Pregenerated sensors for SPPL2A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027366Ensembl transcript IDs: ENSMUST00000028844.11, ENSMUST00000143700.2
Found 68 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GTAACTCCAGTCCCAGGGAATCCAACACCCTCCTCTGGTCTCCATTaGCACCAGGCACCAGGTACCAGGCACAAATGTGGTGTACAGACA | + |
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Preference number: 1 (lower is better) Translates to: VTPVPGNPTPSSGLH*HQAPGTRHKCGVQT Trigger: TGTCTGTACACCACATTTGTGCCTGGTACCTGGTGCCTGGTGCCAATGGAGACCAGAGGAGGGTGTTGGATTCCCTGGGACTGGAGTTAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| 3UTR CAA 90 bp | CGAGACGGAGGAGCTGGACATACTGCTCAGAGGTGGGCGCAGCACTaGCTCAGTGTGTGCACAGCCCTGGATAAGCGCCCCATGACGGAA | + |
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Preference number: 2 (lower is better) Translates to: RDGGAGHTAQRWAQH*LSVCTALDKRPMTE Trigger: TTCCGTCATGGGGCGCTTATCCAGGGCTGTGCACACACTGAGCAAGTGCTGCGCCCACCTCTGAGCAGTATGTCCAGCTCCTCCGTCTCG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| 3UTR-3UTR GCA 90 bp | ACAGTAACTAAAATACATGAATGCCAGCAGCATATGGAAGGACAGATTTCCTTCCTGGGATCAAAGGCGTaGGCCACCACGCCCTGCAGA | + |
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Preference number: 2 (lower is better) Translates to: TVTKIHECQQHMEGQISFLGSKA*ATTPCR Trigger: TCTGCAGGGCGTGGTGGCGCACGCCTTTGATCCCAG...GAAGGAAATCTGTCCTTCCATATGCTGCTGGCATTCATGTATTTTAGTTACTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| 3UTR-3UTR CCA 90 bp | TGTAGTCTACCCATCGGGAGTCCAACTGCCAGCTCTGAAAGTTCACTGACAGGAACTTCAGAACACTTGTaGTTACCAGACCTCACTTAC | + |
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Preference number: 2 (lower is better) Translates to: CSLPIGSPTASSESSLTGTSEHL*LPDLTY Trigger: GTAAGTGAGGTCTGGTAACCACAAGTGTTCTGAAGT...TCCTGTCAGTGAACTTTCAGAGCTGGCAGTTGGACTCCCGATGGGTAGACTACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| 3UTR-3UTR TCA 90 bp | ACAGTAACTAAAATACATGAATGCCAGCAGCATATGGAAGGACAGATTTCCTTCAGACAGAGGCAGGACTaGACTCCAGTCCTGCCTCTG | + |
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Preference number: 2 (lower is better) Translates to: TVTKIHECQQHMEGQISFRQRQD*TPVLPL Trigger: CAGAGGCAGGACTGGAGTTCAGTCCTGCCTCTGTCT...GAAGGAAATCTGTCCTTCCATATGCTGCTGGCATTCATGTATTTTAGTTACTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| 3UTR CAA 90 bp | AGCTACTTAGTAAGTTGTTTCATTGGCAGTGCTGGGGAAGGCACTTaGAACATGGTAGGCAAGTACTCTAACACTGATACACTCCAGACC | + |
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Preference number: 2 (lower is better) Translates to: SYLVSCFIGSAGEGT*NMVGKYSNTDTLQT Trigger: GGTCTGGAGTGTATCAGTGTTAGAGTACTTGCCTACCATGTTCAAAGTGCCTTCCCCAGCACTGCCAATGAAACAACTTACTAAGTAGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| 3UTR-3UTR GCA 90 bp | GAAAAGAGATGGACTTCAGAACACTTGTGGTTACCAGACCTCACTTACACAAGAACTGAACTCCAGTCCTaGCTCTGTCTCCAAGAGCAA | + |
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Preference number: 2 (lower is better) Translates to: EKRWTSEHLWLPDLTYTRTELQS*LCLQEQ Trigger: TTGCTCTTGGAGACAGAGGCAGGACTGGAGTTCAGT...TCTTGTGTAAGTGAGGTCTGGTAACCACAAGTGTTCTGAAGTCCATCTCTTTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| 3UTR-3UTR TCA 90 bp | GACTGGACTGCTCACGTCTCCTGTGCAATGTTGATACAGAAACACAAAAGCCTGAAACACCCATATACATaGACTGTCTTCTTGCAGTCT | + |
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Preference number: 2 (lower is better) Translates to: DWTAHVSCAMLIQKHKSLKHPYT*TVFLQS Trigger: AGACTGCAAGAAGACAGTTCATGTATATGGGTGTTT...CAGGCTTTTGTGTTTCTGTATCAACATTGCACAGGAGACGTGAGCAGTCCAGTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| 3UTR-3UTR CCA 90 bp | AGGAATCAAACCGGAGTTCTAGCGAATCAGTTTAACAGACTAGATATATTTTCATCCAACACCCTCCTCTaGTCTCCATTGGCACCAGGC | + |
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Preference number: 2 (lower is better) Translates to: RNQTGVLANQFNRLDIFSSNTLL*SPLAPG Trigger: GCCTGGTGCCAATGGAGACCAGAGGAGGGTGTTGGA...TGAAAATATATCTAGTCTGTTAAACTGATTCGCTAGAACTCCGGTTTGATTCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| 3UTR-3UTR TCA 90 bp | ACCCATTTTTCAGTATGCCTGTTTTACTTTGAAGAAGCTGGCTTTGCCTTAACAACTTGCTGCTCTTTCTaGGGACCTGGGTTTGATTCC | + |
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Preference number: 2 (lower is better) Translates to: THFSVCLFYFEEAGFALTTCCSF*GPGFDS Trigger: GGAATCAAACCCAGGTCCTCAGAAAGAGCAGCAAGT...TGTTAAGGCAAAGCCAGCTTCTTCAAAGTAAAACAGGCATACTGAAAAATGGGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| 3UTR-3UTR TCA 90 bp | AAAAGAGATGGACTTCAGAACACTTGTGGTTACCAGACCTCACTTACACAAGAACTTAAACGACAAGGATaGAGAGATGGCTCAGCAGTT | + |
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Preference number: 2 (lower is better) Translates to: KRDGLQNTCGYQTSLTQELKRQG*RDGSAV Trigger: AACTGCTGAGCCATCTCTTCATCCTTGTCGTTTAAG...TTCTTGTGTAAGTGAGGTCTGGTAACCACAAGTGTTCTGAAGTCCATCTCTTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| 3UTR-3UTR TCA 90 bp | GAAAAGAGATGGACTTCAGAACACTTGTGGTTACCAGACCTCACTTACACAAGAGCATGTGTACACAGATaGAAGAATTTAGGTTCTCAG | + |
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Preference number: 2 (lower is better) Translates to: EKRWTSEHLWLPDLTYTRACVHR*KNLGSQ Trigger: CTGAGAACCTAAATTCTTTCATCTGTGTACACATGC...TCTTGTGTAAGTGAGGTCTGGTAACCACAAGTGTTCTGAAGTCCATCTCTTTTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| 3UTR-3UTR TCA 90 bp | CCTGTATGCACAGTAACTAAAATACATGAATGCCAGCAGCATATGGAAGGACAGTGTAACTGTTGCTTTTaGATATCGCGACTTGAATGG | + |
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Preference number: 2 (lower is better) Translates to: PVCTVTKIHECQQHMEGQCNCCF*ISRLEW Trigger: CCATTCAAGTCGCGATATTCAAAAGCAACAGTTACA...CTGTCCTTCCATATGCTGCTGGCATTCATGTATTTTAGTTACTGTGCATACAGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| 3UTR-3UTR GCA 90 bp | ACAGTAACTAAAATACATGAATGCCAGCAGCATATGGAAGGACAGATTTCCTTCTGGTGTACAGACAGATaGATACAGGCAAAACACCCA | + |
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Preference number: 2 (lower is better) Translates to: TVTKIHECQQHMEGQISFWCTDR*IQAKHP Trigger: TGGGTGTTTTGCCTGTATGCATCTGTCTGTACACCA...GAAGGAAATCTGTCCTTCCATATGCTGCTGGCATTCATGTATTTTAGTTACTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| 3UTR-3UTR CCA 90 bp | AGGAATCAAACCGGAGTTCTAGCGAATCAGTTTAACAGACTAGATATATTTTCATACCAGGCACAAATGTaGTGTACAGACAGATGCATA | + |
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Preference number: 2 (lower is better) Translates to: RNQTGVLANQFNRLDIFSYQAQM*CTDRCI Trigger: TATGCATCTGTCTGTACACCACATTTGTGCCTGGTA...TGAAAATATATCTAGTCTGTTAAACTGATTCGCTAGAACTCCGGTTTGATTCCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| 3UTR-3UTR TCA 90 bp | AGGAATCAAACCGGAGTTCTAGCGAATCAGTTTAACAGACTAGATATATTTTCACAAGAGAGGAAGAGATaGCAAATTTTCAGAGACAAA | + |
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Preference number: 2 (lower is better) Translates to: RNQTGVLANQFNRLDIFSQERKR*QIFRDK Trigger: TTTGTCTCTGAAAATTTGTCATCTCTTCCTCTCTTG...TGAAAATATATCTAGTCTGTTAAACTGATTCGCTAGAACTCCGGTTTGATTCCT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| 3UTR GCA 72 bp | GAGCTGGACATACTGCTCAGAGGTGGGCGCAGCACTTaGTCAGTGTGTGCACAGCCCTGGATAAGCGCCCCA | + |
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Preference number: 3 (lower is better) Translates to: ELDILLRGGRST*SVCAQPWISAP Trigger: TGGGGCGCTTATCCAGGGCTGTGCACACACTGAGCAAGTGCTGCGCCCACCTCTGAGCAGTATGTCCAGCTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| 3UTR GCA 72 bp | ACTGCTCAGAGGTGGGCGCAGCACTTGCTCAGTGTGTaGACAGCCCTGGATAAGCGCCCCATGACGGAAAAA | + |
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Preference number: 3 (lower is better) Translates to: TAQRWAQHLLSV*TALDKRPMTEK Trigger: TTTTTCCGTCATGGGGCGCTTATCCAGGGCTGTGCACACACTGAGCAAGTGCTGCGCCCACCTCTGAGCAGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| 3UTR CCA 72 bp | TGTAACTCCAGTCCCAGGGAATCCAACACCCTCCTCTaGTCTCCATTGGCACCAGGCACCAGGTACCAGGCA | + |
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Preference number: 3 (lower is better) Translates to: CNSSPRESNTLL*SPLAPGTRYQA Trigger: TGCCTGGTACCTGGTGCCTGGTGCCAATGGAGACCAGAGGAGGGTGTTGGATTCCCTGGGACTGGAGTTACA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| 3UTR TCA 72 bp | GGACCTGGGTTTGATTCCCAGAACACAAAGGGCAGCTaGCAACCATCTGTAACTCCAGTCCCAGGGAATCCA | + |
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Preference number: 3 (lower is better) Translates to: GPGFDSQNTKGS*QPSVTPVPGNP Trigger: TGGATTCCCTGGGACTGGAGTTACAGATGGTTGTCAGCTGCCCTTTGTGTTCTGGGAATCAAACCCAGGTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| 3UTR TCA 72 bp | GATGGCTCAGCAGTTAGGAGCACTTGCTGCTCTTTCTaGGGACCTGGGTTTGATTCCCAGAACACAAAGGGC | + |
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Preference number: 3 (lower is better) Translates to: DGSAVRSTCCSF*GPGFDSQNTKG Trigger: GCCCTTTGTGTTCTGGGAATCAAACCCAGGTCCTCAGAAAGAGCAGCAAGTGCTCCTAACTGCTGAGCCATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| 3UTR CCA 72 bp | CCATTGGCACCAGGCACCAGGTACCAGGCACAAATGTaGTGTACAGACAGATGCATACAGGCAAAACACCCA | + |
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Preference number: 3 (lower is better) Translates to: PLAPGTRYQAQM*CTDRCIQAKHP Trigger: TGGGTGTTTTGCCTGTATGCATCTGTCTGTACACCACATTTGTGCCTGGTACCTGGTGCCTGGTGCCAATGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| 3UTR TCA 72 bp | TGCTCAGTGTGTGCACAGCCCTGGATAAGCGCCCCATaGCGGAAAAATCGCTTTAGAAATGTGGACATTGAC | + |
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Preference number: 3 (lower is better) Translates to: CSVCAQPWISAP*RKNRFRNVDID Trigger: GTCAATGTCCACATTTCTAAAGCGATTTTTCCGTCATGGGGCGCTTATCCAGGGCTGTGCACACACTGAGCA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| 3UTR TCA 72 bp | CCATCGGGAGTCCAACTGCCAGCTCTGAAAGTTCACTaGCAGGAATCAAACCGGAGTTCTAGCGAATCAGTT | + |
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Preference number: 3 (lower is better) Translates to: PSGVQLPALKVH*QESNRSSSESV Trigger: AACTGATTCGCTAGAACTCCGGTTTGATTCCTGTCAGTGAACTTTCAGAGCTGGCAGTTGGACTCCCGATGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| 3UTR-3UTR CAA 90 bp | AAGTTGTTTCATTGGCAGTGCTGGGGAAGGCACTTTGAACATGGTAGGCAAGTATGGACTTCAGAACACTaGTGGTTACCAGACCTCACT | + |
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Preference number: 3 (lower is better) Translates to: KLFHWQCWGRHFEHGRQVWTSEH*WLPDLT Trigger: AGTGAGGTCTGGTAACCACAAGTGTTCTGAAGTCCA...TACTTGCCTACCATGTTCAAAGTGCCTTCCCCAGCACTGCCAATGAAACAACTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| 3UTR-3UTR CAA 90 bp | AGGAATCAAACCGGAGTTCTAGCGAATCAGTTTAACAGACTAGATATATTTTCAAGGTGGGCGCAGCACTaGCTCAGTGTGTGCACAGCC | + |
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Preference number: 3 (lower is better) Translates to: RNQTGVLANQFNRLDIFSRWAQH*LSVCTA Trigger: GGCTGTGCACACACTGAGCAAGTGCTGCGCCCACCT...TGAAAATATATCTAGTCTGTTAAACTGATTCGCTAGAACTCCGGTTTGATTCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| 3UTR TCA 72 bp | CTGTTTTACTTTGAAGAAGCTGGCTTTGCCTTAACATaGACGACTGGACTGCTCACGTCTCCTGTGCAATGT | + |
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Preference number: 3 (lower is better) Translates to: LFYFEEAGFALT*TTGLLTSPVQC Trigger: ACATTGCACAGGAGACGTGAGCAGTCCAGTCGTTCATGTTAAGGCAAAGCCAGCTTCTTCAAAGTAAAACAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| 3UTR-3UTR CAA 90 bp | ACAAGAAGGACTGGAAAGCAGGGTGAAGATGATATAAGTATTGTCAGGATAGTCGTCCTAACTAAACCTTaGGGAGACAGAGGCAGGACT | + |
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Preference number: 3 (lower is better) Translates to: TRRTGKQGEDDISIVRIVVLTKP*GDRGRT Trigger: AGTCCTGCCTCTGTCTCCCAAAGGTTTAGTTAGGAC...GACTATCCTGACAATACTTATATCATCTTCACCCTGCTTTCCAGTCCTTCTTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| 3UTR GCA 72 bp | GCAATGTTGATACAGAAACACAAAAGCCTGCGCTTCTaGGATGACTTGTCACCTGGTACTTTCTTAGAGAAA | + |
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Preference number: 3 (lower is better) Translates to: AMLIQKHKSLRF*DDLSPGTFLEK Trigger: TTTCTCTAAGAAAGTACCAGGTGACAAGTCATCGCAGAAGCGCAGGCTTTTGTGTTTCTGTATCAACATTGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| 3UTR CCA 72 bp | GACAAAAAGCTACTGAATTTACACTCACTTGTCCTATaGGGGAAGTTGAAGGCCAACCAGATATATGGTAGG | + |
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Preference number: 3 (lower is better) Translates to: DKKLLNLHSLVL*GKLKANQIYGR Trigger: CCTACCATATATCTGGTTGGCCTTCAACTTCCCCCATAGGACAAGTGAGTGTAAATTCAGTAGCTTTTTGTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| 3UTR TCA 72 bp | AGATATATTTTCATCCAATGTAAAATAATCCTGCTTTaGCCTAGAGCCGAGACGGAGGAGCTGGACATACTG | + |
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Preference number: 3 (lower is better) Translates to: RYIFIQCKIILL*PRAETEELDIL Trigger: CAGTATGTCCAGCTCCTCCGTCTCGGCTCTAGGTCAAAGCAGGATTATTTTACATTGGATGAAAATATATCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| 3UTR TCA 72 bp | GTTGATACAGAAACACAAAAGCCTGCGCTTCTGCGATaGCTTGTCACCTGGTACTTTCTTAGAGAAATTTTA | + |
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Preference number: 3 (lower is better) Translates to: VDTETQKPALLR*LVTWYFLREIL Trigger: TAAAATTTCTCTAAGAAAGTACCAGGTGACAAGTCATCGCAGAAGCGCAGGCTTTTGTGTTTCTGTATCAAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| 3UTR GCA 72 bp | CCCAAACCTGTATGCACAGTAACTAAAATACATGAATaGCAGCAGCATATGGAAGGACAGATTTCCTTCAAA | + |
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Preference number: 3 (lower is better) Translates to: PKPVCTVTKIHE*QQHMEGQISFK Trigger: TTTGAAGGAAATCTGTCCTTCCATATGCTGCTGGCATTCATGTATTTTAGTTACTGTGCATACAGGTTTGGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| 3UTR-3UTR CAA 90 bp | ACCCATTTTTCAGTATGCCTGTTTTACTTTGAAGAAGCTGGCTTTGCCTTAACAACTCAGAAACTTGCTTaGACACTTACACATGATCTA | + |
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Preference number: 3 (lower is better) Translates to: THFSVCLFYFEEAGFALTTQKLA*TLTHDL Trigger: TAGATCATGTGTAAGTGTCAAAGCAAGTTTCTGAGT...TGTTAAGGCAAAGCCAGCTTCTTCAAAGTAAAACAGGCATACTGAAAAATGGGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| 3UTR CAA 72 bp | GGAGCTGGACATACTGCTCAGAGGTGGGCGCAGCACTaGCTCAGTGTGTGCACAGCCCTGGATAAGCGCCCC | + |
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Preference number: 4 (lower is better) Translates to: GAGHTAQRWAQH*LSVCTALDKRP Trigger: GGGGCGCTTATCCAGGGCTGTGCACACACTGAGCAAGTGCTGCGCCCACCTCTGAGCAGTATGTCCAGCTCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| 3UTR CAA 72 bp | AGTCCCAGGGAATCCAACACCCTCCTCTGGTCTCCATaGGCACCAGGCACCAGGTACCAGGCACAAATGTGG | + |
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Preference number: 4 (lower is better) Translates to: SPRESNTLLWSP*APGTRYQAQMW Trigger: CCACATTTGTGCCTGGTACCTGGTGCCTGGTGCCAATGGAGACCAGAGGAGGGTGTTGGATTCCCTGGGACT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| CDS-3UTR TCA 90 bp | GGCACCAGGTACCAGGCACAAATGTGGTGTACAGACAGATGCATACAGGCAAAATGCAGAATGGCTTCCTaGGCAGCTGCCAGTCCGAGC | + |
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Preference number: 4 (lower is better) Translates to: GTRYQAQMWCTDRCIQAKCRMAS*AAASPS Trigger: GCTCGGACTGGCAGCTGCTCAGGAAGCCATTCTGCA...TTTTGCCTGTATGCATCTGTCTGTACACCACATTTGTGCCTGGTACCTGGTGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| CDS-3UTR TCA 90 bp | GTAGACCAGGCTGGCCCCAAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGATTTTCTTCATTTGTTaGATAGTCCAGGTGGTCCAT | + |
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Preference number: 4 (lower is better) Translates to: VDQAGPKLRNPPASASRVIFFIC*IVQVVH Trigger: ATGGACCACCTGGACTATTCAACAAATGAAGAAAAT...CACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTTGGGGCCAGCCTGGTCTAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| CDS-3UTR GCA 90 bp | CCTGTATGCACAGTAACTAAAATACATGAATGCCAGCAGCATATGGAAGGACAGGGCTTCCTGAGCAGCTaGCAGTCCGAGCAGGCAGCT | + |
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Preference number: 4 (lower is better) Translates to: PVCTVTKIHECQQHMEGQGFLSS*QSEQAA Trigger: AGCTGCCTGCTCGGACTGGCAGCTGCTCAGGAAGCC...CTGTCCTTCCATATGCTGCTGGCATTCATGTATTTTAGTTACTGTGCATACAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| 3UTR CAA 72 bp | TTAGGAGCACTTGCTGCTCTTTCTGAGGACCTGGGTTaGATTCCCAGAACACAAAGGGCAGCTGACAACCAT | + |
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Preference number: 4 (lower is better) Translates to: LGALAALSEDLG*IPRTQRAADNH Trigger: ATGGTTGTCAGCTGCCCTTTGTGTTCTGGGAATCAAACCCAGGTCCTCAGAAAGAGCAGCAAGTGCTCCTAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| CDS-3UTR TCA 90 bp | TGTAGTCTACCCATCGGGAGTCCAACTGCCAGCTCTGAAAGTTCACTGACAGGAGCATACACTCATGACTaGGTAACCCATCAGTTTTGG | + |
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Preference number: 4 (lower is better) Translates to: CSLPIGSPTASSESSLTGAYTHD*VTHQFW Trigger: CCAAAACTGATGGGTTACTCAGTCATGAGTGTATGC...TCCTGTCAGTGAACTTTCAGAGCTGGCAGTTGGACTCCCGATGGGTAGACTACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| CDS-3UTR GCA 90 bp | GACTGGACTGCTCACGTCTCCTGTGCAATGTTGATACAGAAACACAAAAGCCTGAGAAAGGTGGCACAGTaGTGTGCCCGTCAGATTCAT | + |
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Preference number: 4 (lower is better) Translates to: DWTAHVSCAMLIQKHKSLRKVAQ*CARQIH Trigger: ATGAATCTGACGGGCACAGCACTGTGCCACCTTTCT...CAGGCTTTTGTGTTTCTGTATCAACATTGCACAGGAGACGTGAGCAGTCCAGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| CDS-3UTR GCA 90 bp | CCTGTATGCACAGTAACTAAAATACATGAATGCCAGCAGCATATGGAAGGACAGGGTGGCACAGTGCTGTaGCCGTCAGATTCATCAAGC | + |
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Preference number: 4 (lower is better) Translates to: PVCTVTKIHECQQHMEGQGGTVL*PSDSSS Trigger: GCTTGATGAATCTGACGGGCACAGCACTGTGCCACC...CTGTCCTTCCATATGCTGCTGGCATTCATGTATTTTAGTTACTGTGCATACAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| CDS-3UTR CCA 90 bp | GAAAAGAGATGGACTTCAGAACACTTGTGGTTACCAGACCTCACTTACACAAGAGGAATATCAGAAAGGTaGCACAGTGCTGTGCCCGTC | + |
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Preference number: 4 (lower is better) Translates to: EKRWTSEHLWLPDLTYTRGISER*HSAVPV Trigger: GACGGGCACAGCACTGTGCCACCTTTCTGATATTCC...TCTTGTGTAAGTGAGGTCTGGTAACCACAAGTGTTCTGAAGTCCATCTCTTTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| CDS-3UTR TCA 90 bp | GACTGGACTGCTCACGTCTCCTGTGCAATGTTGATACAGAAACACAAAAGCCTGTTCTGCGTCTTCCACTaGCTTCATGTTTTCCAATTC | + |
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Preference number: 4 (lower is better) Translates to: DWTAHVSCAMLIQKHKSLFCVFH*LHVFQF Trigger: GAATTGGAAAACATGAAGTCAGTGGAAGACGCAGAA...CAGGCTTTTGTGTTTCTGTATCAACATTGCACAGGAGACGTGAGCAGTCCAGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| CDS-3UTR GCA 90 bp | AAGTTGTTTCATTGGCAGTGCTGGGGAAGGCACTTTGAACATGGTAGGCAAGTATACTGTTGTACAATCTaGTCATCAGTCGTCACTGGA | + |
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Preference number: 4 (lower is better) Translates to: KLFHWQCWGRHFEHGRQVYCCTI*SSVVTG Trigger: TCCAGTGACGACTGATGAGCAGATTGTACAACAGTA...TACTTGCCTACCATGTTCAAAGTGCCTTCCCCAGCACTGCCAATGAAACAACTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| CDS-3UTR CCA 90 bp | AAGTTGTTTCATTGGCAGTGCTGGGGAAGGCACTTTGAACATGGTAGGCAAGTACACCCTGATAACTACTaGCAACTTTTCAGCATTCTC | + |
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Preference number: 4 (lower is better) Translates to: KLFHWQCWGRHFEHGRQVHPDNY*QLFSIL Trigger: GAGAATGCTGAAAAGTTGCCAGTAGTTATCAGGGTG...TACTTGCCTACCATGTTCAAAGTGCCTTCCCCAGCACTGCCAATGAAACAACTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| CDS-3UTR CCA 90 bp | ATGAACGACTGGACTGCTCACGTCTCCTGTGCAATGTTGATACAGAAACACAAAGTAACCCATCAGTTTTaGCACCCTGATAACTACTGG | + |
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Preference number: 4 (lower is better) Translates to: MNDWTAHVSCAMLIQKHKVTHQF*HPDNYW Trigger: CCAGTAGTTATCAGGGTGCCAAAACTGATGGGTTAC...TTTGTGTTTCTGTATCAACATTGCACAGGAGACGTGAGCAGTCCAGTCGTTCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| CDS-3UTR TCA 90 bp | AAGTTGTTTCATTGGCAGTGCTGGGGAAGGCACTTTGAACATGGTAGGCAAGTAGTATCACGCATGACATaGAATTGGGTAACTTCATTG | + |
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Preference number: 4 (lower is better) Translates to: KLFHWQCWGRHFEHGRQVVSRMT*NWVTSL Trigger: CAATGAAGTTACCCAATTTCATGTCATGCGTGATAC...TACTTGCCTACCATGTTCAAAGTGCCTTCCCCAGCACTGCCAATGAAACAACTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| CDS-3UTR TCA 90 bp | ACAAGAAGGACTGGAAAGCAGGGTGAAGATGATATAAGTATTGTCAGGATAGTCCAGCAAGTTCCACCATaGTGCTCTCACCATTCTTTG | + |
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Preference number: 4 (lower is better) Translates to: TRRTGKQGEDDISIVRIVQQVPP*CSHHSL Trigger: CAAAGAATGGTGAGAGCATCATGGTGGAACTTGCTG...GACTATCCTGACAATACTTATATCATCTTCACCCTGCTTTCCAGTCCTTCTTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| CDS-3UTR GCA 90 bp | ACAAGAAGGACTGGAAAGCAGGGTGAAGATGATATAAGTATTGTCAGGATAGTCCAACAGCAACTGAGATaGACAGCCCGGAAAGGAAAA | + |
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Preference number: 4 (lower is better) Translates to: TRRTGKQGEDDISIVRIVQQQLR*TARKGK Trigger: TTTTCCTTTCCGGGCTGTGCATCTCAGTTGCTGTTG...GACTATCCTGACAATACTTATATCATCTTCACCCTGCTTTCCAGTCCTTCTTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| CDS-3UTR CCA 90 bp | CCTGTATGCACAGTAACTAAAATACATGAATGCCAGCAGCATATGGAAGGACAGACATGCAGTAGTCCTTaGAAAGTGAAGACACGCCAT | + |
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Preference number: 4 (lower is better) Translates to: PVCTVTKIHECQQHMEGQTCSSP*KVKTRH Trigger: ATGGCGTGTCTTCACTTTCCAAGGACTACTGCATGT...CTGTCCTTCCATATGCTGCTGGCATTCATGTATTTTAGTTACTGTGCATACAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| 3UTR CAA 72 bp | CCCCATGACGGAAAAATCGCTTTAGAAATGTGGACATaGACAGAGCAAAGGAACTTAGAAAGCTCATTGGAG | + |
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Preference number: 4 (lower is better) Translates to: PHDGKIALEMWT*TEQRNLESSLE Trigger: CTCCAATGAGCTTTCTAAGTTCCTTTGCTCTGTCAATGTCCACATTTCTAAAGCGATTTTTCCGTCATGGGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| CDS-3UTR TCA 90 bp | ACCCATTTTTCAGTATGCCTGTTTTACTTTGAAGAAGCTGGCTTTGCCTTAACAACAGGCCTGGTACAATaGTATCTCCGAAACCCAATA | + |
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Preference number: 4 (lower is better) Translates to: THFSVCLFYFEEAGFALTTGLVQ*YLRNPI Trigger: TATTGGGTTTCGGAGATATCATTGTACCAGGCCTGT...TGTTAAGGCAAAGCCAGCTTCTTCAAAGTAAAACAGGCATACTGAAAAATGGGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| CDS-3UTR TCA 90 bp | ACAAGAAGGACTGGAAAGCAGGGTGAAGATGATATAAGTATTGTCAGGATAGTCACTCCAAGCAACGACTaGGACAGTAATAAGTGTACA | + |
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Preference number: 4 (lower is better) Translates to: TRRTGKQGEDDISIVRIVTPSND*DSNKCT Trigger: TGTACACTTATTACTGTCTCAGTCGTTGCTTGGAGT...GACTATCCTGACAATACTTATATCATCTTCACCCTGCTTTCCAGTCCTTCTTGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| CDS-3UTR CCA 90 bp | ACAAGAAGGACTGGAAAGCAGGGTGAAGATGATATAAGTATTGTCAGGATAGTCTGCAATCAACAGGCCTaGTACAATGATATCTCCGAA | + |
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Preference number: 4 (lower is better) Translates to: TRRTGKQGEDDISIVRIVCNQQA*YNDISE Trigger: TTCGGAGATATCATTGTACCAGGCCTGTTGATTGCA...GACTATCCTGACAATACTTATATCATCTTCACCCTGCTTTCCAGTCCTTCTTGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| CDS-3UTR GCA 90 bp | AGGAATCAAACCGGAGTTCTAGCGAATCAGTTTAACAGACTAGATATATTTTCAAGCACCACCTTCCTGTaGAATTCTGGCTTTTTCAAG | + |
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Preference number: 4 (lower is better) Translates to: RNQTGVLANQFNRLDIFSSTTFL*NSGFFK Trigger: CTTGAAAAAGCCAGAATTGCACAGGAAGGTGGTGCT...TGAAAATATATCTAGTCTGTTAAACTGATTCGCTAGAACTCCGGTTTGATTCCT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| CDS-3UTR GCA 90 bp | ACAAGAAGGACTGGAAAGCAGGGTGAAGATGATATAAGTATTGTCAGGATAGTCCATCCTATGAATCAATaGAGAAAGACAGTTGTACAG | + |
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Preference number: 4 (lower is better) Translates to: TRRTGKQGEDDISIVRIVHPMNQ*RKTVVQ Trigger: CTGTACAACTGTCTTTCTGCATTGATTCATAGGATG...GACTATCCTGACAATACTTATATCATCTTCACCCTGCTTTCCAGTCCTTCTTGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| CDS-3UTR CAA 90 bp | GGGAATCCAACACCCTCCTCTGGTCTCCATTGGCACCAGGCACCAGGTACCAGGAATGCAGAAAGACAGTaGTACAGGCTCATTGACGAT | + |
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Preference number: 5 (lower is better) Translates to: GNPTPSSGLHWHQAPGTRNAERQ*YRLIDD Trigger: ATCGTCAATGAGCCTGTACAACTGTCTTTCTGCATT...CCTGGTACCTGGTGCCTGGTGCCAATGGAGACCAGAGGAGGGTGTTGGATTCCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| CDS TCA 90 bp | AGCCCACCTATCCTCATTTCGAAATACAGCCCACACAACAGCAACTaGGATGCACAGCCCGGAAAGGAAAATCAGGCTCACTTTAATGTT | + |
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Preference number: 5 (lower is better) Translates to: SPPILISKYSPHNSN*DAQPGKENQAHFNV Trigger: AACATTAAAGTGAGCCTGATTTTCCTTTCCGGGCTGTGCATCTCAGTTGCTGTTGTGTGGGCTGTATTTCGAAATGAGGATAGGTGGGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028844.11 ENSMUST00000143700.2 |
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| CDS TCA 90 bp | TTTTTGCCACAACACAAAATCGTGCACTGTCCACATGGCATCCTATaGATCAATGCAGAAAGACAGTTGTACAGGCTCATTGACGATGCT | + |
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Preference number: 5 (lower is better) Translates to: FLPQHKIVHCPHGIL*INAERQLYRLIDDA Trigger: AGCATCGTCAATGAGCCTGTACAACTGTCTTTCTGCATTGATTCATAGGATGCCATGTGGACAGTGCACGATTTTGTGTTGTGGCAAAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| CDS-3UTR CAA 90 bp | GACTGGACTGCTCACGTCTCCTGTGCAATGTTGATACAGAAACACAAAAGCCTGCTCACTTTAATGTTTTaGCCACAACACAAAATCGTG | + |
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Preference number: 5 (lower is better) Translates to: DWTAHVSCAMLIQKHKSLLTLMF*PQHKIV Trigger: CACGATTTTGTGTTGTGGCAAAAACATTAAAGTGAG...CAGGCTTTTGTGTTTCTGTATCAACATTGCACAGGAGACGTGAGCAGTCCAGTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| CDS-3UTR CAA 90 bp | AAAAGAGATGGACTTCAGAACACTTGTGGTTACCAGACCTCACTTACACAAGAACATTTTCTAGGGAACTaGGAAGTCGTGTCCAGTTGT | + |
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Preference number: 5 (lower is better) Translates to: KRDGLQNTCGYQTSLTQEHFLGN*EVVSSC Trigger: ACAACTGGACACGACTTCCAAGTTCCCTAGAAAATG...TTCTTGTGTAAGTGAGGTCTGGTAACCACAAGTGTTCTGAAGTCCATCTCTTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| CDS-3UTR CAA 90 bp | AGGAATCAAACCGGAGTTCTAGCGAATCAGTTTAACAGACTAGATATATTTTCACTGGATTTTCTTCATTaGTTGAATAGTCCAGGTGGT | + |
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Preference number: 5 (lower is better) Translates to: RNQTGVLANQFNRLDIFSLDFLH*LNSPGG Trigger: ACCACCTGGACTATTCAACAAATGAAGAAAATCCAG...TGAAAATATATCTAGTCTGTTAAACTGATTCGCTAGAACTCCGGTTTGATTCCT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| CDS GCA 72 bp | CTGATAACTACTGGCAATTTCTCATGGGGAGCTGTGTaGAGAGCAGTGGCTTCCACAAAGTTTCCATCATTC | + |
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Preference number: 6 (lower is better) Translates to: LITTGNFSWGAV*RAVASTKFPSF Trigger: GAATGATGGAAACTTTGTGGAAGCCACTGCTCTGCACACAGCTCCCCATGAGAAATTGCCAGTAGTTATCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000143700.2 |
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| CDS CAA 72 bp | GATTTGTTCCTTGAGGAAGGAATTAGGACACTGTTGTaGGCAATCAGCAATGCTGCAGCACCACCTTCCTGT | + |
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Preference number: 6 (lower is better) Translates to: DLFLEEGIRTLL*AISNAAAPPSC Trigger: ACAGGAAGGTGGTGCTGCAGCATTGCTGATTGCCAACAACAGTGTCCTAATTCCTTCCTCAAGGAACAAATC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| CDS CAA 72 bp | GTAGATTTGTTCCTTGAGGAAGGAATTAGGACACTGTaGTTGGCAATCAGCAATGCTGCAGCACCACCTTCC | + |
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Preference number: 6 (lower is better) Translates to: VDLFLEEGIRTL*LAISNAAAPPS Trigger: GGAAGGTGGTGCTGCAGCATTGCTGATTGCCAACAACAGTGTCCTAATTCCTTCCTCAAGGAACAAATCTAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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| CDS TCA 72 bp | CAACACAAAATCGTGCACTGTCCACATGGCATCCTATaGATCAATGCAGAAAGACAGTTGTACAGGCTCATT | + |
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Preference number: 6 (lower is better) Translates to: QHKIVHCPHGIL*INAERQLYRLI Trigger: AATGAGCCTGTACAACTGTCTTTCTGCATTGATTCATAGGATGCCATGTGGACAGTGCACGATTTTGTGTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028844.11 |
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