Pregenerated sensors for SPOPL (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026771Ensembl transcript IDs: ENSMUST00000028110.11, ENSMUST00000123843.3, ENSMUST00000132484.7, ENSMUST00000132827.8
Found 62 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ATGGTTTGTATTGGAATCCTTCGGGACCTGGGGAGGAAAGGCAAATaGATTTCCTACTGTCCACACAAGACTCAAGACTGCTTTAACCTT | + |
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Preference number: 1 (lower is better) Translates to: MVCIGILRDLGRKGK*ISYCPHKTQDCFNL Trigger: AAGGTTAAAGCAGTCTTGAGTCTTGTGTGGACAGTAGGAAATGCATTTGCCTTTCCTCCCCAGGTCCCGAAGGATTCCAATACAAACCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028110.11 |
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| 3UTR CCA 90 bp | TATGATTCTGTGAGTGTAATGGTTGGTATTGTACCATCCAAAAAGTaGGCATTCAGCAAAACACTGATAGAGATCACAGTGTTGGAAATT | + |
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Preference number: 1 (lower is better) Translates to: YDSVSVMVGIVPSKK*AFSKTLIEITVLEI Trigger: AATTTCCAACACTGTGATCTCTATCAGTGTTTTGCTGAATGCCCACTTTTTGGATGGTACAATACCAACCATTACACTCACAGAATCATA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000132484.7 |
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| 3UTR CAA 90 bp | GCTTCTGTCCGTGGACGAGAGACAGAAGCGGCTGTTACTTATGGTTaGTATTGGAATCCTTCGGGACCTGGGGAGGAAAGGCAAATGCAT | + |
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Preference number: 2 (lower is better) Translates to: ASVRGRETEAAVTYG*YWNPSGPGEERQMH Trigger: ATGCATTTGCCTTTCCTCCCCAGGTCCCGAAGGATTCCAATACAAACCATAAGTAACAGCCGCTTCTGTCTCTCGTCCACGGACAGAAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028110.11 ENSMUST00000132484.7 |
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| 3UTR-3UTR CCA 90 bp | TTACTGCATTGTGGAGCTAGTGCAATCCTGCAGAGCCTTGGCAAACTGACAAGGGAATCCTTCGGGACCTaGGGAGGAAAGGCAAATGCA | + |
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Preference number: 2 (lower is better) Translates to: LLHCGASAILQSLGKLTRESFGT*GGKANA Trigger: TGCATTTGCCTTTCCTCCCCAGGTCCCGAAGGATTC...CCTTGTCAGTTTGCCAAGGCTCTGCAGGATTGCACTAGCTCCACAATGCAGTAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028110.11 ENSMUST00000132484.7 |
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| 3UTR-3UTR CCA 90 bp | CCAGCTTCTGTCCGTGGACGAGAGACAGAAGCGGCTGTTACTTATGGTTTGTATGAATCCTTCGGGACCTaGGGAGGAAAGGCAAATGCA | + |
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Preference number: 2 (lower is better) Translates to: PASVRGRETEAAVTYGLYESFGT*GGKANA Trigger: TGCATTTGCCTTTCCTCCCCAGGTCCCGAAGGATTC...ATACAAACCATAAGTAACAGCCGCTTCTGTCTCTCGTCCACGGACAGAAGCTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028110.11 ENSMUST00000132484.7 |
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| 3UTR-3UTR GCA 90 bp | GACGAGAGACAGAAGCGGCTGTTACTTATGGTTTGTATTGGAATCCTTCGGGACAACTGGGGATCGAGCTaGAAGCACAGACTTATGAGC | + |
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Preference number: 2 (lower is better) Translates to: DERQKRLLLMVCIGILRDNWGSS*KHRLMS Trigger: GCTCATAAGTCTGTGCTTGCAGCTCGATCCCCAGTT...GTCCCGAAGGATTCCAATACAAACCATAAGTAACAGCCGCTTCTGTCTCTCGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028110.11 |
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| 3UTR-3UTR TCA 90 bp | TTACTGCATTGTGGAGCTAGTGCAATCCTGCAGAGCCTTGGCAAACTGACAAGGCATGAATTATCCATGTaGAAGCAAGCAATGCCTTTC | + |
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Preference number: 2 (lower is better) Translates to: LLHCGASAILQSLGKLTRHELSM*KQAMPF Trigger: GAAAGGCATTGCTTGCTTTCACATGGATAATTCATG...CCTTGTCAGTTTGCCAAGGCTCTGCAGGATTGCACTAGCTCCACAATGCAGTAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028110.11 ENSMUST00000132484.7 |
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| 3UTR-3UTR GCA 90 bp | TGTCCACACAAGACTCAAGACTGCTTTAACCTTTTGCGTGGAATACCAAACTGTAACTGGGGATCGAGCTaGAAGCACAGACTTATGAGC | + |
|
Preference number: 2 (lower is better) Translates to: CPHKTQDCFNLLRGIPNCNWGSS*KHRLMS Trigger: GCTCATAAGTCTGTGCTTGCAGCTCGATCCCCAGTT...ACAGTTTGGTATTCCACGCAAAAGGTTAAAGCAGTCTTGAGTCTTGTGTGGACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028110.11 ENSMUST00000132827.8 |
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| 3UTR-3UTR GCA 90 bp | GACGAGAGACAGAAGCGGCTGTTACTTATGGTTTGTATTGGAATCCTTCGGGACCACAAGACTCAAGACTaGTTTAACCTTTTGCGTGGA | + |
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Preference number: 2 (lower is better) Translates to: DERQKRLLLMVCIGILRDHKTQD*FNLLRG Trigger: TCCACGCAAAAGGTTAAAGCAGTCTTGAGTCTTGTG...GTCCCGAAGGATTCCAATACAAACCATAAGTAACAGCCGCTTCTGTCTCTCGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028110.11 |
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| 3UTR-3UTR GCA 90 bp | TTACTGCATTGTGGAGCTAGTGCAATCCTGCAGAGCCTTGGCAAACTGACAAGGAGTGCACATATATCTTaGTTAATCGGCCCACTCATT | + |
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Preference number: 2 (lower is better) Translates to: LLHCGASAILQSLGKLTRSAHIS*LIGPLI Trigger: AATGAGTGGGCCGATTAAGCAAGATATATGTGCACT...CCTTGTCAGTTTGCCAAGGCTCTGCAGGATTGCACTAGCTCCACAATGCAGTAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000132484.7 |
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| 3UTR-3UTR GCA 90 bp | CTGTTACTTATGGTTTGTATTGGAATCCTTCGGGACCTGGGGAGGAAAGGCAAAACTGCTTTAACCTTTTaGGTGGAATACCAAACTGTG | + |
|
Preference number: 2 (lower is better) Translates to: LLLMVCIGILRDLGRKGKTALTF*VEYQTV Trigger: CACAGTTTGGTATTCCACGCAAAAGGTTAAAGCAGT...TTTGCCTTTCCTCCCCAGGTCCCGAAGGATTCCAATACAAACCATAAGTAACAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028110.11 |
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| 3UTR-3UTR TCA 90 bp | CATTCCATGAACACTCAAGTTGGAGCTCACAATCTGTATATAAAAAGGTTTGTACATGAATTATCCATGTaGAAGCAAGCAATGCCTTTC | + |
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Preference number: 2 (lower is better) Translates to: HSMNTQVGAHNLYIKRFVHELSM*KQAMPF Trigger: GAAAGGCATTGCTTGCTTTCACATGGATAATTCATG...TACAAACCTTTTTATATACAGATTGTGAGCTCCAACTTGAGTGTTCATGGAATG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000132484.7 |
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| 3UTR-3UTR TCA 90 bp | CATTCCATGAACACTCAAGTTGGAGCTCACAATCTGTATATAAAAAGGTTTGTATTGTCAATAGATGAGTaGTCAACTAATAGCTCTCCT | + |
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Preference number: 2 (lower is better) Translates to: HSMNTQVGAHNLYIKRFVLSIDE*STNSSP Trigger: AGGAGAGCTATTAGTTGATCACTCATCTATTGACAA...TACAAACCTTTTTATATACAGATTGTGAGCTCCAACTTGAGTGTTCATGGAATG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000132484.7 |
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| 3UTR-3UTR TCA 90 bp | CATTCCATGAACACTCAAGTTGGAGCTCACAATCTGTATATAAAAAGGTTTGTATACTCTCCTGTATGCTaGAAGTGCTGTGTTTATTTT | + |
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Preference number: 2 (lower is better) Translates to: HSMNTQVGAHNLYIKRFVYSPVC*KCCVYF Trigger: AAAATAAACACAGCACTTTCAGCATACAGGAGAGTA...TACAAACCTTTTTATATACAGATTGTGAGCTCCAACTTGAGTGTTCATGGAATG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000132484.7 |
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| 3UTR-3UTR GCA 90 bp | TGTGTTGGTGTTGCTATGGATCCAACCTATAGATCACAAATATTCATAAGCATTGCACCTTCATATTTGTaGTCCAAATATCAAAACACA | + |
|
Preference number: 2 (lower is better) Translates to: CVGVAMDPTYRSQIFISIAPSYL*SKYQNT Trigger: TGTGTTTTGATATTTGGAGCACAAATATGAAGGTGC...AATGCTTATGAATATTTGTGATCTATAGGTTGGATCCATAGCAACACCAACACA 34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000132484.7 |
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| 3UTR-3UTR CAA 90 bp | CGTGAGATCGGCCCCTCCATCCCAAGCGCCTGTGTCTGCCAGAGCCGGTGTGAGGTTTTGGCCGGACCTTaGAGTACACCTCGGGATAGT | + |
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Preference number: 3 (lower is better) Translates to: REIGPSIPSACVCQSRCEVLAGP*STPRDS Trigger: ACTATCCCGAGGTGTACTCAAAGGTCCGGCCAAAAC...CTCACACCGGCTCTGGCAGACACAGGCGCTTGGGATGGAGGGGCCGATCTCACG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000132484.7 |
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| 3UTR CCA 72 bp | TGTCCGTGGACGAGAGACAGAAGCGGCTGTTACTTATaGTTTGTATTGGAATCCTTCGGGACCTGGGGAGGA | + |
|
Preference number: 3 (lower is better) Translates to: CPWTRDRSGCYL*FVLESFGTWGG Trigger: TCCTCCCCAGGTCCCGAAGGATTCCAATACAAACCATAAGTAACAGCCGCTTCTGTCTCTCGTCCACGGACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028110.11 ENSMUST00000132484.7 |
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| 3UTR GCA 72 bp | ATTGGAATCCTTCGGGACCTGGGGAGGAAAGGCAAATaGATTTCCTACTGTCCACACAAGACTCAAGACTGC | + |
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Preference number: 3 (lower is better) Translates to: IGILRDLGRKGK*ISYCPHKTQDC Trigger: GCAGTCTTGAGTCTTGTGTGGACAGTAGGAAATGCATTTGCCTTTCCTCCCCAGGTCCCGAAGGATTCCAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028110.11 |
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| 3UTR CCA 72 bp | TGTGAAAGCAAGCAATGCCTTTCCAGCTTCTGTCCGTaGACGAGAGACAGAAGCGGCTGTTACTTATGGTTT | + |
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Preference number: 3 (lower is better) Translates to: CESKQCLSSFCP*TRDRSGCYLWF Trigger: AAACCATAAGTAACAGCCGCTTCTGTCTCTCGTCCACGGACAGAAGCTGGAAAGGCATTGCTTGCTTTCACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028110.11 ENSMUST00000132484.7 |
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| 3UTR-3UTR CAA 90 bp | TTACTGCATTGTGGAGCTAGTGCAATCCTGCAGAGCCTTGGCAAACTGACAAGGGCTGTTACTTATGGTTaGTATTGGAATCCTTCGGGA | + |
|
Preference number: 3 (lower is better) Translates to: LLHCGASAILQSLGKLTRAVTYG*YWNPSG Trigger: TCCCGAAGGATTCCAATACAAACCATAAGTAACAGC...CCTTGTCAGTTTGCCAAGGCTCTGCAGGATTGCACTAGCTCCACAATGCAGTAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028110.11 ENSMUST00000132484.7 |
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| 3UTR CCA 72 bp | AACTTAAACCAGAGCAGTGTATGGCCATCACTTACCTaGATGGCAACGGGCTCTTTAGTGTCTACACAACTG | + |
|
Preference number: 3 (lower is better) Translates to: NLNQSSVWPSLT*MATGSLVSTQL Trigger: CAGTTGTGTAGACACTAAAGAGCCCGTTGCCATCCAGGTAAGTGATGGCCATACACTGCTCTGGTTTAAGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028110.11 ENSMUST00000132484.7 |
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| 3UTR CCA 72 bp | TGTTACTTATGGTTTGTATTGGAATCCTTCGGGACCTaGGGAGGAAAGGCAAATGCATTTCCTACTGTCCAC | + |
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Preference number: 3 (lower is better) Translates to: CYLWFVLESFGT*GGKANAFPTVH Trigger: GTGGACAGTAGGAAATGCATTTGCCTTTCCTCCCCAGGTCCCGAAGGATTCCAATACAAACCATAAGTAACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028110.11 ENSMUST00000132484.7 |
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| 3UTR-3UTR CAA 90 bp | GGAAAGGCAAATGCATTTCCTACTGTCCACACAAGACTCAAGACTGCTTTAACCTCAGTTGCTTGGTTGTaGTTCCAGTTTTTCCCATCC | + |
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Preference number: 3 (lower is better) Translates to: GKANAFPTVHTRLKTALTSVAWL*FQFFPS Trigger: GGATGGGAAAAACTGGAACAACAACCAAGCAACTGA...GGTTAAAGCAGTCTTGAGTCTTGTGTGGACAGTAGGAAATGCATTTGCCTTTCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028110.11 ENSMUST00000132827.8 |
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| 3UTR-3UTR CAA 90 bp | TGTCCACACAAGACTCAAGACTGCTTTAACCTTTTGCGTGGAATACCAAACTGTTCAGTTGCTTGGTTGTaGTTCCAGTTTTTCCCATCC | + |
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Preference number: 3 (lower is better) Translates to: CPHKTQDCFNLLRGIPNCSVAWL*FQFFPS Trigger: GGATGGGAAAAACTGGAACAACAACCAAGCAACTGA...ACAGTTTGGTATTCCACGCAAAAGGTTAAAGCAGTCTTGAGTCTTGTGTGGACA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000028110.11 ENSMUST00000132827.8 |
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| 3UTR-3UTR CAA 90 bp | GTCACATTTTTGAGGATTACACTGTCTTCTGGCAATCCACTGTCTTTTCAAATAATTACTGGCCCTTTTTaGATTTTCCGGCTGCTCCCC | + |
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Preference number: 3 (lower is better) Translates to: VTFLRITLSSGNPLSFQIITGPF*IFRLLP Trigger: GGGGAGCAGCCGGAAAATCAAAAAAGGGCCAGTAAT...TATTTGAAAAGACAGTGGATTGCCAGAAGACAGTGTAATCCTCAAAAATGTGAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000132484.7 |
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| 3UTR CCA 72 bp | GTGAGTGTAATGGTTGGTATTGTACCATCCAAAAAGTaGGCATTCAGCAAAACACTGATAGAGATCACAGTG | + |
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Preference number: 3 (lower is better) Translates to: VSVMVGIVPSKK*AFSKTLIEITV Trigger: CACTGTGATCTCTATCAGTGTTTTGCTGAATGCCCACTTTTTGGATGGTACAATACCAACCATTACACTCAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000132484.7 |
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| 3UTR-3UTR CAA 90 bp | TGTCCACACAAGACTCAAGACTGCTTTAACCTTTTGCGTGGAATACCAAACTGTTTTCCATTATGTCAGTaGCTTGGTTGTTGTTCCAGT | + |
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Preference number: 3 (lower is better) Translates to: CPHKTQDCFNLLRGIPNCFPLCQ*LGCCSS Trigger: ACTGGAACAACAACCAAGCAACTGACATAATGGAAA...ACAGTTTGGTATTCCACGCAAAAGGTTAAAGCAGTCTTGAGTCTTGTGTGGACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028110.11 ENSMUST00000132827.8 |
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| 3UTR-3UTR CAA 90 bp | GTCACATTTTTGAGGATTACACTGTCTTCTGGCAATCCACTGTCTTTTCAAATATCTACACAACTGAGATaGGACATGCCTGTGGCAATC | + |
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Preference number: 3 (lower is better) Translates to: VTFLRITLSSGNPLSFQISTQLR*DMPVAI Trigger: GATTGCCACAGGCATGTCCAATCTCAGTTGTGTAGA...TATTTGAAAAGACAGTGGATTGCCAGAAGACAGTGTAATCCTCAAAAATGTGAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000132484.7 |
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| 3UTR TCA 72 bp | GTGTTGGACATTGACTTCAGAGTTCTTATAACAATGTaGCAATGTATTCAACCCGGAGCGGAATCTTTGCTT | + |
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Preference number: 3 (lower is better) Translates to: VLDIDFRVLITM*QCIQPGAESLL Trigger: AAGCAAAGATTCCGCTCCGGGTTGAATACATTGTCACATTGTTATAAGAACTCTGAAGTCAATGTCCAACAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000132484.7 |
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| 3UTR-3UTR CAA 90 bp | TGTGTTGGTGTTGCTATGGATCCAACCTATAGATCACAAATATTCATAAGCATTGCTGTTACTTATGGTTaGTATTGGAATCCTTCGGGA | + |
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Preference number: 3 (lower is better) Translates to: CVGVAMDPTYRSQIFISIAVTYG*YWNPSG Trigger: TCCCGAAGGATTCCAATACAAACCATAAGTAACAGC...AATGCTTATGAATATTTGTGATCTATAGGTTGGATCCATAGCAACACCAACACA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000132484.7 |
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| 3UTR-3UTR CAA 90 bp | TGTGTTGGTGTTGCTATGGATCCAACCTATAGATCACAAATATTCATAAGCATTAAGTGCACATATATCTaGCTTAATCGGCCCACTCAT | + |
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Preference number: 3 (lower is better) Translates to: CVGVAMDPTYRSQIFISIKCTYI*LNRPTH Trigger: ATGAGTGGGCCGATTAAGCAAGATATATGTGCACTT...AATGCTTATGAATATTTGTGATCTATAGGTTGGATCCATAGCAACACCAACACA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000132484.7 |
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| 3UTR TCA 72 bp | TTTCTATTTTATAATGCAGAATGCTGGTCACATTTTTaGGGATTACACTGTCTTCTGGCAATCCACTGTCTT | + |
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Preference number: 3 (lower is better) Translates to: FLFYNAECWSHF*GLHCLLAIHCL Trigger: AAGACAGTGGATTGCCAGAAGACAGTGTAATCCTCAAAAATGTGACCAGCATTCTGCATTATAAAATAGAAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000132484.7 |
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| CDS-3UTR GCA 90 bp | CGTGAGATCGGCCCCTCCATCCCAAGCGCCTGTGTCTGCCAGAGCCGGTGTGAGAACTGGGGATCGAGCTaGAAGCACAGACTTATGAGC | + |
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Preference number: 4 (lower is better) Translates to: REIGPSIPSACVCQSRCENWGSS*KHRLMS Trigger: GCTCATAAGTCTGTGCTTGCAGCTCGATCCCCAGTT...CTCACACCGGCTCTGGCAGACACAGGCGCTTGGGATGGAGGGGCCGATCTCACG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000132484.7 |
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| CDS-3UTR GCA 90 bp | TGGTTTGTATTGGAATCCTTCGGGACCTGGGGAGGAAAGGCAAATGCATTTCCTCAGTGGAGGGGGAGGTaGCAGTTCTTTAGGGAGGGC | + |
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Preference number: 4 (lower is better) Translates to: WFVLESFGTWGGKANAFPQWRGR*QFFREG Trigger: GCCCTCCCTAAAGAACTGGCACCTCCCCCTCCACTG...AGGAAATGCATTTGCCTTTCCTCCCCAGGTCCCGAAGGATTCCAATACAAACCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028110.11 |
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| CDS-3UTR CCA 90 bp | TGGTTTGTATTGGAATCCTTCGGGACCTGGGGAGGAAAGGCAAATGCATTTCCTCAGCACCACTTGCAGTaGAGGGGGAGGTGCCAGTTC | + |
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Preference number: 4 (lower is better) Translates to: WFVLESFGTWGGKANAFPQHHLQ*RGRCQF Trigger: GAACTGGCACCTCCCCCTCCACTGCAAGTGGTGCTG...AGGAAATGCATTTGCCTTTCCTCCCCAGGTCCCGAAGGATTCCAATACAAACCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028110.11 |
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| 3UTR CAA 72 bp | CGTGGACGAGAGACAGAAGCGGCTGTTACTTATGGTTaGTATTGGAATCCTTCGGGACCTGGGGAGGAAAGG | + |
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Preference number: 4 (lower is better) Translates to: RGRETEAAVTYG*YWNPSGPGEER Trigger: CCTTTCCTCCCCAGGTCCCGAAGGATTCCAATACAAACCATAAGTAACAGCCGCTTCTGTCTCTCGTCCACG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028110.11 ENSMUST00000132484.7 |
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| CDS-3UTR GCA 90 bp | GGCAAATGCATTTCCTACTGTCCACACAAGACTCAAGACTGCTTTAACCTTTTGCAGTGGAGGGGGAGGTaGCAGTTCTTTAGGGAGGGC | + |
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Preference number: 4 (lower is better) Translates to: GKCISYCPHKTQDCFNLLQWRGR*QFFREG Trigger: GCCCTCCCTAAAGAACTGGCACCTCCCCCTCCACTG...CAAAAGGTTAAAGCAGTCTTGAGTCTTGTGTGGACAGTAGGAAATGCATTTGCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000028110.11 ENSMUST00000132827.8 |
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| CDS-3UTR CCA 90 bp | GGCAAATGCATTTCCTACTGTCCACACAAGACTCAAGACTGCTTTAACCTTTTGCAGCACCACTTGCAGTaGAGGGGGAGGTGCCAGTTC | + |
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Preference number: 4 (lower is better) Translates to: GKCISYCPHKTQDCFNLLQHHLQ*RGRCQF Trigger: GAACTGGCACCTCCCCCTCCACTGCAAGTGGTGCTG...CAAAAGGTTAAAGCAGTCTTGAGTCTTGTGTGGACAGTAGGAAATGCATTTGCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000028110.11 ENSMUST00000132827.8 |
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| CDS-3UTR CCA 90 bp | GACGAGAGACAGAAGCGGCTGTTACTTATGGTTTGTATTGGAATCCTTCGGGACATCTCCAGGCAGAGGTaGAGTAGGTTCCCGAGACAT | + |
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Preference number: 4 (lower is better) Translates to: DERQKRLLLMVCIGILRDISRQR*SRFPRH Trigger: ATGTCTCGGGAACCTACTCCACCTCTGCCTGGAGAT...GTCCCGAAGGATTCCAATACAAACCATAAGTAACAGCCGCTTCTGTCTCTCGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000132484.7 |
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| CDS-3UTR GCA 90 bp | TGTCCACACAAGACTCAAGACTGCTTTAACCTTTTGCGTGGAATACCAAACTGTGGGAGGGCAGTGCAATaGTTCCACCTCTTCTGCAAG | + |
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Preference number: 4 (lower is better) Translates to: CPHKTQDCFNLLRGIPNCGRAVQ*FHLFCK Trigger: CTTGCAGAAGAGGTGGAAGCATTGCACTGCCCTCCC...ACAGTTTGGTATTCCACGCAAAAGGTTAAAGCAGTCTTGAGTCTTGTGTGGACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028110.11 ENSMUST00000132827.8 |
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| CDS-3UTR GCA 90 bp | GGAAAGGCAAATGCATTTCCTACTGTCCACACAAGACTCAAGACTGCTTTAACCTGCTTCCACCTCTTCTaGAAGCAGTGTTGGAGATGC | + |
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Preference number: 4 (lower is better) Translates to: GKANAFPTVHTRLKTALTCFHLF*KQCWRC Trigger: GCATCTCCAACACTGCTTGCAGAAGAGGTGGAAGCA...GGTTAAAGCAGTCTTGAGTCTTGTGTGGACAGTAGGAAATGCATTTGCCTTTCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028110.11 ENSMUST00000132827.8 |
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| CDS-3UTR GCA 90 bp | TGGTTTGTATTGGAATCCTTCGGGACCTGGGGAGGAAAGGCAAATGCATTTCCTAAGCAGTGTTGGAGATaGTCACAGAATAACGTAAGC | + |
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Preference number: 4 (lower is better) Translates to: WFVLESFGTWGGKANAFPKQCWR*SQNNVS Trigger: GCTTACGTTATTCTGTGAGCATCTCCAACACTGCTT...AGGAAATGCATTTGCCTTTCCTCCCCAGGTCCCGAAGGATTCCAATACAAACCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028110.11 |
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| CDS-3UTR GCA 90 bp | TGTCCACACAAGACTCAAGACTGCTTTAACCTTTTGCGTGGAATACCAAACTGTTGCTTCCACCTCTTCTaGAAGCAGTGTTGGAGATGC | + |
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Preference number: 4 (lower is better) Translates to: CPHKTQDCFNLLRGIPNCCFHLF*KQCWRC Trigger: GCATCTCCAACACTGCTTGCAGAAGAGGTGGAAGCA...ACAGTTTGGTATTCCACGCAAAAGGTTAAAGCAGTCTTGAGTCTTGTGTGGACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028110.11 ENSMUST00000132827.8 |
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| CDS-3UTR GCA 90 bp | TTACTGCATTGTGGAGCTAGTGCAATCCTGCAGAGCCTTGGCAAACTGACAAGGACTGCTTTAACCTTTTaGGTGGAATACCAAACTGTG | + |
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Preference number: 4 (lower is better) Translates to: LLHCGASAILQSLGKLTRTALTF*VEYQTV Trigger: CACAGTTTGGTATTCCACGCAAAAGGTTAAAGCAGT...CCTTGTCAGTTTGCCAAGGCTCTGCAGGATTGCACTAGCTCCACAATGCAGTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000132484.7 |
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| CDS-3UTR CCA 90 bp | GACGAGAGACAGAAGCGGCTGTTACTTATGGTTTGTATTGGAATCCTTCGGGACTTCTGCAAGCAGTGTTaGAGATGCTCACAGAATAAC | + |
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Preference number: 4 (lower is better) Translates to: DERQKRLLLMVCIGILRDFCKQC*RCSQNN Trigger: GTTATTCTGTGAGCATCTCCAACACTGCTTGCAGAA...GTCCCGAAGGATTCCAATACAAACCATAAGTAACAGCCGCTTCTGTCTCTCGTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028110.11 |
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| CDS-3UTR GCA 90 bp | CTGTTACTTATGGTTTGTATTGGAATCCTTCGGGACCTGGGGAGGAAAGGCAAAGTAACACCAGCTTTCTaGAACAGGACTAGTAGACAT | + |
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Preference number: 4 (lower is better) Translates to: LLLMVCIGILRDLGRKGKVTPAF*NRTSRH Trigger: ATGTCTACTAGTCCTGTTGCAGAAAGCTGGTGTTAC...TTTGCCTTTCCTCCCCAGGTCCCGAAGGATTCCAATACAAACCATAAGTAACAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000132484.7 |
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| CDS-3UTR GCA 90 bp | GGAAAGGCAAATGCATTTCCTACTGTCCACACAAGACTCAAGACTGCTTTAACCGTAACACCAGCTTTCTaGAACAGGACTAGTAGACAT | + |
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Preference number: 4 (lower is better) Translates to: GKANAFPTVHTRLKTALTVTPAF*NRTSRH Trigger: ATGTCTACTAGTCCTGTTGCAGAAAGCTGGTGTTAC...GGTTAAAGCAGTCTTGAGTCTTGTGTGGACAGTAGGAAATGCATTTGCCTTTCC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000132827.8 |
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| CDS-3UTR GCA 90 bp | TGTCCACACAAGACTCAAGACTGCTTTAACCTTTTGCGTGGAATACCAAACTGTAAGCAGTGTTGGAGATaGTCACAGAATAACGTAAGC | + |
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Preference number: 4 (lower is better) Translates to: CPHKTQDCFNLLRGIPNCKQCWR*SQNNVS Trigger: GCTTACGTTATTCTGTGAGCATCTCCAACACTGCTT...ACAGTTTGGTATTCCACGCAAAAGGTTAAAGCAGTCTTGAGTCTTGTGTGGACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028110.11 ENSMUST00000132827.8 |
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| CDS-3UTR CCA 90 bp | GGCAAATGCATTTCCTACTGTCCACACAAGACTCAAGACTGCTTTAACCTTTTGTTCTGCAAGCAGTGTTaGAGATGCTCACAGAATAAC | + |
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Preference number: 4 (lower is better) Translates to: GKCISYCPHKTQDCFNLLFCKQC*RCSQNN Trigger: GTTATTCTGTGAGCATCTCCAACACTGCTTGCAGAA...CAAAAGGTTAAAGCAGTCTTGAGTCTTGTGTGGACAGTAGGAAATGCATTTGCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028110.11 ENSMUST00000132827.8 |
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| CDS-3UTR CAA 90 bp | CGGGACCTGGGGAGGAAAGGCAAATGCATTTCCTACTGTCCACACAAGACTCAAGGCCTGAAGAAAACGTaGAACTCTTTAACACTTCAC | + |
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Preference number: 5 (lower is better) Translates to: RDLGRKGKCISYCPHKTQGLKKT*NSLTLH Trigger: GTGAAGTGTTAAAGAGTTCAACGTTTTCTTCAGGCC...TTGAGTCTTGTGTGGACAGTAGGAAATGCATTTGCCTTTCCTCCCCAGGTCCCG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028110.11 |
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| CDS-3UTR CAA 90 bp | TTACTGCATTGTGGAGCTAGTGCAATCCTGCAGAGCCTTGGCAAACTGACAAGGTCAGTTGCTTGGTTGTaGTTCCAGTTTTTCCCATCC | + |
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Preference number: 5 (lower is better) Translates to: LLHCGASAILQSLGKLTRSVAWL*FQFFPS Trigger: GGATGGGAAAAACTGGAACAACAACCAAGCAACTGA...CCTTGTCAGTTTGCCAAGGCTCTGCAGGATTGCACTAGCTCCACAATGCAGTAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000132484.7 |
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| CDS-3UTR CAA 90 bp | CCAGCTTCTGTCCGTGGACGAGAGACAGAAGCGGCTGTTACTTATGGTTTGTATGGCCTGAAGAAAACGTaGAACTCTTTAACACTTCAC | + |
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Preference number: 5 (lower is better) Translates to: PASVRGRETEAAVTYGLYGLKKT*NSLTLH Trigger: GTGAAGTGTTAAAGAGTTCAACGTTTTCTTCAGGCC...ATACAAACCATAAGTAACAGCCGCTTCTGTCTCTCGTCCACGGACAGAAGCTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028110.11 ENSMUST00000132484.7 |
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| CDS-3UTR CAA 90 bp | CGGGACCTGGGGAGGAAAGGCAAATGCATTTCCTACTGTCCACACAAGACTCAAAAATCGATATGCTCTTaGGCTTTCCATTGCTTTTGT | + |
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Preference number: 5 (lower is better) Translates to: RDLGRKGKCISYCPHKTQKSICS*AFHCFC Trigger: ACAAAAGCAATGGAAAGCCAAAGAGCATATCGATTT...TTGAGTCTTGTGTGGACAGTAGGAAATGCATTTGCCTTTCCTCCCCAGGTCCCG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000028110.11 |
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| CDS GCA 90 bp | GTAGGAAAATTTCACTACTTTAACCTGTGTGTAACACCAGCTTTCTaGAACAGGACTAGTAGACATATCTCCAGGCAGAGGTGGAGTAGG | + |
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Preference number: 5 (lower is better) Translates to: VGKFHYFNLCVTPAF*NRTSRHISRQRWSR Trigger: CCTACTCCACCTCTGCCTGGAGATATGTCTACTAGTCCTGTTGCAGAAAGCTGGTGTTACACACAGGTTAAAGTAGTGAAATTTTCCTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000123843.3 ENSMUST00000132484.7 ENSMUST00000132827.8 |
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| CDS-3UTR CAA 90 bp | CCAGCTTCTGTCCGTGGACGAGAGACAGAAGCGGCTGTTACTTATGGTTTGTATAAATCGATATGCTCTTaGGCTTTCCATTGCTTTTGT | + |
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Preference number: 5 (lower is better) Translates to: PASVRGRETEAAVTYGLYKSICS*AFHCFC Trigger: ACAAAAGCAATGGAAAGCCAAAGAGCATATCGATTT...ATACAAACCATAAGTAACAGCCGCTTCTGTCTCTCGTCCACGGACAGAAGCTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028110.11 ENSMUST00000132484.7 |
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| CDS-3UTR CAA 90 bp | GACGAGAGACAGAAGCGGCTGTTACTTATGGTTTGTATTGGAATCCTTCGGGACTTGAGAAGAGAGAATTaGAATTTAGCTCGAACCTCA | + |
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Preference number: 5 (lower is better) Translates to: DERQKRLLLMVCIGILRDLRREN*NLARTS Trigger: TGAGGTTCGAGCTAAATTCAAATTCTCTCTTCTCAA...GTCCCGAAGGATTCCAATACAAACCATAAGTAACAGCCGCTTCTGTCTCTCGTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028110.11 ENSMUST00000132484.7 |
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| CDS-3UTR CAA 90 bp | CTGTTACTTATGGTTTGTATTGGAATCCTTCGGGACCTGGGGAGGAAAGGCAAATTTCCATTATGTCAGTaGCTTGGTTGTTGTTCCAGT | + |
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Preference number: 5 (lower is better) Translates to: LLLMVCIGILRDLGRKGKFPLCQ*LGCCSS Trigger: ACTGGAACAACAACCAAGCAACTGACATAATGGAAA...TTTGCCTTTCCTCCCCAGGTCCCGAAGGATTCCAATACAAACCATAAGTAACAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000132484.7 |
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| CDS-3UTR CAA 90 bp | TGTCCACACAAGACTCAAGACTGCTTTAACCTTTTGCGTGGAATACCAAACTGTGGCCTGAAGAAAACGTaGAACTCTTTAACACTTCAC | + |
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Preference number: 5 (lower is better) Translates to: CPHKTQDCFNLLRGIPNCGLKKT*NSLTLH Trigger: GTGAAGTGTTAAAGAGTTCAACGTTTTCTTCAGGCC...ACAGTTTGGTATTCCACGCAAAAGGTTAAAGCAGTCTTGAGTCTTGTGTGGACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028110.11 ENSMUST00000132827.8 |
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| CDS-3UTR CAA 90 bp | TGTCCACACAAGACTCAAGACTGCTTTAACCTTTTGCGTGGAATACCAAACTGTTTGAGAAGAGAGAATTaGAATTTAGCTCGAACCTCA | + |
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Preference number: 5 (lower is better) Translates to: CPHKTQDCFNLLRGIPNCLRREN*NLARTS Trigger: TGAGGTTCGAGCTAAATTCAAATTCTCTCTTCTCAA...ACAGTTTGGTATTCCACGCAAAAGGTTAAAGCAGTCTTGAGTCTTGTGTGGACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028110.11 ENSMUST00000132827.8 |
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| CDS-3UTR CAA 90 bp | GGCAAATGCATTTCCTACTGTCCACACAAGACTCAAGACTGCTTTAACCTTTTGAAATCGATATGCTCTTaGGCTTTCCATTGCTTTTGT | + |
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Preference number: 5 (lower is better) Translates to: GKCISYCPHKTQDCFNLLKSICS*AFHCFC Trigger: ACAAAAGCAATGGAAAGCCAAAGAGCATATCGATTT...CAAAAGGTTAAAGCAGTCTTGAGTCTTGTGTGGACAGTAGGAAATGCATTTGCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028110.11 ENSMUST00000132827.8 |
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| CDS CAA 72 bp | TCTTGGACCACACTCACCTCACAGAATAACGTAAGCTaGTCATCTGGAAGGAGACCATTAGCTTCATCAAGC | + |
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Preference number: 6 (lower is better) Translates to: SWTTLTSQNNVS*SSGRRPLASSS Trigger: GCTTGATGAAGCTAATGGTCTCCTTCCAGATGACAAGCTTACGTTATTCTGTGAGGTGAGTGTGGTCCAAGA 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000132484.7 |
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| CDS CAA 72 bp | AAGCAGTGTTGGAGATGCTCACAGAATAACGTAAGCTaGTCATCTGGAAGGAGACCATTAGCTTCATCAAGC | + |
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Preference number: 6 (lower is better) Translates to: KQCWRCSQNNVS*SSGRRPLASSS Trigger: GCTTGATGAAGCTAATGGTCTCCTTCCAGATGACAAGCTTACGTTATTCTGTGAGCATCTCCAACACTGCTT 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028110.11 ENSMUST00000132827.8 |
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