Pregenerated sensors for SPINK11 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000073573

Ensembl transcript IDs: ENSMUST00000097587.5, ENSMUST00000239421.2

Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR CAA 72 bp	TCTCTACGCCACATTATGAATCATAGACGAATTCATTaGTTGATTAGGAATTTAAGCCACCAGTTGAGAACA	+
Preference number: 4 (lower is better) Translates to: SLRHIMNHRRIH*LIRNLSHQLRT Trigger: TGTTCTCAACTGGTGGCTTAAATTCCTAATCAACAAATGAATTCGTCTATGATTCATAATGTGGCGTAGAGA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097587.5 ENSMUST00000239421.2
CDS CCA 90 bp	CAGCGTTCTGGAGCAGTCAGATTCACTCTTATACAAGGTACAATTTaGCACTTTTCTAAGACTCTCTGGACTTGCAACAGCAGACTCTGC	+
Preference number: 5 (lower is better) Translates to: QRSGAVRFTLIQGTI*HFSKTLWTCNSRLC Trigger: GCAGAGTCTGCTGTTGCAAGTCCAGAGAGTCTTAGAAAAGTGCCAAATTGTACCTTGTATAAGAGTGAATCTGACTGCTCCAGAACGCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097587.5 ENSMUST00000239421.2
CDS GCA 90 bp	CTTATACAAGGTACAATTTGGCACTTTTCTAAGACTCTCTGGACTTaGAACAGCAGACTCTGCAACAAAATAAGGAAGAAGTACCAAAGT	+
Preference number: 5 (lower is better) Translates to: LIQGTIWHFSKTLWT*NSRLCNKIRKKYQS Trigger: ACTTTGGTACTTCTTCCTTATTTTGTTGCAGAGTCTGCTGTTGCAAGTCCAGAGAGTCTTAGAAAAGTGCCAAATTGTACCTTGTATAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000097587.5 ENSMUST00000239421.2
CDS CCA 90 bp	TTCACTCTTATACAAGGTACAATTTGGCACTTTTCTAAGACTCTCTaGACTTGCAACAGCAGACTCTGCAACAAAATAAGGAAGAAGTAC	+
Preference number: 5 (lower is better) Translates to: FTLIQGTIWHFSKTL*TCNSRLCNKIRKKY Trigger: GTACTTCTTCCTTATTTTGTTGCAGAGTCTGCTGTTGCAAGTCCAGAGAGTCTTAGAAAAGTGCCAAATTGTACCTTGTATAAGAGTGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000097587.5 ENSMUST00000239421.2
CDS CCA 90 bp	TGTAATATGTCATTTGATTATCTGCACAAACTGGGATCAGCGTTCTaGAGCAGTCAGATTCACTCTTATACAAGGTACAATTTGGCACTT	+
Preference number: 5 (lower is better) Translates to: CNMSFDYLHKLGSAF*SSQIHSYTRYNLAL Trigger: AAGTGCCAAATTGTACCTTGTATAAGAGTGAATCTGACTGCTCCAGAACGCTGATCCCAGTTTGTGCAGATAATCAAATGACATATTACA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097587.5 ENSMUST00000239421.2
CDS CCA 90 bp	GAAGTAACATGCATTGTAATATGTCATTTGATTATCTGCACAAACTaGGATCAGCGTTCTGGAGCAGTCAGATTCACTCTTATACAAGGT	+
Preference number: 5 (lower is better) Translates to: EVTCIVICHLIICTN*DQRSGAVRFTLIQG Trigger: ACCTTGTATAAGAGTGAATCTGACTGCTCCAGAACGCTGATCCCAGTTTGTGCAGATAATCAAATGACATATTACAATGCATGTTACTTC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097587.5 ENSMUST00000239421.2
CDS GCA 72 bp	GGTACAATTTGGCACTTTTCTAAGACTCTCTGGACTTaGAACAGCAGACTCTGCAACAAAATAAGGAAGAAG	+
Preference number: 6 (lower is better) Translates to: GTIWHFSKTLWT*NSRLCNKIRKK Trigger: CTTCTTCCTTATTTTGTTGCAGAGTCTGCTGTTGCAAGTCCAGAGAGTCTTAGAAAAGTGCCAAATTGTACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000097587.5 ENSMUST00000239421.2
CDS CCA 72 bp	ATACAAGGTACAATTTGGCACTTTTCTAAGACTCTCTaGACTTGCAACAGCAGACTCTGCAACAAAATAAGG	+
Preference number: 6 (lower is better) Translates to: IQGTIWHFSKTL*TCNSRLCNKIR Trigger: CCTTATTTTGTTGCAGAGTCTGCTGTTGCAAGTCCAGAGAGTCTTAGAAAAGTGCCAAATTGTACCTTGTAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000097587.5 ENSMUST00000239421.2
CDS CCA 72 bp	TGCATTGTAATATGTCATTTGATTATCTGCACAAACTaGGATCAGCGTTCTGGAGCAGTCAGATTCACTCTT	+
Preference number: 6 (lower is better) Translates to: CIVICHLIICTN*DQRSGAVRFTL Trigger: AAGAGTGAATCTGACTGCTCCAGAACGCTGATCCCAGTTTGTGCAGATAATCAAATGACATATTACAATGCA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097587.5 ENSMUST00000239421.2
CDS GCA 72 bp	TTTTCTAAGACTCTCTGGACTTGCAACAGCAGACTCTaGAACAAAATAAGGAAGAAGTACCAAAGTCAGAAT	+
Preference number: 6 (lower is better) Translates to: FSKTLWTCNSRL*NKIRKKYQSQN Trigger: ATTCTGACTTTGGTACTTCTTCCTTATTTTGTTGCAGAGTCTGCTGTTGCAAGTCCAGAGAGTCTTAGAAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000097587.5 ENSMUST00000239421.2

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