Pregenerated sensors for SPOPFM3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000090268Ensembl transcript IDs: ENSMUST00000159524.2
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 72 bp | CAGACAGGTTTCCCTGAAGAAACTCGGGTTTGTCTGTaGTTAGGGCCAGCACCTAAATTAAATCCCAGTTTC | + |
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Preference number: 3 (lower is better) Translates to: QTGFPEETRVCL*LGPAPKLNPSF Trigger: GAAACTGGGATTTAATTTAGGTGCTGGCCCTAAGCACAGACAAACCCGAGTTTCTTCAGGGAAACCTGTCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159524.2 |
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| CDS-3UTR TCA 90 bp | ACTGGTTATAGCTGTTGGAAGACAGATGTTGGTCATAGCTGTCCATCCCCTAAAACAGGCAGCAGTCTGTaGACAGGGAATTCTCCCACA | + |
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Preference number: 4 (lower is better) Translates to: TGYSCWKTDVGHSCPSPKTGSSL*TGNSPT Trigger: TGTGGGAGAATTCCCTGTTCACAGACTGCTGCCTGT...TTTAGGGGATGGACAGCTATGACCAACATCTGTCTTCCAACAGCTATAACCAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000159524.2 |
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| CDS-3UTR CCA 90 bp | CAGAAATCAGTGGTAACAACACTGGTTATAGCTGTTGGAAGACAGATGTTGGTCTCACAGGCCATAGAGTaGCTGTGGAGGTTTGGCAAC | + |
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Preference number: 4 (lower is better) Translates to: QKSVVTTLVIAVGRQMLVSQAIE*LWRFGN Trigger: GTTGCCAAACCTCCACAGCCACTCTATGGCCTGTGA...GACCAACATCTGTCTTCCAACAGCTATAACCAGTGTTGTTACCACTGATTTCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159524.2 |
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| CDS-3UTR TCA 90 bp | CAGAAATCAGTGGTAACAACACTGGTTATAGCTGTTGGAAGACAGATGTTGGTCAGCCCATCATCTCCTTaGAGACTTTGGGATCCAGGT | + |
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Preference number: 4 (lower is better) Translates to: QKSVVTTLVIAVGRQMLVSPSSP*RLWDPG Trigger: ACCTGGATCCCAAAGTCTTCAAGGAGATGATGGGCT...GACCAACATCTGTCTTCCAACAGCTATAACCAGTGTTGTTACCACTGATTTCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159524.2 |
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| CDS-3UTR CCA 90 bp | AATGTTCCACCAATACTGTACTCTAACCAGAAATCAGTGGTAACAACACTGGTTCAGCAGAGGGTAAGCTaGTCTTCAGCGAGGAGCCTT | + |
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Preference number: 4 (lower is better) Translates to: NVPPILYSNQKSVVTTLVQQRVS*SSARSL Trigger: AAGGCTCCTCGCTGAAGACCAGCTTACCCTCTGCTG...AACCAGTGTTGTTACCACTGATTTCTGGTTAGAGTACAGTATTGGTGGAACATT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159524.2 |
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| CDS-3UTR CCA 90 bp | AGTGGTAACAACACTGGTTATAGCTGTTGGAAGACAGATGTTGGTCATAGCTGTAGCTGCTGTATGTTGTaGAGGTCAGCCAGGATGAGA | + |
|
Preference number: 4 (lower is better) Translates to: SGNNTGYSCWKTDVGHSCSCCML*RSARMR Trigger: TCTCATCCTGGCTGACCTCCACAACATACAGCAGCT...ACAGCTATGACCAACATCTGTCTTCCAACAGCTATAACCAGTGTTGTTACCACT 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159524.2 |
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| CDS-3UTR CCA 90 bp | AGTGGTAACAACACTGGTTATAGCTGTTGGAAGACAGATGTTGGTCATAGCTGTGCAGGACCCAGAAAGTaGAATGTTTCAGCCACCAAG | + |
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Preference number: 4 (lower is better) Translates to: SGNNTGYSCWKTDVGHSCAGPRK*NVSATK Trigger: CTTGGTGGCTGAAACATTCCACTTTCTGGGTCCTGC...ACAGCTATGACCAACATCTGTCTTCCAACAGCTATAACCAGTGTTGTTACCACT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159524.2 |
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| CDS-3UTR TCA 90 bp | AATGTTCCACCAATACTGTACTCTAACCAGAAATCAGTGGTAACAACACTGGTTCAAACTGGGCTCTTTTaGCAGTGGAGTAACCCCAGG | + |
|
Preference number: 4 (lower is better) Translates to: NVPPILYSNQKSVVTTLVQTGLF*QWSNPR Trigger: CCTGGGGTTACTCCACTGTCAAAAGAGCCCAGTTTG...AACCAGTGTTGTTACCACTGATTTCTGGTTAGAGTACAGTATTGGTGGAACATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000159524.2 |
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| CDS-3UTR TCA 90 bp | CAGAAATCAGTGGTAACAACACTGGTTATAGCTGTTGGAAGACAGATGTTGGTCTACAGAGAGGTTCCTTaGGAGGGCATCCTCACATAT | + |
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Preference number: 4 (lower is better) Translates to: QKSVVTTLVIAVGRQMLVYREVP*EGILTY Trigger: ATATGTGAGGATGCCCTCTCAAGGAACCTCTCTGTA...GACCAACATCTGTCTTCCAACAGCTATAACCAGTGTTGTTACCACTGATTTCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159524.2 |
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| CDS-3UTR GCA 90 bp | AGTGGTAACAACACTGGTTATAGCTGTTGGAAGACAGATGTTGGTCATAGCTGTCTCCAAGAAACACTGTaGAGGACCCAGAAAGTGGAA | + |
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Preference number: 4 (lower is better) Translates to: SGNNTGYSCWKTDVGHSCLQETL*RTQKVE Trigger: TTCCACTTTCTGGGTCCTGCACAGTGTTTCTTGGAG...ACAGCTATGACCAACATCTGTCTTCCAACAGCTATAACCAGTGTTGTTACCACT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159524.2 |
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| CDS-3UTR TCA 90 bp | ACTATAAATGTTCCACCAATACTGTACTCTAACCAGAAATCAGTGGTAACAACAGCTAGGATGGCCTTGTaGGCCCTGAATTCTTGGCCA | + |
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Preference number: 4 (lower is better) Translates to: TINVPPILYSNQKSVVTTARMAL*ALNSWP Trigger: TGGCCAAGAATTCAGGGCTCACAAGGCCATCCTAGC...TGTTGTTACCACTGATTTCTGGTTAGAGTACAGTATTGGTGGAACATTTATAGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159524.2 |
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| CDS-3UTR TCA 90 bp | ACTATAAATGTTCCACCAATACTGTACTCTAACCAGAAATCAGTGGTAACAACAGGAGGTCAGCCAGGATaGGAGTGTGTGCAGCATTCT | + |
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Preference number: 4 (lower is better) Translates to: TINVPPILYSNQKSVVTTGGQPG*ECVQHS Trigger: AGAATGCTGCACACACTCTCATCCTGGCTGACCTCC...TGTTGTTACCACTGATTTCTGGTTAGAGTACAGTATTGGTGGAACATTTATAGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159524.2 |
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| CDS-3UTR TCA 90 bp | AGTGGTAACAACACTGGTTATAGCTGTTGGAAGACAGATGTTGGTCATAGCTGTTCCATCCATGCAAAATaGAAAGTGGCTAATGGTCCA | + |
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Preference number: 4 (lower is better) Translates to: SGNNTGYSCWKTDVGHSCSIHAK*KVANGP Trigger: TGGACCATTAGCCACTTTTCATTTTGCATGGATGGA...ACAGCTATGACCAACATCTGTCTTCCAACAGCTATAACCAGTGTTGTTACCACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159524.2 |
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| CDS-3UTR TCA 90 bp | ACTGGTTATAGCTGTTGGAAGACAGATGTTGGTCATAGCTGTCCATCCCCTAAAAAGCATAAAAGGCAATaGAATACAGGGCCTCATTCT | + |
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Preference number: 4 (lower is better) Translates to: TGYSCWKTDVGHSCPSPKKHKRQ*NTGPHS Trigger: AGAATGAGGCCCTGTATTTCATTGCCTTTTATGCTT...TTTAGGGGATGGACAGCTATGACCAACATCTGTCTTCCAACAGCTATAACCAGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000159524.2 |
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| CDS-3UTR CCA 90 bp | ACTGGTTATAGCTGTTGGAAGACAGATGTTGGTCATAGCTGTCCATCCCCTAAAATGCAAAATGAAAAGTaGCTAATGGTCCACTTGTGG | + |
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Preference number: 4 (lower is better) Translates to: TGYSCWKTDVGHSCPSPKMQNEK*LMVHLW Trigger: CCACAAGTGGACCATTAGCCACTTTTCATTTTGCAT...TTTAGGGGATGGACAGCTATGACCAACATCTGTCTTCCAACAGCTATAACCAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000159524.2 |
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| CDS-3UTR CCA 90 bp | GTTTGTCTGTGCTTAGGGCCAGCACCTAAATTAAATCCCAGTTTCCTAAATATCGGAGCCTTTGTGGATTaGAGAAGAGGAAATCTCGTA | + |
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Preference number: 4 (lower is better) Translates to: VCLCLGPAPKLNPSFLNIGAFVD*RRGNLV Trigger: TACGAGATTTCCTCTTCTCCAATCCACAAAGGCTCC...GATATTTAGGAAACTGGGATTTAATTTAGGTGCTGGCCCTAAGCACAGACAAAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159524.2 |
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| CDS-3UTR CCA 90 bp | CAGAAATCAGTGGTAACAACACTGGTTATAGCTGTTGGAAGACAGATGTTGGTCTGCCATCATGTGTTTTaGATCCTTGATTGCAGGTGT | + |
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Preference number: 4 (lower is better) Translates to: QKSVVTTLVIAVGRQMLVCHHVF*ILDCRC Trigger: ACACCTGCAATCAAGGATCCAAAACACATGATGGCA...GACCAACATCTGTCTTCCAACAGCTATAACCAGTGTTGTTACCACTGATTTCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159524.2 |
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| CDS-3UTR CCA 90 bp | AATGTTCCACCAATACTGTACTCTAACCAGAAATCAGTGGTAACAACACTGGTTGTGGCTGTGGAGGTTTaGCAACTTCCCAGTGTAAAT | + |
|
Preference number: 4 (lower is better) Translates to: NVPPILYSNQKSVVTTLVVAVEV*QLPSVN Trigger: ATTTACACTGGGAAGTTGCCAAACCTCCACAGCCAC...AACCAGTGTTGTTACCACTGATTTCTGGTTAGAGTACAGTATTGGTGGAACATT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159524.2 |
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| CDS-3UTR GCA 90 bp | ACTATAAATGTTCCACCAATACTGTACTCTAACCAGAAATCAGTGGTAACAACACAGGATGAGAGTGTGTaGAGCATTCTCTACAGAGAG | + |
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Preference number: 4 (lower is better) Translates to: TINVPPILYSNQKSVVTTQDESV*SILYRE Trigger: CTCTCTGTAGAGAATGCTGCACACACTCTCATCCTG...TGTTGTTACCACTGATTTCTGGTTAGAGTACAGTATTGGTGGAACATTTATAGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159524.2 |
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| CDS-3UTR GCA 90 bp | AATGTTCCACCAATACTGTACTCTAACCAGAAATCAGTGGTAACAACACTGGTTCTGACAGGTAATTTCTaGTTTCTTCATCACTTCCGT | + |
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Preference number: 4 (lower is better) Translates to: NVPPILYSNQKSVVTTLVLTGNF*FLHHFR Trigger: ACGGAAGTGATGAAGAAAGCAGAAATTACCTGTCAG...AACCAGTGTTGTTACCACTGATTTCTGGTTAGAGTACAGTATTGGTGGAACATT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159524.2 |
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| CDS-3UTR CCA 90 bp | ACTATAAATGTTCCACCAATACTGTACTCTAACCAGAAATCAGTGGTAACAACATTCATCACTTCCGTTTaGGTGTACCCTCAAACACCA | + |
|
Preference number: 4 (lower is better) Translates to: TINVPPILYSNQKSVVTTFITSV*VYPQTP Trigger: TGGTGTTTGAGGGTACACCCAAACGGAAGTGATGAA...TGTTGTTACCACTGATTTCTGGTTAGAGTACAGTATTGGTGGAACATTTATAGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159524.2 |
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| CDS-3UTR TCA 90 bp | ACTATAAATGTTCCACCAATACTGTACTCTAACCAGAAATCAGTGGTAACAACAAGTCTCTTCTCCAATTaGTGTTCAAACATGGCTCTG | + |
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Preference number: 4 (lower is better) Translates to: TINVPPILYSNQKSVVTTSLFSN*CSNMAL Trigger: CAGAGCCATGTTTGAACATCAATTGGAGAAGAGACT...TGTTGTTACCACTGATTTCTGGTTAGAGTACAGTATTGGTGGAACATTTATAGT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159524.2 |
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| CDS CCA 90 bp | AGCAGCTGCCAGCAGATCACAGGCCATAGAGTGGCTGTGGAGGTTTaGCAACTTCCCAGTGTAAATGAAGCCCATCATCTCCTTGAAGAC | + |
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Preference number: 5 (lower is better) Translates to: SSCQQITGHRVAVEV*QLPSVNEAHHLLED Trigger: GTCTTCAAGGAGATGATGGGCTTCATTTACACTGGGAAGTTGCCAAACCTCCACAGCCACTCTATGGCCTGTGATCTGCTGGCAGCTGCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159524.2 |
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| CDS CCA 90 bp | TGTTTGAGTGAGGGCTCCAAGAAACACTGTGCAGGACCCAGAAAGTaGAATGTTTCAGCCACCAAGTGGGGATGGGACTCCATCATTGAC | + |
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Preference number: 5 (lower is better) Translates to: CLSEGSKKHCAGPRK*NVSATKWGWDSIID Trigger: GTCAATGATGGAGTCCCATCCCCACTTGGTGGCTGAAACATTCCACTTTCTGGGTCCTGCACAGTGTTTCTTGGAGCCCTCACTCAAACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159524.2 |
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| CDS CCA 90 bp | TTAAACAAGGCTCCCACTATGCTCACCTTGCAGCAGAGGGTAAGCTaGTCTTCAGCGAGGAGCCTTTGTGGATTGGAGAAGAGGAAATCT | + |
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Preference number: 5 (lower is better) Translates to: LNKAPTMLTLQQRVS*SSARSLCGLEKRKS Trigger: AGATTTCCTCTTCTCCAATCCACAAAGGCTCCTCGCTGAAGACCAGCTTACCCTCTGCTGCAAGGTGAGCATAGTGGGAGCCTTGTTTAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159524.2 |
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| CDS-3UTR CAA 90 bp | CAGAAATCAGTGGTAACAACACTGGTTATAGCTGTTGGAAGACAGATGTTGGTCCCCACTATGCTCACCTaGCAGCAGAGGGTAAGCTGG | + |
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Preference number: 5 (lower is better) Translates to: QKSVVTTLVIAVGRQMLVPTMLT*QQRVSW Trigger: CCAGCTTACCCTCTGCTGCAAGGTGAGCATAGTGGG...GACCAACATCTGTCTTCCAACAGCTATAACCAGTGTTGTTACCACTGATTTCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159524.2 |
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| CDS-3UTR CAA 90 bp | ACTGGTTATAGCTGTTGGAAGACAGATGTTGGTCATAGCTGTCCATCCCCTAAATTCAGCTGCTGTATGTaGTGGAGGTCAGCCAGGATG | + |
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Preference number: 5 (lower is better) Translates to: TGYSCWKTDVGHSCPSPKFSCCM*WRSARM Trigger: CATCCTGGCTGACCTCCACAACATACAGCAGCTGAA...TTTAGGGGATGGACAGCTATGACCAACATCTGTCTTCCAACAGCTATAACCAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159524.2 |
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| CDS TCA 90 bp | ACTTCCACTCTGAGGTCTCAGAGACCACAGAAGCATAAAAGGCAATaGAATACAGGGCCTCATTCTTCAGCTGCTGTATGTTGTGGAGGT | + |
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Preference number: 5 (lower is better) Translates to: TSTLRSQRPQKHKRQ*NTGPHSSAAVCCGG Trigger: ACCTCCACAACATACAGCAGCTGAAGAATGAGGCCCTGTATTTCATTGCCTTTTATGCTTCTGTGGTCTCTGAGACCTCAGAGTGGAAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159524.2 |
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| CDS-3UTR CAA 90 bp | ACTGGTTATAGCTGTTGGAAGACAGATGTTGGTCATAGCTGTCCATCCCCTAAAAAGCCCATCATCTCCTaGAAGACTTTGGGATCCAGG | + |
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Preference number: 5 (lower is better) Translates to: TGYSCWKTDVGHSCPSPKKPIIS*KTLGSR Trigger: CCTGGATCCCAAAGTCTTCAAGGAGATGATGGGCTT...TTTAGGGGATGGACAGCTATGACCAACATCTGTCTTCCAACAGCTATAACCAGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000159524.2 |
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| CDS-3UTR CAA 90 bp | ACTGGTTATAGCTGTTGGAAGACAGATGTTGGTCATAGCTGTCCATCCCCTAAACTACAGAGAGGTTCCTaGAGAGGGCATCCTCACATA | + |
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Preference number: 5 (lower is better) Translates to: TGYSCWKTDVGHSCPSPKLQRGS*RGHPHI Trigger: TATGTGAGGATGCCCTCTCAAGGAACCTCTCTGTAG...TTTAGGGGATGGACAGCTATGACCAACATCTGTCTTCCAACAGCTATAACCAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159524.2 |
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| CDS-3UTR CAA 90 bp | CAGAAATCAGTGGTAACAACACTGGTTATAGCTGTTGGAAGACAGATGTTGGTCAGTGGCTGTGGAGGTTaGGCAACTTCCCAGTGTAAA | + |
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Preference number: 5 (lower is better) Translates to: QKSVVTTLVIAVGRQMLVSGCGG*ATSQCK Trigger: TTTACACTGGGAAGTTGCCAAACCTCCACAGCCACT...GACCAACATCTGTCTTCCAACAGCTATAACCAGTGTTGTTACCACTGATTTCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159524.2 |
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| CDS-3UTR CAA 90 bp | GTTTGTCTGTGCTTAGGGCCAGCACCTAAATTAAATCCCAGTTTCCTAAATATCTTCAGCGAGGAGCCTTaGTGGATTGGAGAAGAGGAA | + |
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Preference number: 5 (lower is better) Translates to: VCLCLGPAPKLNPSFLNIFSEEP*WIGEEE Trigger: TTCCTCTTCTCCAATCCACAAAGGCTCCTCGCTGAA...GATATTTAGGAAACTGGGATTTAATTTAGGTGCTGGCCCTAAGCACAGACAAAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159524.2 |
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| CDS GCA 90 bp | TCTTTTGACAGTGGAGTAACCCCAGGTAAACTGACAGGTAATTTCTaGTTTCTTCATCACTTCCGTTTGGGTGTACCCTCAAACACCATT | + |
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Preference number: 5 (lower is better) Translates to: SFDSGVTPGKLTGNF*FLHHFRLGVPSNTI Trigger: AATGGTGTTTGAGGGTACACCCAAACGGAAGTGATGAAGAAAGCAGAAATTACCTGTCAGTTTACCTGGGGTTACTCCACTGTCAAAAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000159524.2 |
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| CDS-3UTR CAA 90 bp | AATGTTCCACCAATACTGTACTCTAACCAGAAATCAGTGGTAACAACACTGGTTAAACACCATTCCACTTaGTCACTGGCCTCCAGTGAG | + |
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Preference number: 5 (lower is better) Translates to: NVPPILYSNQKSVVTTLVKHHST*SLASSE Trigger: CTCACTGGAGGCCAGTGACAAAGTGGAATGGTGTTT...AACCAGTGTTGTTACCACTGATTTCTGGTTAGAGTACAGTATTGGTGGAACATT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159524.2 |
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| CDS-3UTR CAA 90 bp | GTTTGTCTGTGCTTAGGGCCAGCACCTAAATTAAATCCCAGTTTCCTAAATATCATCTCCTTGAAGACTTaGGGATCCAGGTCATTGATA | + |
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Preference number: 5 (lower is better) Translates to: VCLCLGPAPKLNPSFLNIISLKT*GSRSLI Trigger: TATCAATGACCTGGATCCCAAAGTCTTCAAGGAGAT...GATATTTAGGAAACTGGGATTTAATTTAGGTGCTGGCCCTAAGCACAGACAAAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159524.2 |
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| CDS-3UTR CAA 90 bp | AATGTTCCACCAATACTGTACTCTAACCAGAAATCAGTGGTAACAACACTGGTTTCCAAAATTCATACTTaGCCCAAACTGGGCTCTTTT | + |
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Preference number: 5 (lower is better) Translates to: NVPPILYSNQKSVVTTLVSKIHT*PKLGSF Trigger: AAAAGAGCCCAGTTTGGGCAAAGTATGAATTTTGGA...AACCAGTGTTGTTACCACTGATTTCTGGTTAGAGTACAGTATTGGTGGAACATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159524.2 |
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| CDS GCA 72 bp | GACCTTCAAGCCCTCCAGGCCATACCTGTCAGCAGCTaGCAGCAGATCACAGGCCATAGAGTGGCTGTGGAG | + |
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Preference number: 6 (lower is better) Translates to: DLQALQAIPVSS*QQITGHRVAVE Trigger: CTCCACAGCCACTCTATGGCCTGTGATCTGCTGGCAGCTGCTGACAGGTATGGCCTGGAGGGCTTGAAGGTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159524.2 |
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| CDS CAA 72 bp | CCGGGTGTGTTAAACAAGGCTCCCACTATGCTCACCTaGCAGCAGAGGGTAAGCTGGTCTTCAGCGAGGAGC | + |
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Preference number: 6 (lower is better) Translates to: PGVLNKAPTMLT*QQRVSWSSARS Trigger: GCTCCTCGCTGAAGACCAGCTTACCCTCTGCTGCAAGGTGAGCATAGTGGGAGCCTTGTTTAACACACCCGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159524.2 |
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| CDS CCA 72 bp | GCTCCCACTATGCTCACCTTGCAGCAGAGGGTAAGCTaGTCTTCAGCGAGGAGCCTTTGTGGATTGGAGAAG | + |
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Preference number: 6 (lower is better) Translates to: APTMLTLQQRVS*SSARSLCGLEK Trigger: CTTCTCCAATCCACAAAGGCTCCTCGCTGAAGACCAGCTTACCCTCTGCTGCAAGGTGAGCATAGTGGGAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159524.2 |
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| CDS CCA 72 bp | GAGGGCTCCAAGAAACACTGTGCAGGACCCAGAAAGTaGAATGTTTCAGCCACCAAGTGGGGATGGGACTCC | + |
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Preference number: 6 (lower is better) Translates to: EGSKKHCAGPRK*NVSATKWGWDS Trigger: GGAGTCCCATCCCCACTTGGTGGCTGAAACATTCCACTTTCTGGGTCCTGCACAGTGTTTCTTGGAGCCCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159524.2 |
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| CDS CAA 90 bp | ATGTTCTCTCCGGGTGTGTTAAACAAGGCTCCCACTATGCTCACCTaGCAGCAGAGGGTAAGCTGGTCTTCAGCGAGGAGCCTTTGTGGA | + |
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Preference number: 6 (lower is better) Translates to: MFSPGVLNKAPTMLT*QQRVSWSSARSLCG Trigger: TCCACAAAGGCTCCTCGCTGAAGACCAGCTTACCCTCTGCTGCAAGGTGAGCATAGTGGGAGCCTTGTTTAACACACCCGGAGAGAACAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159524.2 |
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| CDS TCA 72 bp | GAGAGTGTGTGCAGCATTCTCTACAGAGAGGTTCCTTaGGAGGGCATCCTCACATATGACCTTCAAGCCCTC | + |
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Preference number: 6 (lower is better) Translates to: ESVCSILYREVP*EGILTYDLQAL Trigger: GAGGGCTTGAAGGTCATATGTGAGGATGCCCTCTCAAGGAACCTCTCTGTAGAGAATGCTGCACACACTCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159524.2 |
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| CDS TCA 72 bp | TCTTCAGCTGCTGTATGTTGTGGAGGTCAGCCAGGATaGGAGTGTGTGCAGCATTCTCTACAGAGAGGTTCC | + |
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Preference number: 6 (lower is better) Translates to: SSAAVCCGGQPG*ECVQHSLQRGS Trigger: GGAACCTCTCTGTAGAGAATGCTGCACACACTCTCATCCTGGCTGACCTCCACAACATACAGCAGCTGAAGA 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159524.2 |
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| CDS CAA 72 bp | ATGTTTCAGCCACCAAGTGGGGATGGGACTCCATCATaGACTTCCACTCTGAGGTCTCAGAGACCACAGAAG | + |
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Preference number: 6 (lower is better) Translates to: MFQPPSGDGTPS*TSTLRSQRPQK Trigger: CTTCTGTGGTCTCTGAGACCTCAGAGTGGAAGTCAATGATGGAGTCCCATCCCCACTTGGTGGCTGAAACAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159524.2 |
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| CDS CAA 90 bp | TTGCAGCAGAGGGTAAGCTGGTCTTCAGCGAGGAGCCTTTGTGGATaGGAGAAGAGGAAATCTCGTAGGATAAACCTTTTGAATCCCCTG | + |
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Preference number: 6 (lower is better) Translates to: LQQRVSWSSARSLCG*EKRKSRRINLLNPL Trigger: CAGGGGATTCAAAAGGTTTATCCTACGAGATTTCCTCTTCTCCAATCCACAAAGGCTCCTCGCTGAAGACCAGCTTACCCTCTGCTGCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000159524.2 |
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| CDS CAA 90 bp | GAAAGTGGAATGTTTCAGCCACCAAGTGGGGATGGGACTCCATCATaGACTTCCACTCTGAGGTCTCAGAGACCACAGAAGCATAAAAGG | + |
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Preference number: 6 (lower is better) Translates to: ESGMFQPPSGDGTPS*TSTLRSQRPQKHKR Trigger: CCTTTTATGCTTCTGTGGTCTCTGAGACCTCAGAGTGGAAGTCAATGATGGAGTCCCATCCCCACTTGGTGGCTGAAACATTCCACTTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000159524.2 |
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| CDS CAA 90 bp | CCAGGTAAACTGACAGGTAATTTCTGCTTTCTTCATCACTTCCGTTaGGGTGTACCCTCAAACACCATTCCACTTTGTCACTGGCCTCCA | + |
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Preference number: 6 (lower is better) Translates to: PGKLTGNFCFLHHFR*GVPSNTIPLCHWPP Trigger: TGGAGGCCAGTGACAAAGTGGAATGGTGTTTGAGGGTACACCCAAACGGAAGTGATGAAGAAAGCAGAAATTACCTGTCAGTTTACCTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159524.2 |
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| CDS CAA 72 bp | CTTCCGTTTGGGTGTACCCTCAAACACCATTCCACTTaGTCACTGGCCTCCAGTGAGAATTTTGCGCTTATA | + |
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Preference number: 6 (lower is better) Translates to: LPFGCTLKHHST*SLASSENFALI Trigger: TATAAGCGCAAAATTCTCACTGGAGGCCAGTGACAAAGTGGAATGGTGTTTGAGGGTACACCCAAACGGAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159524.2 |
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| CDS CAA 90 bp | TCTTCATCACTTCCGTTTGGGTGTACCCTCAAACACCATTCCACTTaGTCACTGGCCTCCAGTGAGAATTTTGCGCTTATAATCTTTTCC | + |
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Preference number: 6 (lower is better) Translates to: SSSLPFGCTLKHHST*SLASSENFALIIFS Trigger: GGAAAAGATTATAAGCGCAAAATTCTCACTGGAGGCCAGTGACAAAGTGGAATGGTGTTTGAGGGTACACCCAAACGGAAGTGATGAAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000159524.2 |
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| CDS CCA 72 bp | TCCATGCAAAATGAAAAGTGGCTAATGGTCCACTTGTaGCAGAAGCTGTCAACTCTGATATGTGTGTATCCC | + |
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Preference number: 6 (lower is better) Translates to: SMQNEKWLMVHL*QKLSTLICVYP Trigger: GGGATACACACATATCAGAGTTGACAGCTTCTGCCACAAGTGGACCATTAGCCACTTTTCATTTTGCATGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000159524.2 |
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| CDS CAA 72 bp | CCATCCATGCAAAATGAAAAGTGGCTAATGGTCCACTaGTGGCAGAAGCTGTCAACTCTGATATGTGTGTAT | + |
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Preference number: 6 (lower is better) Translates to: PSMQNEKWLMVH*WQKLSTLICVY Trigger: ATACACACATATCAGAGTTGACAGCTTCTGCCACAAGTGGACCATTAGCCACTTTTCATTTTGCATGGATGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000159524.2 |
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| CDS CAA 72 bp | CCCATCATCTCCTTGAAGACTTTGGGATCCAGGTCATaGATATCAACACGGTTTGTTAGTCTCTTCTCCAAT | + |
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Preference number: 6 (lower is better) Translates to: PIISLKTLGSRS*ISTRFVSLFSN Trigger: ATTGGAGAAGAGACTAACAAACCGTGTTGATATCAATGACCTGGATCCCAAAGTCTTCAAGGAGATGATGGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159524.2 |
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| CDS CAA 72 bp | GACATTAATGCTGGACCTACTTTGATAATTCTTTCCTaGGGAATTTATGATCCAAAATTCATACTTTGCCCA | + |
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Preference number: 6 (lower is better) Translates to: DINAGPTLIILS*GIYDPKFILCP Trigger: TGGGCAAAGTATGAATTTTGGATCATAAATTCCCAAGGAAAGAATTATCAAAGTAGGTCCAGCATTAATGTC 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159524.2 |
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