Pregenerated sensors for SPP2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026295Ensembl transcript IDs: ENSMUST00000027518.12, ENSMUST00000176708.8, ENSMUST00000189225.2
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TCTCCAGGATGTCACTCAAAGCCAGAATTTACTCTTGCTCTGCGATaGAGGTTCAGGAACCTTCTATGGGCGGGAGGCTGTCCCCTCCTC | + |
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Preference number: 1 (lower is better) Translates to: SPGCHSKPEFTLALR*RFRNLLWAGGCPLL Trigger: GAGGAGGGGACAGCCTCCCGCCCATAGAAGGTTCCTGAACCTCCATCGCAGAGCAAGAGTAAATTCTGGCTTTGAGTGACATCCTGGAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000189225.2 |
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| 3UTR-3UTR TCA 90 bp | TGCAGAGTGGAGATTATAAAAAGGAAAAAGACACCATTCTCCATGCCTTTCTTCCTTCTCTTTCTTTCATaGAATCTCCAGGATGTCACT | + |
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Preference number: 2 (lower is better) Translates to: CRVEIIKRKKTPFSMPFFLLFLS*NLQDVT Trigger: AGTGACATCCTGGAGATTTCATGAAAGAAAGAGAAG...GAAGAAAGGCATGGAGAATGGTGTCTTTTTCCTTTTTATAATCTCCACTCTGCA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000189225.2 |
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| 3UTR-3UTR GCA 90 bp | TGCAGAGTGGAGATTATAAAAAGGAAAAAGACACCATTCTCCATGCCTTTCTTCAGACACCATTCTCCATaGCTTTCTTCATTTCAGCTT | + |
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Preference number: 2 (lower is better) Translates to: CRVEIIKRKKTPFSMPFFRHHSP*LSSFQL Trigger: AAGCTGAAATGAAGAAAGGCATGGAGAATGGTGTCT...GAAGAAAGGCATGGAGAATGGTGTCTTTTTCCTTTTTATAATCTCCACTCTGCA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000027518.12 ENSMUST00000176708.8 ENSMUST00000189225.2 |
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| 3UTR-3UTR GCA 90 bp | TTGCAGAGTGGAGATTATAAAAAGGAAAAAGACACCATTCTCCATGCCTTTCTTAGACACCATTCTCCATaGCTTTCTTCATTTCAGCTT | + |
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Preference number: 2 (lower is better) Translates to: LQSGDYKKEKDTILHAFLRHHSP*LSSFQL Trigger: AAGCTGAAATGAAGAAAGGCATGGAGAATGGTGTCT...AAGAAAGGCATGGAGAATGGTGTCTTTTTCCTTTTTATAATCTCCACTCTGCAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000027518.12 ENSMUST00000176708.8 ENSMUST00000189225.2 |
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| 3UTR GCA 72 bp | ATCTCCAGGATGTCACTCAAAGCCAGAATTTACTCTTaGTCTGCGATGGAGGTTCAGGAACCTTCTATGGGC | + |
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Preference number: 3 (lower is better) Translates to: ISRMSLKARIYS*SAMEVQEPSMG Trigger: GCCCATAGAAGGTTCCTGAACCTCCATCGCAGAGCAAGAGTAAATTCTGGCTTTGAGTGACATCCTGGAGAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000189225.2 |
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| CDS-3UTR TCA 90 bp | TCTTTATTGCAGAGTGGAGATTATAAAAAGGAAAAAGACACCATTCTCCATGCCGCTGTTGGACTCAGATaGGGACGCCCAGCGGCAGTG | + |
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Preference number: 4 (lower is better) Translates to: SLLQSGDYKKEKDTILHAAVGLR*GRPAAV Trigger: CACTGCCGCTGGGCGTCCTCATCTGAGTCCAACAGC...GGCATGGAGAATGGTGTCTTTTTCCTTTTTATAATCTCCACTCTGCAATAAAGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000027518.12 ENSMUST00000176708.8 |
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| CDS-3UTR TCA 90 bp | GATCTTTATTGCAGAGTGGAGATTATAAAAAGGAAAAAGACACCATTCTCCATGGCTGTTGGACTCAGATaGGGACGCCCAGCGGCAGTG | + |
|
Preference number: 4 (lower is better) Translates to: DLYCRVEIIKRKKTPFSMAVGLR*GRPAAV Trigger: CACTGCCGCTGGGCGTCCTCATCTGAGTCCAACAGC...CATGGAGAATGGTGTCTTTTTCCTTTTTATAATCTCCACTCTGCAATAAAGATC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000027518.12 ENSMUST00000176708.8 |
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| 3UTR CAA 72 bp | AATCTCCAGGATGTCACTCAAAGCCAGAATTTACTCTaGCTCTGCGATGGAGGTTCAGGAACCTTCTATGGG | + |
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Preference number: 4 (lower is better) Translates to: NLQDVTQSQNLL*LCDGGSGTFYG Trigger: CCCATAGAAGGTTCCTGAACCTCCATCGCAGAGCAAGAGTAAATTCTGGCTTTGAGTGACATCCTGGAGATT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000189225.2 |
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| CDS-3UTR GCA 90 bp | TGCAGAGTGGAGATTATAAAAAGGAAAAAGACACCATTCTCCATGCCTTTCTTCTCTGCACAGTGCTCCTaGAAGCAGCTGTTGGCACAG | + |
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Preference number: 4 (lower is better) Translates to: CRVEIIKRKKTPFSMPFFSAQCS*KQLLAQ Trigger: CTGTGCCAACAGCTGCTTGCAGGAGCACTGTGCAGA...GAAGAAAGGCATGGAGAATGGTGTCTTTTTCCTTTTTATAATCTCCACTCTGCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000027518.12 |
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| CDS-3UTR TCA 90 bp | GATCTTTATTGCAGAGTGGAGATTATAAAAAGGAAAAAGACACCATTCTCCATGTTGCCACTGAGGCACTaGGAGCTTCCTGCAGAGAGG | + |
|
Preference number: 4 (lower is better) Translates to: DLYCRVEIIKRKKTPFSMLPLRH*ELPAER Trigger: CCTCTCTGCAGGAAGCTCTCAGTGCCTCAGTGGCAA...CATGGAGAATGGTGTCTTTTTCCTTTTTATAATCTCCACTCTGCAATAAAGATC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000027518.12 |
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| CDS-3UTR TCA 90 bp | TATTGCAGAGTGGAGATTATAAAAAGGAAAAAGACACCATTCTCCATGCCTTTCGTTCACCTTTGCCACTaGGGCACTGAGAGCTTCCTG | + |
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Preference number: 4 (lower is better) Translates to: YCRVEIIKRKKTPFSMPFVHLCH*GTESFL Trigger: CAGGAAGCTCTCAGTGCCTCAGTGGCAAAGGTGAAC...GAAAGGCATGGAGAATGGTGTCTTTTTCCTTTTTATAATCTCCACTCTGCAATA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000027518.12 |
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| CDS-3UTR TCA 90 bp | TCTTTATTGCAGAGTGGAGATTATAAAAAGGAAAAAGACACCATTCTCCATGCCCTTCATCCAGGACGTTaGCTCTCTTCAAGGAGCTCC | + |
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Preference number: 4 (lower is better) Translates to: SLLQSGDYKKEKDTILHALHPGR*LSSRSS Trigger: GGAGCTCCTTGAAGAGAGTCAACGTCCTGGATGAAG...GGCATGGAGAATGGTGTCTTTTTCCTTTTTATAATCTCCACTCTGCAATAAAGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000027518.12 ENSMUST00000189225.2 |
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| CDS-3UTR CCA 90 bp | AGCAGTAAAGGAAGGGAAAGATCTTTATTGCAGAGTGGAGATTATAAAAAGGAACCTGCAAGCAGCTGTTaGCACAGAGTAGCCCCTTTG | + |
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Preference number: 4 (lower is better) Translates to: SSKGRERSLLQSGDYKKEPASSC*HRVAPL Trigger: CAAAGGGGCTACTCTGTGCCAACAGCTGCTTGCAGG...TTCCTTTTTATAATCTCCACTCTGCAATAAAGATCTTTCCCTTCCTTTACTGCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027518.12 |
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| CDS-3UTR TCA 90 bp | GGGAAAGATCTTTATTGCAGAGTGGAGATTATAAAAAGGAAAAAGACACCATTCCTTCATCCAGGACGTTaGCTCTCTTCAAGGAGCTCC | + |
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Preference number: 4 (lower is better) Translates to: GKDLYCRVEIIKRKKTPFLHPGR*LSSRSS Trigger: GGAGCTCCTTGAAGAGAGTCAACGTCCTGGATGAAG...GAATGGTGTCTTTTTCCTTTTTATAATCTCCACTCTGCAATAAAGATCTTTCCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000027518.12 ENSMUST00000189225.2 |
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| CDS-3UTR GCA 90 bp | GAAGGGAAAGATCTTTATTGCAGAGTGGAGATTATAAAAAGGAAAAAGACACCATGTCCCTTGGACATCTaGACAGTGCTCCTGCAAGCA | + |
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Preference number: 4 (lower is better) Translates to: EGKDLYCRVEIIKRKKTPCPLDI*TVLLQA Trigger: TGCTTGCAGGAGCACTGTGCAGATGTCCAAGGGACA...TGGTGTCTTTTTCCTTTTTATAATCTCCACTCTGCAATAAAGATCTTTCCCTTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000027518.12 |
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| CDS-3UTR GCA 90 bp | TGCAGAGTGGAGATTATAAAAAGGAAAAAGACACCATTCTCCATGCCTTTCTTCTCGTCTGTGGGATCTTaGCATGTCCCCAAACATCAT | + |
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Preference number: 4 (lower is better) Translates to: CRVEIIKRKKTPFSMPFFSSVGS*HVPKHH Trigger: ATGATGTTTGGGGACATGGCAAGATCCCACAGACGA...GAAGAAAGGCATGGAGAATGGTGTCTTTTTCCTTTTTATAATCTCCACTCTGCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000027518.12 ENSMUST00000176708.8 ENSMUST00000189225.2 |
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| CDS-3UTR CCA 90 bp | GGAAGGGAAAGATCTTTATTGCAGAGTGGAGATTATAAAAAGGAAAAAGACACCTTTGGAAGGCACAGGTaGAGGGATCACCAGAATCTC | + |
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Preference number: 4 (lower is better) Translates to: GRERSLLQSGDYKKEKDTFGRHR*RDHQNL Trigger: GAGATTCTGGTGATCCCTCCACCTGTGCCTTCCAAA...GGTGTCTTTTTCCTTTTTATAATCTCCACTCTGCAATAAAGATCTTTCCCTTCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000027518.12 ENSMUST00000189225.2 |
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| CDS-3UTR CCA 90 bp | GAAGGGAAAGATCTTTATTGCAGAGTGGAGATTATAAAAAGGAAAAAGACACCATTTGGAAGGCACAGGTaGAGGGATCACCAGAATCTC | + |
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Preference number: 4 (lower is better) Translates to: EGKDLYCRVEIIKRKKTPFGRHR*RDHQNL Trigger: GAGATTCTGGTGATCCCTCCACCTGTGCCTTCCAAA...TGGTGTCTTTTTCCTTTTTATAATCTCCACTCTGCAATAAAGATCTTTCCCTTC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000027518.12 ENSMUST00000189225.2 |
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| CDS-3UTR CCA 90 bp | TATTGCAGAGTGGAGATTATAAAAAGGAAAAAGACACCATTCTCCATGCCTTTCACTCTTGCTCTGCGATaGAGGTTCAGGAACCTTCTA | + |
|
Preference number: 4 (lower is better) Translates to: YCRVEIIKRKKTPFSMPFTLALR*RFRNLL Trigger: TAGAAGGTTCCTGAACCTCCATCGCAGAGCAAGAGT...GAAAGGCATGGAGAATGGTGTCTTTTTCCTTTTTATAATCTCCACTCTGCAATA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000027518.12 ENSMUST00000176708.8 |
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| CDS-3UTR GCA 90 bp | TTATTGCAGAGTGGAGATTATAAAAAGGAAAAAGACACCATTCTCCATGCCTTTTCGTCTGTGGGATCTTaGCATGTCCCCAAACATCAT | + |
|
Preference number: 4 (lower is better) Translates to: LLQSGDYKKEKDTILHAFSSVGS*HVPKHH Trigger: ATGATGTTTGGGGACATGGCAAGATCCCACAGACGA...AAAGGCATGGAGAATGGTGTCTTTTTCCTTTTTATAATCTCCACTCTGCAATAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 3 transcripts: ENSMUST00000027518.12 ENSMUST00000176708.8 ENSMUST00000189225.2 |
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| CDS-3UTR GCA 90 bp | GAAGGGAAAGATCTTTATTGCAGAGTGGAGATTATAAAAAGGAAAAAGACACCATCGTCTGTGGGATCTTaGCATGTCCCCAAACATCAT | + |
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Preference number: 4 (lower is better) Translates to: EGKDLYCRVEIIKRKKTPSSVGS*HVPKHH Trigger: ATGATGTTTGGGGACATGGCAAGATCCCACAGACGA...TGGTGTCTTTTTCCTTTTTATAATCTCCACTCTGCAATAAAGATCTTTCCCTTC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000027518.12 ENSMUST00000176708.8 ENSMUST00000189225.2 |
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| CDS-3UTR CCA 90 bp | TTATTGCAGAGTGGAGATTATAAAAAGGAAAAAGACACCATTCTCCATGCCTTTACTCTTGCTCTGCGATaGAGGTTCAGGAACCTTCTA | + |
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Preference number: 4 (lower is better) Translates to: LLQSGDYKKEKDTILHAFTLALR*RFRNLL Trigger: TAGAAGGTTCCTGAACCTCCATCGCAGAGCAAGAGT...AAAGGCATGGAGAATGGTGTCTTTTTCCTTTTTATAATCTCCACTCTGCAATAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000027518.12 ENSMUST00000176708.8 |
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| CDS-3UTR TCA 90 bp | GATCTTTATTGCAGAGTGGAGATTATAAAAAGGAAAAAGACACCATTCTCCATGAGGCATGTGGTTTCCTaGACACTGAACTCTAAGTTC | + |
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Preference number: 4 (lower is better) Translates to: DLYCRVEIIKRKKTPFSMRHVVS*TLNSKF Trigger: GAACTTAGAGTTCAGTGTTCAGGAAACCACATGCCT...CATGGAGAATGGTGTCTTTTTCCTTTTTATAATCTCCACTCTGCAATAAAGATC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000027518.12 ENSMUST00000189225.2 |
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| CDS-3UTR CCA 90 bp | TGCAGAGTGGAGATTATAAAAAGGAAAAAGACACCATTCTCCATGCCTTTCTTCGGAATTGTTCACTTCTaGATTCATCAGAAAGAAAAC | + |
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Preference number: 4 (lower is better) Translates to: CRVEIIKRKKTPFSMPFFGIVHF*IHQKEN Trigger: GTTTTCTTTCTGATGAATCCAGAAGTGAACAATTCC...GAAGAAAGGCATGGAGAATGGTGTCTTTTTCCTTTTTATAATCTCCACTCTGCA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000027518.12 ENSMUST00000176708.8 |
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| CDS-3UTR CCA 90 bp | GGAAGGGAAAGATCTTTATTGCAGAGTGGAGATTATAAAAAGGAAAAAGACACCGGAATTGTTCACTTCTaGATTCATCAGAAAGAAAAC | + |
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Preference number: 4 (lower is better) Translates to: GRERSLLQSGDYKKEKDTGIVHF*IHQKEN Trigger: GTTTTCTTTCTGATGAATCCAGAAGTGAACAATTCC...GGTGTCTTTTTCCTTTTTATAATCTCCACTCTGCAATAAAGATCTTTCCCTTCC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000027518.12 ENSMUST00000176708.8 |
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| CDS CCA 90 bp | AGGACGCCCAGCGGCAGTGAGCCCACACATCCTTTACCTGTCCCTTaGACATCTGCACAGTGCTCCTGCAAGCAGCTGTTGGCACAGAGT | + |
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Preference number: 5 (lower is better) Translates to: RTPSGSEPTHPLPVP*TSAQCSCKQLLAQS Trigger: ACTCTGTGCCAACAGCTGCTTGCAGGAGCACTGTGCAGATGTCCAAGGGACAGGTAAAGGATGTGTGGGCTCACTGCCGCTGGGCGTCCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027518.12 |
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| CDS TCA 90 bp | GGTAAGGACTCAGGGACTGCGAGTTCACCTTTGCCACTGAGGCACTaGGAGCTTCCTGCAGAGAGGAAGGGTCGTAGTCGTACACCGGGA | + |
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Preference number: 5 (lower is better) Translates to: GKDSGTASSPLPLRH*ELPAERKGRSRTPG Trigger: TCCCGGTGTACGACTACGACCCTTCCTCTCTGCAGGAAGCTCTCAGTGCCTCAGTGGCAAAGGTGAACTCGCAGTCCCTGAGTCCTTACC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027518.12 |
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| CDS GCA 90 bp | GGTCGTAGTCGTACACCGGGAAACCTGTGGCACACCAGTAGTGCATaGCCAGCACCAACAAAGCCAGCGTCTTCAGCATTGCCTGCTCCA | + |
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Preference number: 5 (lower is better) Translates to: GRSRTPGNLWHTSSA*PAPTKPASSALPAP Trigger: TGGAGCAGGCAATGCTGAAGACGCTGGCTTTGTTGGTGCTGGGCATGCACTACTGGTGTGCCACAGGTTTCCCGGTGTACGACTACGACC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027518.12 |
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| CDS CCA 90 bp | CTTCCTGCAGAGAGGAAGGGTCGTAGTCGTACACCGGGAAACCTGTaGCACACCAGTAGTGCATGCCCAGCACCAACAAAGCCAGCGTCT | + |
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Preference number: 5 (lower is better) Translates to: LPAERKGRSRTPGNL*HTSSACPAPTKPAS Trigger: AGACGCTGGCTTTGTTGGTGCTGGGCATGCACTACTGGTGTGCCACAGGTTTCCCGGTGTACGACTACGACCCTTCCTCTCTGCAGGAAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027518.12 |
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| CDS GCA 90 bp | CCCACACATCCTTTACCTGTCCCTTGGACATCTGCACAGTGCTCCTaGAAGCAGCTGTTGGCACAGAGTAGCCCCTTTGGAAGGCACAGG | + |
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Preference number: 5 (lower is better) Translates to: PTHPLPVPWTSAQCS*KQLLAQSSPFGRHR Trigger: CCTGTGCCTTCCAAAGGGGCTACTCTGTGCCAACAGCTGCTTGCAGGAGCACTGTGCAGATGTCCAAGGGACAGGTAAAGGATGTGTGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027518.12 |
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| CDS TCA 90 bp | CCGAAACAGGTAAGGACTCAGGGACTGCGAGTTCACCTTTGCCACTaGGGCACTGAGAGCTTCCTGCAGAGAGGAAGGGTCGTAGTCGTA | + |
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Preference number: 5 (lower is better) Translates to: PKQVRTQGLRVHLCH*GTESFLQRGRVVVV Trigger: TACGACTACGACCCTTCCTCTCTGCAGGAAGCTCTCAGTGCCTCAGTGGCAAAGGTGAACTCGCAGTCCCTGAGTCCTTACCTGTTTCGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027518.12 |
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| CDS TCA 90 bp | GGAGGTTCAGGAACCTTCTATGGGCGGGAGGCTGTCCCCTCCTCATaGTTTCAAGTGACCGGTCACGGAATTGTTCACTTCTGGATTCAT | + |
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Preference number: 5 (lower is better) Translates to: GGSGTFYGREAVPSS*FQVTGHGIVHFWIH Trigger: ATGAATCCAGAAGTGAACAATTCCGTGACCGGTCACTTGAAATCATGAGGAGGGGACAGCCTCCCGCCCATAGAAGGTTCCTGAACCTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027518.12 ENSMUST00000176708.8 |
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| CDS TCA 90 bp | GCACAGGTGGAGGGATCACCAGAATCTCTCAGGCATGTGGTTTCCTaGACACTGAACTCTAAGTTCATGACCAATGTGTCTTCATCCAGG | + |
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Preference number: 5 (lower is better) Translates to: AQVEGSPESLRHVVS*TLNSKFMTNVSSSR Trigger: CCTGGATGAAGACACATTGGTCATGAACTTAGAGTTCAGTGTTCAGGAAACCACATGCCTGAGAGATTCTGGTGATCCCTCCACCTGTGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027518.12 ENSMUST00000189225.2 |
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| CDS TCA 90 bp | GAACCTTCTATGGGCGGGAGGCTGTCCCCTCCTCATGATTTCAAGTaGCCGGTCACGGAATTGTTCACTTCTGGATTCATCAGAAAGAAA | + |
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Preference number: 5 (lower is better) Translates to: EPSMGGRLSPPHDFK*PVTELFTSGFIRKK Trigger: TTTCTTTCTGATGAATCCAGAAGTGAACAATTCCGTGACCGGTCACTTGAAATCATGAGGAGGGGACAGCCTCCCGCCCATAGAAGGTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027518.12 ENSMUST00000176708.8 |
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| CDS-3UTR CAA 90 bp | TCTTTATTGCAGAGTGGAGATTATAAAAAGGAAAAAGACACCATTCTCCATGCCCACAGAGTAGCCCCTTaGGAAGGCACAGGTGGAGGG | + |
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Preference number: 5 (lower is better) Translates to: SLLQSGDYKKEKDTILHAHRVAP*EGTGGG Trigger: CCCTCCACCTGTGCCTTCCAAAGGGGCTACTCTGTG...GGCATGGAGAATGGTGTCTTTTTCCTTTTTATAATCTCCACTCTGCAATAAAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000027518.12 ENSMUST00000189225.2 |
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| CDS-3UTR CAA 90 bp | GGGAAAGATCTTTATTGCAGAGTGGAGATTATAAAAAGGAAAAAGACACCATTCCACAGAGTAGCCCCTTaGGAAGGCACAGGTGGAGGG | + |
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Preference number: 5 (lower is better) Translates to: GKDLYCRVEIIKRKKTPFHRVAP*EGTGGG Trigger: CCCTCCACCTGTGCCTTCCAAAGGGGCTACTCTGTG...GAATGGTGTCTTTTTCCTTTTTATAATCTCCACTCTGCAATAAAGATCTTTCCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000027518.12 ENSMUST00000189225.2 |
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| CDS-3UTR CAA 90 bp | GGAAGGGAAAGATCTTTATTGCAGAGTGGAGATTATAAAAAGGAAAAAGACACCTCCTGCAAGCAGCTGTaGGCACAGAGTAGCCCCTTT | + |
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Preference number: 5 (lower is better) Translates to: GRERSLLQSGDYKKEKDTSCKQL*AQSSPF Trigger: AAAGGGGCTACTCTGTGCCAACAGCTGCTTGCAGGA...GGTGTCTTTTTCCTTTTTATAATCTCCACTCTGCAATAAAGATCTTTCCCTTCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000027518.12 |
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| CDS-3UTR CAA 90 bp | TTGCAGAGTGGAGATTATAAAAAGGAAAAAGACACCATTCTCCATGCCTTTCTTATCTCCTCACTGCTGTaGGACTCAGATGAGGACGCC | + |
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Preference number: 5 (lower is better) Translates to: LQSGDYKKEKDTILHAFLISSLL*DSDEDA Trigger: GGCGTCCTCATCTGAGTCCAACAGCAGTGAGGAGAT...AAGAAAGGCATGGAGAATGGTGTCTTTTTCCTTTTTATAATCTCCACTCTGCAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000027518.12 ENSMUST00000176708.8 |
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| CDS-3UTR CAA 90 bp | CTTTATTGCAGAGTGGAGATTATAAAAAGGAAAAAGACACCATTCTCCATGCCTTCCTTTACCTGTCCCTaGGACATCTGCACAGTGCTC | + |
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Preference number: 5 (lower is better) Translates to: LYCRVEIIKRKKTPFSMPSFTCP*DICTVL Trigger: GAGCACTGTGCAGATGTCCAAGGGACAGGTAAAGGA...AGGCATGGAGAATGGTGTCTTTTTCCTTTTTATAATCTCCACTCTGCAATAAAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000027518.12 |
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| CDS-3UTR CAA 90 bp | CTTTATTGCAGAGTGGAGATTATAAAAAGGAAAAAGACACCATTCTCCATGCCTAGCCAGAATTTACTCTaGCTCTGCGATGGAGGTTCA | + |
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Preference number: 5 (lower is better) Translates to: LYCRVEIIKRKKTPFSMPSQNLL*LCDGGS Trigger: TGAACCTCCATCGCAGAGCAAGAGTAAATTCTGGCT...AGGCATGGAGAATGGTGTCTTTTTCCTTTTTATAATCTCCACTCTGCAATAAAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000027518.12 ENSMUST00000176708.8 |
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| CDS-3UTR CAA 90 bp | TTATTGCAGAGTGGAGATTATAAAAAGGAAAAAGACACCATTCTCCATGCCTTTAGCCAGAATTTACTCTaGCTCTGCGATGGAGGTTCA | + |
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Preference number: 5 (lower is better) Translates to: LLQSGDYKKEKDTILHAFSQNLL*LCDGGS Trigger: TGAACCTCCATCGCAGAGCAAGAGTAAATTCTGGCT...AAAGGCATGGAGAATGGTGTCTTTTTCCTTTTTATAATCTCCACTCTGCAATAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000027518.12 ENSMUST00000176708.8 |
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| CDS CAA 90 bp | CTGCACAGTGCTCCTGCAAGCAGCTGTTGGCACAGAGTAGCCCCTTaGGAAGGCACAGGTGGAGGGATCACCAGAATCTCTCAGGCATGT | + |
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Preference number: 6 (lower is better) Translates to: LHSAPASSCWHRVAP*EGTGGGITRISQAC Trigger: ACATGCCTGAGAGATTCTGGTGATCCCTCCACCTGTGCCTTCCAAAGGGGCTACTCTGTGCCAACAGCTGCTTGCAGGAGCACTGTGCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027518.12 |
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| CDS TCA 72 bp | GTAAGGACTCAGGGACTGCGAGTTCACCTTTGCCACTaGGGCACTGAGAGCTTCCTGCAGAGAGGAAGGGTC | + |
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Preference number: 6 (lower is better) Translates to: VRTQGLRVHLCH*GTESFLQRGRV Trigger: GACCCTTCCTCTCTGCAGGAAGCTCTCAGTGCCTCAGTGGCAAAGGTGAACTCGCAGTCCCTGAGTCCTTAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027518.12 |
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| CDS CCA 72 bp | GAGAGGAAGGGTCGTAGTCGTACACCGGGAAACCTGTaGCACACCAGTAGTGCATGCCCAGCACCAACAAAG | + |
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Preference number: 6 (lower is better) Translates to: ERKGRSRTPGNL*HTSSACPAPTK Trigger: CTTTGTTGGTGCTGGGCATGCACTACTGGTGTGCCACAGGTTTCCCGGTGTACGACTACGACCCTTCCTCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027518.12 |
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| CDS CCA 72 bp | AGCGGCAGTGAGCCCACACATCCTTTACCTGTCCCTTaGACATCTGCACAGTGCTCCTGCAAGCAGCTGTTG | + |
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Preference number: 6 (lower is better) Translates to: SGSEPTHPLPVP*TSAQCSCKQLL Trigger: CAACAGCTGCTTGCAGGAGCACTGTGCAGATGTCCAAGGGACAGGTAAAGGATGTGTGGGCTCACTGCCGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027518.12 |
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| CDS GCA 72 bp | CCTTTACCTGTCCCTTGGACATCTGCACAGTGCTCCTaGAAGCAGCTGTTGGCACAGAGTAGCCCCTTTGGA | + |
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Preference number: 6 (lower is better) Translates to: PLPVPWTSAQCS*KQLLAQSSPFG Trigger: TCCAAAGGGGCTACTCTGTGCCAACAGCTGCTTGCAGGAGCACTGTGCAGATGTCCAAGGGACAGGTAAAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027518.12 |
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| CDS CCA 72 bp | ACTCTTGCTCTGCGATGGAGGTTCAGGAACCTTCTATaGGCGGGAGGCTGTCCCCTCCTCATGATTTCAAGT | + |
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Preference number: 6 (lower is better) Translates to: TLALRWRFRNLL*AGGCPLLMISS Trigger: ACTTGAAATCATGAGGAGGGGACAGCCTCCCGCCCATAGAAGGTTCCTGAACCTCCATCGCAGAGCAAGAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027518.12 ENSMUST00000176708.8 |
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| CDS TCA 72 bp | ATGGGCGGGAGGCTGTCCCCTCCTCATGATTTCAAGTaGCCGGTCACGGAATTGTTCACTTCTGGATTCATC | + |
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Preference number: 6 (lower is better) Translates to: MGGRLSPPHDFK*PVTELFTSGFI Trigger: GATGAATCCAGAAGTGAACAATTCCGTGACCGGTCACTTGAAATCATGAGGAGGGGACAGCCTCCCGCCCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027518.12 ENSMUST00000176708.8 |
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| CDS CAA 72 bp | TGCCATGTCCCCAAACATCATCACAGAGTAGCCCCTTaGGAAGGCACAGGTGGAGGGATCACCAGAATCTCT | + |
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Preference number: 6 (lower is better) Translates to: CHVPKHHHRVAP*EGTGGGITRIS Trigger: AGAGATTCTGGTGATCCCTCCACCTGTGCCTTCCAAAGGGGCTACTCTGTGATGATGTTTGGGGACATGGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000189225.2 |
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| CDS CAA 72 bp | TCTAAGTTCATGACCAATGTGTCTTCATCCAGGACGTaGACTCTCTTCAAGGAGCTCCGGGTCGCCCGAAAC | + |
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Preference number: 6 (lower is better) Translates to: SKFMTNVSSSRT*TLFKELRVARN Trigger: GTTTCGGGCGACCCGGAGCTCCTTGAAGAGAGTCAACGTCCTGGATGAAGACACATTGGTCATGAACTTAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027518.12 ENSMUST00000189225.2 |
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| CDS CAA 90 bp | GAGAAGCAGACTCAAGTAGATAATCATTTCTTCGTCTGTGGGATCTaGCCATGTCCCCAAACATCATCACAGAGTAGCCCCTTTGGAAGG | + |
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Preference number: 6 (lower is better) Translates to: EKQTQVDNHFFVCGI*PCPQTSSQSSPFGR Trigger: CCTTCCAAAGGGGCTACTCTGTGATGATGTTTGGGGACATGGCAAGATCCCACAGACGAAGAAATGATTATCTACTTGAGTCTGCTTCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000189225.2 |
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| CDS TCA 72 bp | GAGGGATCACCAGAATCTCTCAGGCATGTGGTTTCCTaGACACTGAACTCTAAGTTCATGACCAATGTGTCT | + |
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Preference number: 6 (lower is better) Translates to: EGSPESLRHVVS*TLNSKFMTNVS Trigger: AGACACATTGGTCATGAACTTAGAGTTCAGTGTTCAGGAAACCACATGCCTGAGAGATTCTGGTGATCCCTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027518.12 ENSMUST00000189225.2 |
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| CDS CAA 72 bp | ACTCAAGTAGATAATCATTTCTTCGTCTGTGGGATCTaGCCATGTCCCCAAACATCATCACAGAGTAGCCCC | + |
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Preference number: 6 (lower is better) Translates to: TQVDNHFFVCGI*PCPQTSSQSSP Trigger: GGGGCTACTCTGTGATGATGTTTGGGGACATGGCAAGATCCCACAGACGAAGAAATGATTATCTACTTGAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000189225.2 |
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