGGCCAAAGCGCCTGAAGATGTCTTGAAG +
Preference number: 5 (lower is better)
Translates to: DDHVVVHHWLARSIQ*HHYLTAKAPEDVLK
Trigger: CTTCAAGACATCTTCAGGCGCTTTGGCCGTGAGGTAATGGTGGCACTGTATGCTCCGAGCGAGCCAGTGATGGACTACAACATGGTCATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000219614.2
CDS CCA 90 bp GGAGGCCCAGGCCATAGGCAATGGTACAGGCCACAAAGTAAATTCTaGAGGACTGCACCTGGATATCAAACCTGTGACAGTAGGCCACCA +
Preference number: 5 (lower is better)
Translates to: GGPGHRQWYRPQSKF*RTAPGYQTCDSRPP
Trigger: TGGTGGCCTACTGTCACAGGTTTGATATCCAGGTGCAGTCCTCCAGAATTTACTTTGTGGCCTGTACCATTGCCTATGGCCTGGGCCTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000219951.2
ENSMUST00000220091.2
CDS CCA 90 bp CACAAGCATGAAGCAGCACATTACAACAAACACGCAGATCATGACTaGCGTCACGTCCACCGCCTCATCCTCCTGTTTCTCAGGACCATC +
Preference number: 5 (lower is better)
Translates to: HKHEAAHYNKHADHD*RHVHRLILLFLRTI
Trigger: GATGGTCCTGAGAAACAGGAGGATGAGGCGGTGGACGTGACGCCAGTCATGATCTGCGTGTTTGTTGTAATGTGCTGCTTCATGCTTGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000219614.2
ENSMUST00000220091.2
CDS GCA 72 bp CCCACGGGGTCTGAGGTGCATCCTTCGCAAAACCGCTaGCCGTCCAGAAGGCACCCAGCTCCCGGCGCCACA +
Preference number: 6 (lower is better)
Translates to: PTGSEVHPSQNR*PSRRHPAPGAT
Trigger: TGTGGCGCCGGGAGCTGGGTGCCTTCTGGACGGGCAGCGGTTTTGCGAAGGATGCACCTCAGACCCCGTGGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035597.10
CDS GCA 72 bp CACAGGTCCCTGGGTTGCGGCCCACGGGGTCTGAGGTaGATCCTTCGCAAAACCGCTGCCCGTCCAGAAGGC +
Preference number: 6 (lower is better)
Translates to: HRSLGCGPRGLR*ILRKTAARPEG
Trigger: GCCTTCTGGACGGGCAGCGGTTTTGCGAAGGATGCACCTCAGACCCCGTGGGCCGCAACCCAGGGACCTGTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035597.10
CDS CCA 72 bp GACACAGAAGAGTGCCAGCAGCAGCATGCGGGCCTGTaGGCGCTGCACGTGCAGAAGGGCAGCTTCCGCACA +
Preference number: 6 (lower is better)
Translates to: DTEECQQQHAGL*ALHVQKGSFRT
Trigger: TGTGCGGAAGCTGCCCTTCTGCACGTGCAGCGCCCACAGGCCCGCATGCTGCTGCTGGCACTCTTCTGTGTC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219951.2
CDS CAA 72 bp CGGGCCTGTGGGCGCTTGTGGAAGTACGGCAGGTTGTaGTCGGGGACCCTGCACGTGCAGAAGGGCAGCTTC +
Preference number: 6 (lower is better)
Translates to: RACGRLWKYGRL*SGTLHVQKGSF
Trigger: GAAGCTGCCCTTCTGCACGTGCAGGGTCCCCGACAACAACCTGCCGTACTTCCACAAGCGCCCACAGGCCCG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
CDS CAA 72 bp ATGCGGGCCTGTGGGCGCTTGTGGAAGTACGGCAGGTaGTTGTCGGGGACCCTGCACGTGCAGAAGGGCAGC +
Preference number: 6 (lower is better)
Translates to: MRACGRLWKYGR*LSGTLHVQKGS
Trigger: GCTGCCCTTCTGCACGTGCAGGGTCCCCGACAACAACCTGCCGTACTTCCACAAGCGCCCACAGGCCCGCAT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
CDS CAA 90 bp AGCAGCAGCATGCGGGCCTGTGGGCGCTTGTGGAAGTACGGCAGGTaGTTGTCGGGGACCCTGCACGTGCAGAAGGGCAGCTTCCGCACA +
Preference number: 6 (lower is better)
Translates to: SSSMRACGRLWKYGR*LSGTLHVQKGSFRT
Trigger: TGTGCGGAAGCTGCCCTTCTGCACGTGCAGGGTCCCCGACAACAACCTGCCGTACTTCCACAAGCGCCCACAGGCCCGCATGCTGCTGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
CDS GCA 72 bp GATACCCCACACCACGGAGACAGTGACACAGAAGAGTaGCAGCAGCAGCATGCGGGCCTGTGGGCGCTGCAC +
Preference number: 6 (lower is better)
Translates to: DTPHHGDSDTEE*QQQHAGLWALH
Trigger: GTGCAGCGCCCACAGGCCCGCATGCTGCTGCTGGCACTCTTCTGTGTCACTGTCTCCGTGGTGTGGGGTATC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219951.2
CDS CAA 90 bp AGCAGCATGCGGGCCTGTGGGCGCTTGTGGAAGTACGGCAGGTTGTaGTCGGGGACCCTGCACGTGCAGAAGGGCAGCTTCCGCACAAAG +
Preference number: 6 (lower is better)
Translates to: SSMRACGRLWKYGRL*SGTLHVQKGSFRTK
Trigger: CTTTGTGCGGAAGCTGCCCTTCTGCACGTGCAGGGTCCCCGACAACAACCTGCCGTACTTCCACAAGCGCCCACAGGCCCGCATGCTGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
CDS CAA 90 bp GTGACACAGAAGAGTGCCAGCAGCAGCATGCGGGCCTGTGGGCGCTaGTGGAAGTACGGCAGGTTGTTGTCGGGGACCCTGCACGTGCAG +
Preference number: 6 (lower is better)
Translates to: VTQKSASSSMRACGR*WKYGRLLSGTLHVQ
Trigger: CTGCACGTGCAGGGTCCCCGACAACAACCTGCCGTACTTCCACAAGCGCCCACAGGCCCGCATGCTGCTGCTGGCACTCTTCTGTGTCAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
CDS TCA 72 bp TCTTGTTGCCTCCTGGAGGGACCAGCTTCTCCTTGCTaGCTATCAGCAGCCCGTGAGCCCCACTGCCCTGGG +
Preference number: 6 (lower is better)
Translates to: SCCLLEGPASPC*LSAAREPHCPG
Trigger: CCCAGGGCAGTGGGGCTCACGGGCTGCTGATAGTCAGCAAGGAGAAGCTGGTCCCTCCAGGAGGCAACAAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035597.10
ENSMUST00000219614.2
CDS TCA 72 bp GACAGTAGGCCACCAGCAGCCCTTCTCATGGGTGGATaGGTTCGAGGGCCCGGTGGCCACCTCCACCATGAT +
Preference number: 6 (lower is better)
Translates to: DSRPPAALLMGG*VRGPGGHLHHD
Trigger: ATCATGGTGGAGGTGGCCACCGGGCCCTCGAACTCATCCACCCATGAGAAGGGCTGCTGGTGGCCTACTGTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220091.2
CDS GCA 72 bp GGAAGTACGGCAGGTTGTTGTCGGGGACCCTGCACGTaGAGAAGGGCAGCTTCCGCACAAAGGGTGCCAGAC +
Preference number: 6 (lower is better)
Translates to: GSTAGCCRGPCT*RRAASAQRVPD
Trigger: GTCTGGCACCCTTTGTGCGGAAGCTGCCCTTCTGCACGTGCAGGGTCCCCGACAACAACCTGCCGTACTTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
CDS GCA 72 bp GATACCCCACACCACGGAGACAGTGACACAGAAGAGTaGCAGCAGCAGCATGCGGGCCTGTGGGCGCTTGTG +
Preference number: 6 (lower is better)
Translates to: DTPHHGDSDTEE*QQQHAGLWALV
Trigger: CACAAGCGCCCACAGGCCCGCATGCTGCTGCTGGCACTCTTCTGTGTCACTGTCTCCGTGGTGTGGGGTATC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
CDS GCA 72 bp GCTTGTGGAAGTACGGCAGGTTGTTGTCGGGGACCCTaGACGTGCAGAAGGGCAGCTTCCGCACAAAGGGTG +
Preference number: 6 (lower is better)
Translates to: ACGSTAGCCRGP*TCRRAASAQRV
Trigger: CACCCTTTGTGCGGAAGCTGCCCTTCTGCACGTGCAGGGTCCCCGACAACAACCTGCCGTACTTCCACAAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000220091.2
CDS GCA 72 bp GGCGGATGGTCTTCAGCATGTACAGGCAGAAGGCAATaGCCAGGGTGTCTTGCAGGACCCATGCCCACCTGC +
Preference number: 6 (lower is better)
Translates to: GGWSSACTGRRQ*PGCLAGPMPTC
Trigger: GCAGGTGGGCATGGGTCCTGCAAGACACCCTGGGCATTGCCTTCTGCCTGTACATGCTGAAGACCATCCGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219614.2
CDS CAA 90 bp TGGGTTGTAGAGGATGCAGTAGTCCCTGCTCCGAGTCCTACTGGTTaGGGACACCACTCGAAGCACGCCGAACTCACAGGCCACCTGGGC +
Preference number: 6 (lower is better)
Translates to: WVVEDAVVPAPSPTG*GHHSKHAELTGHLG
Trigger: GCCCAGGTGGCCTGTGAGTTCGGCGTGCTTCGAGTGGTGTCCCAAACCAGTAGGACTCGGAGCAGGGACTACTGCATCCTCTACAACCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035597.10
CDS GCA 72 bp GGGCCCACTGTGGGTTGTAGAGGATGCAGTAGTCCCTaGTCCGAGTCCTACTGGTTTGGGACACCACTCGAA +
Preference number: 6 (lower is better)
Translates to: GPTVGCRGCSSP*SESYWFGTPLE
Trigger: TTCGAGTGGTGTCCCAAACCAGTAGGACTCGGAGCAGGGACTACTGCATCCTCTACAACCCACAGTGGGCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035597.10
CDS TCA 72 bp ACCATTACCTCACGGCCAAAGCGCCTGAAGATGTCTTaGAGGTCTCTGTGGCTCAGCAGGGCCACAGGGATG +
Preference number: 6 (lower is better)
Translates to: TITSRPKRLKMS*RSLWLSRATGM
Trigger: CATCCCTGTGGCCCTGCTGAGCCACAGAGACCTTCAAGACATCTTCAGGCGCTTTGGCCGTGAGGTAATGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000219614.2
CDS GCA 72 bp CTCGCTTATGCTTCATGTACTTCTTCACATCATGGCTaGCAGCCCAGTAGCCACCGATGGCGACGGTGCCCA +
Preference number: 6 (lower is better)
Translates to: LAYASCTSSHHG*QPSSHRWRRCP
Trigger: TGGGCACCGTCGCCATCGGTGGCTACTGGGCTGGCAGCCATGATGTGAAGAAGTACATGAAGCATAAGCGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000219614.2
CDS CCA 72 bp TGTAGAGGATGCAGTAGTCCCTGCTCCGAGTCCTACTaGTTTGGGACACCACTCGAAGCACGCCGAACTCAC +
Preference number: 6 (lower is better)
Translates to: CRGCSSPCSESY*FGTPLEARRTH
Trigger: GTGAGTTCGGCGTGCTTCGAGTGGTGTCCCAAACCAGTAGGACTCGGAGCAGGGACTACTGCATCCTCTACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035597.10
CDS CCA 72 bp CACTTTGCTGAGGTCATGTGGCAAGTGGGCCCACTGTaGGTTGTAGAGGATGCAGTAGTCCCTGCTCCGAGT +
Preference number: 6 (lower is better)
Translates to: HFAEVMWQVGPL*VVEDAVVPAPS
Trigger: ACTCGGAGCAGGGACTACTGCATCCTCTACAACCCACAGTGGGCCCACTTGCCACATGACCTCAGCAAAGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035597.10
CDS CAA 90 bp CTCAGCAGGGCCACAGGGATGCTTATCTCCTCATACTGTGTCTTGTaGCCTCCTGGAGGGACCAGCTTCTCCTTGCTGACTATCAGCAGC +
Preference number: 6 (lower is better)
Translates to: LSRATGMLISSYCVL*PPGGTSFSLLTISS
Trigger: GCTGCTGATAGTCAGCAAGGAGAAGCTGGTCCCTCCAGGAGGCAACAAGACACAGTATGAGGAGATAAGCATCCCTGTGGCCCTGCTGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035597.10
ENSMUST00000219614.2
CDS TCA 72 bp CATACAGTGCCACCATTACCTCACGGCCAAAGCGCCTaGAGATGTCTTGAAGGTCTCTGTGGCTCAGCAGGG +
Preference number: 6 (lower is better)
Translates to: HTVPPLPHGQSA*RCLEGLCGSAG
Trigger: CCCTGCTGAGCCACAGAGACCTTCAAGACATCTTCAGGCGCTTTGGCCGTGAGGTAATGGTGGCACTGTATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000219614.2
CDS GCA 72 bp GTTGTAGTCCATCACTGGCTCGCTCGGAGCATACAGTaGCACCATTACCTCACGGCCAAAGCGCCTGAAGAT +
Preference number: 6 (lower is better)
Translates to: VVVHHWLARSIQ*HHYLTAKAPED
Trigger: ATCTTCAGGCGCTTTGGCCGTGAGGTAATGGTGGCACTGTATGCTCCGAGCGAGCCAGTGATGGACTACAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000219614.2
CDS CAA 72 bp AGGGCCACAGGGATGCTTATCTCCTCATACTGTGTCTaGTTGCCTCCTGGAGGGACCAGCTTCTCCTTGCTG +
Preference number: 6 (lower is better)
Translates to: RATGMLISSYCV*LPPGGTSFSLL
Trigger: CAGCAAGGAGAAGCTGGTCCCTCCAGGAGGCAACAAGACACAGTATGAGGAGATAAGCATCCCTGTGGCCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035597.10
ENSMUST00000219614.2
CDS TCA 72 bp TGCTCAAGTCTCGAAGCTTCAGGAGAGACACTTTGCTaGGGTCATGTGGCAAGTGGGCCCACTGTGGGTTGT +
Preference number: 6 (lower is better)
Translates to: CSSLEASGETLC*GHVASGPTVGC
Trigger: ACAACCCACAGTGGGCCCACTTGCCACATGACCTCAGCAAAGTGTCTCTCCTGAAGCTTCGAGACTTGAGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035597.10
CDS GCA 72 bp TTTCTCATAGAAGGTACAGTTGCCCCGGGCCACCAGTaGGATTTGGTTGGTGAAGTCTTCTGCAGGGACGTC +
Preference number: 6 (lower is better)
Translates to: FLIEGTVAPGHQ*DLVGEVFCRDV
Trigger: GACGTCCCTGCAGAAGACTTCACCAACCAAATCGCACTGGTGGCCCGGGGCAACTGTACCTTCTATGAGAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035597.10
CDS CCA 72 bp CTTCTGCAGGGACGTCAAGGTAGGAACAGAGCTGGGTaGTGCTCAAGTCTCGAAGCTTCAGGAGAGACACTT +
Preference number: 6 (lower is better)
Translates to: LLQGRQGRNRAG*CSSLEASGETL
Trigger: AAGTGTCTCTCCTGAAGCTTCGAGACTTGAGCACCACCCAGCTCTGTTCCTACCTTGACGTCCCTGCAGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035597.10
CDS CAA 72 bp ATAGAAGGTACAGTTGCCCCGGGCCACCAGTGCGATTaGGTTGGTGAAGTCTTCTGCAGGGACGTCAAGGTA +
Preference number: 6 (lower is better)
Translates to: IEGTVAPGHQCD*VGEVFCRDVKV
Trigger: TACCTTGACGTCCCTGCAGAAGACTTCACCAACCAAATCGCACTGGTGGCCCGGGGCAACTGTACCTTCTAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035597.10
CDS CAA 90 bp CACTTTCTCATAGAAGGTACAGTTGCCCCGGGCCACCAGTGCGATTaGGTTGGTGAAGTCTTCTGCAGGGACGTCAAGGTAGGAACAGAG +
Preference number: 6 (lower is better)
Translates to: HFLIEGTVAPGHQCD*VGEVFCRDVKVGTE
Trigger: CTCTGTTCCTACCTTGACGTCCCTGCAGAAGACTTCACCAACCAAATCGCACTGGTGGCCCGGGGCAACTGTACCTTCTATGAGAAAGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035597.10
CDS CCA 72 bp GAAGCAGCACATTACAACAAACACGCAGATCATGACTaGCGTCACGTCCACCGCCTCATCCTCCTGTTTCTC +
Preference number: 6 (lower is better)
Translates to: EAAHYNKHADHD*RHVHRLILLFL
Trigger: GAGAAACAGGAGGATGAGGCGGTGGACGTGACGCCAGTCATGATCTGCGTGTTTGTTGTAATGTGCTGCTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000219614.2
ENSMUST00000220091.2
CDS CCA 72 bp CATGACAAAGATGATGACCATGTTGTAGTCCATCACTaGCTCGCTCGGAGCATACAGTGCCACCATTACCTC +
Preference number: 6 (lower is better)
Translates to: HDKDDDHVVVHH*LARSIQCHHYL
Trigger: GAGGTAATGGTGGCACTGTATGCTCCGAGCGAGCCAGTGATGGACTACAACATGGTCATCATCTTTGTCATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035597.10
ENSMUST00000218789.2
ENSMUST00000219614.2