Pregenerated sensors for SPINT3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000074596Ensembl transcript IDs: ENSMUST00000099097.4
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | AACCCTTCAGGGGTCCCCAGGGAGCTTGACTCCATGGAGGGCTGGCTTGGCTTGGGTGTTGGTGCAAACTaGCTGGCACTGACTTCTGCT | + |
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Preference number: 4 (lower is better) Translates to: NPSGVPRELDSMEGWLGLGVGAN*LALTSA Trigger: AGCAGAAGTCAGTGCCAGGCAGTTTGCACCAACACC...CAAGCCAAGCCAGCCCTCCATGGAGTCAAGCTCCCTGGGGACCCCTGAAGGGTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099097.4 |
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| CDS-3UTR GCA 90 bp | AACCCTTCAGGGGTCCCCAGGGAGCTTGACTCCATGGAGGGCTGGCTTGGCTTGGGAAGTTGTTCTCGTTaGCTTTGCAGCCTCCATAGC | + |
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Preference number: 4 (lower is better) Translates to: NPSGVPRELDSMEGWLGLGSCSR*LCSLHS Trigger: GCTATGGAGGCTGCAAAGGCAACGAGAACAACTTCC...CAAGCCAAGCCAGCCCTCCATGGAGTCAAGCTCCCTGGGGACCCCTGAAGGGTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099097.4 |
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| CDS-3UTR TCA 90 bp | CCTTCAGGGGTCCCCAGGGAGCTTGACTCCATGGAGGGCTGGCTTGGCTTGACAGCTCTTGGCAGAAGATaGGGATCAGGAACAAGAAGA | + |
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Preference number: 4 (lower is better) Translates to: PSGVPRELDSMEGWLGLTALGRR*GSGTRR Trigger: TCTTCTTGTTCCTGATCCTCATCTTCTGCCAAGAGC...TGTCAAGCCAAGCCAGCCCTCCATGGAGTCAAGCTCCCTGGGGACCCCTGAAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099097.4 |
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| CDS-3UTR CCA 90 bp | AACCCTTCAGGGGTCCCCAGGGAGCTTGACTCCATGGAGGGCTGGCTTGGCTTGCCTGGGCACATTATTTaGTTCTGCGCAAAGCTCTTG | + |
|
Preference number: 4 (lower is better) Translates to: NPSGVPRELDSMEGWLGLPGHII*FCAKLL Trigger: CAAGAGCTTTGCGCAGAACCAAATAATGTGCCCAGG...CAAGCCAAGCCAGCCCTCCATGGAGTCAAGCTCCCTGGGGACCCCTGAAGGGTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099097.4 |
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| CDS-3UTR CCA 90 bp | CCTTCAGGGGTCCCCAGGGAGCTTGACTCCATGGAGGGCTGGCTTGGCTTGACAGCGGTAAGGACTTCCTaGGCACATTATTTGGTTCTG | + |
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Preference number: 4 (lower is better) Translates to: PSGVPRELDSMEGWLGLTAVRTS*AHYLVL Trigger: CAGAACCAAATAATGTGCCCAGGAAGTCCTTACCGC...TGTCAAGCCAAGCCAGCCCTCCATGGAGTCAAGCTCCCTGGGGACCCCTGAAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099097.4 |
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| CDS-3UTR GCA 90 bp | AACCCTTCAGGGGTCCCCAGGGAGCTTGACTCCATGGAGGGCTGGCTTGGCTTGGGAACCACTCACACTTaGCAGTTTTGGAGTTATAGT | + |
|
Preference number: 4 (lower is better) Translates to: NPSGVPRELDSMEGWLGLGTTHT*QFWSYS Trigger: ACTATAACTCCAAAACTGGCAAGTGTGAGTGGTTCC...CAAGCCAAGCCAGCCCTCCATGGAGTCAAGCTCCCTGGGGACCCCTGAAGGGTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000099097.4 |
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| CDS-3UTR CCA 90 bp | AGGGAAATGCACTTATTATTATTATTATTCACAAACAAAACCCTTCAGGGGTCCTCTGCGCAAAGCTCTTaGCAGAAGATGAGGATCAGG | + |
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Preference number: 4 (lower is better) Translates to: REMHLLLLLFTNKTLQGSSAQSS*QKMRIR Trigger: CCTGATCCTCATCTTCTGCCAAGAGCTTTGCGCAGA...GGACCCCTGAAGGGTTTTGTTTGTGAATAATAATAATAATAAGTGCATTTCCCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099097.4 |
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| CDS-3UTR GCA 90 bp | GGAAATGCACTTATTATTATTATTATTCACAAACAAAACCCTTCAGGGGTCCCCCACATTATTTGGTTCTaGGCAAAGCTCTTGGCAGAA | + |
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Preference number: 4 (lower is better) Translates to: GNALIIIIIHKQNPSGVPHIIWF*AKLLAE Trigger: TTCTGCCAAGAGCTTTGCGCAGAACCAAATAATGTG...GGGGACCCCTGAAGGGTTTTGTTTGTGAATAATAATAATAATAAGTGCATTTCC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000099097.4 |
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| CDS-3UTR CCA 90 bp | AGGGAAATGCACTTATTATTATTATTATTCACAAACAAAACCCTTCAGGGGTCCCACACTTGCCAGTTTTaGAGTTATAGTACCATCTCA | + |
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Preference number: 4 (lower is better) Translates to: REMHLLLLLFTNKTLQGSHTCQF*SYSTIS Trigger: TGAGATGGTACTATAACTCCAAAACTGGCAAGTGTG...GGACCCCTGAAGGGTTTTGTTTGTGAATAATAATAATAATAAGTGCATTTCCCT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000099097.4 |
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| CDS GCA 72 bp | CCTGGCACTGACTTCTGCTCGGGAAGTTGTTCTCGTTaGCTTTGCAGCCTCCATAGCGGAACCACTCACACT | + |
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Preference number: 6 (lower is better) Translates to: PGTDFCSGSCSR*LCSLHSGTTHT Trigger: AGTGTGAGTGGTTCCGCTATGGAGGCTGCAAAGGCAACGAGAACAACTTCCCGAGCAGAAGTCAGTGCCAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099097.4 |
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| CDS GCA 72 bp | ACTGACTTCTGCTCGGGAAGTTGTTCTCGTTGCCTTTaGAGCCTCCATAGCGGAACCACTCACACTTGCCAG | + |
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Preference number: 6 (lower is better) Translates to: TDFCSGSCSRCL*SLHSGTTHTCQ Trigger: CTGGCAAGTGTGAGTGGTTCCGCTATGGAGGCTGCAAAGGCAACGAGAACAACTTCCCGAGCAGAAGTCAGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099097.4 |
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| CDS CCA 72 bp | AGCCTCCATAGCGGAACCACTCACACTTGCCAGTTTTaGAGTTATAGTACCATCTCACAAACACAGCTCGGC | + |
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Preference number: 6 (lower is better) Translates to: SLHSGTTHTCQF*SYSTISQTQLG Trigger: GCCGAGCTGTGTTTGTGAGATGGTACTATAACTCCAAAACTGGCAAGTGTGAGTGGTTCCGCTATGGAGGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099097.4 |
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