Pregenerated sensors for SPINT2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000074227Ensembl transcript IDs: ENSMUST00000098604.12, ENSMUST00000108236.5, ENSMUST00000207601.2
Found 76 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TCCTTGTCATCCGCAGTGCTCCAAACAGTGCGCAGCGCACGCTCCTaGTTTCTGCGAACCACACGGATGAGGCAGACCATAGAGGTTCCC | + |
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Preference number: 1 (lower is better) Translates to: SLSSAVLQTVRSARS*FLRTTRMRQTIEVP Trigger: GGGAACCTCTATGGTCTGCCTCATCCGTGTGGTTCGCAGAAAGCAGGAGCGTGCGCTGCGCACTGTTTGGAGCACTGCGGATGACAAGGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207601.2 |
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| 3UTR GCA 90 bp | TCTGAGCACTGGGGCCTCTACAAGACACAGGTGTTCTTCACCAGCTaGTCCTTGTCATCCGCAGTGCTCCAAACAGTGCGCAGCGCACGC | + |
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Preference number: 1 (lower is better) Translates to: SEHWGLYKTQVFFTS*SLSSAVLQTVRSAR Trigger: GCGTGCGCTGCGCACTGTTTGGAGCACTGCGGATGACAAGGAGCAGCTGGTGAAGAACACCTGTGTCTTGTAGAGGCCCCAGTGCTCAGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000207601.2 |
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| 3UTR GCA 90 bp | ACAAGACACAGGTGTTCTTCACCAGCTGCTCCTTGTCATCCGCAGTaGTCCAAACAGTGCGCAGCGCACGCTCCTGCTTTCTGCGAACCA | + |
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Preference number: 1 (lower is better) Translates to: TRHRCSSPAAPCHPQ*SKQCAAHAPAFCEP Trigger: TGGTTCGCAGAAAGCAGGAGCGTGCGCTGCGCACTGTTTGGAGCACTGCGGATGACAAGGAGCAGCTGGTGAAGAACACCTGTGTCTTGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207601.2 |
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| 3UTR GCA 90 bp | GATACAGGAATTCTTTTCAGTGTCATAGTACCAGCGAGGGAAGGCTaGGCGGCACGGCCCAGTGACGGCCTTCGGGACACAGTATTCTTC | + |
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Preference number: 1 (lower is better) Translates to: DTGILFSVIVPAREG*AARPSDGLRDTVFF Trigger: GAAGAATACTGTGTCCCGAAGGCCGTCACTGGGCCGTGCCGCGCAGCCTTCCCTCGCTGGTACTATGACACTGAAAAGAATTCCTGTATC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000207601.2 |
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| 3UTR GCA 90 bp | GGTCAGGAAAGGATGCATCTGCTTACCAGAGCAGTGCTGCATGCATaGTTCCTGGGAGAGGTAACTGTTCTTGTTGCCTCTGCACCCGCC | + |
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Preference number: 1 (lower is better) Translates to: GQERMHLLTRAVLHA*FLGEVTVLVASAPA Trigger: GGCGGGTGCAGAGGCAACAAGAACAGTTACCTCTCCCAGGAAGCATGCATGCAGCACTGCTCTGGTAAGCAGATGCATCCTTTCCTGACC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207601.2 |
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| 3UTR GCA 90 bp | CCGGGGTCAGGAAAGGATGCATCTGCTTACCAGAGCAGTGCTGCATaGATGCTTCCTGGGAGAGGTAACTGTTCTTGTTGCCTCTGCACC | + |
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Preference number: 1 (lower is better) Translates to: PGSGKDASAYQSSAA*MLPGRGNCSCCLCT Trigger: GGTGCAGAGGCAACAAGAACAGTTACCTCTCCCAGGAAGCATGCATGCAGCACTGCTCTGGTAAGCAGATGCATCCTTTCCTGACCCCGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000207601.2 |
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| 3UTR TCA 90 bp | GCAGTTGCTCTCTTTTTAAACAGCACAAGTTGTCACTCCCGGTTCTaGGCACTGGGGCCTCTACAAGACACAGGTGTTCTTCACCAGCTG | + |
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Preference number: 1 (lower is better) Translates to: AVALFLNSTSCHSRF*ALGPLQDTGVLHQL Trigger: CAGCTGGTGAAGAACACCTGTGTCTTGTAGAGGCCCCAGTGCTCAGAACCGGGAGTGACAACTTGTGCTGTTTAAAAAGAGAGCAACTGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000207601.2 |
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| 3UTR GCA 90 bp | TGGGAAACAAAGACCAAACCCCTAATGATCTCAGACGCAAGCAGTTaGTCTCTTTTTAAACAGCACAAGTTGTCACTCCCGGTTCTGAGC | + |
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Preference number: 1 (lower is better) Translates to: WETKTKPLMISDASS*SLFKQHKLSLPVLS Trigger: GCTCAGAACCGGGAGTGACAACTTGTGCTGTTTAAAAAGAGAGCAACTGCTTGCGTCTGAGATCATTAGGGGTTTGGTCTTTGTTTCCCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000098604.12 ENSMUST00000108236.5 ENSMUST00000207601.2 |
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| 3UTR CAA 90 bp | CACTGGGGCCTCTACAAGACACAGGTGTTCTTCACCAGCTGCTCCTaGTCATCCGCAGTGCTCCAAACAGTGCGCAGCGCACGCTCCTGC | + |
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Preference number: 2 (lower is better) Translates to: HWGLYKTQVFFTSCS*SSAVLQTVRSARSC Trigger: GCAGGAGCGTGCGCTGCGCACTGTTTGGAGCACTGCGGATGACAAGGAGCAGCTGGTGAAGAACACCTGTGTCTTGTAGAGGCCCCAGTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000207601.2 |
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| 3UTR-3UTR GCA 90 bp | AGCCCAACAGCACTGGGAAACAAAGACCAAACCCCTAATGATCTCAGACGCAAGCCAGCGAGGGAAGGCTaGGCGGCACGGCCCAGTGAC | + |
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Preference number: 2 (lower is better) Translates to: SPTALGNKDQTPNDLRRKPAREG*AARPSD Trigger: GTCACTGGGCCGTGCCGCGCAGCCTTCCCTCGCTGG...CTTGCGTCTGAGATCATTAGGGGTTTGGTCTTTGTTTCCCAGTGCTGTTGGGCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000207601.2 |
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| 3UTR-3UTR GCA 90 bp | GTTCCCAGGAGGAGGATCAGAACCATGAGGAACAGCCCCACCAGGATCACCGCTAGGTCCTCAGCACTCTaGTTTCTGGGAACCAGGCTC | + |
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Preference number: 2 (lower is better) Translates to: VPRRRIRTMRNSPTRITARSSAL*FLGTRL Trigger: GAGCCTGGTTCCCAGAAAGCAGAGTGCTGAGGACCT...AGCGGTGATCCTGGTGGGGCTGTTCCTCATGGTTCTGATCCTCCTCCTGGGAAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000207601.2 |
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| 3UTR-3UTR CCA 90 bp | CTAAGCAGCCCAACAGCACTGGGAAACAAAGACCAAACCCCTAATGATCTCAGAAGAGGAGACAGGCGATaGGGAAGGGCAGGGGAGCTG | + |
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Preference number: 2 (lower is better) Translates to: LSSPTALGNKDQTPNDLRRGDRR*GRAGEL Trigger: CAGCTCCCCTGCCCTTCCCCATCGCCTGTCTCCTCT...TCTGAGATCATTAGGGGTTTGGTCTTTGTTTCCCAGTGCTGTTGGGCTGCTTAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000098604.12 ENSMUST00000108236.5 ENSMUST00000207601.2 |
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| 3UTR-3UTR CCA 90 bp | ACAAGACACAGGTGTTCTTCACCAGCTGCTCCTTGTCATCCGCAGTGCTCCAAACAGCACTCTGCTTTCTaGGAACCAGGCTCCTGCAGC | + |
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Preference number: 2 (lower is better) Translates to: TRHRCSSPAAPCHPQCSKQHSAF*EPGSCS Trigger: GCTGCAGGAGCCTGGTTCCCAGAAAGCAGAGTGCTG...TTTGGAGCACTGCGGATGACAAGGAGCAGCTGGTGAAGAACACCTGTGTCTTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207601.2 |
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| 3UTR-3UTR GCA 90 bp | AGCCCAACAGCACTGGGAAACAAAGACCAAACCCCTAATGATCTCAGACGCAAGCAGAGCAGTGCTGCATaGATGCTTCCTGGGAGAGGT | + |
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Preference number: 2 (lower is better) Translates to: SPTALGNKDQTPNDLRRKQSSAA*MLPGRG Trigger: ACCTCTCCCAGGAAGCATGCATGCAGCACTGCTCTG...CTTGCGTCTGAGATCATTAGGGGTTTGGTCTTTGTTTCCCAGTGCTGTTGGGCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000207601.2 |
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| 3UTR-3UTR GCA 90 bp | AAGACACAGGTGTTCTTCACCAGCTGCTCCTTGTCATCCGCAGTGCTCCAAACAGGGGTCAGGAAAGGATaGATCTGCTTACCAGAGCAG | + |
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Preference number: 2 (lower is better) Translates to: KTQVFFTSCSLSSAVLQTGVRKG*ICLPEQ Trigger: CTGCTCTGGTAAGCAGATGCATCCTTTCCTGACCCC...TGTTTGGAGCACTGCGGATGACAAGGAGCAGCTGGTGAAGAACACCTGTGTCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000207601.2 |
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| 3UTR-3UTR GCA 90 bp | GGTCAAGAGGAGGCCCTAAGCAGCCCAACAGCACTGGGAAACAAAGACCAAACCTCAGACGCAAGCAGTTaGTCTCTTTTTAAACAGCAC | + |
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Preference number: 2 (lower is better) Translates to: GQEEALSSPTALGNKDQTSDASS*SLFKQH Trigger: GTGCTGTTTAAAAAGAGAGCAACTGCTTGCGTCTGA...GGTTTGGTCTTTGTTTCCCAGTGCTGTTGGGCTGCTTAGGGCCTCCTCTTGACC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000098604.12 ENSMUST00000108236.5 ENSMUST00000207601.2 |
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| 3UTR-3UTR TCA 90 bp | TCAGACGCAAGCAGTTGCTCTCTTTTTAAACAGCACAAGTTGTCACTCCCGGTTAGTATTCTTCATAGTTaGAGATCTCAGCAGACAGGT | + |
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Preference number: 2 (lower is better) Translates to: SDASSCSLFKQHKLSLPVSILHS*RSQQTG Trigger: ACCTGTCTGCTGAGATCTTCAACTATGAAGAATACT...AACCGGGAGTGACAACTTGTGCTGTTTAAAAAGAGAGCAACTGCTTGCGTCTGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000207601.2 |
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| 3UTR-3UTR GCA 90 bp | AAAACCCACATAAATCAAACAAACAGTGACCGCTACAAGAATGGGGCTCCTTCCTCAGACGCAAGCAGTTaGTCTCTTTTTAAACAGCAC | + |
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Preference number: 2 (lower is better) Translates to: KTHINQTNSDRYKNGAPSSDASS*SLFKQH Trigger: GTGCTGTTTAAAAAGAGAGCAACTGCTTGCGTCTGA...GGAAGGAGCCCCATTCTTGTAGCGGTCACTGTTTGTTTGATTTATGTGGGTTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000098604.12 ENSMUST00000108236.5 ENSMUST00000207601.2 |
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| 3UTR-3UTR GCA 90 bp | GTAGATGAAGCTGATACAGGAATTCTTTTCAGTGTCATAGTACCAGCGAGGGAATCAGACGCAAGCAGTTaGTCTCTTTTTAAACAGCAC | + |
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Preference number: 2 (lower is better) Translates to: VDEADTGILFSVIVPARESDASS*SLFKQH Trigger: GTGCTGTTTAAAAAGAGAGCAACTGCTTGCGTCTGA...TTCCCTCGCTGGTACTATGACACTGAAAAGAATTCCTGTATCAGCTTCATCTAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000207601.2 |
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| 3UTR GCA 72 bp | CCAGCTGCTCCTTGTCATCCGCAGTGCTCCAAACAGTaGGCAGCGCACGCTCCTGCTTTCTGCGAACCACAC | + |
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Preference number: 3 (lower is better) Translates to: PAAPCHPQCSKQ*AAHAPAFCEPH Trigger: GTGTGGTTCGCAGAAAGCAGGAGCGTGCGCTGCGCACTGTTTGGAGCACTGCGGATGACAAGGAGCAGCTGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207601.2 |
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| 3UTR GCA 72 bp | ATTCTTTTCAGTGTCATAGTACCAGCGAGGGAAGGCTaGGCGGCACGGCCCAGTGACGGCCTTCGGGACACA | + |
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Preference number: 3 (lower is better) Translates to: ILFSVIVPAREG*AARPSDGLRDT Trigger: TGTGTCCCGAAGGCCGTCACTGGGCCGTGCCGCGCAGCCTTCCCTCGCTGGTACTATGACACTGAAAAGAAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000207601.2 |
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| 3UTR GCA 72 bp | AGGTGTTCTTCACCAGCTGCTCCTTGTCATCCGCAGTaGTCCAAACAGTGCGCAGCGCACGCTCCTGCTTTC | + |
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Preference number: 3 (lower is better) Translates to: RCSSPAAPCHPQ*SKQCAAHAPAF Trigger: GAAAGCAGGAGCGTGCGCTGCGCACTGTTTGGAGCACTGCGGATGACAAGGAGCAGCTGGTGAAGAACACCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207601.2 |
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| 3UTR GCA 72 bp | ACCGCTTTTAGGCCCGGGGTCAGGAAAGGATGCATCTaGTTACCAGAGCAGTGCTGCATGCATGCTTCCTGG | + |
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Preference number: 3 (lower is better) Translates to: TAFRPGVRKGCI*LPEQCCMHASW Trigger: CCAGGAAGCATGCATGCAGCACTGCTCTGGTAAGCAGATGCATCCTTTCCTGACCCCGGGCCTAAAAGCGGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000207601.2 |
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| 3UTR GCA 72 bp | TGGGGCCTCTACAAGACACAGGTGTTCTTCACCAGCTaGTCCTTGTCATCCGCAGTGCTCCAAACAGTGCGC | + |
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Preference number: 3 (lower is better) Translates to: WGLYKTQVFFTS*SLSSAVLQTVR Trigger: GCGCACTGTTTGGAGCACTGCGGATGACAAGGAGCAGCTGGTGAAGAACACCTGTGTCTTGTAGAGGCCCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000207601.2 |
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| 3UTR GCA 72 bp | AGGATCACCGCTTTTAGGCCCGGGGTCAGGAAAGGATaGATCTGCTTACCAGAGCAGTGCTGCATGCATGCT | + |
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Preference number: 3 (lower is better) Translates to: RITAFRPGVRKG*ICLPEQCCMHA Trigger: AGCATGCATGCAGCACTGCTCTGGTAAGCAGATGCATCCTTTCCTGACCCCGGGCCTAAAAGCGGTGATCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000207601.2 |
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| 3UTR GCA 72 bp | AAGACCAAACCCCTAATGATCTCAGACGCAAGCAGTTaGTCTCTTTTTAAACAGCACAAGTTGTCACTCCCG | + |
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Preference number: 3 (lower is better) Translates to: KTKPLMISDASS*SLFKQHKLSLP Trigger: CGGGAGTGACAACTTGTGCTGTTTAAAAAGAGAGCAACTGCTTGCGTCTGAGATCATTAGGGGTTTGGTCTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000098604.12 ENSMUST00000108236.5 ENSMUST00000207601.2 |
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| CDS-3UTR GCA 90 bp | GGTCAAGAGGAGGCCCTAAGCAGCCCAACAGCACTGGGAAACAAAGACCAAACCCCAGCGAGGGAAGGCTaGGCGGCACGGCCCAGTGAC | + |
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Preference number: 4 (lower is better) Translates to: GQEEALSSPTALGNKDQTPAREG*AARPSD Trigger: GTCACTGGGCCGTGCCGCGCAGCCTTCCCTCGCTGG...GGTTTGGTCTTTGTTTCCCAGTGCTGTTGGGCTGCTTAGGGCCTCCTCTTGACC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098604.12 ENSMUST00000108236.5 |
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| CDS-3UTR CCA 90 bp | AGCAGCCCAACAGCACTGGGAAACAAAGACCAAACCCCTAATGATCTCAGACGCTCTCGGCTGGCCACCTaGGCCCCGGAGAGGAGCAGC | + |
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Preference number: 4 (lower is better) Translates to: SSPTALGNKDQTPNDLRRSRLAT*APERSS Trigger: GCTGCTCCTCTCCGGGGCCCAGGTGGCCAGCCGAGA...GCGTCTGAGATCATTAGGGGTTTGGTCTTTGTTTCCCAGTGCTGTTGGGCTGCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000098604.12 ENSMUST00000108236.5 ENSMUST00000207601.2 |
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| CDS-3UTR CCA 90 bp | AGCCCAACAGCACTGGGAAACAAAGACCAAACCCCTAATGATCTCAGACGCAAGTCTCGGCTGGCCACCTaGGCCCCGGAGAGGAGCAGC | + |
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Preference number: 4 (lower is better) Translates to: SPTALGNKDQTPNDLRRKSRLAT*APERSS Trigger: GCTGCTCCTCTCCGGGGCCCAGGTGGCCAGCCGAGA...CTTGCGTCTGAGATCATTAGGGGTTTGGTCTTTGTTTCCCAGTGCTGTTGGGCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000098604.12 ENSMUST00000108236.5 ENSMUST00000207601.2 |
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| CDS-3UTR CCA 90 bp | GACGCAAGCAGTTGCTCTCTTTTTAAACAGCACAAGTTGTCACTCCCGGTTCTGTCTCGGCTGGCCACCTaGGCCCCGGAGAGGAGCAGC | + |
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Preference number: 4 (lower is better) Translates to: DASSCSLFKQHKLSLPVLSRLAT*APERSS Trigger: GCTGCTCCTCTCCGGGGCCCAGGTGGCCAGCCGAGA...CAGAACCGGGAGTGACAACTTGTGCTGTTTAAAAAGAGAGCAACTGCTTGCGTC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000098604.12 ENSMUST00000108236.5 ENSMUST00000207601.2 |
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| CDS-3UTR GCA 90 bp | AAAACCCACATAAATCAAACAAACAGTGACCGCTACAAGAATGGGGCTCCTTCCCCAGCGAGGGAAGGCTaGGCGGCACGGCCCAGTGAC | + |
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Preference number: 4 (lower is better) Translates to: KTHINQTNSDRYKNGAPSPAREG*AARPSD Trigger: GTCACTGGGCCGTGCCGCGCAGCCTTCCCTCGCTGG...GGAAGGAGCCCCATTCTTGTAGCGGTCACTGTTTGTTTGATTTATGTGGGTTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000098604.12 ENSMUST00000108236.5 |
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| 3UTR CAA 72 bp | CTCTACAAGACACAGGTGTTCTTCACCAGCTGCTCCTaGTCATCCGCAGTGCTCCAAACAGTGCGCAGCGCA | + |
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Preference number: 4 (lower is better) Translates to: LYKTQVFFTSCS*SSAVLQTVRSA Trigger: TGCGCTGCGCACTGTTTGGAGCACTGCGGATGACAAGGAGCAGCTGGTGAAGAACACCTGTGTCTTGTAGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207601.2 |
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| CDS-3UTR CCA 90 bp | AGCAGCCCAACAGCACTGGGAAACAAAGACCAAACCCCTAATGATCTCAGACGCCTCCATTCCTGTTCCTaGCCATGTCATCAGTGGTGT | + |
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Preference number: 4 (lower is better) Translates to: SSPTALGNKDQTPNDLRRLHSCS*PCHQWC Trigger: ACACCACTGATGACATGGCCAGGAACAGGAATGGAG...GCGTCTGAGATCATTAGGGGTTTGGTCTTTGTTTCCCAGTGCTGTTGGGCTGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000098604.12 ENSMUST00000108236.5 ENSMUST00000207601.2 |
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| CDS-3UTR CCA 90 bp | GCCCAACAGCACTGGGAAACAAAGACCAAACCCCTAATGATCTCAGACGCAAGCCTCCATTCCTGTTCCTaGCCATGTCATCAGTGGTGT | + |
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Preference number: 4 (lower is better) Translates to: AQQHWETKTKPLMISDASLHSCS*PCHQWC Trigger: ACACCACTGATGACATGGCCAGGAACAGGAATGGAG...GCTTGCGTCTGAGATCATTAGGGGTTTGGTCTTTGTTTCCCAGTGCTGTTGGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000098604.12 ENSMUST00000108236.5 ENSMUST00000207601.2 |
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| CDS-3UTR CCA 90 bp | GAGGCCCTAAGCAGCCCAACAGCACTGGGAAACAAAGACCAAACCCCTAATGATCAGCACTCTGCTTTCTaGGAACACTCAGGACAGAAG | + |
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Preference number: 4 (lower is better) Translates to: EALSSPTALGNKDQTPNDQHSAF*EHSGQK Trigger: CTTCTGTCCTGAGTGTTCCCAGAAAGCAGAGTGCTG...ATCATTAGGGGTTTGGTCTTTGTTTCCCAGTGCTGTTGGGCTGCTTAGGGCCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098604.12 ENSMUST00000108236.5 |
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| 3UTR CAA 72 bp | GACGCAAGCAGTTGCTCTCTTTTTAAACAGCACAAGTaGTCACTCCCGGTTCTGAGCACTGGGGCCTCTACA | + |
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Preference number: 4 (lower is better) Translates to: DASSCSLFKQHK*SLPVLSTGAST Trigger: TGTAGAGGCCCCAGTGCTCAGAACCGGGAGTGACAACTTGTGCTGTTTAAAAAGAGAGCAACTGCTTGCGTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000207601.2 |
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| CDS-3UTR GCA 90 bp | AGCCCAACAGCACTGGGAAACAAAGACCAAACCCCTAATGATCTCAGACGCAAGAGGAAAGGATGCATCTaGTTACCAGAGCAGTGCTGC | + |
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Preference number: 4 (lower is better) Translates to: SPTALGNKDQTPNDLRRKRKGCI*LPEQCC Trigger: GCAGCACTGCTCTGGTAAGCAGATGCATCCTTTCCT...CTTGCGTCTGAGATCATTAGGGGTTTGGTCTTTGTTTCCCAGTGCTGTTGGGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098604.12 ENSMUST00000108236.5 |
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| CDS-3UTR GCA 90 bp | CTAAGCAGCCCAACAGCACTGGGAAACAAAGACCAAACCCCTAATGATCTCAGAGGGGTCAGGAAAGGATaGATCTGCTTACCAGAGCAG | + |
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Preference number: 4 (lower is better) Translates to: LSSPTALGNKDQTPNDLRGVRKG*ICLPEQ Trigger: CTGCTCTGGTAAGCAGATGCATCCTTTCCTGACCCC...TCTGAGATCATTAGGGGTTTGGTCTTTGTTTCCCAGTGCTGTTGGGCTGCTTAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098604.12 ENSMUST00000108236.5 |
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| CDS-3UTR CCA 90 bp | AGCCCAACAGCACTGGGAAACAAAGACCAAACCCCTAATGATCTCAGACGCAAGCTCCATTCCTGTTCCTaGCCATGTCATCAGTGGTGT | + |
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Preference number: 4 (lower is better) Translates to: SPTALGNKDQTPNDLRRKLHSCS*PCHQWC Trigger: ACACCACTGATGACATGGCCAGGAACAGGAATGGAG...CTTGCGTCTGAGATCATTAGGGGTTTGGTCTTTGTTTCCCAGTGCTGTTGGGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000098604.12 ENSMUST00000108236.5 ENSMUST00000207601.2 |
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| CDS-3UTR TCA 90 bp | GGTCAAGAGGAGGCCCTAAGCAGCCCAACAGCACTGGGAAACAAAGACCAAACCAGTATTCTTCATAGTTaGAGATCTCAGCAGACAGGT | + |
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Preference number: 4 (lower is better) Translates to: GQEEALSSPTALGNKDQTSILHS*RSQQTG Trigger: ACCTGTCTGCTGAGATCTTCAACTATGAAGAATACT...GGTTTGGTCTTTGTTTCCCAGTGCTGTTGGGCTGCTTAGGGCCTCCTCTTGACC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098604.12 ENSMUST00000108236.5 |
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| CDS-3UTR GCA 90 bp | GAGGCCCTAAGCAGCCCAACAGCACTGGGAAACAAAGACCAAACCCCTAATGATCAAGACACTCCTCCTTaGTCTGGTAGTTATTGCCAT | + |
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Preference number: 4 (lower is better) Translates to: EALSSPTALGNKDQTPNDQDTPP*SGSYCH Trigger: ATGGCAATAACTACCAGAGCAAGGAGGAGTGTCTTG...ATCATTAGGGGTTTGGTCTTTGTTTCCCAGTGCTGTTGGGCTGCTTAGGGCCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098604.12 |
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| CDS-3UTR GCA 90 bp | ACCAAACCCCTAATGATCTCAGACGCAAGCAGTTGCTCTCTTTTTAAACAGCACCAGAGCAGTGCTGCATaGATGCTTCCTGGGAGAGGT | + |
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Preference number: 4 (lower is better) Translates to: TKPLMISDASSCSLFKQHQSSAA*MLPGRG Trigger: ACCTCTCCCAGGAAGCATGCATGCAGCACTGCTCTG...GTGCTGTTTAAAAAGAGAGCAACTGCTTGCGTCTGAGATCATTAGGGGTTTGGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000098604.12 ENSMUST00000108236.5 |
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| CDS-3UTR GCA 90 bp | GACGCAAGCAGTTGCTCTCTTTTTAAACAGCACAAGTTGTCACTCCCGGTTCTGAGGAAAGGATGCATCTaGTTACCAGAGCAGTGCTGC | + |
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Preference number: 4 (lower is better) Translates to: DASSCSLFKQHKLSLPVLRKGCI*LPEQCC Trigger: GCAGCACTGCTCTGGTAAGCAGATGCATCCTTTCCT...CAGAACCGGGAGTGACAACTTGTGCTGTTTAAAAAGAGAGCAACTGCTTGCGTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000098604.12 ENSMUST00000108236.5 |
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| CDS-3UTR CCA 90 bp | TCAGACGCAAGCAGTTGCTCTCTTTTTAAACAGCACAAGTTGTCACTCCCGGTTTATTGTACCACCACCTaGGGATGGAAGCCCGGCATT | + |
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Preference number: 4 (lower is better) Translates to: SDASSCSLFKQHKLSLPVYCTTT*GWKPGI Trigger: AATGCCGGGCTTCCATCCCCAGGTGGTGGTACAATA...AACCGGGAGTGACAACTTGTGCTGTTTAAAAAGAGAGCAACTGCTTGCGTCTGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098604.12 |
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| CDS-3UTR CCA 90 bp | GCAAGCAGTTGCTCTCTTTTTAAACAGCACAAGTTGTCACTCCCGGTTCTGAGCGCCTCCATAAACAAATaGCTGGCAGGACCCATCAGT | + |
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Preference number: 4 (lower is better) Translates to: ASSCSLFKQHKLSLPVLSASINK*LAGPIS Trigger: ACTGATGGGTCCTGCCAGCCATTTGTTTATGGAGGC...GCTCAGAACCGGGAGTGACAACTTGTGCTGTTTAAAAAGAGAGCAACTGCTTGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098604.12 |
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| CDS-3UTR CCA 90 bp | GACGCAAGCAGTTGCTCTCTTTTTAAACAGCACAAGTTGTCACTCCCGGTTCTGCAGCACTCTGCTTTCTaGGAACACTCAGGACAGAAG | + |
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Preference number: 4 (lower is better) Translates to: DASSCSLFKQHKLSLPVLQHSAF*EHSGQK Trigger: CTTCTGTCCTGAGTGTTCCCAGAAAGCAGAGTGCTG...CAGAACCGGGAGTGACAACTTGTGCTGTTTAAAAAGAGAGCAACTGCTTGCGTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000098604.12 ENSMUST00000108236.5 |
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| CDS-3UTR TCA 90 bp | AAACCCCTAATGATCTCAGACGCAAGCAGTTGCTCTCTTTTTAAACAGCACAAGGGCAGGACCCATCAGTaGTATTGTACCACCACCTGG | + |
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Preference number: 4 (lower is better) Translates to: KPLMISDASSCSLFKQHKGRTHQ*YCTTTW Trigger: CCAGGTGGTGGTACAATATCACTGATGGGTCCTGCC...CTTGTGCTGTTTAAAAAGAGAGCAACTGCTTGCGTCTGAGATCATTAGGGGTTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000098604.12 |
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| CDS-3UTR GCA 90 bp | GCAAGCAGTTGCTCTCTTTTTAAACAGCACAAGTTGTCACTCCCGGTTCTGAGCTGCTCTGGTAGTTATTaGCATTGCCTTCACAGCCTC | + |
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Preference number: 4 (lower is better) Translates to: ASSCSLFKQHKLSLPVLSCSGSY*HCLHSL Trigger: GAGGCTGTGAAGGCAATGGCAATAACTACCAGAGCA...GCTCAGAACCGGGAGTGACAACTTGTGCTGTTTAAAAAGAGAGCAACTGCTTGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098604.12 |
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| CDS-3UTR GCA 90 bp | AAAACCCACATAAATCAAACAAACAGTGACCGCTACAAGAATGGGGCTCCTTCCGCAGTGCTGCATGCATaGTTCCTGGGAGAGGTAACT | + |
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Preference number: 4 (lower is better) Translates to: KTHINQTNSDRYKNGAPSAVLHA*FLGEVT Trigger: AGTTACCTCTCCCAGGAAGCATGCATGCAGCACTGC...GGAAGGAGCCCCATTCTTGTAGCGGTCACTGTTTGTTTGATTTATGTGGGTTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098604.12 ENSMUST00000108236.5 |
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| CDS-3UTR GCA 90 bp | AAAACCCACATAAATCAAACAAACAGTGACCGCTACAAGAATGGGGCTCCTTCCGTGTTCTTCACCAGCTaGTCCTTGTCATCCGCAGTG | + |
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Preference number: 4 (lower is better) Translates to: KTHINQTNSDRYKNGAPSVFFTS*SLSSAV Trigger: CACTGCGGATGACAAGGAGCAGCTGGTGAAGAACAC...GGAAGGAGCCCCATTCTTGTAGCGGTCACTGTTTGTTTGATTTATGTGGGTTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098604.12 ENSMUST00000108236.5 |
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| CDS-3UTR GCA 90 bp | ACCAAACCCCTAATGATCTCAGACGCAAGCAGTTGCTCTCTTTTTAAACAGCACGTGTTCTTCACCAGCTaGTCCTTGTCATCCGCAGTG | + |
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Preference number: 4 (lower is better) Translates to: TKPLMISDASSCSLFKQHVFFTS*SLSSAV Trigger: CACTGCGGATGACAAGGAGCAGCTGGTGAAGAACAC...GTGCTGTTTAAAAAGAGAGCAACTGCTTGCGTCTGAGATCATTAGGGGTTTGGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000098604.12 ENSMUST00000108236.5 |
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| CDS-3UTR GCA 90 bp | AAACCCCTAATGATCTCAGACGCAAGCAGTTGCTCTCTTTTTAAACAGCACAAGGGGGTCAGGAAAGGATaGATCTGCTTACCAGAGCAG | + |
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Preference number: 4 (lower is better) Translates to: KPLMISDASSCSLFKQHKGVRKG*ICLPEQ Trigger: CTGCTCTGGTAAGCAGATGCATCCTTTCCTGACCCC...CTTGTGCTGTTTAAAAAGAGAGCAACTGCTTGCGTCTGAGATCATTAGGGGTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000098604.12 ENSMUST00000108236.5 |
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| CDS CCA 90 bp | GAAACTCCACAAGACTCGTGGACGTCTAGTTCTCGGCTGGCCACCTaGGCCCCGGAGAGGAGCAGCGAAGCTACCAAGGCGAGGAGCGCC | + |
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Preference number: 5 (lower is better) Translates to: ETPQDSWTSSSRLAT*APERSSEATKARSA Trigger: GGCGCTCCTCGCCTTGGTAGCTTCGCTGCTCCTCTCCGGGGCCCAGGTGGCCAGCCGAGAACTAGACGTCCACGAGTCTTGTGGAGTTTC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098604.12 |
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| CDS CCA 90 bp | TCATCAGTGGTGTTCTCGTGGACGTCTAGTTCTCGGCTGGCCACCTaGGCCCCGGAGAGGAGCAGCGAAGCTACCAAGGCGAGGAGCGCC | + |
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Preference number: 5 (lower is better) Translates to: SSVVFSWTSSSRLAT*APERSSEATKARSA Trigger: GGCGCTCCTCGCCTTGGTAGCTTCGCTGCTCCTCTCCGGGGCCCAGGTGGCCAGCCGAGAACTAGACGTCCACGAGAACACCACTGATGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000108236.5 ENSMUST00000207601.2 |
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| CDS CCA 90 bp | GAAGCCCGGCATTTCCCCACTACCTTCGAAACTCCACAAGACTCGTaGACGTCTAGTTCTCGGCTGGCCACCTGGGCCCCGGAGAGGAGC | + |
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Preference number: 5 (lower is better) Translates to: EARHFPTTFETPQDS*TSSSRLATWAPERS Trigger: GCTCCTCTCCGGGGCCCAGGTGGCCAGCCGAGAACTAGACGTCCACGAGTCTTGTGGAGTTTCGAAGGTAGTGGGGAAATGCCGGGCTTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098604.12 |
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| CDS CCA 90 bp | TGGCCATGTCATCAGTGGTGTTCTCGTGGACGTCTAGTTCTCGGCTaGCCACCTGGGCCCCGGAGAGGAGCAGCGAAGCTACCAAGGCGA | + |
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Preference number: 5 (lower is better) Translates to: WPCHQWCSRGRLVLG*PPGPRRGAAKLPRR Trigger: TCGCCTTGGTAGCTTCGCTGCTCCTCTCCGGGGCCCAGGTGGCCAGCCGAGAACTAGACGTCCACGAGAACACCACTGATGACATGGCCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000108236.5 ENSMUST00000207601.2 |
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| CDS CCA 90 bp | TCGGCTCCATTCCTGTTCCTGGCCATGTCATCAGTGGTGTTCTCGTaGACGTCTAGTTCTCGGCTGGCCACCTGGGCCCCGGAGAGGAGC | + |
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Preference number: 5 (lower is better) Translates to: SAPFLFLAMSSVVFS*TSSSRLATWAPERS Trigger: GCTCCTCTCCGGGGCCCAGGTGGCCAGCCGAGAACTAGACGTCCACGAGAACACCACTGATGACATGGCCAGGAACAGGAATGGAGCCGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000108236.5 ENSMUST00000207601.2 |
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| CDS CCA 90 bp | CTACCTTCGAAACTCCACAAGACTCGTGGACGTCTAGTTCTCGGCTaGCCACCTGGGCCCCGGAGAGGAGCAGCGAAGCTACCAAGGCGA | + |
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Preference number: 5 (lower is better) Translates to: LPSKLHKTRGRLVLG*PPGPRRGAAKLPRR Trigger: TCGCCTTGGTAGCTTCGCTGCTCCTCTCCGGGGCCCAGGTGGCCAGCCGAGAACTAGACGTCCACGAGTCTTGTGGAGTTTCGAAGGTAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098604.12 |
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| CDS CCA 90 bp | GGACAGAAGAGTCGGCTCCATTCCTGTTCCTGGCCATGTCATCAGTaGTGTTCTCGTGGACGTCTAGTTCTCGGCTGGCCACCTGGGCCC | + |
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Preference number: 5 (lower is better) Translates to: GQKSRLHSCSWPCHQ*CSRGRLVLGWPPGP Trigger: GGGCCCAGGTGGCCAGCCGAGAACTAGACGTCCACGAGAACACCACTGATGACATGGCCAGGAACAGGAATGGAGCCGACTCTTCTGTCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108236.5 ENSMUST00000207601.2 |
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| CDS TCA 90 bp | CGGCTCCATTCCTGTTCCTGGCCATGTCATCAGTGGTGTTCTCAGTaGCACCAGCACACTTGTCAAGACACTCCTCCTTGCTCTGGTAGT | + |
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Preference number: 5 (lower is better) Translates to: RLHSCSWPCHQWCSQ*HQHTCQDTPPCSGS Trigger: ACTACCAGAGCAAGGAGGAGTGTCTTGACAAGTGTGCTGGTGTCACTGAGAACACCACTGATGACATGGCCAGGAACAGGAATGGAGCCG 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098604.12 |
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| CDS GCA 90 bp | CACCAGCACACTTGTCAAGACACTCCTCCTTGCTCTGGTAGTTATTaGCATTGCCTTCACAGCCTCCATAAACAAATGGCTGGCAGGACC | + |
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Preference number: 5 (lower is better) Translates to: HQHTCQDTPPCSGSY*HCLHSLHKQMAGRT Trigger: GGTCCTGCCAGCCATTTGTTTATGGAGGCTGTGAAGGCAATGGCAATAACTACCAGAGCAAGGAGGAGTGTCTTGACAAGTGTGCTGGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098604.12 |
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| CDS-3UTR CAA 90 bp | CTAAGCAGCCCAACAGCACTGGGAAACAAAGACCAAACCCCTAATGATCTCAGATTCACCAGCTGCTCCTaGTCATCCGCAGTGCTCCAA | + |
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Preference number: 5 (lower is better) Translates to: LSSPTALGNKDQTPNDLRFTSCS*SSAVLQ Trigger: TTGGAGCACTGCGGATGACAAGGAGCAGCTGGTGAA...TCTGAGATCATTAGGGGTTTGGTCTTTGTTTCCCAGTGCTGTTGGGCTGCTTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098604.12 ENSMUST00000108236.5 |
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| CDS GCA 90 bp | CACACTTGTCAAGACACTCCTCCTTGCTCTGGTAGTTATTGCCATTaGCTTCACAGCCTCCATAAACAAATGGCTGGCAGGACCCATCAG | + |
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Preference number: 5 (lower is better) Translates to: HTCQDTPPCSGSYCH*LHSLHKQMAGRTHQ Trigger: CTGATGGGTCCTGCCAGCCATTTGTTTATGGAGGCTGTGAAGGCAATGGCAATAACTACCAGAGCAAGGAGGAGTGTCTTGACAAGTGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098604.12 |
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| CDS-3UTR CAA 90 bp | ACCAAACCCCTAATGATCTCAGACGCAAGCAGTTGCTCTCTTTTTAAACAGCACTTCACCAGCTGCTCCTaGTCATCCGCAGTGCTCCAA | + |
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Preference number: 5 (lower is better) Translates to: TKPLMISDASSCSLFKQHFTSCS*SSAVLQ Trigger: TTGGAGCACTGCGGATGACAAGGAGCAGCTGGTGAA...GTGCTGTTTAAAAAGAGAGCAACTGCTTGCGTCTGAGATCATTAGGGGTTTGGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000098604.12 ENSMUST00000108236.5 |
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| CDS-3UTR CAA 90 bp | AAAACCCACATAAATCAAACAAACAGTGACCGCTACAAGAATGGGGCTCCTTCCGACCCATCAGTGATATaGTACCACCACCTGGGGATG | + |
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Preference number: 5 (lower is better) Translates to: KTHINQTNSDRYKNGAPSDPSVI*YHHLGM Trigger: CATCCCCAGGTGGTGGTACAATATCACTGATGGGTC...GGAAGGAGCCCCATTCTTGTAGCGGTCACTGTTTGTTTGATTTATGTGGGTTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000098604.12 |
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| CDS CCA 72 bp | CAAGACTCGTGGACGTCTAGTTCTCGGCTGGCCACCTaGGCCCCGGAGAGGAGCAGCGAAGCTACCAAGGCG | + |
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Preference number: 6 (lower is better) Translates to: QDSWTSSSRLAT*APERSSEATKA Trigger: CGCCTTGGTAGCTTCGCTGCTCCTCTCCGGGGCCCAGGTGGCCAGCCGAGAACTAGACGTCCACGAGTCTTG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098604.12 |
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| CDS CCA 72 bp | GTGTTCTCGTGGACGTCTAGTTCTCGGCTGGCCACCTaGGCCCCGGAGAGGAGCAGCGAAGCTACCAAGGCG | + |
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Preference number: 6 (lower is better) Translates to: VFSWTSSSRLAT*APERSSEATKA Trigger: CGCCTTGGTAGCTTCGCTGCTCCTCTCCGGGGCCCAGGTGGCCAGCCGAGAACTAGACGTCCACGAGAACAC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000108236.5 ENSMUST00000207601.2 |
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| CDS CCA 72 bp | CATCAGTGGTGTTCTCGTGGACGTCTAGTTCTCGGCTaGCCACCTGGGCCCCGGAGAGGAGCAGCGAAGCTA | + |
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Preference number: 6 (lower is better) Translates to: HQWCSRGRLVLG*PPGPRRGAAKL Trigger: TAGCTTCGCTGCTCCTCTCCGGGGCCCAGGTGGCCAGCCGAGAACTAGACGTCCACGAGAACACCACTGATG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000108236.5 ENSMUST00000207601.2 |
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| CDS CCA 72 bp | AAACTCCACAAGACTCGTGGACGTCTAGTTCTCGGCTaGCCACCTGGGCCCCGGAGAGGAGCAGCGAAGCTA | + |
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Preference number: 6 (lower is better) Translates to: KLHKTRGRLVLG*PPGPRRGAAKL Trigger: TAGCTTCGCTGCTCCTCTCCGGGGCCCAGGTGGCCAGCCGAGAACTAGACGTCCACGAGTCTTGTGGAGTTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098604.12 |
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| CDS CCA 72 bp | TTCCTGTTCCTGGCCATGTCATCAGTGGTGTTCTCGTaGACGTCTAGTTCTCGGCTGGCCACCTGGGCCCCG | + |
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Preference number: 6 (lower is better) Translates to: FLFLAMSSVVFS*TSSSRLATWAP Trigger: CGGGGCCCAGGTGGCCAGCCGAGAACTAGACGTCCACGAGAACACCACTGATGACATGGCCAGGAACAGGAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000108236.5 ENSMUST00000207601.2 |
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| CDS CCA 72 bp | CATTTCCCCACTACCTTCGAAACTCCACAAGACTCGTaGACGTCTAGTTCTCGGCTGGCCACCTGGGCCCCG | + |
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Preference number: 6 (lower is better) Translates to: HFPTTFETPQDS*TSSSRLATWAP Trigger: CGGGGCCCAGGTGGCCAGCCGAGAACTAGACGTCCACGAGTCTTGTGGAGTTTCGAAGGTAGTGGGGAAATG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098604.12 |
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| CDS CCA 72 bp | AGTCGGCTCCATTCCTGTTCCTGGCCATGTCATCAGTaGTGTTCTCGTGGACGTCTAGTTCTCGGCTGGCCA | + |
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Preference number: 6 (lower is better) Translates to: SRLHSCSWPCHQ*CSRGRLVLGWP Trigger: TGGCCAGCCGAGAACTAGACGTCCACGAGAACACCACTGATGACATGGCCAGGAACAGGAATGGAGCCGACT 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108236.5 ENSMUST00000207601.2 |
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| CDS TCA 72 bp | AGCCTCCATAAACAAATGGCTGGCAGGACCCATCAGTaGTATTGTACCACCACCTGGGGATGGAAGCCCGGC | + |
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Preference number: 6 (lower is better) Translates to: SLHKQMAGRTHQ*YCTTTWGWKPG Trigger: GCCGGGCTTCCATCCCCAGGTGGTGGTACAATATCACTGATGGGTCCTGCCAGCCATTTGTTTATGGAGGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098604.12 |
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| CDS CCA 72 bp | AGATCTCAGCAGACAGGTCCTCAGCACTCTGCTTTCTaGGAACACTCAGGACAGAAGAGTCGGCTCCATTCC | + |
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Preference number: 6 (lower is better) Translates to: RSQQTGPQHSAF*EHSGQKSRLHS Trigger: GGAATGGAGCCGACTCTTCTGTCCTGAGTGTTCCCAGAAAGCAGAGTGCTGAGGACCTGTCTGCTGAGATCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098604.12 ENSMUST00000108236.5 |
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| CDS GCA 72 bp | CAAGACACTCCTCCTTGCTCTGGTAGTTATTGCCATTaGCTTCACAGCCTCCATAAACAAATGGCTGGCAGG | + |
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Preference number: 6 (lower is better) Translates to: QDTPPCSGSYCH*LHSLHKQMAGR Trigger: CCTGCCAGCCATTTGTTTATGGAGGCTGTGAAGGCAATGGCAATAACTACCAGAGCAAGGAGGAGTGTCTTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098604.12 |
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| CDS GCA 72 bp | ACTTGTCAAGACACTCCTCCTTGCTCTGGTAGTTATTaGCATTGCCTTCACAGCCTCCATAAACAAATGGCT | + |
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Preference number: 6 (lower is better) Translates to: TCQDTPPCSGSY*HCLHSLHKQMA Trigger: AGCCATTTGTTTATGGAGGCTGTGAAGGCAATGGCAATAACTACCAGAGCAAGGAGGAGTGTCTTGACAAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098604.12 |
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