Pregenerated sensors for SPIB (Mus musculus)
Ensembl gene IDs: ENSMUSG00000008193Ensembl transcript IDs: ENSMUST00000035323.6, ENSMUST00000098483.9, ENSMUST00000205506.2
Found 59 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GAAAAGACTGGGCCTGAACAGGCGGGTGTGAGGAAGTCACTGGTGTaGGACAGACAGGCACTGAGCAGGGTCCTGGGCAGACACCTGGAC | + |
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Preference number: 1 (lower is better) Translates to: EKTGPEQAGVRKSLV*DRQALSRVLGRHLD Trigger: GTCCAGGTGTCTGCCCAGGACCCTGCTCAGTGCCTGTCTGTCTCACACCAGTGACTTCCTCACACCCGCCTGTTCAGGCCCAGTCTTTTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035323.6 |
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| 3UTR GCA 90 bp | AAGGGCCTCTTCATCGTCTGTTTCTCAGAGAGACGGAAGCCTGAGTaGCCCCCTCCCCTCACTCAGGCTTCAAAGCTCTGGGTTCTGATT | + |
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Preference number: 1 (lower is better) Translates to: KGLFIVCFSERRKPE*PPPLTQASKLWVLI Trigger: AATCAGAACCCAGAGCTTTGAAGCCTGAGTGAGGGGAGGGGGGCACTCAGGCTTCCGTCTCTCTGAGAAACAGACGATGAAGAGGCCCTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000035323.6 |
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| 3UTR TCA 90 bp | GAGGCAGGTGGATTTCTGAGTTTAAGGCCAGCCTGGTCTACAGAGTaGGTTCCAGAACGGCCAGGGCTACACAGAGAAACCCTGTCTCGA | + |
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Preference number: 1 (lower is better) Translates to: EAGGFLSLRPAWSTE*VPERPGLHRETLSR Trigger: TCGAGACAGGGTTTCTCTGTGTAGCCCTGGCCGTTCTGGAACTCACTCTGTAGACCAGGCTGGCCTTAAACTCAGAAATCCACCTGCCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035323.6 |
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| 3UTR CCA 90 bp | CCGTGTAGAATGGCCAGTGCTCCCTCAAACACGACCATCCTAGATTaGAATCCTATACACGGCACAGGAAACTCTGGGGAGGCTCTAGGG | + |
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Preference number: 1 (lower is better) Translates to: PCRMASAPSNTTILD*NPIHGTGNSGEALG Trigger: CCCTAGAGCCTCCCCAGAGTTTCCTGTGCCGTGTATAGGATTCCAATCTAGGATGGTCGTGTTTGAGGGAGCACTGGCCATTCTACACGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035323.6 |
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| 3UTR CCA 90 bp | TCCAAAGAAAGCACCTGCAGGGACTTAATTTGCCTGCCTTGTGGGTaGGGGTTGACCAAGTCTAGAAGTCTGTCTACCCATGGCGTGGGT | + |
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Preference number: 1 (lower is better) Translates to: SKESTCRDLICLPCG*GLTKSRSLSTHGVG Trigger: ACCCACGCCATGGGTAGACAGACTTCTAGACTTGGTCAACCCCCACCCACAAGGCAGGCAAATTAAGTCCCTGCAGGTGCTTTCTTTGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035323.6 |
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| 3UTR CCA 90 bp | ATTCTGCTGTGGATGCCCAAGACAAACCCACAGTTTGAGCCTACTTaGCCTGTAGCACTTGAACGGAAAAGACTGGGCCTGAACAGGCGG | + |
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Preference number: 1 (lower is better) Translates to: ILLWMPKTNPQFEPT*PVALERKRLGLNRR Trigger: CCGCCTGTTCAGGCCCAGTCTTTTCCGTTCAAGTGCTACAGGCCAAGTAGGCTCAAACTGTGGGTTTGTCTTGGGCATCCACAGCAGAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035323.6 |
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| 3UTR TCA 90 bp | AAAAAGACAAGACAATGGAAAGAAACAGTCACGTGGTGCGCTGCCTaGCATCTGAGCATTCTGGCTGAGGCAAGGGCTCAAGGTCTTCCC | + |
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Preference number: 1 (lower is better) Translates to: KKTRQWKETVTWCAA*HLSILAEARAQGLP Trigger: GGGAAGACCTTGAGCCCTTGCCTCAGCCAGAATGCTCAGATGTCAGGCAGCGCACCACGTGACTGTTTCTTTCCATTGTCTTGTCTTTTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035323.6 |
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| 3UTR GCA 90 bp | TTGACAGATCACTATGAAAGCGGGCTTTCCTCCAAAGAAAGCACCTaGAGGGACTTAATTTGCCTGCCTTGTGGGTGGGGGTTGACCAAG | + |
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Preference number: 1 (lower is better) Translates to: LTDHYESGLSSKEST*RDLICLPCGWGLTK Trigger: CTTGGTCAACCCCCACCCACAAGGCAGGCAAATTAAGTCCCTGCAGGTGCTTTCTTTGGAGGAAAGCCCGCTTTCATAGTGATCTGTCAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035323.6 |
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| 3UTR-3UTR TCA 90 bp | CCCTCCCGGCCACCCACAGAGGTGAGTTCCGGTGTGTCACAGGCTCATTGGGGAGGAAAAGACTGGGCCTaGACAGGCGGGTGTGAGGAA | + |
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Preference number: 2 (lower is better) Translates to: PSRPPTEVSSGVSQAHWGGKDWA*TGGCEE Trigger: TTCCTCACACCCGCCTGTTCAGGCCCAGTCTTTTCC...TCCCCAATGAGCCTGTGACACACCGGAACTCACCTCTGTGGGTGGCCGGGAGGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035323.6 |
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| 3UTR-3UTR CCA 90 bp | GGGGGCTGTAGACAGCGCCACCTGCTGGTGAGATGTCATGTGAGCTCACAGGACCGGCACAGGAAACTCTaGGGAGGCTCTAGGGAGAGC | + |
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Preference number: 2 (lower is better) Translates to: GGCRQRHLLVRCHVSSQDRHRKL*GGSRES Trigger: GCTCTCCCTAGAGCCTCCCCAGAGTTTCCTGTGCCG...GTCCTGTGAGCTCACATGACATCTCACCAGCAGGTGGCGCTGTCTACAGCCCCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035323.6 |
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| 3UTR-3UTR GCA 90 bp | AAGAATAAAAGGCACCGGCCTTGCCACAGCCATACCTCTGCCACACATCCCCCTGAGGGTCCCAAGGGGTaGCTGAGGCAAGAGGAGCCT | + |
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Preference number: 2 (lower is better) Translates to: KNKRHRPCHSHTSATHPPEGPKG*LRQEEP Trigger: AGGCTCCTCTTGCCTCAGGCACCCCTTGGGACCCTC...AGGGGGATGTGTGGCAGAGGTATGGCTGTGGCAAGGCCGGTGCCTTTTATTCTT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000035323.6 |
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| 3UTR CAA 90 bp | GAAAGCACCTGCAGGGACTTAATTTGCCTGCCTTGTGGGTGGGGGTaGACCAAGTCTAGAAGTCTGTCTACCCATGGCGTGGGTAAGCAC | + |
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Preference number: 2 (lower is better) Translates to: ESTCRDLICLPCGWG*TKSRSLSTHGVGKH Trigger: GTGCTTACCCACGCCATGGGTAGACAGACTTCTAGACTTGGTCAACCCCCACCCACAAGGCAGGCAAATTAAGTCCCTGCAGGTGCTTTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035323.6 |
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| 3UTR-3UTR GCA 90 bp | TGGGTTCTGATTCTGCTGTGGATGCCCAAGACAAACCCACAGTTTGAGCCTACTCAGTCAGTGTGTGAATaGAGGGCTGCTGAGAGCCTA | + |
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Preference number: 2 (lower is better) Translates to: WVLILLWMPKTNPQFEPTQSVCE*RAAESL Trigger: TAGGCTCTCAGCAGCCCTGCATTCACACACTGACTG...AGTAGGCTCAAACTGTGGGTTTGTCTTGGGCATCCACAGCAGAATCAGAACCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035323.6 |
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| 3UTR-3UTR CCA 90 bp | TGGGTTCTGATTCTGCTGTGGATGCCCAAGACAAACCCACAGTTTGAGCCTACTAAAGTCACACACAGGTaGCACAGGGTTCTCAGAGAG | + |
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Preference number: 2 (lower is better) Translates to: WVLILLWMPKTNPQFEPTKVTHR*HRVLRE Trigger: CTCTCTGAGAACCCTGTGCCACCTGTGTGTGACTTT...AGTAGGCTCAAACTGTGGGTTTGTCTTGGGCATCCACAGCAGAATCAGAACCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035323.6 |
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| 3UTR-3UTR TCA 90 bp | TGGGTTCTGATTCTGCTGTGGATGCCCAAGACAAACCCACAGTTTGAGCCTACTAGAAACCTGCCATTCTaGAACCGTGTAGAATGGCCA | + |
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Preference number: 2 (lower is better) Translates to: WVLILLWMPKTNPQFEPTRNLPF*NRVEWP Trigger: TGGCCATTCTACACGGTTTCAGAATGGCAGGTTTCT...AGTAGGCTCAAACTGTGGGTTTGTCTTGGGCATCCACAGCAGAATCAGAACCCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035323.6 |
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| 3UTR-3UTR TCA 90 bp | TGGGTTCTGATTCTGCTGTGGATGCCCAAGACAAACCCACAGTTTGAGCCTACTCTTGACAGATCACTATaGAAGCGGGCTTTCCTCCAA | + |
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Preference number: 2 (lower is better) Translates to: WVLILLWMPKTNPQFEPTLDRSL*KRAFLQ Trigger: TTGGAGGAAAGCCCGCTTTCATAGTGATCTGTCAAG...AGTAGGCTCAAACTGTGGGTTTGTCTTGGGCATCCACAGCAGAATCAGAACCCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035323.6 |
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| 3UTR CAA 90 bp | TATGTTCATAGTTCCAGACGCAGAGGCAGGAAGAGTGTCATGAGCTaGAAGCCAGCCTGGGCTACACAAATAGACCTTGACTTAAGAAAA | + |
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Preference number: 2 (lower is better) Translates to: YVHSSRRRGRKSVMS*KPAWATQIDLDLRK Trigger: TTTTCTTAAGTCAAGGTCTATTTGTGTAGCCCAGGCTGGCTTCAAGCTCATGACACTCTTCCTGCCTCTGCGTCTGGAACTATGAACATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035323.6 |
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| 3UTR TCA 72 bp | CATGACCCTGTTCCCCCTCCCGGCCACCCACAGAGGTaGGTTCCGGTGTGTCACAGGCTCATTGGGGAGGCT | + |
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Preference number: 3 (lower is better) Translates to: HDPVPPPGHPQR*VPVCHRLIGEA Trigger: AGCCTCCCCAATGAGCCTGTGACACACCGGAACTCACCTCTGTGGGTGGCCGGGAGGGGGAACAGGGTCATG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000035323.6 |
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| 3UTR TCA 72 bp | GGGCCTGAACAGGCGGGTGTGAGGAAGTCACTGGTGTaGGACAGACAGGCACTGAGCAGGGTCCTGGGCAGA | + |
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Preference number: 3 (lower is better) Translates to: GPEQAGVRKSLV*DRQALSRVLGR Trigger: TCTGCCCAGGACCCTGCTCAGTGCCTGTCTGTCTCACACCAGTGACTTCCTCACACCCGCCTGTTCAGGCCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035323.6 |
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| 3UTR-3UTR CAA 90 bp | CCCTCCCGGCCACCCACAGAGGTGAGTTCCGGTGTGTCACAGGCTCATTGGGGATGTGATGGTGCACCCTaGTCATCCCAGCACTCAGGA | + |
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Preference number: 3 (lower is better) Translates to: PSRPPTEVSSGVSQAHWGCDGAP*SSQHSG Trigger: TCCTGAGTGCTGGGATGACAAGGGTGCACCATCACA...TCCCCAATGAGCCTGTGACACACCGGAACTCACCTCTGTGGGTGGCCGGGAGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035323.6 |
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| 3UTR-3UTR CAA 90 bp | CCCTCCCGGCCACCCACAGAGGTGAGTTCCGGTGTGTCACAGGCTCATTGGGGACTTAATTTGCCTGCCTaGTGGGTGGGGGTTGACCAA | + |
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Preference number: 3 (lower is better) Translates to: PSRPPTEVSSGVSQAHWGLNLPA*WVGVDQ Trigger: TTGGTCAACCCCCACCCACAAGGCAGGCAAATTAAG...TCCCCAATGAGCCTGTGACACACCGGAACTCACCTCTGTGGGTGGCCGGGAGGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000035323.6 |
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| 3UTR TCA 72 bp | CACGTGGTGCGCTGCCTGACATCTGAGCATTCTGGCTaGGGCAAGGGCTCAAGGTCTTCCCTAGCTACACAG | + |
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Preference number: 3 (lower is better) Translates to: HVVRCLTSEHSG*GKGSRSSLATQ Trigger: CTGTGTAGCTAGGGAAGACCTTGAGCCCTTGCCTCAGCCAGAATGCTCAGATGTCAGGCAGCGCACCACGTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035323.6 |
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| 3UTR GCA 72 bp | TTCATCGTCTGTTTCTCAGAGAGACGGAAGCCTGAGTaGCCCCCTCCCCTCACTCAGGCTTCAAAGCTCTGG | + |
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Preference number: 3 (lower is better) Translates to: FIVCFSERRKPE*PPPLTQASKLW Trigger: CCAGAGCTTTGAAGCCTGAGTGAGGGGAGGGGGGCACTCAGGCTTCCGTCTCTCTGAGAAACAGACGATGAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000035323.6 |
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| 3UTR CCA 72 bp | GGCAGACACCTGGACAGAGGCCGGCCCCAGAAAAGCTaGCCAGAAGTCACCAGTTGTCCAAAGATTCACACT | + |
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Preference number: 3 (lower is better) Translates to: GRHLDRGRPQKS*PEVTSCPKIHT Trigger: AGTGTGAATCTTTGGACAACTGGTGACTTCTGGCCAGCTTTTCTGGGGCCGGCCTCTGTCCAGGTGTCTGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035323.6 |
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| 3UTR TCA 72 bp | GGAAAGAAACAGTCACGTGGTGCGCTGCCTGACATCTaGGCATTCTGGCTGAGGCAAGGGCTCAAGGTCTTC | + |
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Preference number: 3 (lower is better) Translates to: GKKQSRGALPDI*AFWLRQGLKVF Trigger: GAAGACCTTGAGCCCTTGCCTCAGCCAGAATGCTCAGATGTCAGGCAGCGCACCACGTGACTGTTTCTTTCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035323.6 |
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| 3UTR TCA 72 bp | CCCCTCCCCTCACTCAGGCTTCAAAGCTCTGGGTTCTaGTTCTGCTGTGGATGCCCAAGACAAACCCACAGT | + |
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Preference number: 3 (lower is better) Translates to: PLPSLRLQSSGF*FCCGCPRQTHS Trigger: ACTGTGGGTTTGTCTTGGGCATCCACAGCAGAATCAGAACCCAGAGCTTTGAAGCCTGAGTGAGGGGAGGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035323.6 |
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| 3UTR GCA 72 bp | CACTATGAAAGCGGGCTTTCCTCCAAAGAAAGCACCTaGAGGGACTTAATTTGCCTGCCTTGTGGGTGGGGG | + |
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Preference number: 3 (lower is better) Translates to: HYESGLSSKEST*RDLICLPCGWG Trigger: CCCCCACCCACAAGGCAGGCAAATTAAGTCCCTGCAGGTGCTTTCTTTGGAGGAAAGCCCGCTTTCATAGTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035323.6 |
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| 3UTR TCA 72 bp | GGATTTCTGAGTTTAAGGCCAGCCTGGTCTACAGAGTaGGTTCCAGAACGGCCAGGGCTACACAGAGAAACC | + |
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Preference number: 3 (lower is better) Translates to: GFLSLRPAWSTE*VPERPGLHRET Trigger: GGTTTCTCTGTGTAGCCCTGGCCGTTCTGGAACTCACTCTGTAGACCAGGCTGGCCTTAAACTCAGAAATCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035323.6 |
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| 3UTR GCA 72 bp | CACAACATACAGGTCGCGCCTCAGTCAGTGTGTGAATaGAGGGCTGCTGAGAGCCTAGAGAACTTCCCATAT | + |
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Preference number: 3 (lower is better) Translates to: HNIQVAPQSVCE*RAAESLENFPY Trigger: ATATGGGAAGTTCTCTAGGCTCTCAGCAGCCCTGCATTCACACACTGACTGAGGCGCGACCTGTATGTTGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035323.6 |
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| 3UTR CCA 72 bp | AGCACCTGCAGGGACTTAATTTGCCTGCCTTGTGGGTaGGGGTTGACCAAGTCTAGAAGTCTGTCTACCCAT | + |
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Preference number: 3 (lower is better) Translates to: STCRDLICLPCG*GLTKSRSLSTH Trigger: ATGGGTAGACAGACTTCTAGACTTGGTCAACCCCCACCCACAAGGCAGGCAAATTAAGTCCCTGCAGGTGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035323.6 |
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| 3UTR TCA 72 bp | GAGCTTGAAGCCAGCCTGGGCTACACAAATAGACCTTaGCTTAAGAAAAAGGAAAAAGGGCGTGGTGGTGCA | + |
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Preference number: 3 (lower is better) Translates to: ELEASLGYTNRP*LKKKEKGRGGA Trigger: TGCACCACCACGCCCTTTTTCCTTTTTCTTAAGTCAAGGTCTATTTGTGTAGCCCAGGCTGGCTTCAAGCTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000035323.6 |
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| CDS-3UTR TCA 90 bp | CCCTCCCGGCCACCCACAGAGGTGAGTTCCGGTGTGTCACAGGCTCATTGGGGACAAGAGGGCCTCGTCTaGCTCACTGTCCGAGACCTC | + |
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Preference number: 4 (lower is better) Translates to: PSRPPTEVSSGVSQAHWGQEGLV*LTVRDL Trigger: GAGGTCTCGGACAGTGAGTCAGACGAGGCCCTCTTG...TCCCCAATGAGCCTGTGACACACCGGAACTCACCTCTGTGGGTGGCCGGGAGGG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035323.6 |
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| CDS-3UTR GCA 90 bp | CCCTCCCGGCCACCCACAGAGGTGAGTTCCGGTGTGTCACAGGCTCATTGGGGACTGTCTTGGCATAGTTaGGCAGCGCTCGGGCCAGCT | + |
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Preference number: 4 (lower is better) Translates to: PSRPPTEVSSGVSQAHWGLSWHS*AALGPA Trigger: AGCTGGCCCGAGCGCTGCGCAACTATGCCAAGACAG...TCCCCAATGAGCCTGTGACACACCGGAACTCACCTCTGTGGGTGGCCGGGAGGG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035323.6 |
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| CDS-3UTR CCA 90 bp | ACAGCGCCACCTGCTGGTGAGATGTCATGTGAGCTCACAGGACTCGCAAGAACTCTGGAGGCCAGGCCCTaGGGCCTCCAAGCTGGGGGC | + |
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Preference number: 4 (lower is better) Translates to: TAPPAGEMSCELTGLARTLEARP*GLQAGG Trigger: GCCCCCAGCTTGGAGGCCCCAGGGCCTGGCCTCCAG...AGTTCTTGCGAGTCCTGTGAGCTCACATGACATCTCACCAGCAGGTGGCGCTGT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035323.6 |
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| CDS-3UTR CCA 90 bp | GGGGGCTGTAGACAGCGCCACCTGCTGGTGAGATGTCATGTGAGCTCACAGGACAAGGAGCCCAGGGTCTaGCTGGTGAAGTCCTCTGGG | + |
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Preference number: 4 (lower is better) Translates to: GGCRQRHLLVRCHVSSQDKEPRV*LVKSSG Trigger: CCCAGAGGACTTCACCAGCCAGACCCTGGGCTCCTT...GTCCTGTGAGCTCACATGACATCTCACCAGCAGGTGGCGCTGTCTACAGCCCCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035323.6 |
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| CDS-3UTR CCA 90 bp | AAGAATAAAAGGCACCGGCCTTGCCACAGCCATACCTCTGCCACACATCCCCCTGAAGACGCCGGCACCTaGCTCCACCCACCACACGCA | + |
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Preference number: 4 (lower is better) Translates to: KNKRHRPCHSHTSATHPPEDAGT*LHPPHA Trigger: TGCGTGTGGTGGGTGGAGCCAGGTGCCGGCGTCTTC...AGGGGGATGTGTGGCAGAGGTATGGCTGTGGCAAGGCCGGTGCCTTTTATTCTT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000035323.6 |
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| CDS-3UTR CCA 90 bp | GGCCTTGCCACAGCCATACCTCTGCCACACATCCCCCTCAAACACAACATACAGGCTGGTGAAGTCCTCTaGGGGGTACACCTGGAGGCC | + |
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Preference number: 4 (lower is better) Translates to: GLATAIPLPHIPLKHNIQAGEVL*GVHLEA Trigger: GGCCTCCAGGTGTACCCCCCAGAGGACTTCACCAGC...CTGTATGTTGTGTTTGAGGGGGATGTGTGGCAGAGGTATGGCTGTGGCAAGGCC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000035323.6 |
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| CDS-3UTR CCA 90 bp | GGGGGCTGTAGACAGCGCCACCTGCTGGTGAGATGTCATGTGAGCTCACAGGACCTGATAGCACAGGGCTaGGGTACGGAGCATAAGCCA | + |
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Preference number: 4 (lower is better) Translates to: GGCRQRHLLVRCHVSSQDLIAQG*GTEHKP Trigger: TGGCTTATGCTCCGTACCCCAGCCCTGTGCTATCAG...GTCCTGTGAGCTCACATGACATCTCACCAGCAGGTGGCGCTGTCTACAGCCCCC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035323.6 |
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| CDS-3UTR CCA 90 bp | GGGGGCTGTAGACAGCGCCACCTGCTGGTGAGATGTCATGTGAGCTCACAGGACAACCCCAGCAAGAACTaGTACAGGCGCAGCTTCTTG | + |
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Preference number: 4 (lower is better) Translates to: GGCRQRHLLVRCHVSSQDNPSKN*YRRSFL Trigger: CAAGAAGCTGCGCCTGTACCAGTTCTTGCTGGGGTT...GTCCTGTGAGCTCACATGACATCTCACCAGCAGGTGGCGCTGTCTACAGCCCCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000035323.6 |
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| CDS-3UTR CCA 90 bp | AAGAATAAAAGGCACCGGCCTTGCCACAGCCATACCTCTGCCACACATCCCCCTTGCTTGGAGGAGAACTaGAAGACGCCGGCACCTGGC | + |
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Preference number: 4 (lower is better) Translates to: KNKRHRPCHSHTSATHPPCLEEN*KTPAPG Trigger: GCCAGGTGCCGGCGTCTTCCAGTTCTCCTCCAAGCA...AGGGGGATGTGTGGCAGAGGTATGGCTGTGGCAAGGCCGGTGCCTTTTATTCTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000035323.6 |
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| CDS-3UTR CCA 90 bp | AGAGTTTTAAGGGCCTCTTCATCGTCTGTTTCTCAGAGAGACGGAAGCCTGAGTCTCCAAGCTGGGGGCTaGGTCGAGGGTCCCCATGGG | + |
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Preference number: 4 (lower is better) Translates to: RVLRASSSSVSQRDGSLSLQAGG*VEGPHG Trigger: CCCATGGGGACCCTCGACCCAGCCCCCAGCTTGGAG...ACTCAGGCTTCCGTCTCTCTGAGAAACAGACGATGAAGAGGCCCTTAAAACTCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000035323.6 |
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| CDS-3UTR TCA 90 bp | TGGGTTCTGATTCTGCTGTGGATGCCCAAGACAAACCCACAGTTTGAGCCTACTGCTCGGGCCAGCTTCTaGTACGTCATGCGCTTGCGG | + |
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Preference number: 4 (lower is better) Translates to: WVLILLWMPKTNPQFEPTARASF*YVMRLR Trigger: CCGCAAGCGCATGACGTATCAGAAGCTGGCCCGAGC...AGTAGGCTCAAACTGTGGGTTTGTCTTGGGCATCCACAGCAGAATCAGAACCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035323.6 |
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| CDS-3UTR CCA 90 bp | ACAGCGCCACCTGCTGGTGAGATGTCATGTGAGCTCACAGGACTCGCAAGAACTGGATTTCGCCTGTCTTaGCATAGTTGCGCAGCGCTC | + |
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Preference number: 4 (lower is better) Translates to: TAPPAGEMSCELTGLARTGFRLS*HSCAAL Trigger: GAGCGCTGCGCAACTATGCCAAGACAGGCGAAATCC...AGTTCTTGCGAGTCCTGTGAGCTCACATGACATCTCACCAGCAGGTGGCGCTGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035323.6 |
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| CDS-3UTR GCA 90 bp | AGAGTTTTAAGGGCCTCTTCATCGTCTGTTTCTCAGAGAGACGGAAGCCTGAGTTCATGCGCTTGCGGTTaGCCTTCTGCTGGCCCCAGC | + |
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Preference number: 4 (lower is better) Translates to: RVLRASSSSVSQRDGSLSSCACG*PSAGPS Trigger: GCTGGGGCCAGCAGAAGGGCAACCGCAAGCGCATGA...ACTCAGGCTTCCGTCTCTCTGAGAAACAGACGATGAAGAGGCCCTTAAAACTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035323.6 |
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| 3UTR CAA 72 bp | TGCAGGGACTTAATTTGCCTGCCTTGTGGGTGGGGGTaGACCAAGTCTAGAAGTCTGTCTACCCATGGCGTG | + |
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Preference number: 4 (lower is better) Translates to: CRDLICLPCGWG*TKSRSLSTHGV Trigger: CACGCCATGGGTAGACAGACTTCTAGACTTGGTCAACCCCCACCCACAAGGCAGGCAAATTAAGTCCCTGCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035323.6 |
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| CDS-3UTR GCA 90 bp | TGGGTTCTGATTCTGCTGTGGATGCCCAAGACAAACCCACAGTTTGAGCCTACTGATACGTCATGCGCTTaGGGTTGCCCTTCTGCTGGC | + |
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Preference number: 4 (lower is better) Translates to: WVLILLWMPKTNPQFEPTDTSCA*GCPSAG Trigger: GCCAGCAGAAGGGCAACCGCAAGCGCATGACGTATC...AGTAGGCTCAAACTGTGGGTTTGTCTTGGGCATCCACAGCAGAATCAGAACCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035323.6 |
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| CDS-3UTR TCA 90 bp | CAACCTATAAGGTTCACTGAACCTCCCACCCTACCTTACCCAGCCATTCATCTCCTGAATCTGGGTAACTaGAGGGCTTGCAGCTGTCCA | + |
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Preference number: 4 (lower is better) Translates to: QPIRFTEPPTLPYPAIHLLNLGN*RACSCP Trigger: TGGACAGCTGCAAGCCCTTCAGTTACCCAGATTCAG...GAGATGAATGGCTGGGTAAGGTAGGGTGGGAGGTTCAGTGAACCTTATAGGTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035323.6 |
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| CDS-3UTR GCA 90 bp | TGGGTTCTGATTCTGCTGTGGATGCCCAAGACAAACCCACAGTTTGAGCCTACTGCTTCTGATACGTCATaGGCTTGCGGTTGCCCTTCT | + |
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Preference number: 4 (lower is better) Translates to: WVLILLWMPKTNPQFEPTASDTS*ACGCPS Trigger: AGAAGGGCAACCGCAAGCGCATGACGTATCAGAAGC...AGTAGGCTCAAACTGTGGGTTTGTCTTGGGCATCCACAGCAGAATCAGAACCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035323.6 |
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| CDS TCA 90 bp | GCAGCTGTCCAGGTCGTAGAAGACTCCTTCTGGGTACTGGCGGAGTaGGGACAGGGTCATCTCAGGCCTTGGAGACACTCCCTCCCCTAC | + |
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Preference number: 5 (lower is better) Translates to: AAVQVVEDSFWVLAE*GQGHLRPWRHSLPY Trigger: GTAGGGGAGGGAGTGTCTCCAAGGCCTGAGATGACCCTGTCCTCACTCCGCCAGTACCCAGAAGGAGTCTTCTACGACCTGGACAGCTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098483.9 |
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| CDS-3UTR CAA 90 bp | GGCCTTGCCACAGCCATACCTCTGCCACACATCCCCCTCAAACACAACATACAGTACAGGCGCAGCTTCTaGCGTGCACCTGCCTCAGAT | + |
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Preference number: 5 (lower is better) Translates to: GLATAIPLPHIPLKHNIQYRRSF*RAPASD Trigger: ATCTGAGGCAGGTGCACGCAAGAAGCTGCGCCTGTA...CTGTATGTTGTGTTTGAGGGGGATGTGTGGCAGAGGTATGGCTGTGGCAAGGCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035323.6 |
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| CDS-3UTR CAA 90 bp | CAACCTATAAGGTTCACTGAACCTCCCACCCTACCTTACCCAGCCATTCATCTCGTCATGCGCTTGCGGTaGCCCTTCTGCTGGCCCCAG | + |
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Preference number: 5 (lower is better) Translates to: QPIRFTEPPTLPYPAIHLVMRLR*PFCWPQ Trigger: CTGGGGCCAGCAGAAGGGCAACCGCAAGCGCATGAC...GAGATGAATGGCTGGGTAAGGTAGGGTGGGAGGTTCAGTGAACCTTATAGGTTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035323.6 |
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| CDS-3UTR CAA 90 bp | GCCCAACCTATAAGGTTCACTGAACCTCCCACCCTACCTTACCCAGCCATTCATACAGAGCTGAACAGTTaGGGAGTGGCTAAAGGCAGC | + |
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Preference number: 5 (lower is better) Translates to: AQPIRFTEPPTLPYPAIHTELNS*GVAKGS Trigger: GCTGCCTTTAGCCACTCCCAAACTGTTCAGCTCTGT...ATGAATGGCTGGGTAAGGTAGGGTGGGAGGTTCAGTGAACCTTATAGGTTGGGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035323.6 |
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| CDS-3UTR CAA 90 bp | CAACCTATAAGGTTCACTGAACCTCCCACCCTACCTTACCCAGCCATTCATCTCCGAGCCAACAACTCCTaGTGCTTGGAGGAGAACTGG | + |
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Preference number: 5 (lower is better) Translates to: QPIRFTEPPTLPYPAIHLRANNS*CLEENW Trigger: CCAGTTCTCCTCCAAGCACAAGGAGTTGTTGGCTCG...GAGATGAATGGCTGGGTAAGGTAGGGTGGGAGGTTCAGTGAACCTTATAGGTTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035323.6 |
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| CDS GCA 72 bp | CTCGGGCCAGCTTCTGATACGTCATGCGCTTGCGGTTaGCCTTCTGCTGGCCCCAGCGGCGAGCCAACAACT | + |
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Preference number: 6 (lower is better) Translates to: LGPASDTSCACG*PSAGPSGEPTT Trigger: AGTTGTTGGCTCGCCGCTGGGGCCAGCAGAAGGGCAACCGCAAGCGCATGACGTATCAGAAGCTGGCCCGAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000035323.6 ENSMUST00000098483.9 ENSMUST00000205506.2 |
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| CDS CCA 72 bp | CGCATGTCCCCGCGTAGGAGCAACCCCAGCAAGAACTaGTACAGGCGCAGCTTCTTGCGTGCACCTGCCTCA | + |
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Preference number: 6 (lower is better) Translates to: RMSPRRSNPSKN*YRRSFLRAPAS Trigger: TGAGGCAGGTGCACGCAAGAAGCTGCGCCTGTACCAGTTCTTGCTGGGGTTGCTCCTACGCGGGGACATGCG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000035323.6 ENSMUST00000098483.9 ENSMUST00000205506.2 |
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| CDS TCA 72 bp | CAGGTCGTAGAAGACTCCTTCTGGGTACTGGCGGAGTaGGGACAGGGTCATCTCAGGCCTTGGAGACACTCC | + |
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Preference number: 6 (lower is better) Translates to: QVVEDSFWVLAE*GQGHLRPWRHS Trigger: GGAGTGTCTCCAAGGCCTGAGATGACCCTGTCCTCACTCCGCCAGTACCCAGAAGGAGTCTTCTACGACCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098483.9 |
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| CDS CAA 72 bp | GGTACTGGCGGAGTGAGGACAGGGTCATCTCAGGCCTaGGAGACACTCCCTCCCCTACCAAACAGCTTAAGT | + |
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Preference number: 6 (lower is better) Translates to: GTGGVRTGSSQA*ETLPPLPNSLS Trigger: ACTTAAGCTGTTTGGTAGGGGAGGGAGTGTCTCCAAGGCCTGAGATGACCCTGTCCTCACTCCGCCAGTACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098483.9 |
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| CDS CAA 72 bp | GGGGTTAGGACCATGGCTATAACAGAGCTGAACAGTTaGGGAGTGGCTAAAGGCAGCAGTAGCAGGATCGAA | + |
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Preference number: 6 (lower is better) Translates to: GVRTMAITELNS*GVAKGSSSRIE Trigger: TTCGATCCTGCTACTGCTGCCTTTAGCCACTCCCAAACTGTTCAGCTCTGTTATAGCCATGGTCCTAACCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000035323.6 ENSMUST00000098483.9 ENSMUST00000205506.2 |
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| CDS CAA 90 bp | ATAGGTGGAGGGGTTAGGACCATGGCTATAACAGAGCTGAACAGTTaGGGAGTGGCTAAAGGCAGCAGTAGCAGGATCGAAGGCTTCATA | + |
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Preference number: 6 (lower is better) Translates to: IGGGVRTMAITELNS*GVAKGSSSRIEGFI Trigger: TATGAAGCCTTCGATCCTGCTACTGCTGCCTTTAGCCACTCCCAAACTGTTCAGCTCTGTTATAGCCATGGTCCTAACCCCTCCACCTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000035323.6 ENSMUST00000098483.9 ENSMUST00000205506.2 |
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