RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SPINT5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000074593

Ensembl transcript IDs: ENSMUST00000103097.10, ENSMUST00000180193.2

Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR CCA 90 bp CCTCTGCATATGAGCCTGGCGCTGCTCCTTGCATCCTTCGCTTACTGCTTTCCTGCATTGACAGGGACATaGCAAACGTTAGAAGCCACA +
Preference number: 4 (lower is better)
Translates to: PLHMSLALLLASFAYCFPALTGT*QTLEAT
Trigger: TGTGGCTTCTAACGTTTGCCATGTCCCTGTCAATGC...AGGAAAGCAGTAAGCGAAGGATGCAAGGAGCAGCGCCAGGCTCATATGCAGAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103097.10
ENSMUST00000180193.2
CDS-3UTR GCA 90 bp GCATATGAGCCTGGCGCTGCTCCTTGCATCCTTCGCTTACTGCTTTCCTGGGTTGCATATTACTGTTTTTaGTCCAAGGTGCCCGCTTTC +
Preference number: 4 (lower is better)
Translates to: AYEPGAAPCILRLLLSWVAYYCF*SKVPAF
Trigger: GAAAGCGGGCACCTTGGAGCAAAAACAGTAATATGC...AACCCAGGAAAGCAGTAAGCGAAGGATGCAAGGAGCAGCGCCAGGCTCATATGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000180193.2
CDS-3UTR TCA 90 bp TTCCCTCTGCATATGAGCCTGGCGCTGCTCCTTGCATCCTTCGCTTACTGCTTTAGTATCTGTAGAAAGTaGAGCTGCAGAAGCCCTTCT +
Preference number: 4 (lower is better)
Translates to: FPLHMSLALLLASFAYCFSICRK*SCRSPS
Trigger: AGAAGGGCTTCTGCAGCTTCACTTTCTACAGATACT...AAAGCAGTAAGCGAAGGATGCAAGGAGCAGCGCCAGGCTCATATGCAGAGGGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103097.10
ENSMUST00000180193.2
CDS-3UTR CCA 90 bp GTTTCGACTTTATTCCCTCTGCATATGAGCCTGGCGCTGCTCCTTGCATCCTTCGCATTGACAGGGACATaGCAAACGTTAGAAGCCACA +
Preference number: 4 (lower is better)
Translates to: VSTLFPLHMSLALLLASFALTGT*QTLEAT
Trigger: TGTGGCTTCTAACGTTTGCCATGTCCCTGTCAATGC...GAAGGATGCAAGGAGCAGCGCCAGGCTCATATGCAGAGGGAATAAAGTCGAAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103097.10
ENSMUST00000180193.2
CDS-3UTR TCA 90 bp GTTTCGACTTTATTCCCTCTGCATATGAGCCTGGCGCTGCTCCTTGCATCCTTCAGTATCTGTAGAAAGTaGAGCTGCAGAAGCCCTTCT +
Preference number: 4 (lower is better)
Translates to: VSTLFPLHMSLALLLASFSICRK*SCRSPS
Trigger: AGAAGGGCTTCTGCAGCTTCACTTTCTACAGATACT...GAAGGATGCAAGGAGCAGCGCCAGGCTCATATGCAGAGGGAATAAAGTCGAAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103097.10
ENSMUST00000180193.2
CDS-3UTR GCA 90 bp TCTGCATATGAGCCTGGCGCTGCTCCTTGCATCCTTCGCTTACTGCTTTCCTGGTCTTTACCGGTTGGTTaGATATTATTCTTTTCGCTC +
Preference number: 4 (lower is better)
Translates to: SAYEPGAAPCILRLLLSWSLPVG*ILFFSL
Trigger: GAGCGAAAAGAATAATATGCAACCAACCGGTAAAGA...CCAGGAAAGCAGTAAGCGAAGGATGCAAGGAGCAGCGCCAGGCTCATATGCAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103097.10
CDS-3UTR GCA 90 bp TCGACTTTATTCCCTCTGCATATGAGCCTGGCGCTGCTCCTTGCATCCTTCGCTTCTTTACCGGTTGGTTaGATATTACTGTTTTTGCTC +
Preference number: 4 (lower is better)
Translates to: STLFPLHMSLALLLASFASLPVG*ILLFLL
Trigger: GAGCAAAAACAGTAATATGCAACCAACCGGTAAAGA...AGCGAAGGATGCAAGGAGCAGCGCCAGGCTCATATGCAGAGGGAATAAAGTCGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000180193.2
CDS-3UTR CAA 90 bp GTTTCGACTTTATTCCCTCTGCATATGAGCCTGGCGCTGCTCCTTGCATCCTTCCCCGCTTTCGCAGAGTaGACTTCGGACTCCTGCAGG +
Preference number: 5 (lower is better)
Translates to: VSTLFPLHMSLALLLASFPAFAE*TSDSCR
Trigger: CCTGCAGGAGTCCGAAGTCAACTCTGCGAAAGCGGG...GAAGGATGCAAGGAGCAGCGCCAGGCTCATATGCAGAGGGAATAAAGTCGAAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103097.10
ENSMUST00000180193.2
CDS-3UTR CAA 90 bp ACTTTATTCCCTCTGCATATGAGCCTGGCGCTGCTCCTTGCATCCTTCGCTTACCCCGCTTTCGCAGAGTaGACTTCGGACTCCTGCAGG +
Preference number: 5 (lower is better)
Translates to: TLFPLHMSLALLLASFAYPAFAE*TSDSCR
Trigger: CCTGCAGGAGTCCGAAGTCAACTCTGCGAAAGCGGG...GTAAGCGAAGGATGCAAGGAGCAGCGCCAGGCTCATATGCAGAGGGAATAAAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103097.10
ENSMUST00000180193.2
CDS GCA 90 bp GCTGCAGAAGCCCTTCTTTACCGGTTGGTTGCATATTACTGTTTTTaGTCCAAGGTGCCCGCTTTCGCAGAGTTGACTTCGGACTCCTGC +
Preference number: 5 (lower is better)
Translates to: AAEALLYRLVAYYCF*SKVPAFAELTSDSC
Trigger: GCAGGAGTCCGAAGTCAACTCTGCGAAAGCGGGCACCTTGGAGCAAAAACAGTAATATGCAACCAACCGGTAAAGAAGGGCTTCTGCAGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000180193.2
CDS-3UTR CAA 90 bp GAAGTTTCGACTTTATTCCCTCTGCATATGAGCCTGGCGCTGCTCCTTGCATCCTTAAAGTTGTTTCTGTaGCCCCCGCAGCCAGTGAAG +
Preference number: 5 (lower is better)
Translates to: EVSTLFPLHMSLALLLASLKLFL*PPQPVK
Trigger: CTTCACTGGCTGCGGGGGCAACAGAAACAACTTTAA...GGATGCAAGGAGCAGCGCCAGGCTCATATGCAGAGGGAATAAAGTCGAAACTTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000103097.10
ENSMUST00000180193.2
CDS-3UTR CAA 90 bp TCAGAAGTTTCGACTTTATTCCCTCTGCATATGAGCCTGGCGCTGCTCCTTGCATTAAAGTTGTTTCTGTaGCCCCCGCAGCCAGTGAAG +
Preference number: 5 (lower is better)
Translates to: SEVSTLFPLHMSLALLLALKLFL*PPQPVK
Trigger: CTTCACTGGCTGCGGGGGCAACAGAAACAACTTTAA...TGCAAGGAGCAGCGCCAGGCTCATATGCAGAGGGAATAAAGTCGAAACTTCTGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000103097.10
ENSMUST00000180193.2
CDS-3UTR CAA 90 bp GACTTTATTCCCTCTGCATATGAGCCTGGCGCTGCTCCTTGCATCCTTCGCTTATTCTTTACCGGTTGGTaGCATATTATTCTTTTCGCT +
Preference number: 5 (lower is better)
Translates to: DFIPSAYEPGAAPCILRLFFTGW*HIILFA
Trigger: AGCGAAAAGAATAATATGCAACCAACCGGTAAAGAA...TAAGCGAAGGATGCAAGGAGCAGCGCCAGGCTCATATGCAGAGGGAATAAAGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103097.10
CDS TCA 90 bp TTGCATATTACTGTTTTTGCTCCAAGGTGCCCGCTTTCGCAGAGTTaGCTTCGGACTCCTGCAGGATATAGCAAACTACTAGATAGCATT +
Preference number: 5 (lower is better)
Translates to: LHITVFAPRCPLSQS*LRTPAGYSKLLDSI
Trigger: AATGCTATCTAGTAGTTTGCTATATCCTGCAGGAGTCCGAAGTCAACTCTGCGAAAGCGGGCACCTTGGAGCAAAAACAGTAATATGCAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000180193.2
CDS GCA 72 bp GCCCTTCTTTACCGGTTGGTTGCATATTACTGTTTTTaGTCCAAGGTGCCCGCTTTCGCAGAGTTGACTTCG +
Preference number: 6 (lower is better)
Translates to: ALLYRLVAYYCF*SKVPAFAELTS
Trigger: CGAAGTCAACTCTGCGAAAGCGGGCACCTTGGAGCAAAAACAGTAATATGCAACCAACCGGTAAAGAAGGGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000180193.2
CDS CAA 90 bp ATGCAACGGACTTCACAGAGGTATTTAGTTTTAAAGTTGTTTCTGTaGCCCCCGCAGCCAGTGAAGATGAAGGACTCACATAGGGCCGAT +
Preference number: 6 (lower is better)
Translates to: MQRTSQRYLVLKLFL*PPQPVKMKDSHRAD
Trigger: ATCGGCCCTATGTGAGTCCTTCATCTTCACTGGCTGCGGGGGCAACAGAAACAACTTTAAAACTAAATACCTCTGTGAAGTCCGTTGCAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000103097.10
ENSMUST00000180193.2
CDS CAA 90 bp GTAGTATCTGTAGAAAGTGAAGCTGCAGAAGCCCTTCTTTACCGGTaGGTTGCATATTACTGTTTTTGCTCCAAGGTGCCCGCTTTCGCA +
Preference number: 6 (lower is better)
Translates to: VVSVESEAAEALLYR*VAYYCFCSKVPAFA
Trigger: TGCGAAAGCGGGCACCTTGGAGCAAAAACAGTAATATGCAACCAACCGGTAAAGAAGGGCTTCTGCAGCTTCACTTTCTACAGATACTAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000180193.2
CDS CAA 72 bp AAAGTGAAGCTGCAGAAGCCCTTCTTTACCGGTTGGTaGCATATTACTGTTTTTGCTCCAAGGTGCCCGCTT +
Preference number: 6 (lower is better)
Translates to: KVKLQKPFFTGW*HITVFAPRCPL
Trigger: AAGCGGGCACCTTGGAGCAAAAACAGTAATATGCAACCAACCGGTAAAGAAGGGCTTCTGCAGCTTCACTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000180193.2
CDS CAA 72 bp GTAGAAAGTGAAGCTGCAGAAGCCCTTCTTTACCGGTaGGTTGCATATTACTGTTTTTGCTCCAAGGTGCCC +
Preference number: 6 (lower is better)
Translates to: VESEAAEALLYR*VAYYCFCSKVP
Trigger: GGGCACCTTGGAGCAAAAACAGTAATATGCAACCAACCGGTAAAGAAGGGCTTCTGCAGCTTCACTTTCTAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000180193.2