Pregenerated sensors for SPIN2C (Mus musculus)

Ensembl gene IDs: ENSMUSG00000046550

Ensembl transcript IDs: ENSMUST00000049999.9

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR CCA 72 bp	CCAGAACAAAAACAACAGCATTGCTGGCAAAGTTTCTaGGTTATCAGAAACTCTCAAGCTTTTAATACACTG	+
Preference number: 3 (lower is better) Translates to: PEQKQQHCWQSF*VIRNSQAFNTL Trigger: CAGTGTATTAAAAGCTTGAGAGTTTCTGATAACCCAGAAACTTTGCCAGCAATGCTGTTGTTTTTGTTCTGG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049999.9
3UTR-3UTR CAA 90 bp	AATTTGACAGCTGTTTCTTCATATCCCATTCACCAAACATACTCATCTCTTACAACAAAAACAACAGCATaGCTGGCAAAGTTTCTGGGT	+
Preference number: 3 (lower is better) Translates to: NLTAVSSYPIHQTYSSLTTKTTA*LAKFLG Trigger: ACCCAGAAACTTTGCCAGCAATGCTGTTGTTTTTGT...TGTAAGAGATGAGTATGTTTGGTGAATGGGATATGAAGAAACAGCTGTCAAATT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049999.9
CDS-3UTR TCA 90 bp	GACAATGTGTTTTTACATTTAACAGGTCATGTCCACAGACTGGTAGTTTCCAGACAAGGCGCACATCGCTaGCTCCAGAGAACGACACCT	+
Preference number: 4 (lower is better) Translates to: DNVFLHLTGHVHRLVVSRQGAHR*LQRTTP Trigger: AGGTGTCGTTCTCTGGAGTCAGCGATGTGCGCCTTG...TCTGGAAACTACCAGTCTGTGGACATGACCTGTTAAATGTAAAAACACATTGTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049999.9
CDS-3UTR GCA 90 bp	TTCCAGAACAAAAACAACAGCATTGCTGGCAAAGTTTCTGGGTTATCAGAAACTTTCTGGCTCCCTGTCTaGTGGAGGAGATGCACTGGA	+
Preference number: 4 (lower is better) Translates to: FQNKNNSIAGKVSGLSETFWLPV*WRRCTG Trigger: TCCAGTGCATCTCCTCCAGCAGACAGGGAGCCAGAA...AGTTTCTGATAACCCAGAAACTTTGCCAGCAATGCTGTTGTTTTTGTTCTGGAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049999.9
CDS-3UTR CCA 90 bp	ACAAGACAATGTGTTTTTACATTTAACAGGTCATGTCCACAGACTGGTAGTTTCTGGCTCCCTGTCTGCTaGAGGAGATGCACTGGACTC	+
Preference number: 4 (lower is better) Translates to: TRQCVFTFNRSCPQTGSFWLPVC*RRCTGL Trigger: GAGTCCAGTGCATCTCCTCCAGCAGACAGGGAGCCA...GAAACTACCAGTCTGTGGACATGACCTGTTAAATGTAAAAACACATTGTCTTGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049999.9
CDS-3UTR GCA 90 bp	TTCCAGAACAAAAACAACAGCATTGCTGGCAAAGTTTCTGGGTTATCAGAAACTTACGGGATGAAGATCTaGTCCTCTGCCTCTTCTGAG	+
Preference number: 4 (lower is better) Translates to: FQNKNNSIAGKVSGLSETYGMKI*SSASSE Trigger: CTCAGAAGAGGCAGAGGAGCAGATCTTCATCCCGTA...AGTTTCTGATAACCCAGAAACTTTGCCAGCAATGCTGTTGTTTTTGTTCTGGAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049999.9
CDS-3UTR TCA 90 bp	GACAATGTGTTTTTACATTTAACAGGTCATGTCCACAGACTGGTAGTTTCCAGATTGGCTTTAACTTGGTaGATGACCTTGCCTGTCCTC	+
Preference number: 4 (lower is better) Translates to: DNVFLHLTGHVHRLVVSRLALTW*MTLPVL Trigger: GAGGACAGGCAAGGTCATTCACCAAGTTAAAGCCAA...TCTGGAAACTACCAGTCTGTGGACATGACCTGTTAAATGTAAAAACACATTGTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049999.9
CDS-3UTR CAA 90 bp	TTTCCAGAACAAAAACAACAGCATTGCTGGCAAAGTTTCTGGGTTATCAGAAACTACGCCTTCTCCCATTaGCTCTTTTGCTGCACCTTT	+
Preference number: 5 (lower is better) Translates to: FPEQKQQHCWQSFWVIRNYAFSH*LFCCTF Trigger: AAAGGTGCAGCAAAAGAGCAAATGGGAGAAGGCGTA...GTTTCTGATAACCCAGAAACTTTGCCAGCAATGCTGTTGTTTTTGTTCTGGAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049999.9
CDS-3UTR CAA 90 bp	TTCCAGAACAAAAACAACAGCATTGCTGGCAAAGTTTCTGGGTTATCAGAAACTAAATCATCGTCAAACTaGATGAAGTACACAGAAGGC	+
Preference number: 5 (lower is better) Translates to: FQNKNNSIAGKVSGLSETKSSSN*MKYTEG Trigger: GCCTTCTGTGTACTTCATCAAGTTTGACGATGATTT...AGTTTCTGATAACCCAGAAACTTTGCCAGCAATGCTGTTGTTTTTGTTCTGGAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049999.9