Pregenerated sensors for SPINK4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028415Ensembl transcript IDs: ENSMUST00000030122.5
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | GCTTGGGCTGCATCTTTTATTTCATGTCATAGCCTCTGGGGCATCACTGTTCTCAACAAGGCTCCCAGCTaGCACCATCAGTTCCCTGTC | + |
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Preference number: 4 (lower is better) Translates to: AWAASFISCHSLWGITVLNKAPS*HHQFPV Trigger: GACAGGGAACTGATGGTGTCAGCTGGGAGCCTTGTT...GAGAACAGTGATGCCCCAGAGGCTATGACATGAAATAAAAGATGCAGCCCAAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030122.5 |
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| CDS-3UTR GCA 90 bp | CTTGGGCTGCATCTTTTATTTCATGTCATAGCCTCTGGGGCATCACTGTTCTCCTCAGTTCCCTGTCCATaGCAAGGAGGGGAACCAAGG | + |
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Preference number: 4 (lower is better) Translates to: LGLHLLFHVIASGASLFSSVPCP*QGGEPR Trigger: CCTTGGTTCCCCTCCTTGGCATGGACAGGGAACTGA...GGAGAACAGTGATGCCCCAGAGGCTATGACATGAAATAAAAGATGCAGCCCAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030122.5 |
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| CDS-3UTR GCA 90 bp | TGGGCTGCATCTTTTATTTCATGTCATAGCCTCTGGGGCATCACTGTTCTCCAGGGAAGCTCAGCCATGTaGTCACAGAAGGGCATTCTG | + |
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Preference number: 4 (lower is better) Translates to: WAASFISCHSLWGITVLQGSSAM*SQKGIL Trigger: CAGAATGCCCTTCTGTGAGCACATGGCTGAGCTTCC...CTGGAGAACAGTGATGCCCCAGAGGCTATGACATGAAATAAAAGATGCAGCCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030122.5 |
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| CDS-3UTR CCA 90 bp | GCTTGGGCTGCATCTTTTATTTCATGTCATAGCCTCTGGGGCATCACTGTTCTCCACAGAAGGGCATTCTaGGGAAAACAAGGCTCCCAG | + |
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Preference number: 4 (lower is better) Translates to: AWAASFISCHSLWGITVLHRRAF*GKQGSQ Trigger: CTGGGAGCCTTGTTTTCCCCAGAATGCCCTTCTGTG...GAGAACAGTGATGCCCCAGAGGCTATGACATGAAATAAAAGATGCAGCCCAAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030122.5 |
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| CDS-3UTR CCA 90 bp | TGGGCTGCATCTTTTATTTCATGTCATAGCCTCTGGGGCATCACTGTTCTCCAGTGTCTGGGGACAGTTTaGAAGCTCAGCCATGTGCTC | + |
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Preference number: 4 (lower is better) Translates to: WAASFISCHSLWGITVLQCLGTV*KLSHVL Trigger: GAGCACATGGCTGAGCTTCCAAACTGTCCCCAGACA...CTGGAGAACAGTGATGCCCCAGAGGCTATGACATGAAATAAAAGATGCAGCCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030122.5 |
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| CDS-3UTR CCA 90 bp | GCTTGGGCTGCATCTTTTATTTCATGTCATAGCCTCTGGGGCATCACTGTTCTCATCAGGTTGGGTGTCTaGGGACAGTTTGGAAGCTCA | + |
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Preference number: 4 (lower is better) Translates to: AWAASFISCHSLWGITVLIRLGV*GQFGSS Trigger: TGAGCTTCCAAACTGTCCCCAGACACCCAACCTGAT...GAGAACAGTGATGCCCCAGAGGCTATGACATGAAATAAAAGATGCAGCCCAAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030122.5 |
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| CDS-3UTR CCA 90 bp | TGGGCTGCATCTTTTATTTCATGTCATAGCCTCTGGGGCATCACTGTTCTCCAGCGGGTCAGGCAAAGGTaGCATTCATTTTCATATGTG | + |
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Preference number: 4 (lower is better) Translates to: WAASFISCHSLWGITVLQRVRQR*HSFSYV Trigger: CACATATGAAAATGAATGCCACCTTTGCCTGACCCG...CTGGAGAACAGTGATGCCCCAGAGGCTATGACATGAAATAAAAGATGCAGCCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030122.5 |
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| CDS-3UTR TCA 90 bp | TGGGCTGCATCTTTTATTTCATGTCATAGCCTCTGGGGCATCACTGTTCTCCAGCCATCCTTCATGATTTaGATGTCCTTCATGGTTTTC | + |
|
Preference number: 4 (lower is better) Translates to: WAASFISCHSLWGITVLQPSFMI*MSFMVF Trigger: GAAAACCATGAAGGACATTCAAATCATGAAGGATGG...CTGGAGAACAGTGATGCCCCAGAGGCTATGACATGAAATAAAAGATGCAGCCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030122.5 |
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| CDS CCA 90 bp | GGGGACAGTTTGGAAGCTCAGCCATGTGCTCACAGAAGGGCATTCTaGGGAAAACAAGGCTCCCAGCTGACACCATCAGTTCCCTGTCCA | + |
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Preference number: 5 (lower is better) Translates to: GDSLEAQPCAHRRAF*GKQGSQLTPSVPCP Trigger: TGGACAGGGAACTGATGGTGTCAGCTGGGAGCCTTGTTTTCCCCAGAATGCCCTTCTGTGAGCACATGGCTGAGCTTCCAAACTGTCCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030122.5 |
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| CDS CCA 90 bp | TTTTCATATGTGAGCCCATCCGTGCCACAGATCAGGTTGGGTGTCTaGGGACAGTTTGGAAGCTCAGCCATGTGCTCACAGAAGGGCATT | + |
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Preference number: 5 (lower is better) Translates to: FSYVSPSVPQIRLGV*GQFGSSAMCSQKGI Trigger: AATGCCCTTCTGTGAGCACATGGCTGAGCTTCCAAACTGTCCCCAGACACCCAACCTGATCTGTGGCACGGATGGGCTCACATATGAAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030122.5 |
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| CDS-3UTR CAA 90 bp | GCTTGGGCTGCATCTTTTATTTCATGTCATAGCCTCTGGGGCATCACTGTTCTCGTGTCTGGGGACAGTTaGGAAGCTCAGCCATGTGCT | + |
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Preference number: 5 (lower is better) Translates to: AWAASFISCHSLWGITVLVSGDS*EAQPCA Trigger: AGCACATGGCTGAGCTTCCAAACTGTCCCCAGACAC...GAGAACAGTGATGCCCCAGAGGCTATGACATGAAATAAAAGATGCAGCCCAAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030122.5 |
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| CDS-3UTR CAA 90 bp | TGGGCTGCATCTTTTATTTCATGTCATAGCCTCTGGGGCATCACTGTTCTCCAGGCCATCCTTCATGATTaGAATGTCCTTCATGGTTTT | + |
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Preference number: 5 (lower is better) Translates to: WAASFISCHSLWGITVLQAILHD*NVLHGF Trigger: AAAACCATGAAGGACATTCAAATCATGAAGGATGGC...CTGGAGAACAGTGATGCCCCAGAGGCTATGACATGAAATAAAAGATGCAGCCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030122.5 |
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| CDS TCA 72 bp | ACAGAAGGGCATTCTGGGGAAAACAAGGCTCCCAGCTaGCACCATCAGTTCCCTGTCCATGCCAAGGAGGGG | + |
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Preference number: 6 (lower is better) Translates to: TEGHSGENKAPS*HHQFPVHAKEG Trigger: CCCCTCCTTGGCATGGACAGGGAACTGATGGTGTCAGCTGGGAGCCTTGTTTTCCCCAGAATGCCCTTCTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030122.5 |
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| CDS CCA 72 bp | CGTGCCACAGATCAGGTTGGGTGTCTGGGGACAGTTTaGAAGCTCAGCCATGTGCTCACAGAAGGGCATTCT | + |
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Preference number: 6 (lower is better) Translates to: RATDQVGCLGTV*KLSHVLTEGHS Trigger: AGAATGCCCTTCTGTGAGCACATGGCTGAGCTTCCAAACTGTCCCCAGACACCCAACCTGATCTGTGGCACG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030122.5 |
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| CDS TCA 72 bp | TCCGGGTCAGGCAAAGGTGGCATTCATTTTCATATGTaGGCCCATCCGTGCCACAGATCAGGTTGGGTGTCT | + |
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Preference number: 6 (lower is better) Translates to: SGSGKGGIHFHM*AHPCHRSGWVS Trigger: AGACACCCAACCTGATCTGTGGCACGGATGGGCTCACATATGAAAATGAATGCCACCTTTGCCTGACCCGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030122.5 |
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| CDS CAA 72 bp | TTTTCATATGTGAGCCCATCCGTGCCACAGATCAGGTaGGGTGTCTGGGGACAGTTTGGAAGCTCAGCCATG | + |
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Preference number: 6 (lower is better) Translates to: FSYVSPSVPQIR*GVWGQFGSSAM Trigger: CATGGCTGAGCTTCCAAACTGTCCCCAGACACCCAACCTGATCTGTGGCACGGATGGGCTCACATATGAAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030122.5 |
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| CDS CAA 90 bp | TGGCATTCATTTTCATATGTGAGCCCATCCGTGCCACAGATCAGGTaGGGTGTCTGGGGACAGTTTGGAAGCTCAGCCATGTGCTCACAG | + |
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Preference number: 6 (lower is better) Translates to: WHSFSYVSPSVPQIR*GVWGQFGSSAMCSQ Trigger: CTGTGAGCACATGGCTGAGCTTCCAAACTGTCCCCAGACACCCAACCTGATCTGTGGCACGGATGGGCTCACATATGAAAATGAATGCCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030122.5 |
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