Pregenerated sensors for SPIN4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000071722Ensembl transcript IDs: ENSMUST00000096367.5
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ATAAGTCTCATTGAGTCAGGTAAACATCAAATAATCAGGAACCCATaGAACGTTCTACCTGTCAGCGTTGCAAACATCAAAGACCAGTGG | + |
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Preference number: 1 (lower is better) Translates to: ISLIESGKHQIIRNP*NVLPVSVANIKDQW Trigger: CCACTGGTCTTTGATGTTTGCAACGCTGACAGGTAGAACGTTCCATGGGTTCCTGATTATTTGATGTTTACCTGACTCAATGAGACTTAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096367.5 |
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| 3UTR GCA 90 bp | AAATATATAAAACATGAGCACCAAATTCATGACAGTGTTCGCCTCTaGAGAAGAGGTGGTGTGGTAGTTGCAAATGAATTTATTAGCCAT | + |
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Preference number: 1 (lower is better) Translates to: KYIKHEHQIHDSVRL*RRGGVVVANEFISH Trigger: ATGGCTAATAAATTCATTTGCAACTACCACACCACCTCTTCTGCAGAGGCGAACACTGTCATGAATTTGGTGCTCATGTTTTATATATTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096367.5 |
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| 3UTR-3UTR GCA 90 bp | CAAATTCATGACAGTGTTCGCCTCTGCAGAAGAGGTGGTGTGGTAGTTGCAAATTCTACCTGTCAGCGTTaGAAACATCAAAGACCAGTG | + |
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Preference number: 2 (lower is better) Translates to: QIHDSVRLCRRGGVVVANSTCQR*KHQRPV Trigger: CACTGGTCTTTGATGTTTGCAACGCTGACAGGTAGA...ATTTGCAACTACCACACCACCTCTTCTGCAGAGGCGAACACTGTCATGAATTTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096367.5 |
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| 3UTR-3UTR TCA 90 bp | GGAAATAAATGCCCACCAATACCAGAATGGATACTTTTTGGCACATCTGTATGGATTGAAGTTTCTGCTTaGGAGCAGGGAAAACATCCC | + |
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Preference number: 2 (lower is better) Translates to: GNKCPPIPEWILFGTSVWIEVSA*EQGKHP Trigger: GGGATGTTTTCCCTGCTCTCAAGCAGAAACTTCAAT...CCATACAGATGTGCCAAAAAGTATCCATTCTGGTATTGGTGGGCATTTATTTCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000096367.5 |
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| 3UTR-3UTR CCA 90 bp | CAAATTCATGACAGTGTTCGCCTCTGCAGAAGAGGTGGTGTGGTAGTTGCAAATAGAATGGATACTTTTTaGCACATCTGTATGGACTGT | + |
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Preference number: 2 (lower is better) Translates to: QIHDSVRLCRRGGVVVANRMDTF*HICMDC Trigger: ACAGTCCATACAGATGTGCCAAAAAGTATCCATTCT...ATTTGCAACTACCACACCACCTCTTCTGCAGAGGCGAACACTGTCATGAATTTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096367.5 |
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| 3UTR-3UTR TCA 90 bp | CTTTTTGGCACATCTGTATGGACTGTGAACACTGGTGAGAGGAAGTATGAGAGTCAGTTTATCTACTTTTaGGTTGTTTCGGTGAATCCA | + |
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Preference number: 2 (lower is better) Translates to: LFGTSVWTVNTGERKYESQFIYF*VVSVNP Trigger: TGGATTCACCGAAACAACTCAAAAGTAGATAAACTG...ACTCTCATACTTCCTCTCACCAGTGTTCACAGTCCATACAGATGTGCCAAAAAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000096367.5 |
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| 3UTR-3UTR TCA 90 bp | AAACAACTATTGAAAGGGAATTTGTTATTCCAGTTTCTGAAACTCATGGTCTGGCATCTGTATGGACTGTaGACACTGGTGAGAGGAAGT | + |
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Preference number: 2 (lower is better) Translates to: KQLLKGNLLFQFLKLMVWHLYGL*TLVRGS Trigger: ACTTCCTCTCACCAGTGTTCACAGTCCATACAGATG...CCAGACCATGAGTTTCAGAAACTGGAATAACAAATTCCCTTTCAATAGTTGTTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096367.5 |
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| 3UTR-3UTR TCA 90 bp | AAACAACTATTGAAAGGGAATTTGTTATTCCAGTTTCTGAAACTCATGGTCTGGGTGACGGACAGAGACTaGCTGTGCCATTTATCAAAA | + |
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Preference number: 2 (lower is better) Translates to: KQLLKGNLLFQFLKLMVWVTDRD*LCHLSK Trigger: TTTTGATAAATGGCACAGTCAGTCTCTGTCCGTCAC...CCAGACCATGAGTTTCAGAAACTGGAATAACAAATTCCCTTTCAATAGTTGTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096367.5 |
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| 3UTR GCA 72 bp | GAATTAGAAAGAGGGGGAAGGGAGCAGAAGCCACGTTaGACAGTTTATCTACTTTTGAGTTGTTTCGGTGAA | + |
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Preference number: 3 (lower is better) Translates to: ELERGGREQKPR*TVYLLLSCFGE Trigger: TTCACCGAAACAACTCAAAAGTAGATAAACTGTGCAACGTGGCTTCTGCTCCCTTCCCCCTCTTTCTAATTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000096367.5 |
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| 3UTR TCA 72 bp | CTGGTGAGAGGAAGTATGAGAGTGACGGACAGAGACTaGCTGTGCCATTTATCAAAAACCATATCATATGGA | + |
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Preference number: 3 (lower is better) Translates to: LVRGSMRVTDRD*LCHLSKTISYG Trigger: TCCATATGATATGGTTTTTGATAAATGGCACAGTCAGTCTCTGTCCGTCACTCTCATACTTCCTCTCACCAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096367.5 |
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| 3UTR GCA 72 bp | AAACATGAGCACCAAATTCATGACAGTGTTCGCCTCTaGAGAAGAGGTGGTGTGGTAGTTGCAAATGAATTT | + |
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Preference number: 3 (lower is better) Translates to: KHEHQIHDSVRL*RRGGVVVANEF Trigger: AAATTCATTTGCAACTACCACACCACCTCTTCTGCAGAGGCGAACACTGTCATGAATTTGGTGCTCATGTTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096367.5 |
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| 3UTR CCA 72 bp | CCAATACCAGAATGGATACTTTTTGGCACATCTGTATaGACTGTGAACACTGGTGAGAGGAAGTATGAGAGT | + |
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Preference number: 3 (lower is better) Translates to: PIPEWILFGTSV*TVNTGERKYES Trigger: ACTCTCATACTTCCTCTCACCAGTGTTCACAGTCCATACAGATGTGCCAAAAAGTATCCATTCTGGTATTGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096367.5 |
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| 3UTR TCA 72 bp | GGGAGCAGAAGCCACGTTGCACAGTTTATCTACTTTTaGGTTGTTTCGGTGAATCCAAACACTTCTCTTTTT | + |
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Preference number: 3 (lower is better) Translates to: GSRSHVAQFIYF*VVSVNPNTSLF Trigger: AAAAAGAGAAGTGTTTGGATTCACCGAAACAACTCAAAAGTAGATAAACTGTGCAACGTGGCTTCTGCTCCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096367.5 |
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| 3UTR-3UTR CAA 90 bp | CTTTTTGGCACATCTGTATGGACTGTGAACACTGGTGAGAGGAAGTATGAGAGTACAGTTTATCTACTTTaGAGTTGTTTCGGTGAATCC | + |
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Preference number: 3 (lower is better) Translates to: LFGTSVWTVNTGERKYESTVYLL*SCFGES Trigger: GGATTCACCGAAACAACTCAAAAGTAGATAAACTGT...ACTCTCATACTTCCTCTCACCAGTGTTCACAGTCCATACAGATGTGCCAAAAAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096367.5 |
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| 3UTR-3UTR CAA 90 bp | GGAAATAAATGCCCACCAATACCAGAATGGATACTTTTTGGCACATCTGTATGGAGTACCAACATATACTaGAGTCAGAACTGGAAAACA | + |
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Preference number: 3 (lower is better) Translates to: GNKCPPIPEWILFGTSVWSTNIY*SQNWKT Trigger: TGTTTTCCAGTTCTGACTCAAGTATATGTTGGTACT...CCATACAGATGTGCCAAAAAGTATCCATTCTGGTATTGGTGGGCATTTATTTCC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000096367.5 |
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| CDS-3UTR CCA 90 bp | CAAATTCATGACAGTGTTCGCCTCTGCAGAAGAGGTGGTGTGGTAGTTGCAAATTGGACCCGTCGTCTTTaGCGTGTTCCACCTGCTTGC | + |
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Preference number: 4 (lower is better) Translates to: QIHDSVRLCRRGGVVVANWTRRL*RVPPAC Trigger: GCAAGCAGGTGGAACACGCCAAAGACGACGGGTCCA...ATTTGCAACTACCACACCACCTCTTCTGCAGAGGCGAACACTGTCATGAATTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096367.5 |
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| CDS-3UTR GCA 90 bp | ATACCAGAATGGATACTTTTTGGCACATCTGTATGGACTGTGAACACTGGTGAGCGTGTTCCACCTGCTTaGCCACAAGGCTGTCGAGCA | + |
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Preference number: 4 (lower is better) Translates to: IPEWILFGTSVWTVNTGERVPPA*PQGCRA Trigger: TGCTCGACAGCCTTGTGGGCAAGCAGGTGGAACACG...CTCACCAGTGTTCACAGTCCATACAGATGTGCCAAAAAGTATCCATTCTGGTAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096367.5 |
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| CDS-3UTR GCA 90 bp | CAAATTCATGACAGTGTTCGCCTCTGCAGAAGAGGTGGTGTGGTAGTTGCAAATAGGCTCCTGTTCAGCTaGAGGGAAGTAGTAGTTGGA | + |
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Preference number: 4 (lower is better) Translates to: QIHDSVRLCRRGGVVVANRLLFS*REVVVG Trigger: TCCAACTACTACTTCCCTGCAGCTGAACAGGAGCCT...ATTTGCAACTACCACACCACCTCTTCTGCAGAGGCGAACACTGTCATGAATTTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096367.5 |
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| CDS-3UTR GCA 90 bp | GGAAATAAATGCCCACCAATACCAGAATGGATACTTTTTGGCACATCTGTATGGGGCTTCACGGAGACCTaGTCGAGCACAGTACCTTTC | + |
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Preference number: 4 (lower is better) Translates to: GNKCPPIPEWILFGTSVWGFTET*SSTVPF Trigger: GAAAGGTACTGTGCTCGAGCAGGTCTCCGTGAAGCC...CCATACAGATGTGCCAAAAAGTATCCATTCTGGTATTGGTGGGCATTTATTTCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000096367.5 |
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| CDS-3UTR GCA 90 bp | ATACCAGAATGGATACTTTTTGGCACATCTGTATGGACTGTGAACACTGGTGAGCCAGGCGAGAGTCAATaGGAGGAGAAGGAACTCTCT | + |
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Preference number: 4 (lower is better) Translates to: IPEWILFGTSVWTVNTGEPGESQ*EEKELS Trigger: AGAGAGTTCCTTCTCCTCGCATTGACTCTCGCCTGG...CTCACCAGTGTTCACAGTCCATACAGATGTGCCAAAAAGTATCCATTCTGGTAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096367.5 |
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| CDS-3UTR TCA 90 bp | GGAAATAAATGCCCACCAATACCAGAATGGATACTTTTTGGCACATCTGTATGGAAAACCAAGTATCCATaGTGGGGGCTCGCGCCAACA | + |
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Preference number: 4 (lower is better) Translates to: GNKCPPIPEWILFGTSVWKTKYP*WGLAPT Trigger: TGTTGGCGCGAGCCCCCATCATGGATACTTGGTTTT...CCATACAGATGTGCCAAAAAGTATCCATTCTGGTATTGGTGGGCATTTATTTCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000096367.5 |
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| CDS-3UTR GCA 90 bp | GGAAATAAATGCCCACCAATACCAGAATGGATACTTTTTGGCACATCTGTATGGGAACACATGTCCCACTaGCTTCCCAACCAGGGAATC | + |
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Preference number: 4 (lower is better) Translates to: GNKCPPIPEWILFGTSVWEHMSH*LPNQGI Trigger: GATTCCCTGGTTGGGAAGGCAGTGGGACATGTGTTC...CCATACAGATGTGCCAAAAAGTATCCATTCTGGTATTGGTGGGCATTTATTTCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096367.5 |
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| CDS-3UTR TCA 90 bp | AGTTTCTGCTTGAGAGCAGGGAAAACATCCCAAGAAAAATGCCAAATTCTCAAACCCACGATGTTCCTATaGGTGAGGAAAGTGGGCTTA | + |
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Preference number: 4 (lower is better) Translates to: SFCLRAGKTSQEKCQILKPTMFL*VRKVGL Trigger: TAAGCCCACTTTCCTCACTCATAGGAACATCGTGGG...TTTGAGAATTTGGCATTTTTCTTGGGATGTTTTCCCTGCTCTCAAGCAGAAACT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000096367.5 |
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| 3UTR CAA 72 bp | AGGGAGCAGAAGCCACGTTGCACAGTTTATCTACTTTaGAGTTGTTTCGGTGAATCCAAACACTTCTCTTTT | + |
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Preference number: 4 (lower is better) Translates to: REQKPRCTVYLL*SCFGESKHFSF Trigger: AAAAGAGAAGTGTTTGGATTCACCGAAACAACTCAAAAGTAGATAAACTGTGCAACGTGGCTTCTGCTCCCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096367.5 |
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| CDS-3UTR GCA 90 bp | AGTTTCTGCTTGAGAGCAGGGAAAACATCCCAAGAAAAATGCCAAATTCTCAAAACTCTCTTATCTCTGTaGAGTTCCAGTCCGTACACA | + |
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Preference number: 4 (lower is better) Translates to: SFCLRAGKTSQEKCQILKTLLSL*SSSPYT Trigger: TGTGTACGGACTGGAACTGCACAGAGATAAGAGAGT...TTTGAGAATTTGGCATTTTTCTTGGGATGTTTTCCCTGCTCTCAAGCAGAAACT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000096367.5 |
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| CDS-3UTR TCA 90 bp | AGTTTCTGCTTGAGAGCAGGGAAAACATCCCAAGAAAAATGCCAAATTCTCAAAGATCTTTCTCGTAGGTaGTGTAAAACCAAGTATCCA | + |
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Preference number: 4 (lower is better) Translates to: SFCLRAGKTSQEKCQILKDLSRR*CKTKYP Trigger: TGGATACTTGGTTTTACATCACCTACGAGAAAGATC...TTTGAGAATTTGGCATTTTTCTTGGGATGTTTTCCCTGCTCTCAAGCAGAAACT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000096367.5 |
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| CDS-3UTR CCA 90 bp | AAACAACTATTGAAAGGGAATTTGTTATTCCAGTTTCTGAAACTCATGGTCTGGGTAGTAGTTGGAATCTaGAATGATACGCAGGTCACC | + |
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Preference number: 4 (lower is better) Translates to: KQLLKGNLLFQFLKLMVWVVVGI*NDTQVT Trigger: GGTGACCTGCGTATCATTCCAGATTCCAACTACTAC...CCAGACCATGAGTTTCAGAAACTGGAATAACAAATTCCCTTTCAATAGTTGTTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096367.5 |
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| 3UTR CAA 72 bp | GGAGGCACAATAAGATTTAGCCACTGTCCAGAACTTTaGACCTCAAAATTGACCTCAGAAAAACTTAATTTT | + |
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Preference number: 4 (lower is better) Translates to: GGTIRFSHCPEL*TSKLTSEKLNF Trigger: AAAATTAAGTTTTTCTGAGGTCAATTTTGAGGTCAAAAGTTCTGGACAGTGGCTAAATCTTATTGTGCCTCC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000096367.5 |
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| CDS GCA 90 bp | CCACTCATCTTTCTTGCCATGCTCACCTTCGAACACATGTCCCACTaGCTTCCCAACCAGGGAATCGGCCAGGCGAGAGTCAATGCGAGG | + |
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Preference number: 5 (lower is better) Translates to: PLIFLAMLTFEHMSH*LPNQGIGQARVNAR Trigger: CCTCGCATTGACTCTCGCCTGGCCGATTCCCTGGTTGGGAAGGCAGTGGGACATGTGTTCGAAGGTGAGCATGGCAAGAAAGATGAGTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096367.5 |
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| CDS-3UTR CAA 90 bp | GGAAATAAATGCCCACCAATACCAGAATGGATACTTTTTGGCACATCTGTATGGTGCTCCACGGGCTCATaGCCTTCTTTCCAGCCGTGT | + |
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Preference number: 5 (lower is better) Translates to: GNKCPPIPEWILFGTSVWCSTGS*PSFQPC Trigger: ACACGGCTGGAAAGAAGGCAATGAGCCCGTGGAGCA...CCATACAGATGTGCCAAAAAGTATCCATTCTGGTATTGGTGGGCATTTATTTCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096367.5 |
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| CDS-3UTR CAA 90 bp | ACATTGAAGTTTCTGCTTGAGAGCAGGGAAAACATCCCAAGAAAAATGCCAAATAAGATCCCAGTTCTCTaGGACCCGTCGTCTTTGGCG | + |
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Preference number: 5 (lower is better) Translates to: TLKFLLESRENIPRKMPNKIPVL*DPSSLA Trigger: CGCCAAAGACGACGGGTCCAAGAGAACTGGGATCTT...ATTTGGCATTTTTCTTGGGATGTTTTCCCTGCTCTCAAGCAGAAACTTCAATGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000096367.5 |
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| CDS-3UTR CAA 90 bp | AAACAACTATTGAAAGGGAATTTGTTATTCCAGTTTCTGAAACTCATGGTCTGGTTGGACCCGTCGTCTTaGGCGTGTTCCACCTGCTTG | + |
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Preference number: 5 (lower is better) Translates to: KQLLKGNLLFQFLKLMVWLDPSS*ACSTCL Trigger: CAAGCAGGTGGAACACGCCAAAGACGACGGGTCCAA...CCAGACCATGAGTTTCAGAAACTGGAATAACAAATTCCCTTTCAATAGTTGTTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096367.5 |
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| CDS-3UTR CAA 90 bp | ACATTGAAGTTTCTGCTTGAGAGCAGGGAAAACATCCCAAGAAAAATGCCAAATTTCCACTCATCTTTCTaGCCATGCTCACCTTCGAAC | + |
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Preference number: 5 (lower is better) Translates to: TLKFLLESRENIPRKMPNFHSSF*PCSPSN Trigger: GTTCGAAGGTGAGCATGGCAAGAAAGATGAGTGGAA...ATTTGGCATTTTTCTTGGGATGTTTTCCCTGCTCTCAAGCAGAAACTTCAATGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000096367.5 |
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| CDS-3UTR CAA 90 bp | ATACCAGAATGGATACTTTTTGGCACATCTGTATGGACTGTGAACACTGGTGAGCCGTACACACTGTCTTaGCCATCATATTTGATGATA | + |
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Preference number: 5 (lower is better) Translates to: IPEWILFGTSVWTVNTGEPYTLS*PSYLMI Trigger: TATCATCAAATATGATGGCAAAGACAGTGTGTACGG...CTCACCAGTGTTCACAGTCCATACAGATGTGCCAAAAAGTATCCATTCTGGTAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096367.5 |
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| CDS-3UTR CAA 90 bp | ACATTGAAGTTTCTGCTTGAGAGCAGGGAAAACATCCCAAGAAAAATGCCAAATTCTTTGCCATCATATTaGATGATATACAGAGTGGGC | + |
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Preference number: 5 (lower is better) Translates to: TLKFLLESRENIPRKMPNSLPSY*MIYRVG Trigger: GCCCACTCTGTATATCATCAAATATGATGGCAAAGA...ATTTGGCATTTTTCTTGGGATGTTTTCCCTGCTCTCAAGCAGAAACTTCAATGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000096367.5 |
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| CDS CAA 90 bp | CAGAGTGGGCTTCACGGAGACCTGCTCGAGCACAGTACCTTTCCATaGCTCCACGGGCTCATTGCCTTCTTTCCAGCCGTGTTGAATGCG | + |
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Preference number: 6 (lower is better) Translates to: QSGLHGDLLEHSTFP*LHGLIAFFPAVLNA Trigger: CGCATTCAACACGGCTGGAAAGAAGGCAATGAGCCCGTGGAGCAATGGAAAGGTACTGTGCTCGAGCAGGTCTCCGTGAAGCCCACTCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096367.5 |
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| CDS GCA 72 bp | TTTCTTGCCATGCTCACCTTCGAACACATGTCCCACTaGCTTCCCAACCAGGGAATCGGCCAGGCGAGAGTC | + |
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Preference number: 6 (lower is better) Translates to: FLAMLTFEHMSH*LPNQGIGQARV Trigger: GACTCTCGCCTGGCCGATTCCCTGGTTGGGAAGGCAGTGGGACATGTGTTCGAAGGTGAGCATGGCAAGAAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096367.5 |
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| CDS CAA 72 bp | CTTCACGGAGACCTGCTCGAGCACAGTACCTTTCCATaGCTCCACGGGCTCATTGCCTTCTTTCCAGCCGTG | + |
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Preference number: 6 (lower is better) Translates to: LHGDLLEHSTFP*LHGLIAFFPAV Trigger: CACGGCTGGAAAGAAGGCAATGAGCCCGTGGAGCAATGGAAAGGTACTGTGCTCGAGCAGGTCTCCGTGAAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096367.5 |
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| CDS GCA 72 bp | TTCACGGAGACCTGCTCGAGCACAGTACCTTTCCATTaGTCCACGGGCTCATTGCCTTCTTTCCAGCCGTGT | + |
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Preference number: 6 (lower is better) Translates to: FTETCSSTVPFH*STGSLPSFQPC Trigger: ACACGGCTGGAAAGAAGGCAATGAGCCCGTGGAGCAATGGAAAGGTACTGTGCTCGAGCAGGTCTCCGTGAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096367.5 |
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| CDS GCA 72 bp | TATTTGATGATATACAGAGTGGGCTTCACGGAGACCTaGTCGAGCACAGTACCTTTCCATTGCTCCACGGGC | + |
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Preference number: 6 (lower is better) Translates to: YLMIYRVGFTET*SSTVPFHCSTG Trigger: GCCCGTGGAGCAATGGAAAGGTACTGTGCTCGAGCAGGTCTCCGTGAAGCCCACTCTGTATATCATCAAATA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096367.5 |
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