RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SPI1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000002111

Ensembl transcript IDs: ENSMUST00000002180.8, ENSMUST00000132741.3, ENSMUST00000169852.2

Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GCGGGCCAGGCCGGGCATGGGAGGGCGAGGCCGGGCCCCCAGTCCTaGCTCGGCCCTGGGAATGTCCTCCCTGTGTCCGGGCCGGGCGAC +
Preference number: 1 (lower is better)
Translates to: AGQAGHGRARPGPQS*LGPGNVLPVSGPGD
Trigger: GTCGCCCGGCCCGGACACAGGGAGGACATTCCCAGGGCCGAGGCAGGACTGGGGGCCCGGCCTCGCCCTCCCATGCCCGGCCTGGCCCGC
79% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002180.8
3UTR CCA 90 bp GAGGTCCGAGGCCCAGGCGGCCCTTGGAGCGGGCTAGAGTCCTGGTaGGAGGCAAAGCGGGTGGGGCGGGCCAGGCCGGGCATGGGAGGG +
Preference number: 1 (lower is better)
Translates to: EVRGPGGPWSGLESW*EAKRVGRARPGMGG
Trigger: CCCTCCCATGCCCGGCCTGGCCCGCCCCACCCGCTTTGCCTCCCACCAGGACTCTAGCCCGCTCCAAGGGCCGCCTGGGCCTCGGACCTC
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002180.8
3UTR CCA 90 bp GTTGAGGTCCGAGGCCCAGGCGGCCCTTGGAGCGGGCTAGAGTCCTaGTGGGAGGCAAAGCGGGTGGGGCGGGCCAGGCCGGGCATGGGA +
Preference number: 1 (lower is better)
Translates to: VEVRGPGGPWSGLES*WEAKRVGRARPGMG
Trigger: TCCCATGCCCGGCCTGGCCCGCCCCACCCGCTTTGCCTCCCACCAGGACTCTAGCCCGCTCCAAGGGCCGCCTGGGCCTCGGACCTCAAC
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002180.8
3UTR TCA 90 bp CCAGCGCCAGACTCCCAAGGAAGCACCGTGGCCACTAAGCCAGGCTaGCCCTCGGTTGAGGTCCGAGGCCCAGGCGGCCCTTGGAGCGGG +
Preference number: 1 (lower is better)
Translates to: PAPDSQGSTVATKPG*PSVEVRGPGGPWSG
Trigger: CCCGCTCCAAGGGCCGCCTGGGCCTCGGACCTCAACCGAGGGTCAGCCTGGCTTAGTGGCCACGGTGCTTCCTTGGGAGTCTGGCGCTGG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002180.8
3UTR CCA 72 bp GGCCCAGGCGGCCCTTGGAGCGGGCTAGAGTCCTGGTaGGAGGCAAAGCGGGTGGGGCGGGCCAGGCCGGGC +
Preference number: 3 (lower is better)
Translates to: GPGGPWSGLESW*EAKRVGRARPG
Trigger: GCCCGGCCTGGCCCGCCCCACCCGCTTTGCCTCCCACCAGGACTCTAGCCCGCTCCAAGGGCCGCCTGGGCC
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002180.8
3UTR GCA 72 bp GCCGGGCATGGGAGGGCGAGGCCGGGCCCCCAGTCCTaGCTCGGCCCTGGGAATGTCCTCCCTGTGTCCGGG +
Preference number: 3 (lower is better)
Translates to: AGHGRARPGPQS*LGPGNVLPVSG
Trigger: CCCGGACACAGGGAGGACATTCCCAGGGCCGAGGCAGGACTGGGGGCCCGGCCTCGCCCTCCCATGCCCGGC
76% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002180.8
3UTR CCA 72 bp CTCCCTGTGTCCGGGCCGGGCGACGGGTTAATGCTATaGCCGGCGGGGTCCAGGAGCCTGGCGGTCTCTGCG +
Preference number: 3 (lower is better)
Translates to: LPVSGPGDGLML*PAGSRSLAVSA
Trigger: CGCAGAGACCGCCAGGCTCCTGGACCCCGCCGGCCATAGCATTAACCCGTCGCCCGGCCCGGACACAGGGAG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002180.8
3UTR CCA 72 bp AAAAGGTGCCAGCGCCAGACTCCCAAGGAAGCACCGTaGCCACTAAGCCAGGCTGACCCTCGGTTGAGGTCC +
Preference number: 3 (lower is better)
Translates to: KRCQRQTPKEAP*PLSQADPRLRS
Trigger: GGACCTCAACCGAGGGTCAGCCTGGCTTAGTGGCCACGGTGCTTCCTTGGGAGTCTGGCGCTGGCACCTTTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002180.8
CDS-3UTR GCA 90 bp CCCAGTCCTGCCTCGGCCCTGGGAATGTCCTCCCTGTGTCCGGGCCGGGCGACGGGTTGCCCTTCTGGATaGCCCAGCGGTGCGCCAGCG +
Preference number: 4 (lower is better)
Translates to: PSPASALGMSSLCPGRATGCPSG*PSGAPA
Trigger: CGCTGGCGCACCGCTGGGGCATCCAGAAGGGCAACC...CGTCGCCCGGCCCGGACACAGGGAGGACATTCCCAGGGCCGAGGCAGGACTGGG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002180.8
CDS-3UTR TCA 90 bp TCCGGGCCGGGCGACGGGTTAATGCTATGGCCGGCGGGGTCCAGGAGCCTGGCGACCCTCCTCCTCATCTaGGCTCTGCTGGTGGGCTGG +
Preference number: 4 (lower is better)
Translates to: SGPGDGLMLWPAGSRSLATLLLI*ALLVGW
Trigger: CCAGCCCACCAGCAGAGCTCAGATGAGGAGGAGGGT...CGCCAGGCTCCTGGACCCCGCCGGCCATAGCATTAACCCGTCGCCCGGCCCGGA
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002180.8
CDS-3UTR GCA 90 bp CCCAGTCCTGCCTCGGCCCTGGGAATGTCCTCCCTGTGTCCGGGCCGGGCGACGCCTTCATGTCGCCGCTaGGCAGCAGGTCCAGCAGGA +
Preference number: 4 (lower is better)
Translates to: PSPASALGMSSLCPGRATPSCRR*AAGPAG
Trigger: TCCTGCTGGACCTGCTGCGCAGCGGCGACATGAAGG...CGTCGCCCGGCCCGGACACAGGGAGGACATTCCCAGGGCCGAGGCAGGACTGGG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002180.8
CDS-3UTR GCA 90 bp CCCCCAGTCCTGCCTCGGCCCTGGGAATGTCCTCCCTGTGTCCGGGCCGGGCGACTGTCTTGCCGTAGTTaGGCAGCGCGCGCGCCATCT +
Preference number: 4 (lower is better)
Translates to: PPVLPRPWECPPCVRAGRLSCRS*AARAPS
Trigger: AGATGGCGCGCGCGCTGCGCAACTACGGCAAGACAG...TCGCCCGGCCCGGACACAGGGAGGACATTCCCAGGGCCGAGGCAGGACTGGGGG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002180.8
CDS-3UTR GCA 90 bp CCCCAGTCCTGCCTCGGCCCTGGGAATGTCCTCCCTGTGTCCGGGCCGGGCGACTCACCTCGCCTGTCTTaGCGTAGTTGCGCAGCGCGC +
Preference number: 4 (lower is better)
Translates to: PQSCLGPGNVLPVSGPGDSPRLS*RSCAAR
Trigger: GCGCGCTGCGCAACTACGGCAAGACAGGCGAGGTGA...GTCGCCCGGCCCGGACACAGGGAGGACATTCCCAGGGCCGAGGCAGGACTGGGG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002180.8
CDS-3UTR GCA 90 bp CCCAGTCCTGCCTCGGCCCTGGGAATGTCCTCCCTGTGTCCGGGCCGGGCGACGTGTAGCTGCGGGGGCTaGACACTCTGCAGCTCTGTG +
Preference number: 4 (lower is better)
Translates to: PSPASALGMSSLCPGRATCSCGG*TLCSSV
Trigger: CACAGAGCTGCAGAGTGTGCAGCCCCCGCAGCTACA...CGTCGCCCGGCCCGGACACAGGGAGGACATTCCCAGGGCCGAGGCAGGACTGGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002180.8
CDS-3UTR CCA 90 bp CCGGGCGACGGGTTAATGCTATGGCCGGCGGGGTCCAGGAGCCTGGCGGTCTCTTTGCGGTTGCCCTTCTaGATGCCCCAGCGGTGCGCC +
Preference number: 4 (lower is better)
Translates to: PGDGLMLWPAGSRSLAVSLRLPF*MPQRCA
Trigger: GGCGCACCGCTGGGGCATCCAGAAGGGCAACCGCAA...AGAGACCGCCAGGCTCCTGGACCCCGCCGGCCATAGCATTAACCCGTCGCCCGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002180.8
CDS-3UTR GCA 90 bp GGGAGGGCGAGGCCGGGCCCCCAGTCCTGCCTCGGCCCTGGGAATGTCCTCCCTTCATCTTCTTGCGGTTaGCCTTCTGGATGCCCCAGC +
Preference number: 4 (lower is better)
Translates to: GRARPGPQSCLGPGNVLPSSSCG*PSGCPS
Trigger: GCTGGGGCATCCAGAAGGGCAACCGCAAGAAGATGA...AGGGAGGACATTCCCAGGGCCGAGGCAGGACTGGGGGCCCGGCCTCGCCCTCCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002180.8
CDS-3UTR TCA 90 bp GAGCGGGCTAGAGTCCTGGTGGGAGGCAAAGCGGGTGGGGCGGGCCAGGCCGGGCACTCTGCAGCTCTGTaGAGTGGTTCTCAGGGAAGT +
Preference number: 4 (lower is better)
Translates to: ERARVLVGGKAGGAGQAGHSAAL*SGSQGS
Trigger: ACTTCCCTGAGAACCACTTCACAGAGCTGCAGAGTG...CCCGGCCTGGCCCGCCCCACCCGCTTTGCCTCCCACCAGGACTCTAGCCCGCTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002180.8
CDS-3UTR GCA 90 bp CCTGTGTCCGGGCCGGGCGACGGGTTAATGCTATGGCCGGCGGGGTCCAGGAGCGGGGGCTGCACACTCTaGAGCTCTGTGAAGTGGTTC +
Preference number: 4 (lower is better)
Translates to: PVSGPGDGLMLWPAGSRSGGCTL*SSVKWF
Trigger: GAACCACTTCACAGAGCTGCAGAGTGTGCAGCCCCC...GCTCCTGGACCCCGCCGGCCATAGCATTAACCCGTCGCCCGGCCCGGACACAGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002180.8
CDS-3UTR GCA 90 bp CCCTGTGTCCGGGCCGGGCGACGGGTTAATGCTATGGCCGGCGGGGTCCAGGAGGCCAGCGCCTCCTTGTaGTTGGACGAGAACTGGAAG +
Preference number: 4 (lower is better)
Translates to: PCVRAGRRVNAMAGGVQEASASL*LDENWK
Trigger: CTTCCAGTTCTCGTCCAAGCACAAGGAGGCGCTGGC...CTCCTGGACCCCGCCGGCCATAGCATTAACCCGTCGCCCGGCCCGGACACAGGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002180.8
CDS-3UTR CCA 90 bp CAGTCCTGCCTCGGCCCTGGGAATGTCCTCCCTGTGTCCGGGCCGGGCGACGGGTCATCTGAGCTCTGCTaGTGGGCTGGGGACAAGGTT +
Preference number: 4 (lower is better)
Translates to: QSCLGPGNVLPVSGPGDGSSELC*WAGDKV
Trigger: AACCTTGTCCCCAGCCCACCAGCAGAGCTCAGATGA...CCCGTCGCCCGGCCCGGACACAGGGAGGACATTCCCAGGGCCGAGGCAGGACTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002180.8
CDS-3UTR GCA 90 bp AGCCAGGCTGACCCTCGGTTGAGGTCCGAGGCCCAGGCGGCCCTTGGAGCGGGCGTTGTGGACATGGTGTaGGGAGAAATCCCAGTAGTG +
Preference number: 4 (lower is better)
Translates to: SQADPRLRSEAQAALGAGVVDMV*GEIPVV
Trigger: CACTACTGGGATTTCTCCGCACACCATGTCCACAAC...GCCCGCTCCAAGGGCCGCCTGGGCCTCGGACCTCAACCGAGGGTCAGCCTGGCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002180.8
CDS-3UTR GCA 90 bp CCCTGTGTCCGGGCCGGGCGACGGGTTAATGCTATGGCCGGCGGGGTCCAGGAGGGAGTATCGAGGACGTaGATCTGTTCCAGCTCCATG +
Preference number: 4 (lower is better)
Translates to: PCVRAGRRVNAMAGGVQEGVSRT*ICSSSM
Trigger: CATGGAGCTGGAACAGATGCACGTCCTCGATACTCC...CTCCTGGACCCCGCCGGCCATAGCATTAACCCGTCGCCCGGCCCGGACACAGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002180.8
CDS-3UTR CCA 90 bp CCTGTGTCCGGGCCGGGCGACGGGTTAATGCTATGGCCGGCGGGGTCCAGGAGCAGGTCCAGCAGGAACTaGTACAGGCGAATCTTTTTC +
Preference number: 4 (lower is better)
Translates to: PVSGPGDGLMLWPAGSRSRSSRN*YRRIFF
Trigger: GAAAAAGATTCGCCTGTACCAGTTCCTGCTGGACCT...GCTCCTGGACCCCGCCGGCCATAGCATTAACCCGTCGCCCGGCCCGGACACAGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002180.8
CDS-3UTR CCA 90 bp TCGGTTGAGGTCCGAGGCCCAGGCGGCCCTTGGAGCGGGCTAGAGTCCTGGTGGTGCTTGGACGAGAACTaGAAGGTACCTTTGTCCTTG +
Preference number: 4 (lower is better)
Translates to: SVEVRGPGGPWSGLESWWCLDEN*KVPLSL
Trigger: CAAGGACAAAGGTACCTTCCAGTTCTCGTCCAAGCA...CCACCAGGACTCTAGCCCGCTCCAAGGGCCGCCTGGGCCTCGGACCTCAACCGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002180.8
CDS-3UTR CCA 90 bp AAAGCATTCAATATACAAAAAGGTGCCAGCGCCAGACTCCCAAGGAAGCACCGTCCCGTGCAGAAGACCTaGCCCAGGCTCCAAGCCATC +
Preference number: 4 (lower is better)
Translates to: KAFNIQKGASARLPRKHRPVQKT*PRLQAI
Trigger: GATGGCTTGGAGCCTGGGCCAGGTCTTCTGCACGGG...ACGGTGCTTCCTTGGGAGTCTGGCGCTGGCACCTTTTTGTATATTGAATGCTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002180.8
CDS-3UTR GCA 90 bp AAAGCATTCAATATACAAAAAGGTGCCAGCGCCAGACTCCCAAGGAAGCACCGTTCCTCATCTGAGCTCTaGTGGTGGGCTGGGGACAAG +
Preference number: 4 (lower is better)
Translates to: KAFNIQKGASARLPRKHRSSSEL*WWAGDK
Trigger: CTTGTCCCCAGCCCACCAGCAGAGCTCAGATGAGGA...ACGGTGCTTCCTTGGGAGTCTGGCGCTGGCACCTTTTTGTATATTGAATGCTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002180.8
CDS-3UTR CCA 90 bp TTTAAAAAGCATTCAATATACAAAAAGGTGCCAGCGCCAGACTCCCAAGGAAGCTGTGGGGTGGCACCATaGGAGTATCGAGGACGTGCA +
Preference number: 4 (lower is better)
Translates to: FKKHSIYKKVPAPDSQGSCGVAP*EYRGRA
Trigger: TGCACGTCCTCGATACTCCCATGGTGCCACCCCACA...GCTTCCTTGGGAGTCTGGCGCTGGCACCTTTTTGTATATTGAATGCTTTTTAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000002180.8
CDS-3UTR CAA 90 bp CGGGCCCCCAGTCCTGCCTCGGCCCTGGGAATGTCCTCCCTGTGTCCGGGCCGGGTCATCTTCTTGCGGTaGCCCTTCTGGATGCCCCAG +
Preference number: 5 (lower is better)
Translates to: RAPSPASALGMSSLCPGRVIFLR*PFWMPQ
Trigger: CTGGGGCATCCAGAAGGGCAACCGCAAGAAGATGAC...CCGGCCCGGACACAGGGAGGACATTCCCAGGGCCGAGGCAGGACTGGGGGCCCG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002180.8
CDS-3UTR CAA 90 bp AGCCAGGCTGACCCTCGGTTGAGGTCCGAGGCCCAGGCGGCCCTTGGAGCGGGCAGGCGAATCTTTTTCTaGCTGCCTGTCTCCCCGTGC +
Preference number: 5 (lower is better)
Translates to: SQADPRLRSEAQAALGAGRRIFF*LPVSPC
Trigger: GCACGGGGAGACAGGCAGCAAGAAAAAGATTCGCCT...GCCCGCTCCAAGGGCCGCCTGGGCCTCGGACCTCAACCGAGGGTCAGCCTGGCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002180.8
CDS-3UTR CAA 90 bp GTCCTGCCTCGGCCCTGGGAATGTCCTCCCTGTGTCCGGGCCGGGCGACGGGTTGGCTGGGGACAAGGTTaGATAAGGGAAGCACATCCG +
Preference number: 5 (lower is better)
Translates to: VLPRPWECPPCVRAGRRVGWGQG*IREAHP
Trigger: CGGATGTGCTTCCCTTATCAAACCTTGTCCCCAGCC...AACCCGTCGCCCGGCCCGGACACAGGGAGGACATTCCCAGGGCCGAGGCAGGAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002180.8
CDS-3UTR CAA 90 bp GTCCTGCCTCGGCCCTGGGAATGTCCTCCCTGTGTCCGGGCCGGGCGACGGGTTAACTGGAAGGTACCTTaGTCCTTGTCCACCCACCAG +
Preference number: 5 (lower is better)
Translates to: VLPRPWECPPCVRAGRRVNWKVP*SLSTHQ
Trigger: CTGGTGGGTGGACAAGGACAAAGGTACCTTCCAGTT...AACCCGTCGCCCGGCCCGGACACAGGGAGGACATTCCCAGGGCCGAGGCAGGAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002180.8
CDS CCA 90 bp CATCCGGGGCATGTAGGAAACCTGGTGACTGAGGCCGGTGTGGGGTaGCACCATGGGAGTATCGAGGACGTGCATCTGTTCCAGCTCCAT +
Preference number: 5 (lower is better)
Translates to: HPGHVGNLVTEAGVG*HHGSIEDVHLFQLH
Trigger: ATGGAGCTGGAACAGATGCACGTCCTCGATACTCCCATGGTGCCACCCCACACCGGCCTCAGTCACCAGGTTTCCTACATGCCCCGGATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002180.8
ENSMUST00000169852.2
CDS CCA 90 bp AGCTGCTGTAGCTGCGGGGGCTGCACACTCTGCAGCTCTGTGAAGTaGTTCTCAGGGAAGTTCTCAAACTCGTTGTTGTGGACATGGTGT +
Preference number: 5 (lower is better)
Translates to: SCCSCGGCTLCSSVK*FSGKFSNSLLWTWC
Trigger: ACACCATGTCCACAACAACGAGTTTGAGAACTTCCCTGAGAACCACTTCACAGAGCTGCAGAGTGTGCAGCCCCCGCAGCTACAGCAGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000002180.8
ENSMUST00000169852.2
CDS TCA 90 bp GATAGAGCTGCTGTAGCTGCGGGGGCTGCACACTCTGCAGCTCTGTaGAGTGGTTCTCAGGGAAGTTCTCAAACTCGTTGTTGTGGACAT +
Preference number: 5 (lower is better)
Translates to: DRAAVAAGAAHSAAL*SGSQGSSQTRCCGH
Trigger: ATGTCCACAACAACGAGTTTGAGAACTTCCCTGAGAACCACTTCACAGAGCTGCAGAGTGTGCAGCCCCCGCAGCTACAGCAGCTCTATC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000002180.8
ENSMUST00000169852.2
CDS GCA 90 bp GTGCGGAGAAATCCCAGTAGTGATCGCTATGGCTTTCTCCATCGCTaGCCACGAAGGAGTAGTAGTCATGCATTGGACGTTGGTATAGCT +
Preference number: 5 (lower is better)
Translates to: VRRNPSSDRYGFLHR*PRRSSSHALDVGIA
Trigger: AGCTATACCAACGTCCAATGCATGACTACTACTCCTTCGTGGGCAGCGATGGAGAAAGCCATAGCGATCACTACTGGGATTTCTCCGCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002180.8
ENSMUST00000132741.3
ENSMUST00000169852.2
CDS GCA 90 bp GTGGTTCTCAGGGAAGTTCTCAAACTCGTTGTTGTGGACATGGTGTaGGGAGAAATCCCAGTAGTGATCGCTATGGCTTTCTCCATCGCT +
Preference number: 5 (lower is better)
Translates to: VVLREVLKLVVVDMV*GEIPVVIAMAFSIA
Trigger: AGCGATGGAGAAAGCCATAGCGATCACTACTGGGATTTCTCCGCACACCATGTCCACAACAACGAGTTTGAGAACTTCCCTGAGAACCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002180.8
ENSMUST00000169852.2
CDS CCA 72 bp CATGTAGGAAACCTGGTGACTGAGGCCGGTGTGGGGTaGCACCATGGGAGTATCGAGGACGTGCATCTGTTC +
Preference number: 6 (lower is better)
Translates to: HVGNLVTEAGVG*HHGSIEDVHLF
Trigger: GAACAGATGCACGTCCTCGATACTCCCATGGTGCCACCCCACACCGGCCTCAGTCACCAGGTTTCCTACATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002180.8
ENSMUST00000169852.2
CDS TCA 72 bp GCTGTAGCTGCGGGGGCTGCACACTCTGCAGCTCTGTaGAGTGGTTCTCAGGGAAGTTCTCAAACTCGTTGT +
Preference number: 6 (lower is better)
Translates to: AVAAGAAHSAAL*SGSQGSSQTRC
Trigger: ACAACGAGTTTGAGAACTTCCCTGAGAACCACTTCACAGAGCTGCAGAGTGTGCAGCCCCCGCAGCTACAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000002180.8
ENSMUST00000169852.2
CDS GCA 72 bp AGGGAAGTTCTCAAACTCGTTGTTGTGGACATGGTGTaGGGAGAAATCCCAGTAGTGATCGCTATGGCTTTC +
Preference number: 6 (lower is better)
Translates to: REVLKLVVVDMV*GEIPVVIAMAF
Trigger: GAAAGCCATAGCGATCACTACTGGGATTTCTCCGCACACCATGTCCACAACAACGAGTTTGAGAACTTCCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002180.8
ENSMUST00000132741.3
ENSMUST00000169852.2