Pregenerated sensors for SPINT4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000017310Ensembl transcript IDs: ENSMUST00000017454.8
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 72 bp | CAGATGGCCCATCCGAGAACCTCCACGAACACACCGTaGTTTTCAGTTCAGGTTCAGATTCAGGTTCGGATT | + |
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Preference number: 3 (lower is better) Translates to: QMAHPRTSTNTP*FSVQVQIQVRI Trigger: AATCCGAACCTGAATCTGAACCTGAACTGAAAAGCACGGTGTGTTCGTGGAGGTTCTCGGATGGGCCATCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017454.8 |
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| CDS-3UTR TCA 90 bp | TTCTTGAATCTTTATTTCAGATGGCCCATCCGAGAACCTCCACGAACACACCGTTGCCATTGCAGCCAGTaGACAGAAAAATCTGACACT | + |
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Preference number: 4 (lower is better) Translates to: FLNLYFRWPIREPPRTHRCHCSQ*TEKSDT Trigger: AGTGTCAGATTTTTCTGTTCACTGGCTGCAATGGCA...ACGGTGTGTTCGTGGAGGTTCTCGGATGGGCCATCTGAAATAAAGATTCAAGAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017454.8 |
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| CDS-3UTR GCA 90 bp | ACGAACACACCGTGCTTTTCAGTTCAGGTTCAGATTCAGGTTCGGATTTTCTTTGTACTTCATAGCAGCTaGCAGGCTCCACATCCAACA | + |
|
Preference number: 4 (lower is better) Translates to: TNTPCFSVQVQIQVRIFFVLHSS*QAPHPT Trigger: TGTTGGATGTGGAGCCTGGCAGCTGCTATGAAGTAC...AAAGAAAATCCGAACCTGAATCTGAACCTGAACTGAAAAGCACGGTGTGTTCGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017454.8 |
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| CDS-3UTR TCA 90 bp | CACCGTGCTTTTCAGTTCAGGTTCAGATTCAGGTTCGGATTTTCTTTGCAGCTGGTGAACAGAAAAATCTaGCACTGTTTGGCAGTTTGG | + |
|
Preference number: 4 (lower is better) Translates to: HRAFQFRFRFRFGFSLQLVNRKI*HCLAVW Trigger: CCAAACTGCCAAACAGTGTCAGATTTTTCTGTTCAC...CAGCTGCAAAGAAAATCCGAACCTGAATCTGAACCTGAACTGAAAAGCACGGTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000017454.8 |
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| CDS-3UTR CCA 90 bp | AATCTTTATTTCAGATGGCCCATCCGAGAACCTCCACGAACACACCGTGCTTTTAAATCTGACACTGTTTaGCAGTTTGGTTGTAGAAAA | + |
|
Preference number: 4 (lower is better) Translates to: NLYFRWPIREPPRTHRAFKSDTV*QFGCRK Trigger: TTTTCTACAACCAAACTGCCAAACAGTGTCAGATTT...AAAAGCACGGTGTGTTCGTGGAGGTTCTCGGATGGGCCATCTGAAATAAAGATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017454.8 |
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| CDS-3UTR CAA 90 bp | CACACCGTGCTTTTCAGTTCAGGTTCAGATTCAGGTTCGGATTTTCTTTGCAGCATGCCTGGCCAGGGGTaGCCTTCTGGACTCTCTCCG | + |
|
Preference number: 5 (lower is better) Translates to: HTVLFSSGSDSGSDFLCSMPGQG*PSGLSP Trigger: CGGAGAGAGTCCAGAAGGCAACCCCTGGCCAGGCAT...GCTGCAAAGAAAATCCGAACCTGAATCTGAACCTGAACTGAAAAGCACGGTGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000017454.8 |
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| CDS-3UTR CAA 90 bp | AATCTTTATTTCAGATGGCCCATCCGAGAACCTCCACGAACACACCGTGCTTTTTTGAAGTTATTAAGGTaGCCATTGCAGCCAGTGAAC | + |
|
Preference number: 5 (lower is better) Translates to: NLYFRWPIREPPRTHRAFLKLLR*PLQPVN Trigger: GTTCACTGGCTGCAATGGCAACCTTAATAACTTCAA...AAAAGCACGGTGTGTTCGTGGAGGTTCTCGGATGGGCCATCTGAAATAAAGATT 44% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000017454.8 |
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| CDS TCA 90 bp | TTCCTCTTATCGCCGCTCGGCAGCGGAGGGTTTTTGTATGTTTCGTaGCAAGTTACATCACAGTCTATTTTCAGCTTGAAGTTATTAAGG | + |
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Preference number: 5 (lower is better) Translates to: FLLSPLGSGGFLYVS*QVTSQSIFSLKLLR Trigger: CCTTAATAACTTCAAGCTGAAAATAGACTGTGATGTAACTTGTCACGAAACATACAAAAACCCTCCGCTGCCGAGCGGCGATAAGAGGAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017454.8 |
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| CDS-3UTR CAA 90 bp | TTCTTGAATCTTTATTTCAGATGGCCCATCCGAGAACCTCCACGAACACACCGTTTATTAAGGTTGCCATaGCAGCCAGTGAACAGAAAA | + |
|
Preference number: 5 (lower is better) Translates to: FLNLYFRWPIREPPRTHRLLRLP*QPVNRK Trigger: TTTTCTGTTCACTGGCTGCAATGGCAACCTTAATAA...ACGGTGTGTTCGTGGAGGTTCTCGGATGGGCCATCTGAAATAAAGATTCAAGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017454.8 |
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| CDS-3UTR CAA 90 bp | AACAGGAAAATAGTGAATAGAAGTGTCAAAGATTATGGACACGATCCAAAAACCCAGTCTATTTTCAGCTaGAAGTTATTAAGGTTGCCA | + |
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Preference number: 5 (lower is better) Translates to: NRKIVNRSVKDYGHDPKTQSIFS*KLLRLP Trigger: TGGCAACCTTAATAACTTCAAGCTGAAAATAGACTG...GGTTTTTGGATCGTGTCCATAATCTTTGACACTTCTATTCACTATTTTCCTGTT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000017454.8 |
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