Pregenerated sensors for SPINK8 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000050074Ensembl transcript IDs: ENSMUST00000118732.4, ENSMUST00000198988.5, ENSMUST00000200555.5
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 72 bp | ACACTACCATTGAACTCCAGACCCTGTCTCCCAAACTaGGTATCTTTGAAGAGTCAGTCGTGCTCCACGTGC | + |
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Preference number: 3 (lower is better) Translates to: TLPLNSRPCLPN*VSLKSQSCSTC Trigger: GCACGTGGAGCACGACTGACTCTTCAAAGATACCCAGTTTGGGAGACAGGGTCTGGAGTTCAATGGTAGTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000118732.4 ENSMUST00000198988.5 |
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| 3UTR CAA 72 bp | TTGAACTCCAGACCCTGTCTCCCAAACTGGGTATCTTaGAAGAGTCAGTCGTGCTCCACGTGCCTCTCTGAG | + |
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Preference number: 4 (lower is better) Translates to: LNSRPCLPNWVS*KSQSCSTCLSE Trigger: CTCAGAGAGGCACGTGGAGCACGACTGACTCTTCAAAGATACCCAGTTTGGGAGACAGGGTCTGGAGTTCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000118732.4 ENSMUST00000198988.5 |
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| CDS-3UTR CCA 90 bp | GCTTCGTACACCCTAGTGCACACTACCATTGAACTCCAGACCCTGTCTCCCAAAAAGTCCACACTGAGCTaGCCAGAACAAGGACTGCAA | + |
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Preference number: 4 (lower is better) Translates to: ASYTLVHTTIELQTLSPKKSTLS*PEQGLQ Trigger: TTGCAGTCCTTGTTCTGGCCAGCTCAGTGTGGACTT...TTTGGGAGACAGGGTCTGGAGTTCAATGGTAGTGTGCACTAGGGTGTACGAAGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000118732.4 ENSMUST00000198988.5 |
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| CDS-3UTR CCA 90 bp | GTGCACACTACCATTGAACTCCAGACCCTGTCTCCCAAACTGGGTATCTTTGAAAAGTCCACACTGAGCTaGCCAGAACAAGGACTGCAA | + |
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Preference number: 4 (lower is better) Translates to: VHTTIELQTLSPKLGIFEKSTLS*PEQGLQ Trigger: TTGCAGTCCTTGTTCTGGCCAGCTCAGTGTGGACTT...TTCAAAGATACCCAGTTTGGGAGACAGGGTCTGGAGTTCAATGGTAGTGTGCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000118732.4 ENSMUST00000198988.5 |
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| CDS-3UTR CCA 90 bp | TACACCCTAGTGCACACTACCATTGAACTCCAGACCCTGTCTCCCAAACTGGGTCGAGGAGTGTTCACATaGCCCATCATGCACTTTAAT | + |
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Preference number: 4 (lower is better) Translates to: YTLVHTTIELQTLSPKLGRGVFT*PIMHFN Trigger: ATTAAAGTGCATGATGGGCCATGTGAACACTCCTCG...ACCCAGTTTGGGAGACAGGGTCTGGAGTTCAATGGTAGTGTGCACTAGGGTGTA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000198988.5 |
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| CDS-3UTR GCA 90 bp | CTAGTGCACACTACCATTGAACTCCAGACCCTGTCTCCCAAACTGGGTATCTTTTCACATGGCCCATCATaGACTTTAATTACAGTTCTG | + |
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Preference number: 4 (lower is better) Translates to: LVHTTIELQTLSPKLGIFSHGPS*TLITVL Trigger: CAGAACTGTAATTAAAGTGCATGATGGGCCATGTGA...AAAGATACCCAGTTTGGGAGACAGGGTCTGGAGTTCAATGGTAGTGTGCACTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000198988.5 |
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| CDS-3UTR CAA 90 bp | TACACCCTAGTGCACACTACCATTGAACTCCAGACCCTGTCTCCCAAACTGGGTCATAACTGTATATTCTaGATGCACAAGGCCTTTGTC | + |
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Preference number: 5 (lower is better) Translates to: YTLVHTTIELQTLSPKLGHNCIF*MHKAFV Trigger: GACAAAGGCCTTGTGCATCAAGAATATACAGTTATG...ACCCAGTTTGGGAGACAGGGTCTGGAGTTCAATGGTAGTGTGCACTAGGGTGTA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000118732.4 ENSMUST00000198988.5 |
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| CDS-3UTR CAA 90 bp | CTAGTGCACACTACCATTGAACTCCAGACCCTGTCTCCCAAACTGGGTATCTTTCATAACTGTATATTCTaGATGCACAAGGCCTTTGTC | + |
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Preference number: 5 (lower is better) Translates to: LVHTTIELQTLSPKLGIFHNCIF*MHKAFV Trigger: GACAAAGGCCTTGTGCATCAAGAATATACAGTTATG...AAAGATACCCAGTTTGGGAGACAGGGTCTGGAGTTCAATGGTAGTGTGCACTAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000118732.4 ENSMUST00000198988.5 |
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| CDS TCA 72 bp | AAGGCCTTTGTCTTTTGTAGAAGCTCCCCGGTCATGTaGAAGTTCATAGGAAGGATGAAATCAACTGCAAGG | + |
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Preference number: 6 (lower is better) Translates to: KAFVFCRSSPVM*KFIGRMKSTAR Trigger: CCTTGCAGTTGATTTCATCCTTCCTATGAACTTTCACATGACCGGGGAGCTTCTACAAAAGACAAAGGCCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000118732.4 ENSMUST00000198988.5 ENSMUST00000200555.5 |
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| CDS GCA 72 bp | TCAGACTCATCCGAGGAGTGTTCACATGGCCCATCATaGACTTTAATTACAGTTCTGTCTTCATATAGAATT | + |
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Preference number: 6 (lower is better) Translates to: SDSSEECSHGPS*TLITVLSSYRI Trigger: AATTCTATATGAAGACAGAACTGTAATTAAAGTGCATGATGGGCCATGTGAACACTCCTCGGATGAGTCTGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000198988.5 |
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