Pregenerated sensors for SPOPFM1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000089696

Ensembl transcript IDs: ENSMUST00000098878.4, ENSMUST00000159517.2

Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	CTCACACATGACCTTCAAGCCCTCAAGGCCATACCTGTCAGCAGCTaGCAGCAGATCACAGGCCATGGAGTGGATGTGGAGGTGTGGTGC	+
Preference number: 5 (lower is better) Translates to: LTHDLQALKAIPVSS*QQITGHGVDVEVWC Trigger: GCACCACACCTCCACATCCACTCCATGGCCTGTGATCTGCTGGCAGCTGCTGACAGGTATGGCCTTGAGGGCTTGAAGGTCATGTGTGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098878.4 ENSMUST00000159517.2
CDS TCA 90 bp	CAGCATTCTCCACAGAGAGGTTCCTGCAGAGGGCATCCTCACACATaGCCTTCAAGCCCTCAAGGCCATACCTGTCAGCAGCTGCCAGCA	+
Preference number: 5 (lower is better) Translates to: QHSPQRGSCRGHPHT*PSSPQGHTCQQLPA Trigger: TGCTGGCAGCTGCTGACAGGTATGGCCTTGAGGGCTTGAAGGTCATGTGTGAGGATGCCCTCTGCAGGAACCTCTCTGTGGAGAATGCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098878.4 ENSMUST00000159517.2
CDS TCA 90 bp	GGGCCTGAGTCTTCAGCTGCTCTATGTTGTGGAGGTCAGCTAAGATaGGAGTGTGTGCAGCATTCTCCACAGAGAGGTTCCTGCAGAGGG	+
Preference number: 5 (lower is better) Translates to: GPESSAALCCGGQLR*ECVQHSPQRGSCRG Trigger: CCCTCTGCAGGAACCTCTCTGTGGAGAATGCTGCACACACTCTCATCTTAGCTGACCTCCACAACATAGAGCAGCTGAAGACTCAGGCCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098878.4 ENSMUST00000159517.2
CDS TCA 90 bp	TGGGTGTACCTTCAAACCCCATTCCACTTTGTCACTGGCCTTCAATaGGAATTTTGGGCTTGTAATCGTTTCCATAATTCCATCCATGCA	+
Preference number: 5 (lower is better) Translates to: WVYLQTPFHFVTGLQ*EFWACNRFHNSIHA Trigger: TGCATGGATGGAATTATGGAAACGATTACAAGCCCAAAATTCTCATTGAAGGCCAGTGACAAAGTGGAATGGGGTTTGAAGGTACACCCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098878.4 ENSMUST00000159517.2
CDS TCA 90 bp	GAATTTTGGGCTTGTAATCGTTTCCATAATTCCATCCATGCAAAATaGAAAGTTGCTAATGGTCCACTTGTGGCAGAAGCTGTCAACGCT	+
Preference number: 5 (lower is better) Translates to: EFWACNRFHNSIHAK*KVANGPLVAEAVNA Trigger: AGCGTTGACAGCTTCTGCCACAAGTGGACCATTAGCAACTTTTCATTTTGCATGGATGGAATTATGGAAACGATTACAAGCCCAAAATTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098878.4 ENSMUST00000159517.2
CDS GCA 72 bp	GACCTTCAAGCCCTCAAGGCCATACCTGTCAGCAGCTaGCAGCAGATCACAGGCCATGGAGTGGATGTGGAG	+
Preference number: 6 (lower is better) Translates to: DLQALKAIPVSS*QQITGHGVDVE Trigger: CTCCACATCCACTCCATGGCCTGTGATCTGCTGGCAGCTGCTGACAGGTATGGCCTTGAGGGCTTGAAGGTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098878.4 ENSMUST00000159517.2
CDS TCA 72 bp	CCACAGAGAGGTTCCTGCAGAGGGCATCCTCACACATaGCCTTCAAGCCCTCAAGGCCATACCTGTCAGCAG	+
Preference number: 6 (lower is better) Translates to: PQRGSCRGHPHT*PSSPQGHTCQQ Trigger: CTGCTGACAGGTATGGCCTTGAGGGCTTGAAGGTCATGTGTGAGGATGCCCTCTGCAGGAACCTCTCTGTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098878.4 ENSMUST00000159517.2
CDS CAA 72 bp	CCCACAGCTCCCCTAGGTCATCTGCCATCATGTGTCTaGGATCCGGGACTGCAGGTGTTATGCTCTGTCCAG	+
Preference number: 6 (lower is better) Translates to: PTAPLGHLPSCV*DPGLQVLCSVQ Trigger: CTGGACAGAGCATAACACCTGCAGTCCCGGATCCAAGACACATGATGGCAGATGACCTAGGGGAGCTGTGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098878.4 ENSMUST00000159517.2
CDS TCA 72 bp	CTGGAGAACGAGCTGCTAGGATGGCCTTGTGAGCCCTaGATTCTTTGCCAGCTACCAACAGGCAGCAGTCTG	+
Preference number: 6 (lower is better) Translates to: LENELLGWPCEP*ILCQLPTGSSL Trigger: CAGACTGCTGCCTGTTGGTAGCTGGCAAAGAATTCAGGGCTCACAAGGCCATCCTAGCAGCTCGTTCTCCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098878.4 ENSMUST00000159517.2
CDS TCA 72 bp	CTGAAAACTGGAGAACGAGCTGCTAGGATGGCCTTGTaGGCCCTGAATTCTTTGCCAGCTACCAACAGGCAG	+
Preference number: 6 (lower is better) Translates to: LKTGERAARMAL*ALNSLPATNRQ Trigger: CTGCCTGTTGGTAGCTGGCAAAGAATTCAGGGCTCACAAGGCCATCCTAGCAGCTCGTTCTCCAGTTTTCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098878.4 ENSMUST00000159517.2
CDS CAA 90 bp	GGGAGTGGAATGTTTCAGCCACCAAGTGGGGATGGGACTCCATCATaGACTTCCACTCTGAGTTCTCAGAGACCTCAGAAGCATGAAGTG	+
Preference number: 6 (lower is better) Translates to: GSGMFQPPSGDGTPS*TSTLSSQRPQKHEV Trigger: CACTTCATGCTTCTGAGGTCTCTGAGAACTCAGAGTGGAAGTCAATGATGGAGTCCCATCCCCACTTGGTGGCTGAAACATTCCACTCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098878.4 ENSMUST00000159517.2
CDS CAA 72 bp	ATGTTTCAGCCACCAAGTGGGGATGGGACTCCATCATaGACTTCCACTCTGAGTTCTCAGAGACCTCAGAAG	+
Preference number: 6 (lower is better) Translates to: MFQPPSGDGTPS*TSTLSSQRPQK Trigger: CTTCTGAGGTCTCTGAGAACTCAGAGTGGAAGTCAATGATGGAGTCCCATCCCCACTTGGTGGCTGAAACAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098878.4 ENSMUST00000159517.2
CDS CAA 72 bp	AGGGTAAGCTGGTCTTCAGGGAGGAGCCTATGTGGATaGGAGAAGAGGAAATCTCGTAGGATAAACTTTTTG	+
Preference number: 6 (lower is better) Translates to: RVSWSSGRSLCG*EKRKSRRINFL Trigger: CAAAAAGTTTATCCTACGAGATTTCCTCTTCTCCAATCCACATAGGCTCCTCCCTGAAGACCAGCTTACCCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000098878.4 ENSMUST00000159517.2
CDS CAA 72 bp	CCCATCATCTCCTTGAAGACTTTGGGATCCAGGCCATaGATATCAACACGGTTTGTTAGTCTCTCCTCCATT	+
Preference number: 6 (lower is better) Translates to: PIISLKTLGSRP*ISTRFVSLSSI Trigger: AATGGAGGAGAGACTAACAAACCGTGTTGATATCAATGGCCTGGATCCCAAAGTCTTCAAGGAGATGATGGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098878.4 ENSMUST00000159517.2
CDS CCA 72 bp	TCCATGCAAAATGAAAAGTTGCTAATGGTCCACTTGTaGCAGAAGCTGTCAACGCTGATATGTGTGTATCCC	+
Preference number: 6 (lower is better) Translates to: SMQNEKLLMVHL*QKLSTLICVYP Trigger: GGGATACACACATATCAGCGTTGACAGCTTCTGCCACAAGTGGACCATTAGCAACTTTTCATTTTGCATGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098878.4 ENSMUST00000159517.2
CDS CAA 72 bp	CCATCCATGCAAAATGAAAAGTTGCTAATGGTCCACTaGTGGCAGAAGCTGTCAACGCTGATATGTGTGTAT	+
Preference number: 6 (lower is better) Translates to: PSMQNEKLLMVH*WQKLSTLICVY Trigger: ATACACACATATCAGCGTTGACAGCTTCTGCCACAAGTGGACCATTAGCAACTTTTCATTTTGCATGGATGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098878.4 ENSMUST00000159517.2
CDS CAA 72 bp	ATTCCATTTGGGTGTACCTTCAAACCCCATTCCACTTaGTCACTGGCCTTCAATGAGAATTTTGGGCTTGTA	+
Preference number: 6 (lower is better) Translates to: IPFGCTFKPHST*SLAFNENFGLV Trigger: TACAAGCCCAAAATTCTCATTGAAGGCCAGTGACAAAGTGGAATGGGGTTTGAAGGTACACCCAAATGGAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098878.4 ENSMUST00000159517.2
CDS CAA 90 bp	GGGCTTGTAATCGTTTCCATAATTCCATCCATGCAAAATGAAAAGTaGCTAATGGTCCACTTGTGGCAGAAGCTGTCAACGCTGATATGT	+
Preference number: 6 (lower is better) Translates to: GLVIVSIIPSMQNEK*LMVHLWQKLSTLIC Trigger: ACATATCAGCGTTGACAGCTTCTGCCACAAGTGGACCATTAGCAACTTTTCATTTTGCATGGATGGAATTATGGAAACGATTACAAGCCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098878.4 ENSMUST00000159517.2
CDS CAA 90 bp	TCTTCATCAATTCCATTTGGGTGTACCTTCAAACCCCATTCCACTTaGTCACTGGCCTTCAATGAGAATTTTGGGCTTGTAATCGTTTCC	+
Preference number: 6 (lower is better) Translates to: SSSIPFGCTFKPHST*SLAFNENFGLVIVS Trigger: GGAAACGATTACAAGCCCAAAATTCTCATTGAAGGCCAGTGACAAAGTGGAATGGGGTTTGAAGGTACACCCAAATGGAATTGATGAAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098878.4 ENSMUST00000159517.2
CDS TCA 72 bp	CTTCAAACCCCATTCCACTTTGTCACTGGCCTTCAATaGGAATTTTGGGCTTGTAATCGTTTCCATAATTCC	+
Preference number: 6 (lower is better) Translates to: LQTPFHFVTGLQ*EFWACNRFHNS Trigger: GGAATTATGGAAACGATTACAAGCCCAAAATTCTCATTGAAGGCCAGTGACAAAGTGGAATGGGGTTTGAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098878.4 ENSMUST00000159517.2
CDS CAA 72 bp	ATCGTTTCCATAATTCCATCCATGCAAAATGAAAAGTaGCTAATGGTCCACTTGTGGCAGAAGCTGTCAACG	+
Preference number: 6 (lower is better) Translates to: IVSIIPSMQNEK*LMVHLWQKLST Trigger: CGTTGACAGCTTCTGCCACAAGTGGACCATTAGCAACTTTTCATTTTGCATGGATGGAATTATGGAAACGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098878.4 ENSMUST00000159517.2
CDS GCA 72 bp	AGTGGAGTAACGCCAGGTAAACTGACAGGTAATTTTTaGTTTCTTCATCAATTCCATTTGGGTGTACCTTCA	+
Preference number: 6 (lower is better) Translates to: SGVTPGKLTGNF*FLHQFHLGVPS Trigger: TGAAGGTACACCCAAATGGAATTGATGAAGAAAGCAAAAATTACCTGTCAGTTTACCTGGCGTTACTCCACT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000098878.4 ENSMUST00000159517.2
CDS CAA 72 bp	TTTGTGAAAGCTAACGACTTTCGTGCTCTTCCTACTTaGATATTTTTCTCCTTGGGAATTTATGATCCAAAA	+
Preference number: 6 (lower is better) Translates to: FVKANDFRALPT*IFFSLGIYDPK Trigger: TTTTGGATCATAAATTCCCAAGGAGAAAAATATCAAAGTAGGAAGAGCACGAAAGTCGTTAGCTTTCACAAA 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000098878.4 ENSMUST00000159517.2

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