Pregenerated sensors for SPINK6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000055095Ensembl transcript IDs: ENSMUST00000068473.4, ENSMUST00000235436.2, ENSMUST00000236634.2
Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | TTTATTGACAAGTCAAAGGAAATAGACATTGTGACCTACATAAGACCCACACGGAAAAATAAGTGTGAGTaGAGACAGGCAACGTGGCAC | + |
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Preference number: 2 (lower is better) Translates to: FIDKSKEIDIVTYIRPTRKNKCE*RQATWH Trigger: GTGCCACGTTGCCTGTCTTCACTCACACTTATTTTT...CCGTGTGGGTCTTATGTAGGTCACAATGTCTATTTCCTTTGACTTGTCAATAAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000068473.4 |
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| CDS-3UTR CCA 90 bp | TTTATTGACAAGTCAAAGGAAATAGACATTGTGACCTACATAAGACCCACACGGATCAGAGCCGCAGAGTaGGTCAGATTCCCTAGTGCA | + |
|
Preference number: 4 (lower is better) Translates to: FIDKSKEIDIVTYIRPTRIRAAE*VRFPSA Trigger: TGCACTAGGGAATCTGACCCACTCTGCGGCTCTGAT...CCGTGTGGGTCTTATGTAGGTCACAATGTCTATTTCCTTTGACTTGTCAATAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068473.4 |
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| CDS-3UTR TCA 90 bp | TTTATTGACAAGTCAAAGGAAATAGACATTGTGACCTACATAAGACCCACACGGTTGTCCTGTCCTCCTTaGCTGAAGGCACCTGAGAAA | + |
|
Preference number: 4 (lower is better) Translates to: FIDKSKEIDIVTYIRPTRLSCPP*LKAPEK Trigger: TTTCTCAGGTGCCTTCAGTCAAGGAGGACAGGACAA...CCGTGTGGGTCTTATGTAGGTCACAATGTCTATTTCCTTTGACTTGTCAATAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068473.4 |
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| CDS-3UTR TCA 90 bp | TTTATTGACAAGTCAAAGGAAATAGACATTGTGACCTACATAAGACCCACACGGTTGACTGAAGGCACCTaGGAAAAAGCAGAGAAGAGC | + |
|
Preference number: 4 (lower is better) Translates to: FIDKSKEIDIVTYIRPTRLTEGT*EKAEKS Trigger: GCTCTTCTCTGCTTTTTCTCAGGTGCCTTCAGTCAA...CCGTGTGGGTCTTATGTAGGTCACAATGTCTATTTCCTTTGACTTGTCAATAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000068473.4 |
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| CDS-3UTR CCA 90 bp | TTTATTGACAAGTCAAAGGAAATAGACATTGTGACCTACATAAGACCCACACGGTTATTCCCATATGTCTaGCCATCAGAGCCGCAGAGT | + |
|
Preference number: 4 (lower is better) Translates to: FIDKSKEIDIVTYIRPTRLFPYV*PSEPQS Trigger: ACTCTGCGGCTCTGATGGCCAGACATATGGGAATAA...CCGTGTGGGTCTTATGTAGGTCACAATGTCTATTTCCTTTGACTTGTCAATAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068473.4 |
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| CDS-3UTR GCA 90 bp | TTTATTGACAAGTCAAAGGAAATAGACATTGTGACCTACATAAGACCCACACGGAGAGCTTTTCTCCAATaGCTTGCAGAAGGCACATTT | + |
|
Preference number: 4 (lower is better) Translates to: FIDKSKEIDIVTYIRPTRRAFLQ*LAEGTF Trigger: AAATGTGCCTTCTGCAAGGCATTGGAGAAAAGCTCT...CCGTGTGGGTCTTATGTAGGTCACAATGTCTATTTCCTTTGACTTGTCAATAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068473.4 |
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| CDS-3UTR GCA 90 bp | TTTATTGACAAGTCAAAGGAAATAGACATTGTGACCTACATAAGACCCACACGGTTTTCTCCAATGCCTTaGAGAAGGCACATTTATTCC | + |
|
Preference number: 4 (lower is better) Translates to: FIDKSKEIDIVTYIRPTRFSPMP*RRHIYS Trigger: GGAATAAATGTGCCTTCTGCAAGGCATTGGAGAAAA...CCGTGTGGGTCTTATGTAGGTCACAATGTCTATTTCCTTTGACTTGTCAATAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068473.4 |
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| CDS-3UTR TCA 90 bp | TTTATTGACAAGTCAAAGGAAATAGACATTGTGACCTACATAAGACCCACACGGTCACCACAATTAATTTaGAAGAGACGATGCCTTAAG | + |
|
Preference number: 4 (lower is better) Translates to: FIDKSKEIDIVTYIRPTRSPQLI*KRRCLK Trigger: CTTAAGGCATCGTCTCTTTCAAATTAATTGTGGTGA...CCGTGTGGGTCTTATGTAGGTCACAATGTCTATTTCCTTTGACTTGTCAATAAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068473.4 |
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| CDS CCA 90 bp | GAAGGCACATTTATTCCCATATGTCTGGCCATCAGAGCCGCAGAGTaGGTCAGATTCCCTAGTGCAGAAGACCTTGGGGTCACGGAACTC | + |
|
Preference number: 5 (lower is better) Translates to: EGTFIPICLAIRAAE*VRFPSAEDLGVTEL Trigger: GAGTTCCGTGACCCCAAGGTCTTCTGCACTAGGGAATCTGACCCACTCTGCGGCTCTGATGGCCAGACATATGGGAATAAATGTGCCTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000068473.4 ENSMUST00000235436.2 ENSMUST00000236634.2 |
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| CDS CCA 90 bp | CTTTTCTCCAATGCCTTGCAGAAGGCACATTTATTCCCATATGTCTaGCCATCAGAGCCGCAGAGTGGGTCAGATTCCCTAGTGCAGAAG | + |
|
Preference number: 5 (lower is better) Translates to: LFSNALQKAHLFPYV*PSEPQSGSDSLVQK Trigger: CTTCTGCACTAGGGAATCTGACCCACTCTGCGGCTCTGATGGCCAGACATATGGGAATAAATGTGCCTTCTGCAAGGCATTGGAGAAAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000068473.4 ENSMUST00000235436.2 ENSMUST00000236634.2 |
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| CDS-3UTR CAA 90 bp | TTTATTGACAAGTCAAAGGAAATAGACATTGTGACCTACATAAGACCCACACGGCTAGTGCAGAAGACCTaGGGGTCACGGAACTCACCA | + |
|
Preference number: 5 (lower is better) Translates to: FIDKSKEIDIVTYIRPTRLVQKT*GSRNSP Trigger: TGGTGAGTTCCGTGACCCCAAGGTCTTCTGCACTAG...CCGTGTGGGTCTTATGTAGGTCACAATGTCTATTTCCTTTGACTTGTCAATAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068473.4 |
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| CDS-3UTR CAA 90 bp | TTTATTGACAAGTCAAAGGAAATAGACATTGTGACCTACATAAGACCCACACGGCTTTTCTCCAATGCCTaGCAGAAGGCACATTTATTC | + |
|
Preference number: 5 (lower is better) Translates to: FIDKSKEIDIVTYIRPTRLFSNA*QKAHLF Trigger: GAATAAATGTGCCTTCTGCAAGGCATTGGAGAAAAG...CCGTGTGGGTCTTATGTAGGTCACAATGTCTATTTCCTTTGACTTGTCAATAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068473.4 |
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| CDS CCA 72 bp | TTTATTCCCATATGTCTGGCCATCAGAGCCGCAGAGTaGGTCAGATTCCCTAGTGCAGAAGACCTTGGGGTC | + |
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Preference number: 6 (lower is better) Translates to: FIPICLAIRAAE*VRFPSAEDLGV Trigger: GACCCCAAGGTCTTCTGCACTAGGGAATCTGACCCACTCTGCGGCTCTGATGGCCAGACATATGGGAATAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000068473.4 ENSMUST00000235436.2 ENSMUST00000236634.2 |
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| CDS TCA 72 bp | AAGACCTTGGGGTCACGGAACTCACCACAATTAATTTaGAAGAGACGATGCCTTAAGACACCTTTCCCTGGA | + |
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Preference number: 6 (lower is better) Translates to: KTLGSRNSPQLI*KRRCLKTPFPG Trigger: TCCAGGGAAAGGTGTCTTAAGGCATCGTCTCTTTCAAATTAATTGTGGTGAGTTCCGTGACCCCAAGGTCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068473.4 |
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