Pregenerated sensors for SPIC (Mus musculus)
Ensembl gene IDs: ENSMUSG00000004359Ensembl transcript IDs: ENSMUST00000004473.15, ENSMUST00000133724.8, ENSMUST00000138734.2
Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTGGAACTCAAACAGGTCAGGAAACAGGAGCTGATACAGAGGCCATaGAGGGATGTTCTTTACTGGCTTGCTTCCCCTGGCTTGCTCAGC | + |
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Preference number: 1 (lower is better) Translates to: LELKQVRKQELIQRP*RDVLYWLASPGLLS Trigger: GCTGAGCAAGCCAGGGGAAGCAAGCCAGTAAAGAACATCCCTCCATGGCCTCTGTATCAGCTCCTGTTTCCTGACCTGTTTGAGTTCCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004473.15 |
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| 3UTR TCA 90 bp | TCAACTGAAGCTCCTTTCTCTGTGATAACTCCAGCTGGGTCAAGTTaGCACAAAACTAGCCAGTACACCTGGTATGGTGGCACATGCCTG | + |
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Preference number: 1 (lower is better) Translates to: STEAPFSVITPAGSS*HKTSQYTWYGGTCL Trigger: CAGGCATGTGCCACCATACCAGGTGTACTGGCTAGTTTTGTGTCAACTTGACCCAGCTGGAGTTATCACAGAGAAAGGAGCTTCAGTTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004473.15 |
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| 3UTR TCA 90 bp | GCAAACCTTCTCAGGGCAAGCAAGCATCCACAAAATCATGAGCGCTaGCATACTCTAGACATAAAGTGTTTGCATAGCAAGAGACAGTCT | + |
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Preference number: 1 (lower is better) Translates to: ANLLRASKHPQNHER*HTLDIKCLHSKRQS Trigger: AGACTGTCTCTTGCTATGCAAACACTTTATGTCTAGAGTATGTCAGCGCTCATGATTTTGTGGATGCTTGCTTGCCCTGAGAAGGTTTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004473.15 |
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| 3UTR-3UTR TCA 90 bp | GAAGTCAGGACTGGAACTCAAACAGGTCAGGAAACAGGAGCTGATACAGAGGCCAGAGCTTGGCTTTTCTaGCAGACACTAGCGAGGCAA | + |
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Preference number: 2 (lower is better) Translates to: EVRTGTQTGQETGADTEARAWLF*QTLARQ Trigger: TTGCCTCGCTAGTGTCTGTCAGAAAAGCCAAGCTCT...GGCCTCTGTATCAGCTCCTGTTTCCTGACCTGTTTGAGTTCCAGTCCTGACTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004473.15 |
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| 3UTR-3UTR GCA 90 bp | CCCCTGGCTTGCTCAGCCTGCTCTCTTATAGAACCAAGACTACCAGCCCAGATGGTGGAACCTGAAAAGTaGTTTGGAGACATTCTAGAG | + |
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Preference number: 2 (lower is better) Translates to: PLACSACSLIEPRLPAQMVEPEK*FGDILE Trigger: CTCTAGAATGTCTCCAAAGCACTTTTCAGGTTCCAC...CATCTGGGCTGGTAGTCTTGGTTCTATAAGAGAGCAGGCTGAGCAAGCCAGGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004473.15 |
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| 3UTR-3UTR TCA 90 bp | CACTGCCTGGAAGGTTCTCAGAAGTTCAAACATGTTCTGTGTCTCTCTGCATATTCCCCCACATTTTTCTaGAGACATTCTGGCTCCAGG | + |
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Preference number: 2 (lower is better) Translates to: HCLEGSQKFKHVLCLSAYSPTFF*RHSGSR Trigger: CCTGGAGCCAGAATGTCTTCAGAAAAATGTGGGGGA...ATATGCAGAGAGACACAGAACATGTTTGAACTTCTGAGAACCTTCCAGGCAGTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000004473.15 ENSMUST00000133724.8 |
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| 3UTR-3UTR TCA 90 bp | TCTCCCCCACATTTTTCTGAAGACATTCTGGCTCCAGGATGTTCTTGGATACCCGCTTTGTCAACCCACTaGATACAAGACACCATCTCT | + |
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Preference number: 2 (lower is better) Translates to: SPPHFSEDILAPGCSWIPALSTH*IQDTIS Trigger: AGAGATGGTGTCTTGTATTCAGTGGGTTGACAAAGC...GGGTATCCAAGAACATCCTGGAGCCAGAATGTCTTCAGAAAAATGTGGGGGAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000133724.8 |
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| 3UTR-3UTR CCA 90 bp | GAAGTCAGGACTGGAACTCAAACAGGTCAGGAAACAGGAGCTGATACAGAGGCCTATGTAAACACTGCCTaGAAGGTTCTCAGAAGTTCA | + |
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Preference number: 2 (lower is better) Translates to: EVRTGTQTGQETGADTEAYVNTA*KVLRSS Trigger: TGAACTTCTGAGAACCTTCCAGGCAGTGTTTACATA...GGCCTCTGTATCAGCTCCTGTTTCCTGACCTGTTTGAGTTCCAGTCCTGACTTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004473.15 |
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| 3UTR-3UTR CCA 90 bp | CATTTTTCTGAAGACATTCTGGCTCCAGGATGTTCTTGGATACCCAATCCATGGGCTCCAGGATGTTCTTaGATACCCAATCCATGGACA | + |
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Preference number: 2 (lower is better) Translates to: HFSEDILAPGCSWIPNPWAPGCS*IPNPWT Trigger: TGTCCATGGATTGGGTATCCAAGAACATCCTGGAGC...CCATGGATTGGGTATCCAAGAACATCCTGGAGCCAGAATGTCTTCAGAAAAATG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000004473.15 ENSMUST00000133724.8 |
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| 3UTR-3UTR TCA 90 bp | CACTGCCTGGAAGGTTCTCAGAAGTTCAAACATGTTCTGTGTCTCTCTGCATATTTCTCCGGATTTTTATaGTCTCCCCAGTTCTGGCAT | + |
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Preference number: 2 (lower is better) Translates to: HCLEGSQKFKHVLCLSAYFSGFL*SPQFWH Trigger: ATGCCAGAACTGGGGAGATCATAAAAATCCGGAGAA...ATATGCAGAGAGACACAGAACATGTTTGAACTTCTGAGAACCTTCCAGGCAGTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000133724.8 |
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| 3UTR-3UTR GCA 90 bp | GAACTCAAACAGGTCAGGAAACAGGAGCTGATACAGAGGCCATGGAGGGATGTTGAGACAGTCTACAAATaGTTTCAGTTGCTTCAAATG | + |
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Preference number: 2 (lower is better) Translates to: ELKQVRKQELIQRPWRDVETVYK*FQLLQM Trigger: CATTTGAAGCAACTGAAAGCATTTGTAGACTGTCTC...AACATCCCTCCATGGCCTCTGTATCAGCTCCTGTTTCCTGACCTGTTTGAGTTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004473.15 |
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| 3UTR-3UTR CCA 90 bp | CATTTTTCTGAAGACATTCTGGCTCCAGGATGTTCTTGGATACCCAATCCATGGTTTCTGAAGACATTCTaGCTCCAGGATGTTCTTGGA | + |
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Preference number: 2 (lower is better) Translates to: HFSEDILAPGCSWIPNPWFLKTF*LQDVLG Trigger: TCCAAGAACATCCTGGAGCCAGAATGTCTTCAGAAA...CCATGGATTGGGTATCCAAGAACATCCTGGAGCCAGAATGTCTTCAGAAAAATG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000004473.15 ENSMUST00000133724.8 |
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| 3UTR-3UTR CCA 90 bp | CACTGCCTGGAAGGTTCTCAGAAGTTCAAACATGTTCTGTGTCTCTCTGCATATTATGTAAACACTGCCTaGAAGGTTCTCAGAAGTTCA | + |
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Preference number: 2 (lower is better) Translates to: HCLEGSQKFKHVLCLSAYYVNTA*KVLRSS Trigger: TGAACTTCTGAGAACCTTCCAGGCAGTGTTTACATA...ATATGCAGAGAGACACAGAACATGTTTGAACTTCTGAGAACCTTCCAGGCAGTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000004473.15 ENSMUST00000133724.8 |
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| 3UTR-3UTR GCA 90 bp | AGCAAAGTGTCTGCCGGAATTGTAAGTACCCTTCTGAAACATCTAGGTTTCTTTGTGGAACCTGAAAAGTaGTTTGGAGACATTCTAGAG | + |
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Preference number: 2 (lower is better) Translates to: SKVSAGIVSTLLKHLGFFVEPEK*FGDILE Trigger: CTCTAGAATGTCTCCAAAGCACTTTTCAGGTTCCAC...AAAGAAACCTAGATGTTTCAGAAGGGTACTTACAATTCCGGCAGACACTTTGCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000004473.15 ENSMUST00000133724.8 |
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| 3UTR CAA 90 bp | CAGAAGTTCAAACATGTTCTGTGTCTCTCTGCATATTTTTCTGTTTaGTTGTTTGTTGTTTGTTTTTGCCTTCTTAGTGTGGAACCTGAA | + |
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Preference number: 2 (lower is better) Translates to: QKFKHVLCLSAYFSV*LFVVCFCLLSVEPE Trigger: TTCAGGTTCCACACTAAGAAGGCAAAAACAAACAACAAACAACAAAACAGAAAAATATGCAGAGAGACACAGAACATGTTTGAACTTCTG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000004473.15 ENSMUST00000133724.8 |
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| 3UTR CCA 72 bp | AAACAGGTCAGGAAACAGGAGCTGATACAGAGGCCATaGAGGGATGTTCTTTACTGGCTTGCTTCCCCTGGC | + |
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Preference number: 3 (lower is better) Translates to: KQVRKQELIQRP*RDVLYWLASPG Trigger: GCCAGGGGAAGCAAGCCAGTAAAGAACATCCCTCCATGGCCTCTGTATCAGCTCCTGTTTCCTGACCTGTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004473.15 |
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| 3UTR TCA 72 bp | CAGGACTGGAACTCAAACAGGTCAGGAAACAGGAGCTaGTACAGAGGCCATGGAGGGATGTTCTTTACTGGC | + |
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Preference number: 3 (lower is better) Translates to: QDWNSNRSGNRS*YRGHGGMFFTG Trigger: GCCAGTAAAGAACATCCCTCCATGGCCTCTGTATCAGCTCCTGTTTCCTGACCTGTTTGAGTTCCAGTCCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004473.15 |
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| 3UTR GCA 72 bp | TTCTTTACTGGCTTGCTTCCCCTGGCTTGCTCAGCCTaGTCTCTTATAGAACCAAGACTACCAGCCCAGATG | + |
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Preference number: 3 (lower is better) Translates to: FFTGLLPLACSA*SLIEPRLPAQM Trigger: CATCTGGGCTGGTAGTCTTGGTTCTATAAGAGAGCAGGCTGAGCAAGCCAGGGGAAGCAAGCCAGTAAAGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004473.15 |
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| 3UTR TCA 72 bp | CTAAGTGGCCCTATGCTGGTCTCCCCCACATTTTTCTaGAGACATTCTGGCTCCAGGATGTTCTTGGATACC | + |
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Preference number: 3 (lower is better) Translates to: LSGPMLVSPTFF*RHSGSRMFLDT Trigger: GGTATCCAAGAACATCCTGGAGCCAGAATGTCTTCAGAAAAATGTGGGGGAGACCAGCATAGGGCCACTTAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000004473.15 ENSMUST00000133724.8 |
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| 3UTR TCA 72 bp | GCTCCTTTCTCTGTGATAACTCCAGCTGGGTCAAGTTaGCACAAAACTAGCCAGTACACCTGGTATGGTGGC | + |
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Preference number: 3 (lower is better) Translates to: APFSVITPAGSS*HKTSQYTWYGG Trigger: GCCACCATACCAGGTGTACTGGCTAGTTTTGTGTCAACTTGACCCAGCTGGAGTTATCACAGAGAAAGGAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004473.15 |
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| 3UTR CCA 72 bp | TATGCTGGTCTCCCCCACATTTTTCTGAAGACATTCTaGCTCCAGGATGTTCTTGGATACCCAATCCATGGA | + |
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Preference number: 3 (lower is better) Translates to: YAGLPHIFLKTF*LQDVLGYPIHG Trigger: TCCATGGATTGGGTATCCAAGAACATCCTGGAGCCAGAATGTCTTCAGAAAAATGTGGGGGAGACCAGCATA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000004473.15 ENSMUST00000133724.8 |
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| 3UTR TCA 72 bp | CTCAGGGCAAGCAAGCATCCACAAAATCATGAGCGCTaGCATACTCTAGACATAAAGTGTTTGCATAGCAAG | + |
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Preference number: 3 (lower is better) Translates to: LRASKHPQNHER*HTLDIKCLHSK Trigger: CTTGCTATGCAAACACTTTATGTCTAGAGTATGTCAGCGCTCATGATTTTGTGGATGCTTGCTTGCCCTGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004473.15 |
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| 3UTR GCA 72 bp | GGGAGGAAAGGGTTTATTCAGCTTACAATTCCATACTaGTGTTTATCACCAAGGAAGTCAGGACTGGAACTC | + |
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Preference number: 3 (lower is better) Translates to: GRKGFIQLTIPY*CLSPRKSGLEL Trigger: GAGTTCCAGTCCTGACTTCCTTGGTGATAAACAGCAGTATGGAATTGTAAGCTGAATAAACCCTTTCCTCCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004473.15 |
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| 3UTR-3UTR CAA 90 bp | GTTTGCATAGCAAGAGACAGTCTACAAATGCTTTCAGTTGCTTCAAATGCAATTGGCTCCAGGATGTTCTaGGATACCCAATCCATGGAC | + |
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Preference number: 3 (lower is better) Translates to: VCIARDSLQMLSVASNAIGSRMF*DTQSMD Trigger: GTCCATGGATTGGGTATCCAAGAACATCCTGGAGCC...AATTGCATTTGAAGCAACTGAAAGCATTTGTAGACTGTCTCTTGCTATGCAAAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004473.15 |
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| 3UTR TCA 72 bp | AAACCTTCTCAGGGCAAGCAAGCATCCACAAAATCATaGGCGCTGACATACTCTAGACATAAAGTGTTTGCA | + |
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Preference number: 3 (lower is better) Translates to: KPSQGKQASTKS*ALTYSRHKVFA Trigger: TGCAAACACTTTATGTCTAGAGTATGTCAGCGCTCATGATTTTGTGGATGCTTGCTTGCCCTGAGAAGGTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004473.15 |
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| 3UTR-3UTR CAA 90 bp | CAAAGTGTCTGCCGGAATTGTAAGTACCCTTCTGAAACATCTAGGTTTCTTTTAAGCTTTCTCCTGCCATaGTTCATAAGCAACATTGTC | + |
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Preference number: 3 (lower is better) Translates to: QSVCRNCKYPSETSRFLLSFLLP*FISNIV Trigger: GACAATGTTGCTTATGAACAATGGCAGGAGAAAGCT...TAAAAGAAACCTAGATGTTTCAGAAGGGTACTTACAATTCCGGCAGACACTTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000133724.8 |
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| 3UTR TCA 72 bp | GCCATTGTTCATAAGCAACATTGTCCATTTCAGTTATaGAATCGGGTGCTAATGTCAGTGTCTTTCATCATG | + |
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Preference number: 3 (lower is better) Translates to: AIVHKQHCPFQL*NRVLMSVSFIM Trigger: CATGATGAAAGACACTGACATTAGCACCCGATTTCATAACTGAAATGGACAATGTTGCTTATGAACAATGGC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000133724.8 |
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| CDS-3UTR TCA 90 bp | TCTCCCCCACATTTTTCTGAAGACATTCTGGCTCCAGGATGTTCTTGGATACCCGGGGTTCTCTGTGGGTaGCATTCCATAGTAGTTAGC | + |
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Preference number: 4 (lower is better) Translates to: SPPHFSEDILAPGCSWIPGVLCG*HSIVVS Trigger: GCTAACTACTATGGAATGTCACCCACAGAGAACCCC...GGGTATCCAAGAACATCCTGGAGCCAGAATGTCTTCAGAAAAATGTGGGGGAGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000004473.15 ENSMUST00000133724.8 |
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| CDS-3UTR CCA 90 bp | TCTCCCCCACATTTTTCTGAAGACATTCTGGCTCCAGGATGTTCTTGGATACCCAGAGGGGGTTCTCTGTaGGTGACATTCCATAGTAGT | + |
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Preference number: 4 (lower is better) Translates to: SPPHFSEDILAPGCSWIPRGGSL*VTFHSS Trigger: ACTACTATGGAATGTCACCCACAGAGAACCCCCTCT...GGGTATCCAAGAACATCCTGGAGCCAGAATGTCTTCAGAAAAATGTGGGGGAGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 2 transcripts: ENSMUST00000004473.15 ENSMUST00000133724.8 |
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| CDS-3UTR TCA 90 bp | AGCCAGTACACCTGGTATGGTGGCACATGCCTGTTATTTCATCAACTGAAGGACATGTCAATGGCGTCTTaGAATGTTTGCCCCAAACTG | + |
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Preference number: 4 (lower is better) Translates to: SQYTWYGGTCLLFHQLKDMSMAS*NVCPKL Trigger: CAGTTTGGGGCAAACATTTCAAGACGCCATTGACAT...GTCCTTCAGTTGATGAAATAACAGGCATGTGCCACCATACCAGGTGTACTGGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004473.15 |
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| CDS-3UTR TCA 90 bp | GAAGTCAGGACTGGAACTCAAACAGGTCAGGAAACAGGAGCTGATACAGAGGCCTTTTCTGAGGAGTATTaGCTTTCTCCAGCTGATTGT | + |
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Preference number: 4 (lower is better) Translates to: EVRTGTQTGQETGADTEAFSEEY*LSPADC Trigger: ACAATCAGCTGGAGAAAGTCAATACTCCTCAGAAAA...GGCCTCTGTATCAGCTCCTGTTTCCTGACCTGTTTGAGTTCCAGTCCTGACTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004473.15 |
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| CDS-3UTR TCA 90 bp | AGCCAGTACACCTGGTATGGTGGCACATGCCTGTTATTTCATCAACTGAAGGACTTCTCCGGATTTTTATaGTCTCCCCAGTTCTGGCAT | + |
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Preference number: 4 (lower is better) Translates to: SQYTWYGGTCLLFHQLKDFSGFL*SPQFWH Trigger: ATGCCAGAACTGGGGAGATCATAAAAATCCGGAGAA...GTCCTTCAGTTGATGAAATAACAGGCATGTGCCACCATACCAGGTGTACTGGCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000004473.15 |
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| CDS-3UTR CCA 90 bp | TCTCCCCCACATTTTTCTGAAGACATTCTGGCTCCAGGATGTTCTTGGATACCCTTCTGTACGGATTGGTaGAAGCCTCCTTCCAAATAC | + |
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Preference number: 4 (lower is better) Translates to: SPPHFSEDILAPGCSWIPFCTDW*KPPSKY Trigger: GTATTTGGAAGGAGGCTTCCACCAATCCGTACAGAA...GGGTATCCAAGAACATCCTGGAGCCAGAATGTCTTCAGAAAAATGTGGGGGAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000004473.15 ENSMUST00000133724.8 |
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| CDS-3UTR CCA 90 bp | GAACCTGAAAAGTGCTTTGGAGACATTCTAGAGCTTGGCTTTTCTGACAGACACTCCCAGGTAGTTAGCTaGAGCAAGTCTTTGGAGAAC | + |
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Preference number: 4 (lower is better) Translates to: EPEKCFGDILELGFSDRHSQVVS*SKSLEN Trigger: GTTCTCCAAAGACTTGCTCCAGCTAACTACCTGGGA...GTGTCTGTCAGAAAAGCCAAGCTCTAGAATGTCTCCAAAGCACTTTTCAGGTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004473.15 |
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| CDS-3UTR TCA 90 bp | TCTCCCCCACATTTTTCTGAAGACATTCTGGCTCCAGGATGTTCTTGGATACCCTTTTCTGAGGAGTATTaGCTTTCTCCAGCTGATTGT | + |
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Preference number: 4 (lower is better) Translates to: SPPHFSEDILAPGCSWIPFSEEY*LSPADC Trigger: ACAATCAGCTGGAGAAAGTCAATACTCCTCAGAAAA...GGGTATCCAAGAACATCCTGGAGCCAGAATGTCTTCAGAAAAATGTGGGGGAGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000004473.15 ENSMUST00000133724.8 |
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| CDS-3UTR TCA 90 bp | GAACCTGAAAAGTGCTTTGGAGACATTCTAGAGCTTGGCTTTTCTGACAGACACGCTTTGTCAACCCACTaGATACAAGACACCATCTCT | + |
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Preference number: 4 (lower is better) Translates to: EPEKCFGDILELGFSDRHALSTH*IQDTIS Trigger: AGAGATGGTGTCTTGTATTCAGTGGGTTGACAAAGC...GTGTCTGTCAGAAAAGCCAAGCTCTAGAATGTCTCCAAAGCACTTTTCAGGTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004473.15 |
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| CDS-3UTR CCA 90 bp | GTGGAACCTGAAAAGTGCTTTGGAGACATTCTAGAGCTTGGCTTTTCTGACAGATTCTGTACGGATTGGTaGAAGCCTCCTTCCAAATAC | + |
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Preference number: 4 (lower is better) Translates to: VEPEKCFGDILELGFSDRFCTDW*KPPSKY Trigger: GTATTTGGAAGGAGGCTTCCACCAATCCGTACAGAA...TCTGTCAGAAAAGCCAAGCTCTAGAATGTCTCCAAAGCACTTTTCAGGTTCCAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000004473.15 ENSMUST00000133724.8 |
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| CDS-3UTR CCA 90 bp | CAAAGTGTCTGCCGGAATTGTAAGTACCCTTCTGAAACATCTAGGTTTCTTTTAAGAGGGGGTTCTCTGTaGGTGACATTCCATAGTAGT | + |
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Preference number: 4 (lower is better) Translates to: QSVCRNCKYPSETSRFLLRGGSL*VTFHSS Trigger: ACTACTATGGAATGTCACCCACAGAGAACCCCCTCT...TAAAAGAAACCTAGATGTTTCAGAAGGGTACTTACAATTCCGGCAGACACTTTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000004473.15 ENSMUST00000133724.8 |
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| CDS-3UTR TCA 90 bp | GACTTTATTAGAAATAGCAAAGTGTCTGCCGGAATTGTAAGTACCCTTCTGAAAATGTCAATGGCGTCTTaGAATGTTTGCCCCAAACTG | + |
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Preference number: 4 (lower is better) Translates to: DFIRNSKVSAGIVSTLLKMSMAS*NVCPKL Trigger: CAGTTTGGGGCAAACATTTCAAGACGCCATTGACAT...TTTCAGAAGGGTACTTACAATTCCGGCAGACACTTTGCTATTTCTAATAAAGTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000004473.15 ENSMUST00000133724.8 |
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| CDS TCA 90 bp | ACCATTTGTTACACCTCTCCAGTCATAGAGGGGGTTCTCTGTGGGTaGCATTCCATAGTAGTTAGCGTTGCCTCTGACGTGAGGATAAGG | + |
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Preference number: 5 (lower is better) Translates to: TICYTSPVIEGVLCG*HSIVVSVASDVRIR Trigger: CCTTATCCTCACGTCAGAGGCAACGCTAACTACTATGGAATGTCACCCACAGAGAACCCCCTCTATGACTGGAGAGGTGTAACAAATGGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000004473.15 ENSMUST00000133724.8 ENSMUST00000138734.2 |
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| CDS-3UTR CAA 90 bp | GAACTCAAACAGGTCAGGAAACAGGAGCTGATACAGAGGCCATGGAGGGATGTTGGTCTGCAGAACCATTaGTTACACCTCTCCAGTCAT | + |
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Preference number: 5 (lower is better) Translates to: ELKQVRKQELIQRPWRDVGLQNH*LHLSSH Trigger: ATGACTGGAGAGGTGTAACAAATGGTTCTGCAGACC...AACATCCCTCCATGGCCTCTGTATCAGCTCCTGTTTCCTGACCTGTTTGAGTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004473.15 |
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| CDS-3UTR CAA 90 bp | GTGGAACCTGAAAAGTGCTTTGGAGACATTCTAGAGCTTGGCTTTTCTGACAGAAGCTGGAGCAAGTCTTaGGAGAACAGCCTCGCTGAA | + |
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Preference number: 5 (lower is better) Translates to: VEPEKCFGDILELGFSDRSWSKS*ENSLAE Trigger: TTCAGCGAGGCTGTTCTCCAAAGACTTGCTCCAGCT...TCTGTCAGAAAAGCCAAGCTCTAGAATGTCTCCAAAGCACTTTTCAGGTTCCAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004473.15 |
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| CDS-3UTR CAA 90 bp | GAACTCAAACAGGTCAGGAAACAGGAGCTGATACAGAGGCCATGGAGGGATGTTCGTGAGCATAGTGATTaGCATTCCAGTGGTTTAAAC | + |
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Preference number: 5 (lower is better) Translates to: ELKQVRKQELIQRPWRDVREHSD*HSSGLN Trigger: GTTTAAACCACTGGAATGCAAATCACTATGCTCACG...AACATCCCTCCATGGCCTCTGTATCAGCTCCTGTTTCCTGACCTGTTTGAGTTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004473.15 |
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| CDS-3UTR CAA 90 bp | CATTTTTCTGAAGACATTCTGGCTCCAGGATGTTCTTGGATACCCAATCCATGGGGCGTCTTGAAATGTTaGCCCCAAACTGTCTTGATC | + |
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Preference number: 5 (lower is better) Translates to: HFSEDILAPGCSWIPNPWGVLKC*PQTVLI Trigger: GATCAAGACAGTTTGGGGCAAACATTTCAAGACGCC...CCATGGATTGGGTATCCAAGAACATCCTGGAGCCAGAATGTCTTCAGAAAAATG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000004473.15 ENSMUST00000133724.8 |
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| CDS-3UTR CAA 90 bp | GTGGAACCTGAAAAGTGCTTTGGAGACATTCTAGAGCTTGGCTTTTCTGACAGAGGTCTGCAGAACCATTaGTTACACCTCTCCAGTCAT | + |
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Preference number: 5 (lower is better) Translates to: VEPEKCFGDILELGFSDRGLQNH*LHLSSH Trigger: ATGACTGGAGAGGTGTAACAAATGGTTCTGCAGACC...TCTGTCAGAAAAGCCAAGCTCTAGAATGTCTCCAAAGCACTTTTCAGGTTCCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000004473.15 ENSMUST00000133724.8 |
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| CDS-3UTR CAA 90 bp | CACTGCCTGGAAGGTTCTCAGAAGTTCAAACATGTTCTGTGTCTCTCTGCATATGACACCATCTCTGAATaGCACAGGGATTCGAAAAGG | + |
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Preference number: 5 (lower is better) Translates to: HCLEGSQKFKHVLCLSAYDTISE*HRDSKR Trigger: CCTTTTCGAATCCCTGTGCAATTCAGAGATGGTGTC...ATATGCAGAGAGACACAGAACATGTTTGAACTTCTGAGAACCTTCCAGGCAGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004473.15 |
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| CDS-3UTR CAA 90 bp | CATTTTTCTGAAGACATTCTGGCTCCAGGATGTTCTTGGATACCCAATCCATGGTATGTCAATGGCGTCTaGAAATGTTTGCCCCAAACT | + |
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Preference number: 5 (lower is better) Translates to: HFSEDILAPGCSWIPNPWYVNGV*KCLPQT Trigger: AGTTTGGGGCAAACATTTCAAGACGCCATTGACATA...CCATGGATTGGGTATCCAAGAACATCCTGGAGCCAGAATGTCTTCAGAAAAATG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000004473.15 ENSMUST00000133724.8 |
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| CDS-3UTR CAA 90 bp | CACTGCCTGGAAGGTTCTCAGAAGTTCAAACATGTTCTGTGTCTCTCTGCATATTTGCCCCAAACTGTCTaGATCAATACAACAAGTCAT | + |
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Preference number: 5 (lower is better) Translates to: HCLEGSQKFKHVLCLSAYLPQTV*INTTSH Trigger: ATGACTTGTTGTATTGATCAAGACAGTTTGGGGCAA...ATATGCAGAGAGACACAGAACATGTTTGAACTTCTGAGAACCTTCCAGGCAGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000004473.15 ENSMUST00000133724.8 |
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| CDS-3UTR CAA 90 bp | GAACCTGAAAAGTGCTTTGGAGACATTCTAGAGCTTGGCTTTTCTGACAGACACTTGCCCCAAACTGTCTaGATCAATACAACAAGTCAT | + |
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Preference number: 5 (lower is better) Translates to: EPEKCFGDILELGFSDRHLPQTV*INTTSH Trigger: ATGACTTGTTGTATTGATCAAGACAGTTTGGGGCAA...GTGTCTGTCAGAAAAGCCAAGCTCTAGAATGTCTCCAAAGCACTTTTCAGGTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000004473.15 ENSMUST00000133724.8 |
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| CDS-3UTR CAA 90 bp | CAAAGTGTCTGCCGGAATTGTAAGTACCCTTCTGAAACATCTAGGTTTCTTTTAGGCGTCTTGAAATGTTaGCCCCAAACTGTCTTGATC | + |
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Preference number: 5 (lower is better) Translates to: QSVCRNCKYPSETSRFLLGVLKC*PQTVLI Trigger: GATCAAGACAGTTTGGGGCAAACATTTCAAGACGCC...TAAAAGAAACCTAGATGTTTCAGAAGGGTACTTACAATTCCGGCAGACACTTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000004473.15 ENSMUST00000133724.8 |
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| CDS CAA 90 bp | CGGATTGGTGGAAGCCTCCTTCCAAATACAGGTCTGCAGAACCATTaGTTACACCTCTCCAGTCATAGAGGGGGTTCTCTGTGGGTGACA | + |
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Preference number: 6 (lower is better) Translates to: RIGGSLLPNTGLQNH*LHLSSHRGGSLWVT Trigger: TGTCACCCACAGAGAACCCCCTCTATGACTGGAGAGGTGTAACAAATGGTTCTGCAGACCTGTATTTGGAAGGAGGCTTCCACCAATCCG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000004473.15 ENSMUST00000133724.8 ENSMUST00000138734.2 |
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| CDS CCA 72 bp | ACCAGCTGGCTTTCAGCTATGTTCTGTACGGATTGGTaGAAGCCTCCTTCCAAATACAGGTCTGCAGAACCA | + |
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Preference number: 6 (lower is better) Translates to: TSWLSAMFCTDW*KPPSKYRSAEP Trigger: TGGTTCTGCAGACCTGTATTTGGAAGGAGGCTTCCACCAATCCGTACAGAACATAGCTGAAAGCCAGCTGGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000004473.15 ENSMUST00000133724.8 ENSMUST00000138734.2 |
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| CDS CAA 72 bp | GGAAGCCTCCTTCCAAATACAGGTCTGCAGAACCATTaGTTACACCTCTCCAGTCATAGAGGGGGTTCTCTG | + |
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Preference number: 6 (lower is better) Translates to: GSLLPNTGLQNH*LHLSSHRGGSL Trigger: CAGAGAACCCCCTCTATGACTGGAGAGGTGTAACAAATGGTTCTGCAGACCTGTATTTGGAAGGAGGCTTCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000004473.15 ENSMUST00000133724.8 ENSMUST00000138734.2 |
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| CDS GCA 72 bp | TACGGATTGGTGGAAGCCTCCTTCCAAATACAGGTCTaGAGAACCATTTGTTACACCTCTCCAGTCATAGAG | + |
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Preference number: 6 (lower is better) Translates to: YGLVEASFQIQV*RTICYTSPVIE Trigger: CTCTATGACTGGAGAGGTGTAACAAATGGTTCTGCAGACCTGTATTTGGAAGGAGGCTTCCACCAATCCGTA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000004473.15 ENSMUST00000133724.8 ENSMUST00000138734.2 |
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| CDS CCA 72 bp | GACTTTCTCCAGCTGATTGTTGGATCAATATGTCAATaGCGTCTTGAAATGTTTGCCCCAAACTGTCTTGAT | + |
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Preference number: 6 (lower is better) Translates to: DFLQLIVGSICQ*RLEMFAPNCLD Trigger: ATCAAGACAGTTTGGGGCAAACATTTCAAGACGCCATTGACATATTGATCCAACAATCAGCTGGAGAAAGTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000004473.15 ENSMUST00000133724.8 ENSMUST00000138734.2 |
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| CDS CAA 72 bp | TTGTTGGATCAATATGTCAATGGCGTCTTGAAATGTTaGCCCCAAACTGTCTTGATCAATACAACAAGTCAT | + |
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Preference number: 6 (lower is better) Translates to: LLDQYVNGVLKC*PQTVLINTTSH Trigger: ATGACTTGTTGTATTGATCAAGACAGTTTGGGGCAAACATTTCAAGACGCCATTGACATATTGATCCAACAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000004473.15 ENSMUST00000133724.8 ENSMUST00000138734.2 |
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