Pregenerated sensors for SPINK2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000053030Ensembl transcript IDs: ENSMUST00000065216.11, ENSMUST00000120429.8, ENSMUST00000121825.2
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTGCAAGCTGCCCATCAGCATGGCTCGTCTTTGATGATATTAATATaGCTACCGTCCTCCCTGATTTTCATGCACAGGGTACATTCATTG | + |
|
Preference number: 1 (lower is better) Translates to: LQAAHQHGSSLMILI*LPSSLIFMHRVHSL Trigger: CAATGAATGTACCCTGTGCATGAAAATCAGGGAGGACGGTAGCCATATTAATATCATCAAAGACGAGCCATGCTGATGGGCAGCTTGCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120429.8 |
||
| 3UTR-3UTR TCA 90 bp | CCGGAAGCCCAGAACAAGAGTTTTAAGTTTATAAACCGCTTTACATCACTGTCTCCCAGAGAAGTTCTGTaGACAAGTATCATGCAAAGA | + |
|
Preference number: 2 (lower is better) Translates to: PEAQNKSFKFINRFTSLSPREVL*TSIMQR Trigger: TCTTTGCATGATACTTGTTCACAGAACTTCTCTGGG...AGACAGTGATGTAAAGCGGTTTATAAACTTAAAACTCTTGTTCTGGGCTTCCGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000065216.11 ENSMUST00000120429.8 ENSMUST00000121825.2 |
||
| 3UTR-3UTR TCA 90 bp | AAACTGAATTGTAGGCCGGAAGCCCAGAACAAGAGTTTTAAGTTTATAAACCGCCCCAGAGAAGTTCTGTaGACAAGTATCATGCAAAGA | + |
|
Preference number: 2 (lower is better) Translates to: KLNCRPEAQNKSFKFINRPREVL*TSIMQR Trigger: TCTTTGCATGATACTTGTTCACAGAACTTCTCTGGG...GCGGTTTATAAACTTAAAACTCTTGTTCTGGGCTTCCGGCCTACAATTCAGTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000065216.11 ENSMUST00000120429.8 ENSMUST00000121825.2 |
||
| 3UTR GCA 72 bp | GGAGGAGAGGAGTTCTCCGTCTGCTCTTCTGCAAGCTaGCCATCAGCATGGCTCGTCTTTGATGATATTAAT | + |
|
Preference number: 3 (lower is better) Translates to: GGEEFSVCSSAS*PSAWLVFDDIN Trigger: ATTAATATCATCAAAGACGAGCCATGCTGATGGGCAGCTTGCAGAAGAGCAGACGGAGAACTCCTCTCCTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120429.8 |
||
| 3UTR CCA 72 bp | TTCTCCGTCTGCTCTTCTGCAAGCTGCCCATCAGCATaGCTCGTCTTTGATGATATTAATATGGCTACCGTC | + |
|
Preference number: 3 (lower is better) Translates to: FSVCSSASCPSA*LVFDDINMATV Trigger: GACGGTAGCCATATTAATATCATCAAAGACGAGCCATGCTGATGGGCAGCTTGCAGAAGAGCAGACGGAGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120429.8 |
||
| 3UTR CCA 72 bp | GCCCATCAGCATGGCTCGTCTTTGATGATATTAATATaGCTACCGTCCTCCCTGATTTTCATGCACAGGGTA | + |
|
Preference number: 3 (lower is better) Translates to: AHQHGSSLMILI*LPSSLIFMHRV Trigger: TACCCTGTGCATGAAAATCAGGGAGGACGGTAGCCATATTAATATCATCAAAGACGAGCCATGCTGATGGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120429.8 |
||
| CDS-3UTR TCA 90 bp | AACCGCTTTACATCACTGTCTTCCAGCCTCTACCCAGAGAAGTTCTGTGAACAAAGGCTGCAAAGTCTGTaGCCAGGAGCAACAGCACCA | + |
|
Preference number: 4 (lower is better) Translates to: NRFTSLSSSLYPEKFCEQRLQSL*PGATAP Trigger: TGGTGCTGTTGCTCCTGGTCACAGACTTTGCAGCCT...TTGTTCACAGAACTTCTCTGGGTAGAGGCTGGAAGACAGTGATGTAAAGCGGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065216.11 ENSMUST00000120429.8 |
||
| CDS-3UTR TCA 90 bp | TCCAGCCTCTACCCAGAGAAGTTCTGTGAACAAGTATCATGCAAAGAAATGGGGGAGTCGAGAGTCTCATaGGAGGCTGCAAAGTCTGTG | + |
|
Preference number: 4 (lower is better) Translates to: SSLYPEKFCEQVSCKEMGESRVS*EAAKSV Trigger: CACAGACTTTGCAGCCTCTCATGAGACTCTCGACTC...CCCCATTTCTTTGCATGATACTTGTTCACAGAACTTCTCTGGGTAGAGGCTGGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000065216.11 ENSMUST00000120429.8 |
||
| CDS-3UTR TCA 90 bp | AAGAGTTTTAAGTTTATAAACCGCTTTACATCACTGTCTTCCAGCCTCTACCCAAGGCTGCAAAGTCTGTaGCCAGGAGCAACAGCACCA | + |
|
Preference number: 4 (lower is better) Translates to: KSFKFINRFTSLSSSLYPRLQSL*PGATAP Trigger: TGGTGCTGTTGCTCCTGGTCACAGACTTTGCAGCCT...TGGGTAGAGGCTGGAAGACAGTGATGTAAAGCGGTTTATAAACTTAAAACTCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065216.11 ENSMUST00000120429.8 |
||
| CDS-3UTR TCA 90 bp | CCGGAAGCCCAGAACAAGAGTTTTAAGTTTATAAACCGCTTTACATCACTGTCTGAGTCGAGAGTCTCATaGGAGGCTGCAAAGTCTGTG | + |
|
Preference number: 4 (lower is better) Translates to: PEAQNKSFKFINRFTSLSESRVS*EAAKSV Trigger: CACAGACTTTGCAGCCTCTCATGAGACTCTCGACTC...AGACAGTGATGTAAAGCGGTTTATAAACTTAAAACTCTTGTTCTGGGCTTCCGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065216.11 ENSMUST00000120429.8 |
||
| CDS-3UTR CCA 90 bp | GCCCAGAACAAGAGTTTTAAGTTTATAAACCGCTTTACATCACTGTCTTCCAGCGTTCCTAGGGCATGCTaGGAAGTCAAAATGACCACA | + |
|
Preference number: 4 (lower is better) Translates to: AQNKSFKFINRFTSLSSSVPRAC*EVKMTT Trigger: TGTGGTCATTTTGACTTCCCAGCATGCCCTAGGAAC...GCTGGAAGACAGTGATGTAAAGCGGTTTATAAACTTAAAACTCTTGTTCTGGGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000065216.11 ENSMUST00000120429.8 ENSMUST00000121825.2 |
||
| CDS-3UTR CCA 90 bp | AAACTGAATTGTAGGCCGGAAGCCCAGAACAAGAGTTTTAAGTTTATAAACCGCGTTCCTAGGGCATGCTaGGAAGTCAAAATGACCACA | + |
|
Preference number: 4 (lower is better) Translates to: KLNCRPEAQNKSFKFINRVPRAC*EVKMTT Trigger: TGTGGTCATTTTGACTTCCCAGCATGCCCTAGGAAC...GCGGTTTATAAACTTAAAACTCTTGTTCTGGGCTTCCGGCCTACAATTCAGTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000065216.11 ENSMUST00000120429.8 ENSMUST00000121825.2 |
||
| CDS GCA 72 bp | ATCCGTTCCGCACACAGGGTTGAGGTTCCTAGGGCATaGTGGGAAGTCAAAATGACCACAGTCTGGTGTTCG | + |
|
Preference number: 6 (lower is better) Translates to: IRSAHRVEVPRA*WEVKMTTVWCS Trigger: CGAACACCAGACTGTGGTCATTTTGACTTCCCAGCATGCCCTAGGAACCTCAACCCTGTGTGCGGAACGGAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065216.11 ENSMUST00000121825.2 |
||
| CDS CCA 72 bp | CGTTCCGCACACAGGGTTGAGGTTCCTAGGGCATGCTaGGAAGTCAAAATGACCACAGTCTGGTGTTCGGAA | + |
|
Preference number: 6 (lower is better) Translates to: RSAHRVEVPRAC*EVKMTTVWCSE Trigger: TTCCGAACACCAGACTGTGGTCATTTTGACTTCCCAGCATGCCCTAGGAACCTCAACCCTGTGTGCGGAACG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065216.11 ENSMUST00000121825.2 |
||
| CDS TCA 72 bp | GGGTTGAGGTTCCTAGGGCATGCTGGGAAGTCAAAATaGCCACAGTCTGGTGTTCGGAACTGTGACCTCTTC | + |
|
Preference number: 6 (lower is better) Translates to: GLRFLGHAGKSK*PQSGVRNCDLF Trigger: GAAGAGGTCACAGTTCCGAACACCAGACTGTGGTCATTTTGACTTCCCAGCATGCCCTAGGAACCTCAACCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065216.11 ENSMUST00000121825.2 |
||
| CDS GCA 72 bp | TTGAGAATCGGAAGAGTCGAGAGTCTCATGAGAGGCTaGAAAGTCTGTGACCAGGAGCAACAGCACCAGTCT | + |
|
Preference number: 6 (lower is better) Translates to: LRIGRVESLMRG*KVCDQEQQHQS Trigger: AGACTGGTGCTGTTGCTCCTGGTCACAGACTTTGCAGCCTCTCATGAGACTCTCGACTCTTCCGATTCTCAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065216.11 ENSMUST00000120429.8 |
||