Pregenerated sensors for SPINK13 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000073551

Ensembl transcript IDs: ENSMUST00000097557.5, ENSMUST00000235190.2

Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR GCA 90 bp	GGCTTGAAATTTGGGTATGGCACAGAGATGAATAAAATTGGCAAATCAAACGCCAGCAGCATCCTCTGGTaGCAACAGCCACTTCTTTTC	+
Preference number: 4 (lower is better) Translates to: GLKFGYGTEMNKIGKSNASSILW*QQPLLF Trigger: GAAAAGAAGTGGCTGTTGGCACCAGAGGATGCTGCT...GGCGTTTGATTTGCCAATTTTATTCATCTCTGTGCCATACCCAAATTTCAAGCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000097557.5 ENSMUST00000235190.2
CDS-3UTR CCA 90 bp	TATGGCACAGAGATGAATAAAATTGGCAAATCAAACGCCTCAAATTCCCAAAGAGAGAGCAGCATCCTCTaGTGCCAACAGCCACTTCTT	+
Preference number: 4 (lower is better) Translates to: YGTEMNKIGKSNASNSQRESSIL*CQQPLL Trigger: AAGAAGTGGCTGTTGGCACCAGAGGATGCTGCTCTC...TCTTTGGGAATTTGAGGCGTTTGATTTGCCAATTTTATTCATCTCTGTGCCATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097557.5 ENSMUST00000235190.2
CDS-3UTR CCA 90 bp	TTGAAATTTGGGTATGGCACAGAGATGAATAAAATTGGCAAATCAAACGCCTCAGAGAGCAGCATCCTCTaGTGCCAACAGCCACTTCTT	+
Preference number: 4 (lower is better) Translates to: LKFGYGTEMNKIGKSNASESSIL*CQQPLL Trigger: AAGAAGTGGCTGTTGGCACCAGAGGATGCTGCTCTC...TGAGGCGTTTGATTTGCCAATTTTATTCATCTCTGTGCCATACCCAAATTTCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097557.5 ENSMUST00000235190.2
CDS-3UTR TCA 90 bp	GGCTTGAAATTTGGGTATGGCACAGAGATGAATAAAATTGGCAAATCAAACGCCCACACTTTCCATATTTaGCAAACTGGATGTGAGGTC	+
Preference number: 4 (lower is better) Translates to: GLKFGYGTEMNKIGKSNAHTFHI*QTGCEV Trigger: GACCTCACATCCAGTTTGTCAAATATGGAAAGTGTG...GGCGTTTGATTTGCCAATTTTATTCATCTCTGTGCCATACCCAAATTTCAAGCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097557.5 ENSMUST00000235190.2
CDS-3UTR GCA 90 bp	ATAAAATTGGCAAATCAAACGCCTCAAATTCCCAAAGAAATAATCCCCAGAATGAGCAGCATCCTCTGGTaGCAACAGCCACTTCTTTTC	+
Preference number: 4 (lower is better) Translates to: IKLANQTPQIPKEIIPRMSSILW*QQPLLF Trigger: GAAAAGAAGTGGCTGTTGGCACCAGAGGATGCTGCT...CATTCTGGGGATTATTTCTTTGGGAATTTGAGGCGTTTGATTTGCCAATTTTAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000097557.5 ENSMUST00000235190.2
CDS-3UTR TCA 90 bp	AAATTGGCAAATCAAACGCCTCAAATTCCCAAAGAAATAATCCCCAGAATGAAGCACACTTTCCATATTTaGCAAACTGGATGTGAGGTC	+
Preference number: 4 (lower is better) Translates to: KLANQTPQIPKEIIPRMKHTFHI*QTGCEV Trigger: GACCTCACATCCAGTTTGTCAAATATGGAAAGTGTG...CTTCATTCTGGGGATTATTTCTTTGGGAATTTGAGGCGTTTGATTTGCCAATTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097557.5 ENSMUST00000235190.2
CDS-3UTR GCA 90 bp	TATGGCACAGAGATGAATAAAATTGGCAAATCAAACGCCTCAAATTCCCAAAGAACTCCCACCGATCAATaGAAAAGAAGCACTCATTCT	+
Preference number: 4 (lower is better) Translates to: YGTEMNKIGKSNASNSQRTPTDQ*KRSTHS Trigger: AGAATGAGTGCTTCTTTTGCATTGATCGGTGGGAGT...TCTTTGGGAATTTGAGGCGTTTGATTTGCCAATTTTATTCATCTCTGTGCCATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000097557.5 ENSMUST00000235190.2
CDS-3UTR GCA 90 bp	ATAAAATTGGCAAATCAAACGCCTCAAATTCCCAAAGAAATAATCCCCAGAATGACTCCCACCGATCAATaGAAAAGAAGCACTCATTCT	+
Preference number: 4 (lower is better) Translates to: IKLANQTPQIPKEIIPRMTPTDQ*KRSTHS Trigger: AGAATGAGTGCTTCTTTTGCATTGATCGGTGGGAGT...CATTCTGGGGATTATTTCTTTGGGAATTTGAGGCGTTTGATTTGCCAATTTTAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000097557.5 ENSMUST00000235190.2
CDS-3UTR CCA 90 bp	ATGAATAAAATTGGCAAATCAAACGCCTCAAATTCCCAAAGAAATAATCCCCAGATAATCAGGGTCTATTaGGTAATACATTTTGCATGG	+
Preference number: 4 (lower is better) Translates to: MNKIGKSNASNSQRNNPQIIRVY*VIHFAW Trigger: CCATGCAAAATGTATTACCCAATAGACCCTGATTAT...CTGGGGATTATTTCTTTGGGAATTTGAGGCGTTTGATTTGCCAATTTTATTCAT 34% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000097557.5 ENSMUST00000235190.2
CDS-3UTR CCA 90 bp	ATAAAATTGGCAAATCAAACGCCTCAAATTCCCAAAGAAATAATCCCCAGAATGATAATCAGGGTCTATTaGGTAATACATTTTGCATGG	+
Preference number: 4 (lower is better) Translates to: IKLANQTPQIPKEIIPRMIIRVY*VIHFAW Trigger: CCATGCAAAATGTATTACCCAATAGACCCTGATTAT...CATTCTGGGGATTATTTCTTTGGGAATTTGAGGCGTTTGATTTGCCAATTTTAT 34% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000097557.5 ENSMUST00000235190.2
CDS GCA 90 bp	GAAGCACTCATTCTTGTAGGTCAAGCCATTGGTAGCACAAACATATaGTTTCACATCTGGACAGTTAGCTTCATAATCAGGGTCTATTGG	+
Preference number: 5 (lower is better) Translates to: EALILVGQAIGSTNI*FHIWTVSFIIRVYW Trigger: CCAATAGACCCTGATTATGAAGCTAACTGTCCAGATGTGAAAGCATATGTTTGTGCTACCAATGGCTTGACCTACAAGAATGAGTGCTTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097557.5 ENSMUST00000235190.2
CDS CCA 90 bp	CTTGTAGGTCAAGCCATTGGTAGCACAAACATATGCTTTCACATCTaGACAGTTAGCTTCATAATCAGGGTCTATTGGGTAATACATTTT	+
Preference number: 5 (lower is better) Translates to: LVGQAIGSTNICFHI*TVSFIIRVYWVIHF Trigger: AAAATGTATTACCCAATAGACCCTGATTATGAAGCTAACTGTCCAGATGTGAAAGCATATGTTTGTGCTACCAATGGCTTGACCTACAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097557.5 ENSMUST00000235190.2
CDS GCA 72 bp	CAAACTGGATGTGAGGTCCAAACTCCCACCGATCAATaGAAAAGAAGCACTCATTCTTGTAGGTCAAGCCAT	+
Preference number: 6 (lower is better) Translates to: QTGCEVQTPTDQ*KRSTHSCRSSH Trigger: ATGGCTTGACCTACAAGAATGAGTGCTTCTTTTGCATTGATCGGTGGGAGTTTGGACCTCACATCCAGTTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097557.5 ENSMUST00000235190.2