Pregenerated sensors for SPO11 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000005883Ensembl transcript IDs: ENSMUST00000050442.15, ENSMUST00000109125.8, ENSMUST00000109126.5
Found 111 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | TTCCTTCGCAACCTCTCAAGGTTCGCTTGCTGTTTTTCTTTGTTGCTAGTGAGAGGCCAACAGAAAGCCTaGTGGTCCACGTTCCCTGCT | + |
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Preference number: 2 (lower is better) Translates to: FLRNLSRFACCFSLLLVRGQQKA*WSTFPA Trigger: AGCAGGGAACGTGGACCACCAGGCTTTCTGTTGGCC...TCTCACTAGCAACAAAGAAAAACAGCAAGCGAACCTTGAGAGGTTGCGAAGGAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
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| 3UTR-3UTR CCA 90 bp | TTCCTTCGCAACCTCTCAAGGTTCGCTTGCTGTTTTTCTTTGTTGCTAGTGAGACAACAGAAAGCCTGGTaGTCCACGTTCCCTGCTGTG | + |
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Preference number: 2 (lower is better) Translates to: FLRNLSRFACCFSLLLVRQQKAW*STFPAV Trigger: CACAGCAGGGAACGTGGACCACCAGGCTTTCTGTTG...TCTCACTAGCAACAAAGAAAAACAGCAAGCGAACCTTGAGAGGTTGCGAAGGAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
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| 3UTR-3UTR CCA 90 bp | ATTCCTTCGCAACCTCTCAAGGTTCGCTTGCTGTTTTTCTTTGTTGCTAGTGAGCAACAGAAAGCCTGGTaGTCCACGTTCCCTGCTGTG | + |
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Preference number: 2 (lower is better) Translates to: IPSQPLKVRLLFFFVASEQQKAW*STFPAV Trigger: CACAGCAGGGAACGTGGACCACCAGGCTTTCTGTTG...CTCACTAGCAACAAAGAAAAACAGCAAGCGAACCTTGAGAGGTTGCGAAGGAAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
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| 3UTR-3UTR CCA 90 bp | ACCATTGCATACCTAAGACTAGATACTCCTTCACCCAGTGTTTGTAATTCAAGCGGCCAACAGAAAGCCTaGTGGTCCACGTTCCCTGCT | + |
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Preference number: 2 (lower is better) Translates to: TIAYLRLDTPSPSVCNSSGQQKA*WSTFPA Trigger: AGCAGGGAACGTGGACCACCAGGCTTTCTGTTGGCC...GCTTGAATTACAAACACTGGGTGAAGGAGTATCTAGTCTTAGGTATGCAATGGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
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| 3UTR-3UTR CCA 90 bp | ACCATTGCATACCTAAGACTAGATACTCCTTCACCCAGTGTTTGTAATTCAAGCCAACAGAAAGCCTGGTaGTCCACGTTCCCTGCTGTG | + |
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Preference number: 2 (lower is better) Translates to: TIAYLRLDTPSPSVCNSSQQKAW*STFPAV Trigger: CACAGCAGGGAACGTGGACCACCAGGCTTTCTGTTG...GCTTGAATTACAAACACTGGGTGAAGGAGTATCTAGTCTTAGGTATGCAATGGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
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| 3UTR CAA 90 bp | AGAGGAAAATACCTTGTGATTCCTTCGCAACCTCTCAAGGTTCGCTaGCTGTTTTTCTTTGTTGCTAGTGAGACACTTCATGCTACACTA | + |
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Preference number: 2 (lower is better) Translates to: RGKYLVIPSQPLKVR*LFFFVASETLHATL Trigger: TAGTGTAGCATGAAGTGTCTCACTAGCAACAAAGAAAAACAGCAAGCGAACCTTGAGAGGTTGCGAAGGAATCACAAGGTATTTTCCTCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
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| 3UTR TCA 72 bp | ATGAGGCAAAAGAAAGTACTAGAGGAAAATACCTTGTaGTTCCTTCGCAACCTCTCAAGGTTCGCTTGCTGT | + |
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Preference number: 3 (lower is better) Translates to: MRQKKVLEENTL*FLRNLSRFACC Trigger: ACAGCAAGCGAACCTTGAGAGGTTGCGAAGGAATCACAAGGTATTTTCCTCTAGTACTTTCTTTTGCCTCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
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| 3UTR-3UTR CAA 90 bp | ATTAACAGGGCAAGGCACCTATACCATGAGGCAAAAGAAAGTACTAGAGGAAAACCTCTCAAGGTTCGCTaGCTGTTTTTCTTTGTTGCT | + |
|
Preference number: 3 (lower is better) Translates to: INRARHLYHEAKESTRGKPLKVR*LFFFVA Trigger: AGCAACAAAGAAAAACAGCAAGCGAACCTTGAGAGG...TTTTCCTCTAGTACTTTCTTTTGCCTCATGGTATAGGTGCCTTGCCCTGTTAAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
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| CDS-3UTR TCA 90 bp | TGTAATTCAAGCAGGCCAACAGAAAGCCTGGTGGTCCACGTTCCCTGCTGTGATTCGTCCAGGAGCCGCTaGAATGTTGCATCCTTCTCG | + |
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Preference number: 4 (lower is better) Translates to: CNSSRPTESLVVHVPCCDSSRSR*NVASFS Trigger: CGAGAAGGATGCAACATTTCAGCGGCTCCTGGACGA...ATCACAGCAGGGAACGTGGACCACCAGGCTTTCTGTTGGCCTGCTTGAATTACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
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| CDS-3UTR GCA 90 bp | TCGCAACCTCTCAAGGTTCGCTTGCTGTTTTTCTTTGTTGCTAGTGAGACACTTGGCAGGGGTCTCCCCTaGGCCTCTCTTCACCATGGC | + |
|
Preference number: 4 (lower is better) Translates to: SQPLKVRLLFFFVASETLGRGLP*ASLHHG Trigger: GCCATGGTGAAGAGAGGCGCAGGGGAGACCCCTGCC...AAGTGTCTCACTAGCAACAAAGAAAAACAGCAAGCGAACCTTGAGAGGTTGCGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
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| CDS-3UTR GCA 90 bp | AGGGCAAGGCACCTATACCATGAGGCAAAAGAAAGTACTAGAGGAAAATACCTTGGCAGGGGTCTCCCCTaGGCCTCTCTTCACCATGGC | + |
|
Preference number: 4 (lower is better) Translates to: RARHLYHEAKESTRGKYLGRGLP*ASLHHG Trigger: GCCATGGTGAAGAGAGGCGCAGGGGAGACCCCTGCC...AAGGTATTTTCCTCTAGTACTTTCTTTTGCCTCATGGTATAGGTGCCTTGCCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
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| CDS-3UTR CCA 90 bp | ATACTCCTTCACCCAGTGTTTGTAATTCAAGCAGGCCAACAGAAAGCCTGGTGGCGCCTCTCTTCACCATaGCCAACAGGGAAGCCCTGT | + |
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Preference number: 4 (lower is better) Translates to: ILLHPVFVIQAGQQKAWWRLSSP*PTGKPC Trigger: ACAGGGCTTCCCTGTTGGCCATGGTGAAGAGAGGCG...CCACCAGGCTTTCTGTTGGCCTGCTTGAATTACAAACACTGGGTGAAGGAGTAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
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| CDS-3UTR CCA 90 bp | CCTTCGCAACCTCTCAAGGTTCGCTTGCTGTTTTTCTTTGTTGCTAGTGAGACACTGTCCACCGCAGCCTaGTTCCCAAAGAGCTGGCTG | + |
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Preference number: 4 (lower is better) Translates to: PSQPLKVRLLFFFVASETLSTAA*FPKSWL Trigger: CAGCCAGCTCTTTGGGAACCAGGCTGCGGTGGACAG...TGTCTCACTAGCAACAAAGAAAAACAGCAAGCGAACCTTGAGAGGTTGCGAAGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
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| CDS-3UTR TCA 90 bp | ATACTCCTTCACCCAGTGTTTGTAATTCAAGCAGGCCAACAGAAAGCCTGGTGGTCGTCCAGGAGCCGCTaGAATGTTGCATCCTTCTCG | + |
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Preference number: 4 (lower is better) Translates to: ILLHPVFVIQAGQQKAWWSSRSR*NVASFS Trigger: CGAGAAGGATGCAACATTTCAGCGGCTCCTGGACGA...CCACCAGGCTTTCTGTTGGCCTGCTTGAATTACAAACACTGGGTGAAGGAGTAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
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| CDS-3UTR GCA 90 bp | TGTAATTCAAGCAGGCCAACAGAAAGCCTGGTGGTCCACGTTCCCTGCTGTGATCAAGGCTTGGATCTCTaGCTTCATCTTAGAGTCTGC | + |
|
Preference number: 4 (lower is better) Translates to: CNSSRPTESLVVHVPCCDQGLDL*LHLRVC Trigger: GCAGACTCTAAGATGAAGGCAGAGATCCAAGCCTTG...ATCACAGCAGGGAACGTGGACCACCAGGCTTTCTGTTGGCCTGCTTGAATTACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
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| CDS-3UTR CCA 90 bp | GCAAGGCACCTATACCATGAGGCAAAAGAAAGTACTAGAGGAAAATACCTTGTGCTGTCCACCGCAGCCTaGTTCCCAAAGAGCTGGCTG | + |
|
Preference number: 4 (lower is better) Translates to: ARHLYHEAKESTRGKYLVLSTAA*FPKSWL Trigger: CAGCCAGCTCTTTGGGAACCAGGCTGCGGTGGACAG...CACAAGGTATTTTCCTCTAGTACTTTCTTTTGCCTCATGGTATAGGTGCCTTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
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| CDS-3UTR TCA 90 bp | TTCCTTCGCAACCTCTCAAGGTTCGCTTGCTGTTTTTCTTTGTTGCTAGTGAGATCGTCCAGGAGCCGCTaGAATGTTGCATCCTTCTCG | + |
|
Preference number: 4 (lower is better) Translates to: FLRNLSRFACCFSLLLVRSSRSR*NVASFS Trigger: CGAGAAGGATGCAACATTTCAGCGGCTCCTGGACGA...TCTCACTAGCAACAAAGAAAAACAGCAAGCGAACCTTGAGAGGTTGCGAAGGAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
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| CDS-3UTR CCA 90 bp | ATACTCCTTCACCCAGTGTTTGTAATTCAAGCAGGCCAACAGAAAGCCTGGTGGGCACTACAGGTACACTaGACTCTGGTACCATCTTCC | + |
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Preference number: 4 (lower is better) Translates to: ILLHPVFVIQAGQQKAWWALQVH*TLVPSS Trigger: GGAAGATGGTACCAGAGTCCAGTGTACCTGTAGTGC...CCACCAGGCTTTCTGTTGGCCTGCTTGAATTACAAACACTGGGTGAAGGAGTAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
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| CDS-3UTR CCA 90 bp | TGTAATTCAAGCAGGCCAACAGAAAGCCTGGTGGTCCACGTTCCCTGCTGTGATAGCAAGGTCAAGGCTTaGATCTCTGCCTTCATCTTA | + |
|
Preference number: 4 (lower is better) Translates to: CNSSRPTESLVVHVPCCDSKVKA*ISAFIL Trigger: TAAGATGAAGGCAGAGATCCAAGCCTTGACCTTGCT...ATCACAGCAGGGAACGTGGACCACCAGGCTTTCTGTTGGCCTGCTTGAATTACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
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| CDS-3UTR CCA 90 bp | TGTAATTCAAGCAGGCCAACAGAAAGCCTGGTGGTCCACGTTCCCTGCTGTGATCAAACCTCAGCTTGTTaGGTAAGTACACTCTGGACA | + |
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Preference number: 4 (lower is better) Translates to: CNSSRPTESLVVHVPCCDQTSAC*VSTLWT Trigger: TGTCCAGAGTGTACTTACCCAACAAGCTGAGGTTTG...ATCACAGCAGGGAACGTGGACCACCAGGCTTTCTGTTGGCCTGCTTGAATTACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
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| CDS-3UTR GCA 90 bp | TGTAATTCAAGCAGGCCAACAGAAAGCCTGGTGGTCCACGTTCCCTGCTGTGATAGCTTCATCTGGTCATaGTTTGTCAGTGGGATCAAA | + |
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Preference number: 4 (lower is better) Translates to: CNSSRPTESLVVHVPCCDSFIWS*FVSGIK Trigger: TTTGATCCCACTGACAAAGCATGACCAGATGAAGCT...ATCACAGCAGGGAACGTGGACCACCAGGCTTTCTGTTGGCCTGCTTGAATTACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
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| CDS-3UTR GCA 90 bp | CCTTCGCAACCTCTCAAGGTTCGCTTGCTGTTTTTCTTTGTTGCTAGTGAGACAAAGGCCTCTTCAGGATaGTGTCCAGCTTCATCTGGT | + |
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Preference number: 4 (lower is better) Translates to: PSQPLKVRLLFFFVASETKASSG*CPASSG Trigger: ACCAGATGAAGCTGGACAGCATCCTGAAGAGGCCTT...TGTCTCACTAGCAACAAAGAAAAACAGCAAGCGAACCTTGAGAGGTTGCGAAGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
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| CDS-3UTR CCA 90 bp | ACCATTGCATACCTAAGACTAGATACTCCTTCACCCAGTGTTTGTAATTCAAGCCGCCTCTCTTCACCATaGCCAACAGGGAAGCCCTGT | + |
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Preference number: 4 (lower is better) Translates to: TIAYLRLDTPSPSVCNSSRLSSP*PTGKPC Trigger: ACAGGGCTTCCCTGTTGGCCATGGTGAAGAGAGGCG...GCTTGAATTACAAACACTGGGTGAAGGAGTATCTAGTCTTAGGTATGCAATGGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
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| CDS-3UTR CCA 90 bp | TGTAATTCAAGCAGGCCAACAGAAAGCCTGGTGGTCCACGTTCCCTGCTGTGATGTCATGCTTTGTCAGTaGGATCAAACTATCCTTAGG | + |
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Preference number: 4 (lower is better) Translates to: CNSSRPTESLVVHVPCCDVMLCQ*DQTILR Trigger: CCTAAGGATAGTTTGATCCCACTGACAAAGCATGAC...ATCACAGCAGGGAACGTGGACCACCAGGCTTTCTGTTGGCCTGCTTGAATTACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
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| CDS-3UTR CCA 90 bp | TGTAATTCAAGCAGGCCAACAGAAAGCCTGGTGGTCCACGTTCCCTGCTGTGATGAGCTTCAAAAGACATaGACATGGATCCGTACTTAT | + |
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Preference number: 4 (lower is better) Translates to: CNSSRPTESLVVHVPCCDELQKT*TWIRTY Trigger: ATAAGTACGGATCCATGTCCATGTCTTTTGAAGCTC...ATCACAGCAGGGAACGTGGACCACCAGGCTTTCTGTTGGCCTGCTTGAATTACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
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| CDS-3UTR CCA 90 bp | ATTCCTTCGCAACCTCTCAAGGTTCGCTTGCTGTTTTTCTTTGTTGCTAGTGAGCTGTCCAGCTTCATCTaGTCATGCTTTGTCAGTGGG | + |
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Preference number: 4 (lower is better) Translates to: IPSQPLKVRLLFFFVASELSSFI*SCFVSG Trigger: CCCACTGACAAAGCATGACCAGATGAAGCTGGACAG...CTCACTAGCAACAAAGAAAAACAGCAAGCGAACCTTGAGAGGTTGCGAAGGAAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
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| CDS-3UTR CCA 90 bp | ATACTCCTTCACCCAGTGTTTGTAATTCAAGCAGGCCAACAGAAAGCCTGGTGGCAAACCTCAGCTTGTTaGGTAAGTACACTCTGGACA | + |
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Preference number: 4 (lower is better) Translates to: ILLHPVFVIQAGQQKAWWQTSAC*VSTLWT Trigger: TGTCCAGAGTGTACTTACCCAACAAGCTGAGGTTTG...CCACCAGGCTTTCTGTTGGCCTGCTTGAATTACAAACACTGGGTGAAGGAGTAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
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| CDS-3UTR GCA 90 bp | TCAAGGTTCGCTTGCTGTTTTTCTTTGTTGCTAGTGAGACACTTCATGCTACACAAGGCCTCTTCAGGATaGTGTCCAGCTTCATCTGGT | + |
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Preference number: 4 (lower is better) Translates to: SRFACCFSLLLVRHFMLHKASSG*CPASSG Trigger: ACCAGATGAAGCTGGACAGCATCCTGAAGAGGCCTT...GTGTAGCATGAAGTGTCTCACTAGCAACAAAGAAAAACAGCAAGCGAACCTTGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
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| CDS-3UTR GCA 90 bp | GCAAGGCACCTATACCATGAGGCAAAAGAAAGTACTAGAGGAAAATACCTTGTGAAGGCCTCTTCAGGATaGTGTCCAGCTTCATCTGGT | + |
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Preference number: 4 (lower is better) Translates to: ARHLYHEAKESTRGKYLVKASSG*CPASSG Trigger: ACCAGATGAAGCTGGACAGCATCCTGAAGAGGCCTT...CACAAGGTATTTTCCTCTAGTACTTTCTTTTGCCTCATGGTATAGGTGCCTTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
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| CDS-3UTR CCA 90 bp | AATTACTTTTACCATTGCATACCTAAGACTAGATACTCCTTCACCCAGTGTTTGCGCCTCTCTTCACCATaGCCAACAGGGAAGCCCTGT | + |
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Preference number: 4 (lower is better) Translates to: NYFYHCIPKTRYSFTQCLRLSSP*PTGKPC Trigger: ACAGGGCTTCCCTGTTGGCCATGGTGAAGAGAGGCG...CAAACACTGGGTGAAGGAGTATCTAGTCTTAGGTATGCAATGGTAAAAGTAATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
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| CDS-3UTR CCA 90 bp | TGTAAAATTACTTTTACCATTGCATACCTAAGACTAGATACTCCTTCACCCAGTCTGTCCACCGCAGCCTaGTTCCCAAAGAGCTGGCTG | + |
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Preference number: 4 (lower is better) Translates to: CKITFTIAYLRLDTPSPSLSTAA*FPKSWL Trigger: CAGCCAGCTCTTTGGGAACCAGGCTGCGGTGGACAG...ACTGGGTGAAGGAGTATCTAGTCTTAGGTATGCAATGGTAAAAGTAATTTTACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
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| CDS-3UTR CCA 90 bp | AGGGCAAGGCACCTATACCATGAGGCAAAAGAAAGTACTAGAGGAAAATACCTTGCACTACAGGTACACTaGACTCTGGTACCATCTTCC | + |
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Preference number: 4 (lower is better) Translates to: RARHLYHEAKESTRGKYLALQVH*TLVPSS Trigger: GGAAGATGGTACCAGAGTCCAGTGTACCTGTAGTGC...AAGGTATTTTCCTCTAGTACTTTCTTTTGCCTCATGGTATAGGTGCCTTGCCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
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| CDS-3UTR CCA 90 bp | ATACTCCTTCACCCAGTGTTTGTAATTCAAGCAGGCCAACAGAAAGCCTGGTGGGTCATGCTTTGTCAGTaGGATCAAACTATCCTTAGG | + |
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Preference number: 4 (lower is better) Translates to: ILLHPVFVIQAGQQKAWWVMLCQ*DQTILR Trigger: CCTAAGGATAGTTTGATCCCACTGACAAAGCATGAC...CCACCAGGCTTTCTGTTGGCCTGCTTGAATTACAAACACTGGGTGAAGGAGTAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
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| CDS-3UTR CCA 90 bp | TCAAGGTTCGCTTGCTGTTTTTCTTTGTTGCTAGTGAGACACTTCATGCTACACCTGTCCAGCTTCATCTaGTCATGCTTTGTCAGTGGG | + |
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Preference number: 4 (lower is better) Translates to: SRFACCFSLLLVRHFMLHLSSFI*SCFVSG Trigger: CCCACTGACAAAGCATGACCAGATGAAGCTGGACAG...GTGTAGCATGAAGTGTCTCACTAGCAACAAAGAAAAACAGCAAGCGAACCTTGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
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| CDS-3UTR CCA 90 bp | TTCCTTCGCAACCTCTCAAGGTTCGCTTGCTGTTTTTCTTTGTTGCTAGTGAGATGGGTAAGTACACTCTaGACAGGTAGTCTGACGACA | + |
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Preference number: 4 (lower is better) Translates to: FLRNLSRFACCFSLLLVRWVSTL*TGSLTT Trigger: TGTCGTCAGACTACCTGTCCAGAGTGTACTTACCCA...TCTCACTAGCAACAAAGAAAAACAGCAAGCGAACCTTGAGAGGTTGCGAAGGAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
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| CDS-3UTR TCA 90 bp | ATTCCTTCGCAACCTCTCAAGGTTCGCTTGCTGTTTTTCTTTGTTGCTAGTGAGGTGAAAACAGGAATATaGAAGGTGTCCCACAGCTTC | + |
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Preference number: 4 (lower is better) Translates to: IPSQPLKVRLLFFFVASEVKTGI*KVSHSF Trigger: GAAGCTGTGGGACACCTTTCATATTCCTGTTTTCAC...CTCACTAGCAACAAAGAAAAACAGCAAGCGAACCTTGAGAGGTTGCGAAGGAAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
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| CDS-3UTR CCA 90 bp | ATTAACAGGGCAAGGCACCTATACCATGAGGCAAAAGAAAGTACTAGAGGAAAAGCACTACAGGTACACTaGACTCTGGTACCATCTTCC | + |
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Preference number: 4 (lower is better) Translates to: INRARHLYHEAKESTRGKALQVH*TLVPSS Trigger: GGAAGATGGTACCAGAGTCCAGTGTACCTGTAGTGC...TTTTCCTCTAGTACTTTCTTTTGCCTCATGGTATAGGTGCCTTGCCCTGTTAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
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| CDS-3UTR TCA 90 bp | TCAAGGTTCGCTTGCTGTTTTTCTTTGTTGCTAGTGAGACACTTCATGCTACACGTGAAAACAGGAATATaGAAGGTGTCCCACAGCTTC | + |
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Preference number: 4 (lower is better) Translates to: SRFACCFSLLLVRHFMLHVKTGI*KVSHSF Trigger: GAAGCTGTGGGACACCTTTCATATTCCTGTTTTCAC...GTGTAGCATGAAGTGTCTCACTAGCAACAAAGAAAAACAGCAAGCGAACCTTGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
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| CDS-3UTR TCA 90 bp | GCAAGGCACCTATACCATGAGGCAAAAGAAAGTACTAGAGGAAAATACCTTGTGAAGGTCAACACAGAATaGGCATTGCTCCTCTTGGTT | + |
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Preference number: 4 (lower is better) Translates to: ARHLYHEAKESTRGKYLVKVNTE*ALLLLV Trigger: AACCAAGAGGAGCAATGCTCATTCTGTGTTGACCTT...CACAAGGTATTTTCCTCTAGTACTTTCTTTTGCCTCATGGTATAGGTGCCTTGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109126.5 |
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| CDS-3UTR GCA 90 bp | TCGCAACCTCTCAAGGTTCGCTTGCTGTTTTTCTTTGTTGCTAGTGAGACACTTAGCTTCATCTGGTCATaGTTTGTCAGTGGGATCAAA | + |
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Preference number: 4 (lower is better) Translates to: SQPLKVRLLFFFVASETLSFIWS*FVSGIK Trigger: TTTGATCCCACTGACAAAGCATGACCAGATGAAGCT...AAGTGTCTCACTAGCAACAAAGAAAAACAGCAAGCGAACCTTGAGAGGTTGCGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
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| CDS-3UTR GCA 90 bp | ATTCCTTCGCAACCTCTCAAGGTTCGCTTGCTGTTTTTCTTTGTTGCTAGTGAGCTTCATCTTAGAGTCTaGCATCATCTCCAGCTCTTT | + |
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Preference number: 4 (lower is better) Translates to: IPSQPLKVRLLFFFVASELHLRV*HHLQLF Trigger: AAAGAGCTGGAGATGATGGCAGACTCTAAGATGAAG...CTCACTAGCAACAAAGAAAAACAGCAAGCGAACCTTGAGAGGTTGCGAAGGAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
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| CDS-3UTR GCA 90 bp | ATTAACAGGGCAAGGCACCTATACCATGAGGCAAAAGAAAGTACTAGAGGAAAACAAGGCTTGGATCTCTaGCTTCATCTTAGAGTCTGC | + |
|
Preference number: 4 (lower is better) Translates to: INRARHLYHEAKESTRGKQGLDL*LHLRVC Trigger: GCAGACTCTAAGATGAAGGCAGAGATCCAAGCCTTG...TTTTCCTCTAGTACTTTCTTTTGCCTCATGGTATAGGTGCCTTGCCCTGTTAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
||
| CDS-3UTR CCA 90 bp | ATTCCTTCGCAACCTCTCAAGGTTCGCTTGCTGTTTTTCTTTGTTGCTAGTGAGAAGCCATCTGATTGTTaGGATAGTGAGATTGTGAGC | + |
|
Preference number: 4 (lower is better) Translates to: IPSQPLKVRLLFFFVASEKPSDC*DSEIVS Trigger: GCTCACAATCTCACTATCCCAACAATCAGATGGCTT...CTCACTAGCAACAAAGAAAAACAGCAAGCGAACCTTGAGAGGTTGCGAAGGAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
||
| 3UTR CAA 72 bp | TACCTTGTGATTCCTTCGCAACCTCTCAAGGTTCGCTaGCTGTTTTTCTTTGTTGCTAGTGAGACACTTCAT | + |
|
Preference number: 4 (lower is better) Translates to: YLVIPSQPLKVR*LFFFVASETLH Trigger: ATGAAGTGTCTCACTAGCAACAAAGAAAAACAGCAAGCGAACCTTGAGAGGTTGCGAAGGAATCACAAGGTA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
||
| CDS-3UTR TCA 90 bp | ATTCCTTCGCAACCTCTCAAGGTTCGCTTGCTGTTTTTCTTTGTTGCTAGTGAGTTGGTGAATCGCTTCTaGTTTTTCTTGTGGTACACT | + |
|
Preference number: 4 (lower is better) Translates to: IPSQPLKVRLLFFFVASELVNRF*FFLWYT Trigger: AGTGTACCACAAGAAAAATCAGAAGCGATTCACCAA...CTCACTAGCAACAAAGAAAAACAGCAAGCGAACCTTGAGAGGTTGCGAAGGAAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
||
| CDS-3UTR TCA 90 bp | ACCATTGCATACCTAAGACTAGATACTCCTTCACCCAGTGTTTGTAATTCAAGCGTGAAAACAGGAATATaGAAGGTGTCCCACAGCTTC | + |
|
Preference number: 4 (lower is better) Translates to: TIAYLRLDTPSPSVCNSSVKTGI*KVSHSF Trigger: GAAGCTGTGGGACACCTTTCATATTCCTGTTTTCAC...GCTTGAATTACAAACACTGGGTGAAGGAGTATCTAGTCTTAGGTATGCAATGGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
||
| CDS-3UTR GCA 90 bp | TTCCTTCGCAACCTCTCAAGGTTCGCTTGCTGTTTTTCTTTGTTGCTAGTGAGAATCCGTACTTATAGATaGACATTATCTCGATGCCGT | + |
|
Preference number: 4 (lower is better) Translates to: FLRNLSRFACCFSLLLVRIRTYR*TLSRCR Trigger: ACGGCATCGAGATAATGTGCATCTATAAGTACGGAT...TCTCACTAGCAACAAAGAAAAACAGCAAGCGAACCTTGAGAGGTTGCGAAGGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
||
| CDS-3UTR GCA 90 bp | TCGCAACCTCTCAAGGTTCGCTTGCTGTTTTTCTTTGTTGCTAGTGAGACACTTATCCGTACTTATAGATaGACATTATCTCGATGCCGT | + |
|
Preference number: 4 (lower is better) Translates to: SQPLKVRLLFFFVASETLIRTYR*TLSRCR Trigger: ACGGCATCGAGATAATGTGCATCTATAAGTACGGAT...AAGTGTCTCACTAGCAACAAAGAAAAACAGCAAGCGAACCTTGAGAGGTTGCGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
||
| CDS-3UTR GCA 90 bp | TACCTAAGACTAGATACTCCTTCACCCAGTGTTTGTAATTCAAGCAGGCCAACAAGCTTCATCTGGTCATaGTTTGTCAGTGGGATCAAA | + |
|
Preference number: 4 (lower is better) Translates to: YLRLDTPSPSVCNSSRPTSFIWS*FVSGIK Trigger: TTTGATCCCACTGACAAAGCATGACCAGATGAAGCT...TGTTGGCCTGCTTGAATTACAAACACTGGGTGAAGGAGTATCTAGTCTTAGGTA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
||
| CDS-3UTR GCA 90 bp | TACCTAAGACTAGATACTCCTTCACCCAGTGTTTGTAATTCAAGCAGGCCAACACTTCATCTTAGAGTCTaGCATCATCTCCAGCTCTTT | + |
|
Preference number: 4 (lower is better) Translates to: YLRLDTPSPSVCNSSRPTLHLRV*HHLQLF Trigger: AAAGAGCTGGAGATGATGGCAGACTCTAAGATGAAG...TGTTGGCCTGCTTGAATTACAAACACTGGGTGAAGGAGTATCTAGTCTTAGGTA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
||
| CDS-3UTR GCA 90 bp | TCAAGGTTCGCTTGCTGTTTTTCTTTGTTGCTAGTGAGACACTTCATGCTACACACACAGAATGAGCATTaGTCCTCTTGGTTGCATAAG | + |
|
Preference number: 4 (lower is better) Translates to: SRFACCFSLLLVRHFMLHTQNEH*SSWLHK Trigger: CTTATGCAACCAAGAGGAGCAATGCTCATTCTGTGT...GTGTAGCATGAAGTGTCTCACTAGCAACAAAGAAAAACAGCAAGCGAACCTTGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000109126.5 |
||
| CDS-3UTR CCA 90 bp | TCGCAACCTCTCAAGGTTCGCTTGCTGTTTTTCTTTGTTGCTAGTGAGACACTTGAGCTTCAAAAGACATaGACATGGATCCGTACTTAT | + |
|
Preference number: 4 (lower is better) Translates to: SQPLKVRLLFFFVASETLELQKT*TWIRTY Trigger: ATAAGTACGGATCCATGTCCATGTCTTTTGAAGCTC...AAGTGTCTCACTAGCAACAAAGAAAAACAGCAAGCGAACCTTGAGAGGTTGCGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
||
| CDS-3UTR CCA 90 bp | ACCATTGCATACCTAAGACTAGATACTCCTTCACCCAGTGTTTGTAATTCAAGCCAAACCTCAGCTTGTTaGGTAAGTACACTCTGGACA | + |
|
Preference number: 4 (lower is better) Translates to: TIAYLRLDTPSPSVCNSSQTSAC*VSTLWT Trigger: TGTCCAGAGTGTACTTACCCAACAAGCTGAGGTTTG...GCTTGAATTACAAACACTGGGTGAAGGAGTATCTAGTCTTAGGTATGCAATGGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
||
| CDS-3UTR TCA 90 bp | ACCATTGCATACCTAAGACTAGATACTCCTTCACCCAGTGTTTGTAATTCAAGCATCTGTTGTCTATTGTaGAGGCAGGCACTTCATTTC | + |
|
Preference number: 4 (lower is better) Translates to: TIAYLRLDTPSPSVCNSSICCLL*RQALHF Trigger: GAAATGAAGTGCCTGCCTTCACAATAGACAACAGAT...GCTTGAATTACAAACACTGGGTGAAGGAGTATCTAGTCTTAGGTATGCAATGGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050442.15 |
||
| CDS-3UTR TCA 90 bp | TACCTAAGACTAGATACTCCTTCACCCAGTGTTTGTAATTCAAGCAGGCCAACATTGGTGAATCGCTTCTaGTTTTTCTTGTGGTACACT | + |
|
Preference number: 4 (lower is better) Translates to: YLRLDTPSPSVCNSSRPTLVNRF*FFLWYT Trigger: AGTGTACCACAAGAAAAATCAGAAGCGATTCACCAA...TGTTGGCCTGCTTGAATTACAAACACTGGGTGAAGGAGTATCTAGTCTTAGGTA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
||
| CDS-3UTR GCA 90 bp | ATTAACAGGGCAAGGCACCTATACCATGAGGCAAAAGAAAGTACTAGAGGAAAAATTGCTCCTCTTGGTTaGATAAGTGTCGCTCTGTAT | + |
|
Preference number: 4 (lower is better) Translates to: INRARHLYHEAKESTRGKIAPLG*ISVALY Trigger: ATACAGAGCGACACTTATGCAACCAAGAGGAGCAAT...TTTTCCTCTAGTACTTTCTTTTGCCTCATGGTATAGGTGCCTTGCCCTGTTAAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000109126.5 |
||
| CDS-3UTR CCA 90 bp | TCAAGGTTCGCTTGCTGTTTTTCTTTGTTGCTAGTGAGACACTTCATGCTACACAGTATATGTCTCTCTTaGTTGCATAAGTGTCGCTCT | + |
|
Preference number: 4 (lower is better) Translates to: SRFACCFSLLLVRHFMLHSICLS*LHKCRS Trigger: AGAGCGACACTTATGCAACCAAGAGAGACATATACT...GTGTAGCATGAAGTGTCTCACTAGCAACAAAGAAAAACAGCAAGCGAACCTTGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 |
||
| CDS-3UTR CCA 90 bp | GCAAGGCACCTATACCATGAGGCAAAAGAAAGTACTAGAGGAAAATACCTTGTGCAAAAGACATGGACATaGATCCGTACTTATAGATGC | + |
|
Preference number: 4 (lower is better) Translates to: ARHLYHEAKESTRGKYLVQKTWT*IRTYRC Trigger: GCATCTATAAGTACGGATCCATGTCCATGTCTTTTG...CACAAGGTATTTTCCTCTAGTACTTTCTTTTGCCTCATGGTATAGGTGCCTTGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
||
| CDS-3UTR CCA 90 bp | ACCATTGCATACCTAAGACTAGATACTCCTTCACCCAGTGTTTGTAATTCAAGCAAGCCATCTGATTGTTaGGATAGTGAGATTGTGAGC | + |
|
Preference number: 4 (lower is better) Translates to: TIAYLRLDTPSPSVCNSSKPSDC*DSEIVS Trigger: GCTCACAATCTCACTATCCCAACAATCAGATGGCTT...GCTTGAATTACAAACACTGGGTGAAGGAGTATCTAGTCTTAGGTATGCAATGGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
||
| CDS-3UTR CCA 90 bp | TACCTAAGACTAGATACTCCTTCACCCAGTGTTTGTAATTCAAGCAGGCCAACAGGTATATTTAACCTCTaGATATCAGAAGGGAGGAGA | + |
|
Preference number: 4 (lower is better) Translates to: YLRLDTPSPSVCNSSRPTGIFNL*ISEGRR Trigger: TCTCCTCCCTTCTGATATCCAGAGGTTAAATATACC...TGTTGGCCTGCTTGAATTACAAACACTGGGTGAAGGAGTATCTAGTCTTAGGTA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
||
| CDS-3UTR TCA 90 bp | ATTACTTTTACCATTGCATACCTAAGACTAGATACTCCTTCACCCAGTGTTTGTGAAACTTCGCATCTGTaGTCAGATGCTGCATTCCTT | + |
|
Preference number: 4 (lower is better) Translates to: ITFTIAYLRLDTPSPSVCETSHL*SDAAFL Trigger: AAGGAATGCAGCATCTGATCACAGATGCGAAGTTTC...ACAAACACTGGGTGAAGGAGTATCTAGTCTTAGGTATGCAATGGTAAAAGTAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
||
| CDS-3UTR CCA 90 bp | AAAGAAAGTACTAGAGGAAAATACCTTGTGATTCCTTCGCAACCTCTCAAGGTTAAGCCATCTGATTGTTaGGATAGTGAGATTGTGAGC | + |
|
Preference number: 4 (lower is better) Translates to: KESTRGKYLVIPSQPLKVKPSDC*DSEIVS Trigger: GCTCACAATCTCACTATCCCAACAATCAGATGGCTT...AACCTTGAGAGGTTGCGAAGGAATCACAAGGTATTTTCCTCTAGTACTTTCTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
||
| CDS-3UTR CCA 90 bp | ACCATTGCATACCTAAGACTAGATACTCCTTCACCCAGTGTTTGTAATTCAAGCGGTATATTTAACCTCTaGATATCAGAAGGGAGGAGA | + |
|
Preference number: 4 (lower is better) Translates to: TIAYLRLDTPSPSVCNSSGIFNL*ISEGRR Trigger: TCTCCTCCCTTCTGATATCCAGAGGTTAAATATACC...GCTTGAATTACAAACACTGGGTGAAGGAGTATCTAGTCTTAGGTATGCAATGGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
||
| CDS-3UTR CCA 90 bp | TGTAAAATTACTTTTACCATTGCATACCTAAGACTAGATACTCCTTCACCCAGTTGGGTAAGTACACTCTaGACAGGTAGTCTGACGACA | + |
|
Preference number: 4 (lower is better) Translates to: CKITFTIAYLRLDTPSPSWVSTL*TGSLTT Trigger: TGTCGTCAGACTACCTGTCCAGAGTGTACTTACCCA...ACTGGGTGAAGGAGTATCTAGTCTTAGGTATGCAATGGTAAAAGTAATTTTACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
||
| CDS-3UTR TCA 90 bp | AAAGAAAGTACTAGAGGAAAATACCTTGTGATTCCTTCGCAACCTCTCAAGGTTTTGGTGAATCGCTTCTaGTTTTTCTTGTGGTACACT | + |
|
Preference number: 4 (lower is better) Translates to: KESTRGKYLVIPSQPLKVLVNRF*FFLWYT Trigger: AGTGTACCACAAGAAAAATCAGAAGCGATTCACCAA...AACCTTGAGAGGTTGCGAAGGAATCACAAGGTATTTTCCTCTAGTACTTTCTTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
||
| CDS-3UTR GCA 90 bp | ATTACTTTTACCATTGCATACCTAAGACTAGATACTCCTTCACCCAGTGTTTGTCTTCATCTTAGAGTCTaGCATCATCTCCAGCTCTTT | + |
|
Preference number: 4 (lower is better) Translates to: ITFTIAYLRLDTPSPSVCLHLRV*HHLQLF Trigger: AAAGAGCTGGAGATGATGGCAGACTCTAAGATGAAG...ACAAACACTGGGTGAAGGAGTATCTAGTCTTAGGTATGCAATGGTAAAAGTAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
||
| CDS-3UTR CCA 90 bp | AATTACTTTTACCATTGCATACCTAAGACTAGATACTCCTTCACCCAGTGTTTGGTCATGCTTTGTCAGTaGGATCAAACTATCCTTAGG | + |
|
Preference number: 4 (lower is better) Translates to: NYFYHCIPKTRYSFTQCLVMLCQ*DQTILR Trigger: CCTAAGGATAGTTTGATCCCACTGACAAAGCATGAC...CAAACACTGGGTGAAGGAGTATCTAGTCTTAGGTATGCAATGGTAAAAGTAATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
||
| CDS-3UTR CCA 90 bp | TGTAAAATTACTTTTACCATTGCATACCTAAGACTAGATACTCCTTCACCCAGTAGCAAGGTCAAGGCTTaGATCTCTGCCTTCATCTTA | + |
|
Preference number: 4 (lower is better) Translates to: CKITFTIAYLRLDTPSPSSKVKA*ISAFIL Trigger: TAAGATGAAGGCAGAGATCCAAGCCTTGACCTTGCT...ACTGGGTGAAGGAGTATCTAGTCTTAGGTATGCAATGGTAAAAGTAATTTTACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
||
| CDS-3UTR CCA 90 bp | ATTACTTTTACCATTGCATACCTAAGACTAGATACTCCTTCACCCAGTGTTTGTCAAAAGACATGGACATaGATCCGTACTTATAGATGC | + |
|
Preference number: 4 (lower is better) Translates to: ITFTIAYLRLDTPSPSVCQKTWT*IRTYRC Trigger: GCATCTATAAGTACGGATCCATGTCCATGTCTTTTG...ACAAACACTGGGTGAAGGAGTATCTAGTCTTAGGTATGCAATGGTAAAAGTAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
||
| CDS-3UTR CCA 90 bp | ATTACTTTTACCATTGCATACCTAAGACTAGATACTCCTTCACCCAGTGTTTGTGAGCTTCAAAAGACATaGACATGGATCCGTACTTAT | + |
|
Preference number: 4 (lower is better) Translates to: ITFTIAYLRLDTPSPSVCELQKT*TWIRTY Trigger: ATAAGTACGGATCCATGTCCATGTCTTTTGAAGCTC...ACAAACACTGGGTGAAGGAGTATCTAGTCTTAGGTATGCAATGGTAAAAGTAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
||
| CDS-3UTR GCA 90 bp | GCTAGTGAGACACTTCATGCTACACTAGCTATGTTGCAAGAAGTAAATATTTTTATCCGTACTTATAGATaGACATTATCTCGATGCCGT | + |
|
Preference number: 4 (lower is better) Translates to: ASETLHATLAMLQEVNIFIRTYR*TLSRCR Trigger: ACGGCATCGAGATAATGTGCATCTATAAGTACGGAT...AAAAATATTTACTTCTTGCAACATAGCTAGTGTAGCATGAAGTGTCTCACTAGC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
||
| CDS-3UTR CCA 90 bp | GCTAGTGAGACACTTCATGCTACACTAGCTATGTTGCAAGAAGTAAATATTTTTAGTATATGTCTCTCTTaGTTGCATAAGTGTCGCTCT | + |
|
Preference number: 4 (lower is better) Translates to: ASETLHATLAMLQEVNIFSICLS*LHKCRS Trigger: AGAGCGACACTTATGCAACCAAGAGAGACATATACT...AAAAATATTTACTTCTTGCAACATAGCTAGTGTAGCATGAAGTGTCTCACTAGC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 |
||
| CDS-3UTR CCA 90 bp | GCTAGTGAGACACTTCATGCTACACTAGCTATGTTGCAAGAAGTAAATATTTTTCAAAAGACATGGACATaGATCCGTACTTATAGATGC | + |
|
Preference number: 4 (lower is better) Translates to: ASETLHATLAMLQEVNIFQKTWT*IRTYRC Trigger: GCATCTATAAGTACGGATCCATGTCCATGTCTTTTG...AAAAATATTTACTTCTTGCAACATAGCTAGTGTAGCATGAAGTGTCTCACTAGC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
||
| CDS-3UTR CCA 90 bp | GCTAGTGAGACACTTCATGCTACACTAGCTATGTTGCAAGAAGTAAATATTTTTGGTATATTTAACCTCTaGATATCAGAAGGGAGGAGA | + |
|
Preference number: 4 (lower is better) Translates to: ASETLHATLAMLQEVNIFGIFNL*ISEGRR Trigger: TCTCCTCCCTTCTGATATCCAGAGGTTAAATATACC...AAAAATATTTACTTCTTGCAACATAGCTAGTGTAGCATGAAGTGTCTCACTAGC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
||
| CDS GCA 90 bp | GTCTCCCCTGCGCCTCTCTTCACCATGGCCAACAGGGAAGCCCTGTaGCGATCCAGGGCGTCGAAGAACGAGGCCTCGGGCCCCATAGGC | + |
|
Preference number: 5 (lower is better) Translates to: VSPAPLFTMANREAL*RSRASKNEASGPIG Trigger: GCCTATGGGGCCCGAGGCCTCGTTCTTCGACGCCCTGGATCGGCACAGGGCTTCCCTGTTGGCCATGGTGAAGAGAGGCGCAGGGGAGAC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
||
| CDS CCA 90 bp | GCAGACTCCTCCTGGGCACTTTCAGCATACAGGAAATGTCATCGATaGCGCTGTCCACCGCAGCCTGGTTCCCAAAGAGCTGGCTGTCAG | + |
|
Preference number: 5 (lower is better) Translates to: ADSSWALSAYRKCHR*RCPPQPGSQRAGCQ Trigger: CTGACAGCCAGCTCTTTGGGAACCAGGCTGCGGTGGACAGCGCCATCGATGACATTTCCTGTATGCTGAAAGTGCCCAGGAGGAGTCTGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
||
| CDS TCA 90 bp | ATGCACGGGGACATCCTGCTGCAGAAGTTGTCGTCCAGGAGCCGCTaGAATGTTGCATCCTTCTCGACTATTAACAGAAACTTCGCATCT | + |
|
Preference number: 5 (lower is better) Translates to: MHGDILLQKLSSRSR*NVASFSTINRNFAS Trigger: AGATGCGAAGTTTCTGTTAATAGTCGAGAAGGATGCAACATTTCAGCGGCTCCTGGACGACAACTTCTGCAGCAGGATGTCCCCGTGCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
||
| CDS TCA 90 bp | ACTATTAACAGAAACTTCGCATCTGTGATCAGATGCTGCATTCCTTaGATGTTAGTCGGCACAGCAGTAGCCGTGGCACTACAGGTACAC | + |
|
Preference number: 5 (lower is better) Translates to: TINRNFASVIRCCIP*MLVGTAVAVALQVH Trigger: GTGTACCTGTAGTGCCACGGCTACTGCTGTGCCGACTAACATTCAAGGAATGCAGCATCTGATCACAGATGCGAAGTTTCTGTTAATAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
||
| CDS TCA 90 bp | AGATGCACATTATCTCGATGCCGTAGGGATCTGCATCGACCAGTGTaGAAACAGGAATATGAAAGGTGTCCCACAGCTTCTTTACCAAGA | + |
|
Preference number: 5 (lower is better) Translates to: RCTLSRCRRDLHRPV*KQEYERCPTASLPR Trigger: TCTTGGTAAAGAAGCTGTGGGACACCTTTCATATTCCTGTTTTCACACTGGTCGATGCAGATCCCTACGGCATCGAGATAATGTGCATCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
||
| CDS-3UTR CAA 90 bp | ATTCCTTCGCAACCTCTCAAGGTTCGCTTGCTGTTTTTCTTTGTTGCTAGTGAGGGAGCCGCTGAAATGTaGCATCCTTCTCGACTATTA | + |
|
Preference number: 5 (lower is better) Translates to: IPSQPLKVRLLFFFVASEGAAEM*HPSRLL Trigger: TAATAGTCGAGAAGGATGCAACATTTCAGCGGCTCC...CTCACTAGCAACAAAGAAAAACAGCAAGCGAACCTTGAGAGGTTGCGAAGGAAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
||
| CDS-3UTR CAA 90 bp | TCAAGGTTCGCTTGCTGTTTTTCTTTGTTGCTAGTGAGACACTTCATGCTACACCAGCAAGGTCAAGGCTaGGATCTCTGCCTTCATCTT | + |
|
Preference number: 5 (lower is better) Translates to: SRFACCFSLLLVRHFMLHQQGQG*DLCLHL Trigger: AAGATGAAGGCAGAGATCCAAGCCTTGACCTTGCTG...GTGTAGCATGAAGTGTCTCACTAGCAACAAAGAAAAACAGCAAGCGAACCTTGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
||
| CDS-3UTR CAA 90 bp | TACCTAAGACTAGATACTCCTTCACCCAGTGTTTGTAATTCAAGCAGGCCAACACAGCAAGGTCAAGGCTaGGATCTCTGCCTTCATCTT | + |
|
Preference number: 5 (lower is better) Translates to: YLRLDTPSPSVCNSSRPTQQGQG*DLCLHL Trigger: AAGATGAAGGCAGAGATCCAAGCCTTGACCTTGCTG...TGTTGGCCTGCTTGAATTACAAACACTGGGTGAAGGAGTATCTAGTCTTAGGTA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
||
| CDS-3UTR CAA 90 bp | AGGGCAAGGCACCTATACCATGAGGCAAAAGAAAGTACTAGAGGAAAATACCTTCAGCAAGGTCAAGGCTaGGATCTCTGCCTTCATCTT | + |
|
Preference number: 5 (lower is better) Translates to: RARHLYHEAKESTRGKYLQQGQG*DLCLHL Trigger: AAGATGAAGGCAGAGATCCAAGCCTTGACCTTGCTG...AAGGTATTTTCCTCTAGTACTTTCTTTTGCCTCATGGTATAGGTGCCTTGCCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
||
| CDS-3UTR CAA 90 bp | TACCTAAGACTAGATACTCCTTCACCCAGTGTTTGTAATTCAAGCAGGCCAACAGGAGCCGCTGAAATGTaGCATCCTTCTCGACTATTA | + |
|
Preference number: 5 (lower is better) Translates to: YLRLDTPSPSVCNSSRPTGAAEM*HPSRLL Trigger: TAATAGTCGAGAAGGATGCAACATTTCAGCGGCTCC...TGTTGGCCTGCTTGAATTACAAACACTGGGTGAAGGAGTATCTAGTCTTAGGTA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
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| CDS TCA 90 bp | TTAACTGATTTTGGTGAATCGCTTCTGATTTTTCTTGTGGTACACTaGGGTATCATCCGAAGGCCGACAGAATCATCAAACCTAGAGGCC | + |
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Preference number: 5 (lower is better) Translates to: LTDFGESLLIFLVVH*GIIRRPTESSNLEA Trigger: GGCCTCTAGGTTTGATGATTCTGTCGGCCTTCGGATGATACCTCAGTGTACCACAAGAAAAATCAGAAGCGATTCACCAAAATCAGTTAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000109125.8 ENSMUST00000109126.5 |
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| CDS-3UTR CAA 90 bp | TTCCTTCGCAACCTCTCAAGGTTCGCTTGCTGTTTTTCTTTGTTGCTAGTGAGAATATGTCTCTCTTGGTaGCATAAGTGTCGCTCTGTA | + |
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Preference number: 5 (lower is better) Translates to: FLRNLSRFACCFSLLLVRICLSW*HKCRSV Trigger: TACAGAGCGACACTTATGCAACCAAGAGAGACATAT...TCTCACTAGCAACAAAGAAAAACAGCAAGCGAACCTTGAGAGGTTGCGAAGGAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 |
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| CDS-3UTR CAA 90 bp | GCAAGGCACCTATACCATGAGGCAAAAGAAAGTACTAGAGGAAAATACCTTGTGTCCATGTATCTCAAGTaGCCAGCAATCAATCCCTTG | + |
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Preference number: 5 (lower is better) Translates to: ARHLYHEAKESTRGKYLVSMYLK*PAINPL Trigger: CAAGGGATTGATTGCTGGCAACTTGAGATACATGGA...CACAAGGTATTTTCCTCTAGTACTTTCTTTTGCCTCATGGTATAGGTGCCTTGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
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| CDS-3UTR CAA 90 bp | AGGGCAAGGCACCTATACCATGAGGCAAAAGAAAGTACTAGAGGAAAATACCTTTCCATGTATCTCAAGTaGCCAGCAATCAATCCCTTG | + |
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Preference number: 5 (lower is better) Translates to: RARHLYHEAKESTRGKYLSMYLK*PAINPL Trigger: CAAGGGATTGATTGCTGGCAACTTGAGATACATGGA...AAGGTATTTTCCTCTAGTACTTTCTTTTGCCTCATGGTATAGGTGCCTTGCCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
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| CDS-3UTR CAA 90 bp | ATTAACAGGGCAAGGCACCTATACCATGAGGCAAAAGAAAGTACTAGAGGAAAAATATGTCTCTCTTGGTaGCATAAGTGTCGCTCTGTA | + |
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Preference number: 5 (lower is better) Translates to: INRARHLYHEAKESTRGKICLSW*HKCRSV Trigger: TACAGAGCGACACTTATGCAACCAAGAGAGACATAT...TTTTCCTCTAGTACTTTCTTTTGCCTCATGGTATAGGTGCCTTGCCCTGTTAAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 |
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| CDS-3UTR CAA 90 bp | ATTACTTTTACCATTGCATACCTAAGACTAGATACTCCTTCACCCAGTGTTTGTGGAGCCGCTGAAATGTaGCATCCTTCTCGACTATTA | + |
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Preference number: 5 (lower is better) Translates to: ITFTIAYLRLDTPSPSVCGAAEM*HPSRLL Trigger: TAATAGTCGAGAAGGATGCAACATTTCAGCGGCTCC...ACAAACACTGGGTGAAGGAGTATCTAGTCTTAGGTATGCAATGGTAAAAGTAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
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| CDS-3UTR CAA 90 bp | TGTAAAATTACTTTTACCATTGCATACCTAAGACTAGATACTCCTTCACCCAGTTCCATGTATCTCAAGTaGCCAGCAATCAATCCCTTG | + |
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Preference number: 5 (lower is better) Translates to: CKITFTIAYLRLDTPSPSSMYLK*PAINPL Trigger: CAAGGGATTGATTGCTGGCAACTTGAGATACATGGA...ACTGGGTGAAGGAGTATCTAGTCTTAGGTATGCAATGGTAAAAGTAATTTTACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
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| CDS TCA 90 bp | TTAACTGATTTTGGTGAATCGCTTCTGATTTTTCTTGTGGTACACTaGGGTATCATCCGAAGGCCGACAGAATCATCAAACATTATGTTT | + |
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Preference number: 5 (lower is better) Translates to: LTDFGESLLIFLVVH*GIIRRPTESSNIMF Trigger: AAACATAATGTTTGATGATTCTGTCGGCCTTCGGATGATACCTCAGTGTACCACAAGAAAAATCAGAAGCGATTCACCAAAATCAGTTAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000050442.15 |
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| CDS GCA 90 bp | AGTATATGTCTCTATGCAGATGCAAGGTCAACACAGAATGAGCATTaGTCCTCTTGGTTGCATAAGTGTCGCTCTGTATTAATTTATAAA | + |
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Preference number: 5 (lower is better) Translates to: SICLYADARSTQNEH*SSWLHKCRSVLIYK Trigger: TTTATAAATTAATACAGAGCGACACTTATGCAACCAAGAGGAGCAATGCTCATTCTGTGTTGACCTTGCATCTGCATAGAGACATATACT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109126.5 |
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| CDS GCA 72 bp | GCGCCTCTCTTCACCATGGCCAACAGGGAAGCCCTGTaGCGATCCAGGGCGTCGAAGAACGAGGCCTCGGGC | + |
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Preference number: 6 (lower is better) Translates to: APLFTMANREAL*RSRASKNEASG Trigger: GCCCGAGGCCTCGTTCTTCGACGCCCTGGATCGGCACAGGGCTTCCCTGTTGGCCATGGTGAAGAGAGGCGC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
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| CDS CAA 72 bp | TCCTCCATGTATCTCAAGTTGCCAGCAATCAATCCCTaGGAAGTAGATAGCACGTGCAGACTCCTCCTGGGC | + |
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Preference number: 6 (lower is better) Translates to: SSMYLKLPAINP*EVDSTCRLLLG Trigger: GCCCAGGAGGAGTCTGCACGTGCTATCTACTTCCAAGGGATTGATTGCTGGCAACTTGAGATACATGGAGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
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| CDS CAA 90 bp | GTACCATCTTCCTCCATGTATCTCAAGTTGCCAGCAATCAATCCCTaGGAAGTAGATAGCACGTGCAGACTCCTCCTGGGCACTTTCAGC | + |
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Preference number: 6 (lower is better) Translates to: VPSSSMYLKLPAINP*EVDSTCRLLLGTFS Trigger: GCTGAAAGTGCCCAGGAGGAGTCTGCACGTGCTATCTACTTCCAAGGGATTGATTGCTGGCAACTTGAGATACATGGAGGAAGATGGTAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
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| CDS CCA 72 bp | ATCCTCCAAACCTCAGCTTGTTGGGTAAGTACACTCTaGACAGGTAGTCTGACGACAGCAAGGTCAAGGCTT | + |
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Preference number: 6 (lower is better) Translates to: ILQTSACWVSTL*TGSLTTARSRL Trigger: AAGCCTTGACCTTGCTGTCGTCAGACTACCTGTCCAGAGTGTACTTACCCAACAAGCTGAGGTTTGGAGGAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
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| CDS CAA 72 bp | CAGAAACTTCGCATCTGTGATCAGATGCTGCATTCCTaGAATGTTAGTCGGCACAGCAGTAGCCGTGGCACT | + |
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Preference number: 6 (lower is better) Translates to: QKLRICDQMLHS*NVSRHSSSRGT Trigger: AGTGCCACGGCTACTGCTGTGCCGACTAACATTCAAGGAATGCAGCATCTGATCACAGATGCGAAGTTTCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
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| CDS CAA 90 bp | CAGGTACACTGGACTCTGGTACCATCTTCCTCCATGTATCTCAAGTaGCCAGCAATCAATCCCTTGGAAGTAGATAGCACGTGCAGACTC | + |
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Preference number: 6 (lower is better) Translates to: QVHWTLVPSSSMYLK*PAINPLEVDSTCRL Trigger: GAGTCTGCACGTGCTATCTACTTCCAAGGGATTGATTGCTGGCAACTTGAGATACATGGAGGAAGATGGTACCAGAGTCCAGTGTACCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
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| CDS TCA 72 bp | AGAAACTTCGCATCTGTGATCAGATGCTGCATTCCTTaGATGTTAGTCGGCACAGCAGTAGCCGTGGCACTA | + |
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Preference number: 6 (lower is better) Translates to: RNFASVIRCCIP*MLVGTAVAVAL Trigger: TAGTGCCACGGCTACTGCTGTGCCGACTAACATTCAAGGAATGCAGCATCTGATCACAGATGCGAAGTTTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
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| CDS TCA 72 bp | GACATCCTGCTGCAGAAGTTGTCGTCCAGGAGCCGCTaGAATGTTGCATCCTTCTCGACTATTAACAGAAAC | + |
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Preference number: 6 (lower is better) Translates to: DILLQKLSSRSR*NVASFSTINRN Trigger: GTTTCTGTTAATAGTCGAGAAGGATGCAACATTTCAGCGGCTCCTGGACGACAACTTCTGCAGCAGGATGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
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| CDS TCA 72 bp | TTATCTCGATGCCGTAGGGATCTGCATCGACCAGTGTaGAAACAGGAATATGAAAGGTGTCCCACAGCTTCT | + |
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Preference number: 6 (lower is better) Translates to: LSRCRRDLHRPV*KQEYERCPTAS Trigger: AGAAGCTGTGGGACACCTTTCATATTCCTGTTTTCACACTGGTCGATGCAGATCCCTACGGCATCGAGATAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
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| CDS GCA 72 bp | GGCCTCTTCAGGATGCTGTCCAGCTTCATCTGGTCATaGTTTGTCAGTGGGATCAAACTATCCTTAGGTATA | + |
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Preference number: 6 (lower is better) Translates to: GLFRMLSSFIWS*FVSGIKLSLGI Trigger: TATACCTAAGGATAGTTTGATCCCACTGACAAAGCATGACCAGATGAAGCTGGACAGCATCCTGAAGAGGCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
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| CDS CAA 72 bp | TGGACTCTGGTACCATCTTCCTCCATGTATCTCAAGTaGCCAGCAATCAATCCCTTGGAAGTAGATAGCACG | + |
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Preference number: 6 (lower is better) Translates to: WTLVPSSSMYLK*PAINPLEVDST Trigger: CGTGCTATCTACTTCCAAGGGATTGATTGCTGGCAACTTGAGATACATGGAGGAAGATGGTACCAGAGTCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
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| CDS CAA 72 bp | TGCTGCAGAAGTTGTCGTCCAGGAGCCGCTGAAATGTaGCATCCTTCTCGACTATTAACAGAAACTTCGCAT | + |
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Preference number: 6 (lower is better) Translates to: CCRSCRPGAAEM*HPSRLLTETSH Trigger: ATGCGAAGTTTCTGTTAATAGTCGAGAAGGATGCAACATTTCAGCGGCTCCTGGACGACAACTTCTGCAGCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
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| CDS GCA 72 bp | CTTCAAAAGACATGGACATGGATCCGTACTTATAGATaGACATTATCTCGATGCCGTAGGGATCTGCATCGA | + |
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Preference number: 6 (lower is better) Translates to: LQKTWTWIRTYR*TLSRCRRDLHR Trigger: TCGATGCAGATCCCTACGGCATCGAGATAATGTGCATCTATAAGTACGGATCCATGTCCATGTCTTTTGAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
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| CDS CAA 90 bp | AGGCCGACAGAATCATCAAACATTATGTTTTCCCAGCTCGATCTGTaGTCTATTGTGAAGGCAGGCACTTCATTTCTTGCCAAGCTTTTG | + |
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Preference number: 6 (lower is better) Translates to: RPTESSNIMFSQLDL*SIVKAGTSFLAKLL Trigger: CAAAAGCTTGGCAAGAAATGAAGTGCCTGCCTTCACAATAGACAACAGATCGAGCTGGGAAAACATAATGTTTGATGATTCTGTCGGCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050442.15 |
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| CDS TCA 72 bp | AGACCAAGCCATCTGATTGTTGGGATAGTGAGATTGTaGGCTTCAAAAGACATGGACATGGATCCGTACTTA | + |
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Preference number: 6 (lower is better) Translates to: RPSHLIVGIVRL*ASKDMDMDPYL Trigger: TAAGTACGGATCCATGTCCATGTCTTTTGAAGCTCACAATCTCACTATCCCAACAATCAGATGGCTTGGTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000050442.15 ENSMUST00000109125.8 ENSMUST00000109126.5 |
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| CDS CAA 72 bp | GAATCATCAAACATTATGTTTTCCCAGCTCGATCTGTaGTCTATTGTGAAGGCAGGCACTTCATTTCTTGCC | + |
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Preference number: 6 (lower is better) Translates to: ESSNIMFSQLDL*SIVKAGTSFLA Trigger: GGCAAGAAATGAAGTGCCTGCCTTCACAATAGACAACAGATCGAGCTGGGAAAACATAATGTTTGATGATTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050442.15 |
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| CDS CAA 72 bp | GCAAGGTCAACACAGAATGAGCATTGCTCCTCTTGGTaGCATAAGTGTCGCTCTGTATTAATTTATAAATCA | + |
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Preference number: 6 (lower is better) Translates to: ARSTQNEHCSSW*HKCRSVLIYKS Trigger: TGATTTATAAATTAATACAGAGCGACACTTATGCAACCAAGAGGAGCAATGCTCATTCTGTGTTGACCTTGC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109126.5 |
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| CDS CAA 90 bp | TATGCAGATGCAAGGTCAACACAGAATGAGCATTGCTCCTCTTGGTaGCATAAGTGTCGCTCTGTATTAATTTATAAATCATGGACAATA | + |
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Preference number: 6 (lower is better) Translates to: YADARSTQNEHCSSW*HKCRSVLIYKSWTI Trigger: TATTGTCCATGATTTATAAATTAATACAGAGCGACACTTATGCAACCAAGAGGAGCAATGCTCATTCTGTGTTGACCTTGCATCTGCATA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109126.5 |
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