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Pregenerated sensors for SPG11 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000033396

Ensembl transcript IDs: ENSMUST00000036450.8

Found 374 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ATGTATCACGTGTTCCTTAACTGTGTAAATAAGATTAAATTGCTTTaGAACTGGAACCTGCAGGTACAGGCGTTCTTTAACCACTATTGT +
Preference number: 1 (lower is better)
Translates to: MYHVFLNCVNKIKLL*NWNLQVQAFFNHYC
Trigger: ACAATAGTGGTTAAAGAACGCCTGTACCTGCAGGTTCCAGTTTCAAAGCAATTTAATCTTATTTACACAGTTAAGGAACACGTGATACAT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
3UTR-3UTR CCA 90 bp AGAAGCCACTCTAACAAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCACGACTAGTGCAGTATaGTATATTTCTGGGCTTTTC +
Preference number: 2 (lower is better)
Translates to: RSHSNKTLLISILIFPPFTTSAV*YISGLF
Trigger: GAAAAGCCCAGAAATATACCATACTGCACTAGTCGT...GAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTTGTTAGAGTGGCTTCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
3UTR-3UTR CCA 90 bp AAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCCCTACAGCCACAAACAGTATGGTATATTTCTaGGCTTTTCAACTCAAATGG +
Preference number: 2 (lower is better)
Translates to: KTLLISILIFPPFPTATNSMVYF*AFQLKW
Trigger: CCATTTGAGTTGAAAAGCCCAGAAATATACCATACT...GTTTGTGGCTGTAGGGAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
3UTR TCA 72 bp GTGTTCCTTAACTGTGTAAATAAGATTAAATTGCTTTaGAACTGGAACCTGCAGGTACAGGCGTTCTTTAAC +
Preference number: 3 (lower is better)
Translates to: VFLNCVNKIKLL*NWNLQVQAFFN
Trigger: GTTAAAGAACGCCTGTACCTGCAGGTTCCAGTTTCAAAGCAATTTAATCTTATTTACACAGTTAAGGAACAC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR GCA 90 bp GTTCCCTACAGCCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCACTGGGAGGCAGCAGCTaGTCCCACCCCTGCTGCCCG +
Preference number: 4 (lower is better)
Translates to: VPYSHKRLVQYGIFLGFSLGGSS*SHPCCP
Trigger: CGGGCAGCAGGGGTGGGAGCAGCTGCTGCCTCCCAG...TGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGGCTGTAGGGAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CCA 90 bp CACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGGGGTCCGCACCAGCAGCATaGGCAGGACCCGCTCCATGG +
Preference number: 4 (lower is better)
Translates to: HKRLVQYGIFLGFSTQMGSAPAA*AGPAPW
Trigger: CCATGGAGCGGGTCCTGCCCATGCTGCTGGTGCGGA...CCCCATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR GCA 90 bp GTTCCCTACAGCCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCATCAGGAGCTCTGTGGTaGAAGACAGCTCCCCGTGGG +
Preference number: 4 (lower is better)
Translates to: VPYSHKRLVQYGIFLGFSSGALW*KTAPRG
Trigger: CCCACGGGGAGCTGTCTTGCACCACAGAGCTCCTGA...TGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGGCTGTAGGGAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CCA 90 bp CACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGGGGCTGCCTAAAGGGTCCTaGGAGGCAGCAGCTGCTCCC +
Preference number: 4 (lower is better)
Translates to: HKRLVQYGIFLGFSTQMGLPKGS*EAAAAP
Trigger: GGGAGCAGCTGCTGCCTCCCAGGACCCTTTAGGCAG...CCCCATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR GCA 90 bp AAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCCCTACAGCCACAAACAGCTGCTCCCACCCCTaGTGCCCGGCGCCAAGGAAA +
Preference number: 4 (lower is better)
Translates to: KTLLISILIFPPFPTATNSCSHP*CPAPRK
Trigger: TTTCCTTGGCGCCGGGCAGCAGGGGTGGGAGCAGCT...GTTTGTGGCTGTAGGGAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR GCA 90 bp CACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGGGGTCAGAGGGGGCCACTTaGTCTGCTGAGGTGACTCGG +
Preference number: 4 (lower is better)
Translates to: HKRLVQYGIFLGFSTQMGSEGAT*SAEVTR
Trigger: CCGAGTCACCTCAGCAGAGCAAGTGGCCCCCTCTGA...CCCCATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR TCA 90 bp GTTCCCTACAGCCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCACCCCAACCGTTGAGATaGCAAAGGGAGTCCACAGTG +
Preference number: 4 (lower is better)
Translates to: VPYSHKRLVQYGIFLGFSPQPLR*QRESTV
Trigger: CACTGTGGACTCCCTTTGTCATCTCAACGGTTGGGG...TGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGGCTGTAGGGAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR TCA 90 bp CAAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCCCTACAGCCACAAAAGTGGCCAGCCAGAGTaGGCAGCAGATGGCGCTCCT +
Preference number: 4 (lower is better)
Translates to: QNTSDLNTNFSSVPYSHKSGQPE*AADGAP
Trigger: AGGAGCGCCATCTGCTGCTCACTCTGGCTGGCCACT...TTTGTGGCTGTAGGGAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR TCA 90 bp CAGCCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATCATCGGTCAGGCCGCTaGGAAGCCAAGATTGCTCGG +
Preference number: 4 (lower is better)
Translates to: QPQTTSAVWYISGLFNSNHRSGR*EAKIAR
Trigger: CCGAGCAATCTTGGCTTCTCAGCGGCCTGACCGATG...ATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR TCA 90 bp CACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGGGGCCAAGTGGTTATCTGTaGGCATGCGGGCGGCTTGCA +
Preference number: 4 (lower is better)
Translates to: HKRLVQYGIFLGFSTQMGPSGYL*ACGRLA
Trigger: TGCAAGCCGCCCGCATGCTCACAGATAACCACTTGG...CCCCATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR GCA 90 bp CAGCCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATAAAGCACTTGGAGACTaGCCGCAGCCGTCAGGCTCC +
Preference number: 4 (lower is better)
Translates to: QPQTTSAVWYISGLFNSNKALGD*PQPSGS
Trigger: GGAGCCTGACGGCTGCGGGCAGTCTCCAAGTGCTTT...ATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR GCA 90 bp CACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGGGGCCTGGACCAGAAAGGTaGCAAAGGCAAACGACGGGC +
Preference number: 4 (lower is better)
Translates to: HKRLVQYGIFLGFSTQMGPGPER*QRQTTG
Trigger: GCCCGTCGTTTGCCTTTGGCACCTTTCTGGTCCAGG...CCCCATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR GCA 90 bp CCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGGGTTCCCCAGCTCATACTaGGTCTCACACTGCTGCGGC +
Preference number: 4 (lower is better)
Translates to: PQTTSAVWYISGLFNSNGFPSSY*VSHCCG
Trigger: GCCGCAGCAGTGTGAGACGCAGTATGAGCTGGGGAA...CCCATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR GCA 90 bp AAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCCCTACAGCCACAAACCCCTGTTCAGCAGGGTaGTCACTCACCTCGGGGGCT +
Preference number: 4 (lower is better)
Translates to: KTLLISILIFPPFPTATNPCSAG*SLTSGA
Trigger: AGCCCCCGAGGTGAGTGAGCACCCTGCTGAACAGGG...GTTTGTGGCTGTAGGGAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CCA 90 bp CCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGGGCTGGCTGACACCCCCTaGAGCATACATGGTGGTAGC +
Preference number: 4 (lower is better)
Translates to: PQTTSAVWYISGLFNSNGLADTP*SIHGGS
Trigger: GCTACCACCATGTATGCTCCAGGGGGTGTCAGCCAG...CCCATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CCA 90 bp GTTCCCTACAGCCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCATCACCAGGTCAGGGCTaGAAAAGTGTGGGAGCTGAC +
Preference number: 4 (lower is better)
Translates to: VPYSHKRLVQYGIFLGFSSPGQG*KSVGAD
Trigger: GTCAGCTCCCACACTTTTCCAGCCCTGACCTGGTGA...TGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGGCTGTAGGGAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CCA 90 bp CACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGGGGGACAGGAGACAACACTaGCACCCTGCACACACGAGG +
Preference number: 4 (lower is better)
Translates to: HKRLVQYGIFLGFSTQMGDRRQH*HPAHTR
Trigger: CCTCGTGTGTGCAGGGTGCCAGTGTTGTCTCCTGTC...CCCCATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CCA 90 bp CAGCCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATTCTTGGGCAAGCCAGTaGCCAGCCAGAGTGAGCAGC +
Preference number: 4 (lower is better)
Translates to: QPQTTSAVWYISGLFNSNSWASQ*PARVSS
Trigger: GCTGCTCACTCTGGCTGGCCACTGGCTTGCCCAAGA...ATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CCA 90 bp CAAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCCCTACAGCCACAAAGGAACCGGCTCTTCTTaGGCAAGCCAGTGGCCAGCC +
Preference number: 4 (lower is better)
Translates to: QNTSDLNTNFSSVPYSHKGTGSS*ASQWPA
Trigger: GGCTGGCCACTGGCTTGCCCAAGAAGAGCCGGTTCC...TTTGTGGCTGTAGGGAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CCA 90 bp CACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGGGGCAAGACAGCTCCCCGTaGGGGACAGAGGGAATCTTG +
Preference number: 4 (lower is better)
Translates to: HKRLVQYGIFLGFSTQMGQDSSP*GTEGIL
Trigger: CAAGATTCCCTCTGTCCCCCACGGGGAGCTGTCTTG...CCCCATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CCA 90 bp GTTCCCTACAGCCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAGTGAAGGTAAAGCAGTaGTGGGCCAGGATCAGGAGC +
Preference number: 4 (lower is better)
Translates to: VPYSHKRLVQYGIFLGFSVKVKQ*WARIRS
Trigger: GCTCCTGATCCTGGCCCACCACTGCTTTACCTTCAC...TGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGGCTGTAGGGAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR TCA 90 bp CAAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCCCTACAGCCACAAAAGTCATGGCGAGCCGTaGGGTGTCTCCACAGGGCTT +
Preference number: 4 (lower is better)
Translates to: QNTSDLNTNFSSVPYSHKSHGEP*GVSTGL
Trigger: AAGCCCTGTGGAGACACCTCACGGCTCGCCATGACT...TTTGTGGCTGTAGGGAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR TCA 90 bp CCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGGGGAGGGCACGGATCTCTaGGTGCAAGTCTTCCATGGT +
Preference number: 4 (lower is better)
Translates to: PQTTSAVWYISGLFNSNGEGTDL*VQVFHG
Trigger: ACCATGGAAGACTTGCACTCAGAGATCCGTGCCCTC...CCCATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR GCA 90 bp CACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGGGGCAGTTGGATGCAGGCTaGTGCCTCGTGATTCTCTCC +
Preference number: 4 (lower is better)
Translates to: HKRLVQYGIFLGFSTQMGQLDAG*CLVILS
Trigger: GGAGAGAATCACGAGGCAGCAGCCTGCATCCAACTG...CCCCATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CCA 90 bp TTAAATTGCTTTGAAACTGGAACCTGCAGGTACAGGCGTTCTTTAACCACTATTGCCAAGGAAAGCACTTaGAGACTGCCCGCAGCCGTC +
Preference number: 4 (lower is better)
Translates to: LNCFETGTCRYRRSLTTIAKEST*RLPAAV
Trigger: GACGGCTGCGGGCAGTCTCCAAGTGCTTTCCTTGGC...AATAGTGGTTAAAGAACGCCTGTACCTGCAGGTTCCAGTTTCAAAGCAATTTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CCA 90 bp TTAAATTGCTTTGAAACTGGAACCTGCAGGTACAGGCGTTCTTTAACCACTATTGGCACAGTGGGGGTGTaGTCAGCAGATTCCAGGGAC +
Preference number: 4 (lower is better)
Translates to: LNCFETGTCRYRRSLTTIGTVGV*SADSRD
Trigger: GTCCCTGGAATCTGCTGACCACACCCCCACTGTGCC...AATAGTGGTTAAAGAACGCCTGTACCTGCAGGTTCCAGTTTCAAAGCAATTTAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CCA 90 bp TTAAATTGCTTTGAAACTGGAACCTGCAGGTACAGGCGTTCTTTAACCACTATTAGTCCCAGAGGCCGATaGTGCAGCTGGTCGCTCCTA +
Preference number: 4 (lower is better)
Translates to: LNCFETGTCRYRRSLTTISPRGR*CSWSLL
Trigger: TAGGAGCGACCAGCTGCACCATCGGCCTCTGGGACT...AATAGTGGTTAAAGAACGCCTGTACCTGCAGGTTCCAGTTTCAAAGCAATTTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CCA 90 bp CACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGGGGAGGGCTGGAAAAGTGTaGGAGCTGACTGCCTGTGTC +
Preference number: 4 (lower is better)
Translates to: HKRLVQYGIFLGFSTQMGRAGKV*ELTACV
Trigger: GACACAGGCAGTCAGCTCCCACACTTTTCCAGCCCT...CCCCATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CCA 90 bp CACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGGGGTTATGCAGCTGGCTGTaGACCAGGAACTGCAGCCAG +
Preference number: 4 (lower is better)
Translates to: HKRLVQYGIFLGFSTQMGLCSWL*TRNCSQ
Trigger: CTGGCTGCAGTTCCTGGTCCACAGCCAGCTGCATAA...CCCCATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CCA 90 bp GTTCCCTACAGCCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAGTGTCCTTCAGCACTTaGCTGAGGAGACACAGCTTC +
Preference number: 4 (lower is better)
Translates to: VPYSHKRLVQYGIFLGFSVSFST*LRRHSF
Trigger: GAAGCTGTGTCTCCTCAGCCAAGTGCTGAAGGACAC...TGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGGCTGTAGGGAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CCA 90 bp TTAAATTGCTTTGAAACTGGAACCTGCAGGTACAGGCGTTCTTTAACCACTATTAGAGTGAGCAGCAGATaGCGCTCCTCAAGGCTGCCC +
Preference number: 4 (lower is better)
Translates to: LNCFETGTCRYRRSLTTIRVSSR*RSSRLP
Trigger: GGGCAGCCTTGAGGAGCGCCATCTGCTGCTCACTCT...AATAGTGGTTAAAGAACGCCTGTACCTGCAGGTTCCAGTTTCAAAGCAATTTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CCA 90 bp AAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCCCTACAGCCACAAACGAGAGAGGCTGGGCTTaGCTTCCTCTTCAGCCCCTC +
Preference number: 4 (lower is better)
Translates to: KTLLISILIFPPFPTATNERGWA*LPLQPL
Trigger: GAGGGGCTGAAGAGGAAGCCAAGCCCAGCCTCTCTC...GTTTGTGGCTGTAGGGAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CCA 90 bp GTTCCCTACAGCCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCATGTGTTGAGAGAGGCTaGGCTTGGCTTCCTCTTCAG +
Preference number: 4 (lower is better)
Translates to: VPYSHKRLVQYGIFLGFSCVERG*AWLPLQ
Trigger: CTGAAGAGGAAGCCAAGCCCAGCCTCTCTCAACACA...TGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGGCTGTAGGGAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CCA 90 bp CAGCCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGGATCAGGAGCTCTGTaGTGCAAGACAGCTCCCCGT +
Preference number: 4 (lower is better)
Translates to: QPQTTSAVWYISGLFNSNGSGAL*CKTAPR
Trigger: ACGGGGAGCTGTCTTGCACCACAGAGCTCCTGATCC...ATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGGCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CCA 90 bp GTTCCCTACAGCCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAAAGGTAAAGCAGTGGTaGGCCAGGATCAGGAGCTCT +
Preference number: 4 (lower is better)
Translates to: VPYSHKRLVQYGIFLGFSKVKQW*ARIRSS
Trigger: AGAGCTCCTGATCCTGGCCCACCACTGCTTTACCTT...TGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGGCTGTAGGGAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR TCA 90 bp CAGCCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATACCGTCCCCAACCGTTaGGATGACAAAGGGAGTCCA +
Preference number: 4 (lower is better)
Translates to: QPQTTSAVWYISGLFNSNTVPNR*DDKGSP
Trigger: TGGACTCCCTTTGTCATCTCAACGGTTGGGGACGGT...ATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR TCA 90 bp CACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGGGGAAGGACAGTGTGAGGTaGAGCAGCTGCTCAGCAAAG +
Preference number: 4 (lower is better)
Translates to: HKRLVQYGIFLGFSTQMGKDSVR*SSCSAK
Trigger: CTTTGCTGAGCAGCTGCTTCACCTCACACTGTCCTT...CCCCATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR TCA 90 bp CACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGGGGCTTCCATCCACAAGCTaGTGCTTGAGCAGTCATGGC +
Preference number: 4 (lower is better)
Translates to: HKRLVQYGIFLGFSTQMGLPSTS*CLSSHG
Trigger: GCCATGACTGCTCAAGCATCAGCTTGTGGATGGAAG...CCCCATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR TCA 90 bp CACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGGGGATCTCATTCCTCATGTaGCTGTGGCAGCAAGTGCCC +
Preference number: 4 (lower is better)
Translates to: HKRLVQYGIFLGFSTQMGISFLM*LWQQVP
Trigger: GGGCACTTGCTGCCACAGTCACATGAGGAATGAGAT...CCCCATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR TCA 90 bp CAAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCCCTACAGCCACAAAGCAGCCAACTTGTGTTaGGAGAGGCTGGGCTTGGCT +
Preference number: 4 (lower is better)
Translates to: QNTSDLNTNFSSVPYSHKAANLC*ERLGLA
Trigger: AGCCAAGCCCAGCCTCTCTCAACACAAGTTGGCTGC...TTTGTGGCTGTAGGGAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR GCA 90 bp CAGCCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATCCACAGTGCTGGCGCTaGCGTGGATCATTAGTCTGT +
Preference number: 4 (lower is better)
Translates to: QPQTTSAVWYISGLFNSNPQCWR*RGSLVC
Trigger: ACAGACTAATGATCCACGGCAGCGCCAGCACTGTGG...ATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR GCA 90 bp AAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCCCTACAGCCACAAACAGGAGACACAGCTTCTaGACGTCTGGCCCGTCAGAG +
Preference number: 4 (lower is better)
Translates to: KTLLISILIFPPFPTATNRRHSF*TSGPSE
Trigger: CTCTGACGGGCCAGACGTGCAGAAGCTGTGTCTCCT...GTTTGTGGCTGTAGGGAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR GCA 90 bp AAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCCCTACAGCCACAAACCGGAGGCCAAGGCTCTaGAGTGCAACACCAGCACTA +
Preference number: 4 (lower is better)
Translates to: KTLLISILIFPPFPTATNRRPRL*SATPAL
Trigger: TAGTGCTGGTGTTGCACTGCAGAGCCTTGGCCTCCG...GTTTGTGGCTGTAGGGAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR GCA 90 bp GTTCCCTACAGCCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCACTGAGAAGCCAAGATTaGTCGGAGCATGGCTTCACT +
Preference number: 4 (lower is better)
Translates to: VPYSHKRLVQYGIFLGFSLRSQD*SEHGFT
Trigger: AGTGAAGCCATGCTCCGAGCAATCTTGGCTTCTCAG...TGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGGCTGTAGGGAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR GCA 90 bp CAAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCCCTACAGCCACAAAGGGCTGTCTTCAGGGTaGCGGTTGGGTCTAGCTTCT +
Preference number: 4 (lower is better)
Translates to: QNTSDLNTNFSSVPYSHKGLSSG*RLGLAS
Trigger: AGAAGCTAGACCCAACCGGCACCCTGAAGACAGCCC...TTTGTGGCTGTAGGGAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR GCA 90 bp CCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGGGTCAGCTTCAGTTGGATaGAGGCTGCTGCCTCGTGAT +
Preference number: 4 (lower is better)
Translates to: PQTTSAVWYISGLFNSNGSASVG*RLLPRD
Trigger: ATCACGAGGCAGCAGCCTGCATCCAACTGAAGCTGA...CCCATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CCA 90 bp CAGCCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATCTTCCACGGCCTTCCTaGATCACTGCTCTTCACGTG +
Preference number: 4 (lower is better)
Translates to: QPQTTSAVWYISGLFNSNLPRPS*ITALHV
Trigger: CACGTGAAGAGCAGTGATCCAGGAAGGCCGTGGAAG...ATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR TCA 90 bp GTTCCCTACAGCCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAGAGTACACTTCTGGCTaGGAGAAAAACACTGCATGC +
Preference number: 4 (lower is better)
Translates to: VPYSHKRLVQYGIFLGFSEYTSG*EKNTAC
Trigger: GCATGCAGTGTTTTTCTCTCAGCCAGAAGTGTACTC...TGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGGCTGTAGGGAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR TCA 90 bp CCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGGGTCTACTGTGTCCAGCTaGCGATTTTCTATGCCAGCC +
Preference number: 4 (lower is better)
Translates to: PQTTSAVWYISGLFNSNGSTVSS*RFSMPA
Trigger: GGCTGGCATAGAAAATCGTCAGCTGGACACAGTAGA...CCCATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR TCA 90 bp CCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGGGGAAAAGGGATGCTGCTaGTCAGGAGCAGGAGATTGT +
Preference number: 4 (lower is better)
Translates to: PQTTSAVWYISGLFNSNGEKGCC*SGAGDC
Trigger: ACAATCTCCTGCTCCTGATCAGCAGCATCCCTTTTC...CCCATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR TCA 90 bp CCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGGGACTCATCTTCCACACTaGAGCCCATGTTCCTCAGGA +
Preference number: 4 (lower is better)
Translates to: PQTTSAVWYISGLFNSNGTHLPH*SPCSSG
Trigger: TCCTGAGGAACATGGGCTTCAGTGTGGAAGATGAGT...CCCATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR TCA 90 bp AAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCCCTACAGCCACAAACCTACCGAAGGGTTGGTaGAGGAAGAGAGCCCTAAGG +
Preference number: 4 (lower is better)
Translates to: KTLLISILIFPPFPTATNLPKGW*RKRALR
Trigger: CCTTAGGGCTCTCTTCCTTCACCAACCCTTCGGTAG...GTTTGTGGCTGTAGGGAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR TCA 90 bp AGAAGCCACTCTAACAAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCCTTGCAGGACTCTGGTaGTGCCTTCCATGTGGCACG +
Preference number: 4 (lower is better)
Translates to: RSHSNKTLLISILIFPPFLAGLW*CLPCGT
Trigger: CGTGCCACATGGAAGGCATCACCAGAGTCCTGCAAG...GAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTTGTTAGAGTGGCTTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR TCA 90 bp CCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGGGTCTCCCGGCACATACTaGAGCACAGGGCAATCATAT +
Preference number: 4 (lower is better)
Translates to: PQTTSAVWYISGLFNSNGSPGTY*STGQSY
Trigger: ATATGATTGCCCTGTGCTTCAGTATGTGCCGGGAGA...CCCATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR TCA 90 bp TTAAATTGCTTTGAAACTGGAACCTGCAGGTACAGGCGTTCTTTAACCACTATTAGGCAGCATCCCGTCTaGGGGTCCTTCAGAAGCATA +
Preference number: 4 (lower is better)
Translates to: LNCFETGTCRYRRSLTTIRQHPV*GSFRSI
Trigger: TATGCTTCTGAAGGACCCTCAGACGGGATGCTGCCT...AATAGTGGTTAAAGAACGCCTGTACCTGCAGGTTCCAGTTTCAAAGCAATTTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR GCA 90 bp AGAAGCCACTCTAACAAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCAATGATCATGTCCGCTaGCTGTGCAGGCAGGGGCAG +
Preference number: 4 (lower is better)
Translates to: RSHSNKTLLISILIFPPFNDHVR*LCRQGQ
Trigger: CTGCCCCTGCCTGCACAGGCAGCGGACATGATCATT...GAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTTGTTAGAGTGGCTTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR GCA 90 bp TTAAATTGCTTTGAAACTGGAACCTGCAGGTACAGGCGTTCTTTAACCACTATTAGTGTGTTGGCAGACTaGCAGACGAACAGCCGGCTA +
Preference number: 4 (lower is better)
Translates to: LNCFETGTCRYRRSLTTISVLAD*QTNSRL
Trigger: TAGCCGGCTGTTCGTCTGGCAGTCTGCCAACACACT...AATAGTGGTTAAAGAACGCCTGTACCTGCAGGTTCCAGTTTCAAAGCAATTTAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR GCA 90 bp CAGCCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATTCCCATTGCTTCAGCTaGAACCTTGTCCTCCACGGA +
Preference number: 4 (lower is better)
Translates to: QPQTTSAVWYISGLFNSNSHCFS*NLVLHG
Trigger: TCCGTGGAGGACAAGGTTGCAGCTGAAGCAATGGGA...ATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGGCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR GCA 90 bp CCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGGGCCGTCAGAGAAGAGCTaGTCAGTGCCAACAAACAGT +
Preference number: 4 (lower is better)
Translates to: PQTTSAVWYISGLFNSNGPSEKS*SVPTNS
Trigger: ACTGTTTGTTGGCACTGAGCAGCTCTTCTCTGACGG...CCCATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR GCA 90 bp CCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGGGTTGGATGCAGGCTGCTaGCTCGTGATTCTCTCCTAT +
Preference number: 4 (lower is better)
Translates to: PQTTSAVWYISGLFNSNGLDAGC*LVILSY
Trigger: ATAGGAGAGAATCACGAGGCAGCAGCCTGCATCCAA...CCCATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CCA 90 bp AGAAGCCACTCTAACAAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCCGTGGGTTGGCACAGTaGGGGTGTGGTCAGCAGATT +
Preference number: 4 (lower is better)
Translates to: RSHSNKTLLISILIFPPFRGLAQ*GCGQQI
Trigger: AATCTGCTGACCACACCCCCACTGTGCCAACCCACG...GAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTTGTTAGAGTGGCTTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CCA 90 bp CAGCCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATAAACACTGCATGCTCTaGGTCTCCAAGTCCCAGAGG +
Preference number: 4 (lower is better)
Translates to: QPQTTSAVWYISGLFNSNKHCML*VSKSQR
Trigger: CCTCTGGGACTTGGAGACCCAGAGCATGCAGTGTTT...ATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGGCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CCA 90 bp CAAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCCCTACAGCCACAAAGCAAGGCACAGCTGCTaGTCTCCGCCAATGTCTACA +
Preference number: 4 (lower is better)
Translates to: QNTSDLNTNFSSVPYSHKARHSC*SPPMST
Trigger: TGTAGACATTGGCGGAGACCAGCAGCTGTGCCTTGC...TTTGTGGCTGTAGGGAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CCA 90 bp AGAAGCCACTCTAACAAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCGGGAGTCCACAGTGCTaGCGCTGCCGTGGATCATTA +
Preference number: 4 (lower is better)
Translates to: RSHSNKTLLISILIFPPFGSPQC*RCRGSL
Trigger: TAATGATCCACGGCAGCGCCAGCACTGTGGACTCCC...GAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTTGTTAGAGTGGCTTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CCA 90 bp CACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGGGGGCATACTGCTCACACTaGCCTGATTGGTGGGAATCA +
Preference number: 4 (lower is better)
Translates to: HKRLVQYGIFLGFSTQMGAYCSH*PDWWES
Trigger: TGATTCCCACCAATCAGGCCAGTGTGAGCAGTATGC...CCCCATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CCA 90 bp AGAAGCCACTCTAACAAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCATGCCCACTGGCTGCTaGACTCACTGGACAACCTGC +
Preference number: 4 (lower is better)
Translates to: RSHSNKTLLISILIFPPFMPTGC*THWTTC
Trigger: GCAGGTTGTCCAGTGAGTCCAGCAGCCAGTGGGCAT...GAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTTGTTAGAGTGGCTTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CCA 90 bp CACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGGGGAGATTCCACCTCTGCTaGGTGGTAGTTATGCAGCTG +
Preference number: 4 (lower is better)
Translates to: HKRLVQYGIFLGFSTQMGRFHLC*VVVMQL
Trigger: CAGCTGCATAACTACCACCCAGCAGAGGTGGAATCT...CCCCATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CCA 90 bp GTTCCCTACAGCCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCATCTCCTTTGTTTTTCTaGAGTTCCTGGAGGCAGCTG +
Preference number: 4 (lower is better)
Translates to: VPYSHKRLVQYGIFLGFSSPLFF*SSWRQL
Trigger: CAGCTGCCTCCAGGAACTCCAGAAAAACAAAGGAGA...TGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGGCTGTAGGGAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR TCA 90 bp TTAAATTGCTTTGAAACTGGAACCTGCAGGTACAGGCGTTCTTTAACCACTATTCTTGGGCCTGTCTCTTaGTGTGCTGTTCTGAGACTC +
Preference number: 4 (lower is better)
Translates to: LNCFETGTCRYRRSLTTILGPVS*CAVLRL
Trigger: GAGTCTCAGAACAGCACATCAAGAGACAGGCCCAAG...AATAGTGGTTAAAGAACGCCTGTACCTGCAGGTTCCAGTTTCAAAGCAATTTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR TCA 90 bp CAGCCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGCTCAGAATCTTCTCTaGGAAGAGCCAGGTCCACTT +
Preference number: 4 (lower is better)
Translates to: QPQTTSAVWYISGLFNSNAQNLL*EEPGPL
Trigger: AAGTGGACCTGGCTCTTCTCAGAGAAGATTCTGAGC...ATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGGCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR TCA 90 bp GTTCCCTACAGCCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCATCTAGCTCTTCAGTGTaGACACAAAGCTCCCTTATC +
Preference number: 4 (lower is better)
Translates to: VPYSHKRLVQYGIFLGFSSSSSV*TQSSLI
Trigger: GATAAGGGAGCTTTGTGTTCACACTGAAGAGCTAGA...TGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGGCTGTAGGGAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR TCA 90 bp CACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGGGGGGTCCTCCTTCACTGTaGCGACACCTTCATTTACAT +
Preference number: 4 (lower is better)
Translates to: HKRLVQYGIFLGFSTQMGGPPSL*RHLHLH
Trigger: ATGTAAATGAAGGTGTCGTCACAGTGAAGGAGGACC...CCCCATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTG
44% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR TCA 90 bp CAGCCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATCTGCTCACACTGGCCTaGTTGGTGGGAATCAAAATC +
Preference number: 4 (lower is better)
Translates to: QPQTTSAVWYISGLFNSNLLTLA*LVGIKI
Trigger: GATTTTGATTCCCACCAATCAGGCCAGTGTGAGCAG...ATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGGCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR TCA 90 bp TTAAATTGCTTTGAAACTGGAACCTGCAGGTACAGGCGTTCTTTAACCACTATTTGGAGCATGCAGAACTaGAGCACTAATGCCCACTGG +
Preference number: 4 (lower is better)
Translates to: LNCFETGTCRYRRSLTTIWSMQN*STNAHW
Trigger: CCAGTGGGCATTAGTGCTTCAGTTCTGCATGCTCCA...AATAGTGGTTAAAGAACGCCTGTACCTGCAGGTTCCAGTTTCAAAGCAATTTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR TCA 90 bp CCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGGGAGCTTCAAGTGGCTCTaGAGGACAGGACTGAAATAC +
Preference number: 4 (lower is better)
Translates to: PQTTSAVWYISGLFNSNGSFKWL*RTGLKY
Trigger: GTATTTCAGTCCTGTCCTTCAGAGCCACTTGAAGCT...CCCATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR TCA 90 bp CAAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCCCTACAGCCACAAATGTCCTCCACGGAGGTaGCAATCCAAACACAGAGAC +
Preference number: 4 (lower is better)
Translates to: QNTSDLNTNFSSVPYSHKCPPRR*QSKHRD
Trigger: GTCTCTGTGTTTGGATTGTCACCTCCGTGGAGGACA...TTTGTGGCTGTAGGGAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR TCA 90 bp CCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGGGTTTCCTCTGCTGGGTTaGAAGGTTGCTTTTCTCCTG +
Preference number: 4 (lower is better)
Translates to: PQTTSAVWYISGLFNSNGFPLLG*KVAFLL
Trigger: CAGGAGAAAAGCAACCTTTCAACCCAGCAGAGGAAA...CCCATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR TCA 90 bp AAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCCCTACAGCCACAAACGTGTTATCAACTTGGTaGGCCGGTTACAGTGCAGGG +
Preference number: 4 (lower is better)
Translates to: KTLLISILIFPPFPTATNVLSTW*AGYSAG
Trigger: CCCTGCACTGTAACCGGCTCACCAAGTTGATAACAC...GTTTGTGGCTGTAGGGAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR GCA 90 bp AGAAGCCACTCTAACAAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCTCCTCCCATAGGAACTaGCTAAAGGGTCCTGGGAGG +
Preference number: 4 (lower is better)
Translates to: RSHSNKTLLISILIFPPFSSHRN*LKGPGR
Trigger: CCTCCCAGGACCCTTTAGGCAGTTCCTATGGGAGGA...GAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTTGTTAGAGTGGCTTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR GCA 90 bp CAGCCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATTCTTCAGTGAGCTTCTaGAGTGTCCTCCCACAACAG +
Preference number: 4 (lower is better)
Translates to: QPQTTSAVWYISGLFNSNSSVSF*SVLPQQ
Trigger: CTGTTGTGGGAGGACACTGCAGAAGCTCACTGAAGA...ATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGGCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR GCA 90 bp CCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGGGTCTCTCACAGAGCTGTaGATCAATGATCATGTCCGC +
Preference number: 4 (lower is better)
Translates to: PQTTSAVWYISGLFNSNGSLTEL*INDHVR
Trigger: GCGGACATGATCATTGATGCACAGCTCTGTGAGAGA...CCCATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR GCA 90 bp TTAAATTGCTTTGAAACTGGAACCTGCAGGTACAGGCGTTCTTTAACCACTATTAAAGCAAGGCACAGCTaGTGGTCTCCGCCAATGTCT +
Preference number: 4 (lower is better)
Translates to: LNCFETGTCRYRRSLTTIKARHS*WSPPMS
Trigger: AGACATTGGCGGAGACCAGCAGCTGTGCCTTGCTTT...AATAGTGGTTAAAGAACGCCTGTACCTGCAGGTTCCAGTTTCAAAGCAATTTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR GCA 90 bp GTTCCCTACAGCCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCATCCTGTCATGGAGCATaGAGAACTGAAGCACTAATG +
Preference number: 4 (lower is better)
Translates to: VPYSHKRLVQYGIFLGFSSCHGA*RTEALM
Trigger: CATTAGTGCTTCAGTTCTGCATGCTCCATGACAGGA...TGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGGCTGTAGGGAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR GCA 90 bp CCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGGGCTGAATGTGTCCCATTaGTTCAGCTGCAACCTTGTC +
Preference number: 4 (lower is better)
Translates to: PQTTSAVWYISGLFNSNGLNVSH*FSCNLV
Trigger: GACAAGGTTGCAGCTGAAGCAATGGGACACATTCAG...CCCATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR GCA 90 bp TTAAATTGCTTTGAAACTGGAACCTGCAGGTACAGGCGTTCTTTAACCACTATTGCACGGATCTCTGAGTaGAAGTCTTCCATGGTGGCT +
Preference number: 4 (lower is better)
Translates to: LNCFETGTCRYRRSLTTIARISE*KSSMVA
Trigger: AGCCACCATGGAAGACTTGCACTCAGAGATCCGTGC...AATAGTGGTTAAAGAACGCCTGTACCTGCAGGTTCCAGTTTCAAAGCAATTTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR GCA 90 bp AAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCCCTACAGCCACAAACTTCAGCCACAGTGTCTaGTTCAAGGCCCTGGGTGTT +
Preference number: 4 (lower is better)
Translates to: KTLLISILIFPPFPTATNFSHSV*FKALGV
Trigger: AACACCCAGGGCCTTGAAGCAGACACTGTGGCTGAA...GTTTGTGGCTGTAGGGAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR GCA 90 bp CACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGGGGTGTCTGGCTTTCCTCTaGTGGGTTGAAAGGTTGCTT +
Preference number: 4 (lower is better)
Translates to: HKRLVQYGIFLGFSTQMGCLAFL*WVERLL
Trigger: AAGCAACCTTTCAACCCAGCAGAGGAAAGCCAGACA...CCCCATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CCA 90 bp GTTCCCTACAGCCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACAGGAGTACACTTCTaGCTGAGAGAAAAACACTGC +
Preference number: 4 (lower is better)
Translates to: VPYSHKRLVQYGIFLGFSTGVHF*LREKHC
Trigger: GCAGTGTTTTTCTCTCAGCCAGAAGTGTACTCCTGT...TGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGGCTGTAGGGAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CCA 90 bp CAGCCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGCCACCTTCAGTAGCTaGGGGTCCACTTTCTTCAAA +
Preference number: 4 (lower is better)
Translates to: QPQTTSAVWYISGLFNSNATFSS*GSTFFK
Trigger: TTTGAAGAAAGTGGACCCCCAGCTACTGAAGGTGGC...ATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGGCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CCA 90 bp AGAAGCCACTCTAACAAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCCTCACCTCGGGGGCTTaGCTAGAGAAGAAGGAAGAG +
Preference number: 4 (lower is better)
Translates to: RSHSNKTLLISILIFPPFLTSGA*LEKKEE
Trigger: CTCTTCCTTCTTCTCTAGCCAAGCCCCCGAGGTGAG...GAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTTGTTAGAGTGGCTTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CCA 90 bp TTAAATTGCTTTGAAACTGGAACCTGCAGGTACAGGCGTTCTTTAACCACTATTTCAAAGCAGCGAGCTTaGAGAAGGACAGCTCACTGG +
Preference number: 4 (lower is better)
Translates to: LNCFETGTCRYRRSLTTISKQRA*RRTAHW
Trigger: CCAGTGAGCTGTCCTTCTCCAAGCTCGCTGCTTTGA...AATAGTGGTTAAAGAACGCCTGTACCTGCAGGTTCCAGTTTCAAAGCAATTTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CCA 90 bp CCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGGGTTGCTTATGAGAGTGTaGAGGTTCTGGGCTACCTCA +
Preference number: 4 (lower is better)
Translates to: PQTTSAVWYISGLFNSNGLLMRV*RFWATS
Trigger: TGAGGTAGCCCAGAACCTCCACACTCTCATAAGCAA...CCCATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CCA 90 bp CACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGGGGCTGGCTTTCCTCTGCTaGGTTGAAAGGTTGCTTTTC +
Preference number: 4 (lower is better)
Translates to: HKRLVQYGIFLGFSTQMGLAFLC*VERLLF
Trigger: GAAAAGCAACCTTTCAACCCAGCAGAGGAAAGCCAG...CCCCATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR TCA 90 bp CAGCCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGTGGGAATCAAAATCTaGGCATTTGCAAGGCTAGCC +
Preference number: 4 (lower is better)
Translates to: QPQTTSAVWYISGLFNSNVGIKI*AFARLA
Trigger: GGCTAGCCTTGCAAATGCTCAGATTTTGATTCCCAC...ATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGGCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR TCA 90 bp CAGCCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATTGGGAGTCTTACTCTTaGTCAACTCCTGGACCAGAA +
Preference number: 4 (lower is better)
Translates to: QPQTTSAVWYISGLFNSNWESYS*STPGPE
Trigger: TTCTGGTCCAGGAGTTGATCAAGAGTAAGACTCCCA...ATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGGCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR TCA 90 bp CAGCCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATACCGAGGTAGGGTCATaGTACAGTCCATTAGCTTCT +
Preference number: 4 (lower is better)
Translates to: QPQTTSAVWYISGLFNSNTEVGS*YSPLAS
Trigger: AGAAGCTAATGGACTGTATCATGACCCTACCTCGGT...ATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGGCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR GCA 90 bp AGAAGCCACTCTAACAAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCGCCTTCCTGGATCACTaGTCTTCACGTGCTCCTTCT +
Preference number: 4 (lower is better)
Translates to: RSHSNKTLLISILIFPPFAFLDH*SSRAPS
Trigger: AGAAGGAGCACGTGAAGAGCAGTGATCCAGGAAGGC...GAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTTGTTAGAGTGGCTTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR GCA 90 bp TTAAATTGCTTTGAAACTGGAACCTGCAGGTACAGGCGTTCTTTAACCACTATTGAGAAAAACACTGCATaGTCTGGGTCTCCAAGTCCC +
Preference number: 4 (lower is better)
Translates to: LNCFETGTCRYRRSLTTIEKNTA*SGSPSP
Trigger: GGGACTTGGAGACCCAGAGCATGCAGTGTTTTTCTC...AATAGTGGTTAAAGAACGCCTGTACCTGCAGGTTCCAGTTTCAAAGCAATTTAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR GCA 90 bp AGAAGCCACTCTAACAAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCTACCTGGGGAAAGCCTaGGTCTGTGCATTTTCCTGG +
Preference number: 4 (lower is better)
Translates to: RSHSNKTLLISILIFPPFYLGKA*VCAFSW
Trigger: CCAGGAAAATGCACAGACGCAGGCTTTCCCCAGGTA...GAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTTGTTAGAGTGGCTTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR GCA 90 bp CCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGGGCTTCTGGACTTAGTCTaGGGAGAAGGATACATTCCT +
Preference number: 4 (lower is better)
Translates to: PQTTSAVWYISGLFNSNGLLDLV*GEGYIP
Trigger: AGGAATGTATCCTTCTCCGCAGACTAAGTCCAGAAG...CCCATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR GCA 90 bp CAGCCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATATGAAAGTCACACCCTaGACGGGATTTGTAGCTCTG +
Preference number: 4 (lower is better)
Translates to: QPQTTSAVWYISGLFNSNMKVTP*TGFVAL
Trigger: CAGAGCTACAAATCCCGTGCAGGGTGTGACTTTCAT...ATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGGCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR GCA 90 bp TTAAATTGCTTTGAAACTGGAACCTGCAGGTACAGGCGTTCTTTAACCACTATTCTTCCAACAGCATACTaGTCACACTGGCCTGATTGG +
Preference number: 4 (lower is better)
Translates to: LNCFETGTCRYRRSLTTILPTAY*SHWPDW
Trigger: CCAATCAGGCCAGTGTGAGCAGTATGCTGTTGGAAG...AATAGTGGTTAAAGAACGCCTGTACCTGCAGGTTCCAGTTTCAAAGCAATTTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR GCA 90 bp CCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGGGGTGTTCAGTGACTCCTaGTCTTTGTGTTTCAGTCTG +
Preference number: 4 (lower is better)
Translates to: PQTTSAVWYISGLFNSNGVFSDS*SLCFSL
Trigger: CAGACTGAAACACAAAGAGCAGGAGTCACTGAACAC...CCCATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR GCA 90 bp CAGCCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGCTGGGTTGAAAGGTTaGTTTTCTCCTGTTCCCTCT +
Preference number: 4 (lower is better)
Translates to: QPQTTSAVWYISGLFNSNAGLKG*FSPVPS
Trigger: AGAGGGAACAGGAGAAAAGCAACCTTTCAACCCAGC...ATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGGCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR GCA 90 bp CAAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCCCTACAGCCACAAAGGCGTAACTCTCTGCTaGATCCAACATCAGAGTCAG +
Preference number: 4 (lower is better)
Translates to: QNTSDLNTNFSSVPYSHKGVTLC*IQHQSQ
Trigger: CTGACTCTGATGTTGGATGCAGCAGAGAGTTACGCC...TTTGTGGCTGTAGGGAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CCA 90 bp CAAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCCCTACAGCCACAAACCTTTATCCAATACCTaGGGAAAGCCTGCGTCTGTG +
Preference number: 4 (lower is better)
Translates to: QNTSDLNTNFSSVPYSHKPLSNT*GKPASV
Trigger: CACAGACGCAGGCTTTCCCCAGGTATTGGATAAAGG...TTTGTGGCTGTAGGGAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CCA 90 bp CAGCCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATTTTTTCTGGAGTTCCTaGAGGCAGCTGTCATCCCTA +
Preference number: 4 (lower is better)
Translates to: QPQTTSAVWYISGLFNSNFFWSS*RQLSSL
Trigger: TAGGGATGACAGCTGCCTCCAGGAACTCCAGAAAAA...ATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGGCTG
43% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CCA 90 bp AAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCCCTACAGCCACAAACTCATTGGGAGCCAAGTaGTTATCTGTGAGCATGCGG +
Preference number: 4 (lower is better)
Translates to: KTLLISILIFPPFPTATNSLGAK*LSVSMR
Trigger: CCGCATGCTCACAGATAACCACTTGGCTCCCAATGA...GTTTGTGGCTGTAGGGAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CCA 90 bp CAAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCCCTACAGCCACAAAGAACACAGGAGTCCTTaGCGTAACTCTCTGCTGCAT +
Preference number: 4 (lower is better)
Translates to: QNTSDLNTNFSSVPYSHKEHRSP*RNSLLH
Trigger: ATGCAGCAGAGAGTTACGCCAAGGACTCCTGTGTTC...TTTGTGGCTGTAGGGAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR TCA 90 bp CAGCCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGAAATACTGACACCTTaGTCTTCAGTGAGCTTCTGC +
Preference number: 4 (lower is better)
Translates to: QPQTTSAVWYISGLFNSNEILTP*SSVSFC
Trigger: GCAGAAGCTCACTGAAGATCAAGGTGTCAGTATTTC...ATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGGCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR TCA 90 bp CAGCCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATATGGCCACTCCTTTCTaGAAATGCTCATCTAGCTCT +
Preference number: 4 (lower is better)
Translates to: QPQTTSAVWYISGLFNSNMATPF*KCSSSS
Trigger: AGAGCTAGATGAGCATTTTCAGAAAGGAGTGGCCAT...ATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGGCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR TCA 90 bp TTAAATTGCTTTGAAACTGGAACCTGCAGGTACAGGCGTTCTTTAACCACTATTTCGGTTTCCTGGGTCTaGAATTCTTCCATCCACAAG +
Preference number: 4 (lower is better)
Translates to: LNCFETGTCRYRRSLTTISVSWV*NSSIHK
Trigger: CTTGTGGATGGAAGAATTTCAGACCCAGGAAACCGA...AATAGTGGTTAAAGAACGCCTGTACCTGCAGGTTCCAGTTTCAAAGCAATTTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR TCA 90 bp CCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGGGACAGGACTGAAATACTaGAGAAGAGATTCCACCTCT +
Preference number: 4 (lower is better)
Translates to: PQTTSAVWYISGLFNSNGTGLKY*RRDSTS
Trigger: AGAGGTGGAATCTCTTCTTCAGTATTTCAGTCCTGT...CCCATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR TCA 90 bp CAAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCCCTACAGCCACAAACAGTCCATTAGCTTCTaGTGGCCCAAGTTGATAAGC +
Preference number: 4 (lower is better)
Translates to: QNTSDLNTNFSSVPYSHKQSISF*WPKLIS
Trigger: GCTTATCAACTTGGGCCATCAGAAGCTAATGGACTG...TTTGTGGCTGTAGGGAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR GCA 90 bp CAAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCCCTACAGCCACAAACTGAGAGAAAAACACTaGATGCTCTGGGTCTCCAAG +
Preference number: 4 (lower is better)
Translates to: QNTSDLNTNFSSVPYSHKLREKH*MLWVSK
Trigger: CTTGGAGACCCAGAGCATGCAGTGTTTTTCTCTCAG...TTTGTGGCTGTAGGGAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR GCA 90 bp TTAAATTGCTTTGAAACTGGAACCTGCAGGTACAGGCGTTCTTTAACCACTATTGCTCAGCAAAGTGTTTaGTTTGGGTTTCCGAGTCAC +
Preference number: 4 (lower is better)
Translates to: LNCFETGTCRYRRSLTTIAQQSV*FGFPSH
Trigger: GTGACTCGGAAACCCAAAGCAAACACTTTGCTGAGC...AATAGTGGTTAAAGAACGCCTGTACCTGCAGGTTCCAGTTTCAAAGCAATTTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR GCA 90 bp CAGCCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATCAGATGCAAGAAAAATaGCACTTCTGGCCAGCTTGT +
Preference number: 4 (lower is better)
Translates to: QPQTTSAVWYISGLFNSNQMQEK*HFWPAC
Trigger: ACAAGCTGGCCAGAAGTGGCATTTTTCTTGCATCTG...ATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGGCTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR GCA 90 bp CCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGGGGTCTTCCAGCTCAGATaGAAGAAAAATGCCACTTCT +
Preference number: 4 (lower is better)
Translates to: PQTTSAVWYISGLFNSNGVFQLR*KKNATS
Trigger: AGAAGTGGCATTTTTCTTGCATCTGAGCTGGAAGAC...CCCATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR GCA 90 bp AAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCCCTACAGCCACAAACAGAAGAGCTGCTCAGTaGCAACAAACAGTTGGAGGA +
Preference number: 4 (lower is better)
Translates to: KTLLISILIFPPFPTATNRRAAQ*QQTVGG
Trigger: TCCTCCAACTGTTTGTTGGCACTGAGCAGCTCTTCT...GTTTGTGGCTGTAGGGAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR GCA 90 bp TTAAATTGCTTTGAAACTGGAACCTGCAGGTACAGGCGTTCTTTAACCACTATTCTAGCCACAGCAAACTaGCCATCTGCTTTTAGCTTC +
Preference number: 4 (lower is better)
Translates to: LNCFETGTCRYRRSLTTILATAN*PSAFSF
Trigger: GAAGCTAAAAGCAGATGGGCAGTTTGCTGTGGCTAG...AATAGTGGTTAAAGAACGCCTGTACCTGCAGGTTCCAGTTTCAAAGCAATTTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR GCA 90 bp TTAAATTGCTTTGAAACTGGAACCTGCAGGTACAGGCGTTCTTTAACCACTATTAATACTGGCACACTCTaGTTGCTTCATGCACACAGC +
Preference number: 4 (lower is better)
Translates to: LNCFETGTCRYRRSLTTINTGTL*LLHAHS
Trigger: GCTGTGTGCATGAAGCAAGCAGAGTGTGCCAGTATT...AATAGTGGTTAAAGAACGCCTGTACCTGCAGGTTCCAGTTTCAAAGCAATTTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR GCA 90 bp CACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGGGGTGTCCAACAACTTCATaGCTACCAATGTACGGTCTT +
Preference number: 4 (lower is better)
Translates to: HKRLVQYGIFLGFSTQMGCPTTS*LPMYGL
Trigger: AAGACCGTACATTGGTAGGCATGAAGTTGTTGGACA...CCCCATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR GCA 90 bp AAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCCCTACAGCCACAAACAGGGCAATCATATTGTaGTTTTCGCTGTCTCCAGGG +
Preference number: 4 (lower is better)
Translates to: KTLLISILIFPPFPTATNRAIIL*FSLSPG
Trigger: CCCTGGAGACAGCGAAAAGCACAATATGATTGCCCT...GTTTGTGGCTGTAGGGAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR GCA 90 bp AAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCCCTACAGCCACAAACCTTGGCGTAACTCTCTaGTGCATCCAACATCAGAGT +
Preference number: 4 (lower is better)
Translates to: KTLLISILIFPPFPTATNLGVTL*CIQHQS
Trigger: ACTCTGATGTTGGATGCAGCAGAGAGTTACGCCAAG...GTTTGTGGCTGTAGGGAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CCA 90 bp TTAAATTGCTTTGAAACTGGAACCTGCAGGTACAGGCGTTCTTTAACCACTATTCTCAGTTTCATGTTGTaGGCAGAGTTAACCAGGTCG +
Preference number: 4 (lower is better)
Translates to: LNCFETGTCRYRRSLTTILSFML*AELTRS
Trigger: CGACCTGGTTAACTCTGCCCACAACATGAAACTGAG...AATAGTGGTTAAAGAACGCCTGTACCTGCAGGTTCCAGTTTCAAAGCAATTTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CCA 90 bp CAGCCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATCACTGGCCTGATTGGTaGGAATCAAAATCTGAGCAT +
Preference number: 4 (lower is better)
Translates to: QPQTTSAVWYISGLFNSNHWPDW*ESKSEH
Trigger: ATGCTCAGATTTTGATTCCCACCAATCAGGCCAGTG...ATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGGCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CCA 90 bp CAGCCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATTCACACTGGCCTGATTaGTGGGAATCAAAATCTGAG +
Preference number: 4 (lower is better)
Translates to: QPQTTSAVWYISGLFNSNSHWPD*WESKSE
Trigger: CTCAGATTTTGATTCCCACCAATCAGGCCAGTGTGA...ATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGGCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CCA 90 bp AGAAGCCACTCTAACAAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCGTGCCAACAAACAGTTaGAGGAGTTTCCCCAGCTCA +
Preference number: 4 (lower is better)
Translates to: RSHSNKTLLISILIFPPFVPTNS*RSFPSS
Trigger: TGAGCTGGGGAAACTCCTCCAACTGTTTGTTGGCAC...GAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTTGTTAGAGTGGCTTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CCA 90 bp CACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGGGGAACAGCCCAAATCCTTaGCAAGTTCATACAGACAGA +
Preference number: 4 (lower is better)
Translates to: HKRLVQYGIFLGFSTQMGNSPNP*QVHTDR
Trigger: TCTGTCTGTATGAACTTGCCAAGGATTTGGGCTGTT...CCCCATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR TCA 90 bp AGAAGCCACTCTAACAAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCAGAACATCCAAGTCCTaGGACACTCTCAGCGATGTA +
Preference number: 4 (lower is better)
Translates to: RSHSNKTLLISILIFPPFRTSKS*DTLSDV
Trigger: TACATCGCTGAGAGTGTCTCAGGACTTGGATGTTCT...GAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTTGTTAGAGTGGCTTCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR TCA 90 bp AAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCCCTACAGCCACAAACTTTGCAAGGCTAGCCTaGAAGATGAGTTTGGGATCT +
Preference number: 4 (lower is better)
Translates to: KTLLISILIFPPFPTATNFARLA*KMSLGS
Trigger: AGATCCCAAACTCATCTTTCAGGCTAGCCTTGCAAA...GTTTGTGGCTGTAGGGAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR GCA 90 bp CCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGGGAGATCAAGCCCACTGTaGTCAGAACAAAAAGAAATC +
Preference number: 4 (lower is better)
Translates to: PQTTSAVWYISGLFNSNGRSSPL*SEQKEI
Trigger: GATTTCTTTTTGTTCTGAGCACAGTGGGCTTGATCT...CCCATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR GCA 90 bp CCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGGGCAAAATCTGAGCATTTaGAAGGCTAGCCTGAAAGAT +
Preference number: 4 (lower is better)
Translates to: PQTTSAVWYISGLFNSNGQNLSI*KASLKD
Trigger: ATCTTTCAGGCTAGCCTTGCAAATGCTCAGATTTTG...CCCATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CCA 90 bp AAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCCCTACAGCCACAAACTGTCTTAGGTACAGATaGGATGAAAAGGGATGCTGC +
Preference number: 4 (lower is better)
Translates to: KTLLISILIFPPFPTATNCLRYR*DEKGCC
Trigger: GCAGCATCCCTTTTCATCCCATCTGTACCTAAGACA...GTTTGTGGCTGTAGGGAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CCA 90 bp CCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGGGGAAAAATGCCACTTCTaGCCAGCTTGTCTAAAATCT +
Preference number: 4 (lower is better)
Translates to: PQTTSAVWYISGLFNSNGEKCHF*PACLKS
Trigger: AGATTTTAGACAAGCTGGCCAGAAGTGGCATTTTTC...CCCATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CCA 90 bp CAGCCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATTCCTTAATAAAGAGCTaGAAACCTCGGATGAGAGTG +
Preference number: 4 (lower is better)
Translates to: QPQTTSAVWYISGLFNSNSLIKS*KPRMRV
Trigger: CACTCTCATCCGAGGTTTCCAGCTCTTTATTAAGGA...ATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGGCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CCA 90 bp AGAAGCCACTCTAACAAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCATCCGTACTCCTCATTaGGAGCCAAGTGGTTATCTG +
Preference number: 4 (lower is better)
Translates to: RSHSNKTLLISILIFPPFIRTPH*EPSGYL
Trigger: CAGATAACCACTTGGCTCCCAATGAGGAGTACGGAT...GAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTTGTTAGAGTGGCTTCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR TCA 90 bp AGAAGCCACTCTAACAAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCAGGAGCAGGAGATTGTaGAGACGGAGTAAGAAGATT +
Preference number: 4 (lower is better)
Translates to: RSHSNKTLLISILIFPPFRSRRL*RRSKKI
Trigger: AATCTTCTTACTCCGTCTTCACAATCTCCTGCTCCT...GAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTTGTTAGAGTGGCTTCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR TCA 90 bp CAGCCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATTCTGAAGGACAGGACTaGAATACTGAAGAAGAGATT +
Preference number: 4 (lower is better)
Translates to: QPQTTSAVWYISGLFNSNSEGQD*NTEEEI
Trigger: AATCTCTTCTTCAGTATTTCAGTCCTGTCCTTCAGA...ATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGGCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR TCA 90 bp CAGCCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATAGTGTTTGCATTTCCTaGGTTAACTGTTCAATCAGC +
Preference number: 4 (lower is better)
Translates to: QPQTTSAVWYISGLFNSNSVCIS*VNCSIS
Trigger: GCTGATTGAACAGTTAACTCAGGAAATGCAAACACT...ATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGGCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CCA 90 bp AAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCCCTACAGCCACAAACGATCTGTCAAGTTACTaGAGACTTGCCGACATTGAA +
Preference number: 4 (lower is better)
Translates to: KTLLISILIFPPFPTATNDLSSY*RLADIE
Trigger: TTCAATGTCGGCAAGTCTCCAGTAACTTGACAGATC...GTTTGTGGCTGTAGGGAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CCA 90 bp CAAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCCCTACAGCCACAAAAAAAGGAAACAAACCTaGTCTTTCATCCACGAGGCA +
Preference number: 4 (lower is better)
Translates to: QNTSDLNTNFSSVPYSHKKRKQT*SFIHEA
Trigger: TGCCTCGTGGATGAAAGACCAGGTTTGTTTCCTTTT...TTTGTGGCTGTAGGGAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTTG
40% GC, longest homopolymer 7 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR TCA 90 bp AGAAGCCACTCTAACAAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCACCATCACAAATGACTaGCTGTCCAAACTTGAAGAG +
Preference number: 4 (lower is better)
Translates to: RSHSNKTLLISILIFPPFTITND*LSKLEE
Trigger: CTCTTCAAGTTTGGACAGTCAGTCATTTGTGATGGT...GAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTTGTTAGAGTGGCTTCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR TCA 90 bp TTAAATTGCTTTGAAACTGGAACCTGCAGGTACAGGCGTTCTTTAACCACTATTCCACTGTTGAGAAAGTaGATCTGTAGTGTTATCAAC +
Preference number: 4 (lower is better)
Translates to: LNCFETGTCRYRRSLTTIPLLRK*ICSVIN
Trigger: GTTGATAACACTACAGATTCACTTTCTCAACAGTGG...AATAGTGGTTAAAGAACGCCTGTACCTGCAGGTTCCAGTTTCAAAGCAATTTAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR TCA 90 bp AGAAGCCACTCTAACAAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCTATTCTGGCCACTGTTaGGAAAGTGAATCTGTAGTG +
Preference number: 4 (lower is better)
Translates to: RSHSNKTLLISILIFPPFYSGHC*ESESVV
Trigger: CACTACAGATTCACTTTCTCAACAGTGGCCAGAATA...GAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTTGTTAGAGTGGCTTCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CCA 90 bp TTAAATTGCTTTGAAACTGGAACCTGCAGGTACAGGCGTTCTTTAACCACTATTTGTAGCTGGTCAAAATaGCCACTCCTTTCTGAAAAT +
Preference number: 4 (lower is better)
Translates to: LNCFETGTCRYRRSLTTICSWSK*PLLSEN
Trigger: ATTTTCAGAAAGGAGTGGCCATTTTGACCAGCTACA...AATAGTGGTTAAAGAACGCCTGTACCTGCAGGTTCCAGTTTCAAAGCAATTTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CCA 90 bp CAGCCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATTCATCTGAGCACCGGTaGAGAATTTCAAAGAAATTA +
Preference number: 4 (lower is better)
Translates to: QPQTTSAVWYISGLFNSNSSEHR*RISKKL
Trigger: TAATTTCTTTGAAATTCTCCACCGGTGCTCAGATGA...ATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGGCTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR TCA 90 bp AAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCCCTACAGCCACAAACCGTGTTGTTGTGAAATaGCAGAATTCTCAAAGACTT +
Preference number: 4 (lower is better)
Translates to: KTLLISILIFPPFPTATNRVVVK*QNSQRL
Trigger: AAGTCTTTGAGAATTCTGTCATTTCACAACAACACG...GTTTGTGGCTGTAGGGAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR TCA 90 bp AAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCCCTACAGCCACAAACAGACAGATTTGTGTTTaGAACAGTCCTGTTCCTTTA +
Preference number: 4 (lower is better)
Translates to: KTLLISILIFPPFPTATNRQICV*NSPVPL
Trigger: TAAAGGAACAGGACTGTTTCAAACACAAATCTGTCT...GTTTGTGGCTGTAGGGAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR GCA 90 bp TTAAATTGCTTTGAAACTGGAACCTGCAGGTACAGGCGTTCTTTAACCACTATTGCCCAAAATTACATTTaGCATTTTCAGGTCAACTCT +
Preference number: 4 (lower is better)
Translates to: LNCFETGTCRYRRSLTTIAQNYI*HFQVNS
Trigger: AGAGTTGACCTGAAAATGGCAAATGTAATTTTGGGC...AATAGTGGTTAAAGAACGCCTGTACCTGCAGGTTCCAGTTTCAAAGCAATTTAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CCA 90 bp TTAAATTGCTTTGAAACTGGAACCTGCAGGTACAGGCGTTCTTTAACCACTATTATCTATGGCATCTCCTaGTTTCCAAGGAAACTTTAT +
Preference number: 4 (lower is better)
Translates to: LNCFETGTCRYRRSLTTIIYGIS*FPRKLY
Trigger: ATAAAGTTTCCTTGGAAACCAGGAGATGCCATAGAT...AATAGTGGTTAAAGAACGCCTGTACCTGCAGGTTCCAGTTTCAAAGCAATTTAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR GCA 90 bp AAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCCCTACAGCCACAAACCCTAAAGAAAGTTTGTaGCTCTGGTATTCTGTTATT +
Preference number: 4 (lower is better)
Translates to: KTLLISILIFPPFPTATNPKESL*LWYSVI
Trigger: AATAACAGAATACCAGAGGCACAAACTTTCTTTAGG...GTTTGTGGCTGTAGGGAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR GCA 90 bp AAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCCCTACAGCCACAAACGTGTCCAGAATAAAGTaGTTCAAGTTGATGAACAAA +
Preference number: 4 (lower is better)
Translates to: KTLLISILIFPPFPTATNVSRIK*FKLMNK
Trigger: TTTGTTCATCAACTTGAAGCACTTTATTCTGGACAC...GTTTGTGGCTGTAGGGAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS GCA 90 bp CCCAGGGCCTCCAGCTCTCGGTGCAGCTGCGCCCGCGGTCCCAGCTaGGCCGTCTCCTCAGCTGGGATCCGCACCAGCAGCATGGGCAGG +
Preference number: 5 (lower is better)
Translates to: PRASSSRCSCARGPS*AVSSAGIRTSSMGR
Trigger: CCTGCCCATGCTGCTGGTGCGGATCCCAGCTGAGGAGACGGCGCAGCTGGGACCGCGGGCGCAGCTGCACCGAGAGCTGGAGGCCCTGGG
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CCA 90 bp CCTCAGCTGGGATCCGCACCAGCAGCATGGGCAGGACCCGCTCCATaGCCCCGGCACAGCCGGGGGAGGCAGCACTTCCGGGCCCTGGCT +
Preference number: 5 (lower is better)
Translates to: PQLGSAPAAWAGPAP*PRHSRGRQHFRALA
Trigger: AGCCAGGGCCCGGAAGTGCTGCCTCCCCCGGCTGTGCCGGGGCCATGGAGCGGGTCCTGCCCATGCTGCTGGTGCGGATCCCAGCTGAGG
73% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CCA 90 bp GTCCCAGCTGCGCCGTCTCCTCAGCTGGGATCCGCACCAGCAGCATaGGCAGGACCCGCTCCATGGCCCCGGCACAGCCGGGGGAGGCAG +
Preference number: 5 (lower is better)
Translates to: VPAAPSPQLGSAPAA*AGPAPWPRHSRGRQ
Trigger: CTGCCTCCCCCGGCTGTGCCGGGGCCATGGAGCGGGTCCTGCCCATGCTGCTGGTGCGGATCCCAGCTGAGGAGACGGCGCAGCTGGGAC
73% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CCA 90 bp CCCTCCAGTTCCTCCACGGGAACCGGCTCTTCTTGGGCAAGCCAGTaGCCAGCCAGAGTGAGCAGCAGATGGCGCTCCTCAAGGCTGCCC +
Preference number: 5 (lower is better)
Translates to: PSSSSTGTGSSWASQ*PARVSSRWRSSRLP
Trigger: GGGCAGCCTTGAGGAGCGCCATCTGCTGCTCACTCTGGCTGGCCACTGGCTTGCCCAAGAAGAGCCGGTTCCCGTGGAGGAACTGGAGGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS TCA 90 bp CCACGGGAACCGGCTCTTCTTGGGCAAGCCAGTGGCCAGCCAGAGTaGGCAGCAGATGGCGCTCCTCAAGGCTGCCCTGTTCAGCAGGGT +
Preference number: 5 (lower is better)
Translates to: PREPALLGQASGQPE*AADGAPQGCPVQQG
Trigger: ACCCTGCTGAACAGGGCAGCCTTGAGGAGCGCCATCTGCTGCTCACTCTGGCTGGCCACTGGCTTGCCCAAGAAGAGCCGGTTCCCGTGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CCA 90 bp GGCTCTTCTTGGGCAAGCCAGTGGCCAGCCAGAGTGAGCAGCAGATaGCGCTCCTCAAGGCTGCCCTGTTCAGCAGGGTGCTCACTCACC +
Preference number: 5 (lower is better)
Translates to: GSSWASQWPARVSSR*RSSRLPCSAGCSLT
Trigger: GGTGAGTGAGCACCCTGCTGAACAGGGCAGCCTTGAGGAGCGCCATCTGCTGCTCACTCTGGCTGGCCACTGGCTTGCCCAAGAAGAGCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS GCA 90 bp GTGAGCAGCAGATGGCGCTCCTCAAGGCTGCCCTGTTCAGCAGGGTaGTCACTCACCTCGGGGGCTTGGCTAGAGAAGAAGGAAGAGGCT +
Preference number: 5 (lower is better)
Translates to: VSSRWRSSRLPCSAG*SLTSGAWLEKKEEA
Trigger: AGCCTCTTCCTTCTTCTCTAGCCAAGCCCCCGAGGTGAGTGAGCACCCTGCTGAACAGGGCAGCCTTGAGGAGCGCCATCTGCTGCTCAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CCA 90 bp GAGAGGCTGGGCTTGGCTTCCTCTTCAGCCCCTCCACATGTGTGCTaGGCGACGCGGCAGATCCAAATCTGTTTCTCCAGCCCCTCCAGT +
Preference number: 5 (lower is better)
Translates to: ERLGLASSSAPPHVC*ATRQIQICFSSPSS
Trigger: ACTGGAGGGGCTGGAGAAACAGATTTGGATCTGCCGCGTCGCCCAGCACACATGTGGAGGGGCTGAAGAGGAAGCCAAGCCCAGCCTCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CCA 90 bp GGGGTGTGGTCAGCAGATTCCAGGGACTCCAAACGCAAAGCACTCTaGAACCACGGAGCACAGCAGGAAACCTCTGGTTCCGAGCCCCTC +
Preference number: 5 (lower is better)
Translates to: GVWSADSRDSKRKAL*NHGAQQETSGSEPL
Trigger: GAGGGGCTCGGAACCAGAGGTTTCCTGCTGTGCTCCGTGGTTCCAGAGTGCTTTGCGTTTGGAGTCCCTGGAATCTGCTGACCACACCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CCA 90 bp CGGCACTTGAGAGGAGGGCACGGATCTCTGAGTGCAAGTCTTCCATaGTGGCTTCTGCGGAGGCCAAGGCTCTGCAGTGCAACACCAGCA +
Preference number: 5 (lower is better)
Translates to: RHLRGGHGSLSASLP*WLLRRPRLCSATPA
Trigger: TGCTGGTGTTGCACTGCAGAGCCTTGGCCTCCGCAGAAGCCACCATGGAAGACTTGCACTCAGAGATCCGTGCCCTCCTCTCAAGTGCCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CCA 90 bp GTGAGCATGCGGGCGGCTTGCAGGACTCTGGTGATGCCTTCCATGTaGCACGTGAAGGTAAAGCAGTGGTGGGCCAGGATCAGGAGCTCT +
Preference number: 5 (lower is better)
Translates to: VSMRAACRTLVMPSM*HVKVKQWWARIRSS
Trigger: AGAGCTCCTGATCCTGGCCCACCACTGCTTTACCTTCACGTGCCACATGGAAGGCATCACCAGAGTCCTGCAAGCCGCCCGCATGCTCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS GCA 90 bp GGTCTCCAAGTCCCAGAGGCCGATGGTGCAGCTGGTCGCTCCTACTaGCCAGGTAAACAGTGCAGTAAATCCCGTCACAGACAGGCACGT +
Preference number: 5 (lower is better)
Translates to: GLQVPEADGAAGRSY*PGKQCSKSRHRQAR
Trigger: ACGTGCCTGTCTGTGACGGGATTTACTGCACTGTTTACCTGGGCAGTAGGAGCGACCAGCTGCACCATCGGCCTCTGGGACTTGGAGACC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CCA 90 bp AAGAAAGTTCAGCAGCAGCCAACTTGTGTTGAGAGAGGCTGGGCTTaGCTTCCTCTTCAGCCCCTCCACATGTGTGCTGGGCGACGCGGC +
Preference number: 5 (lower is better)
Translates to: KKVQQQPTCVERGWA*LPLQPLHMCAGRRG
Trigger: GCCGCGTCGCCCAGCACACATGTGGAGGGGCTGAAGAGGAAGCCAAGCCCAGCCTCTCTCAACACAAGTTGGCTGCTGCTGAACTTTCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CCA 90 bp ACTCTGGTGATGCCTTCCATGTGGCACGTGAAGGTAAAGCAGTGGTaGGCCAGGATCAGGAGCTCTGTGGTGCAAGACAGCTCCCCGTGG +
Preference number: 5 (lower is better)
Translates to: TLVMPSMWHVKVKQW*ARIRSSVVQDSSPW
Trigger: CCACGGGGAGCTGTCTTGCACCACAGAGCTCCTGATCCTGGCCCACCACTGCTTTACCTTCACGTGCCACATGGAAGGCATCACCAGAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS GCA 90 bp ACAGACAGGCACGTGAGCTCCGTGGGCTGCTCATGTTCACTCAGGTaGATTGTCTTCCACGGCCTTCCTGGATCACTGCTCTTCACGTGC +
Preference number: 5 (lower is better)
Translates to: TDRHVSSVGCSCSLR*IVFHGLPGSLLFTC
Trigger: GCACGTGAAGAGCAGTGATCCAGGAAGGCCGTGGAAGACAATGCACCTGAGTGAACATGAGCAGCCCACGGAGCTCACGTGCCTGTCTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CCA 90 bp ACGTCTGGCCCGTCAGAGAAGAGCTGCTCAGTGCCAACAAACAGTTaGAGGAGTTTCCCCAGCTCATACTGCGTCTCACACTGCTGCGGC +
Preference number: 5 (lower is better)
Translates to: TSGPSEKSCSVPTNS*RSFPSSYCVSHCCG
Trigger: GCCGCAGCAGTGTGAGACGCAGTATGAGCTGGGGAAACTCCTCCAACTGTTTGTTGGCACTGAGCAGCTCTTCTCTGACGGGCCAGACGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CCA 90 bp CACTTGAGAGGAGGGCACGGATCTCTGAGTGCAAGTCTTCCATGGTaGCTTCTGCGGAGGCCAAGGCTCTGCAGTGCAACACCAGCACTA +
Preference number: 5 (lower is better)
Translates to: HLRGGHGSLSASLPW*LLRRPRLCSATPAL
Trigger: TAGTGCTGGTGTTGCACTGCAGAGCCTTGGCCTCCGCAGAAGCCACCATGGAAGACTTGCACTCAGAGATCCGTGCCCTCCTCTCAAGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CCA 90 bp GTGAGGAGGCGGACCACTAATCCGTACTCCTCATTGGGAGCCAAGTaGTTATCTGTGAGCATGCGGGCGGCTTGCAGGACTCTGGTGATG +
Preference number: 5 (lower is better)
Translates to: VRRRTTNPYSSLGAK*LSVSMRAACRTLVM
Trigger: CATCACCAGAGTCCTGCAAGCCGCCCGCATGCTCACAGATAACCACTTGGCTCCCAATGAGGAGTACGGATTAGTGGTCCGCCTCCTCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS TCA 90 bp CTCGGTTTCCTGGGTCTGAAATTCTTCCATCCACAAGCTGATGCTTaGGCAGTCATGGCGAGCCGTGAGGTGTCTCCACAGGGCTTCCGG +
Preference number: 5 (lower is better)
Translates to: LGFLGLKFFHPQADA*AVMASREVSPQGFR
Trigger: CCGGAAGCCCTGTGGAGACACCTCACGGCTCGCCATGACTGCTCAAGCATCAGCTTGTGGATGGAAGAATTTCAGACCCAGGAAACCGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS GCA 90 bp AATGCCCACTGGCTGCTGGACTCACTGGACAACCTGCTAAAGCCCTaGTGCTCAATGCTGTCCCACACGCCTTCCTCCAAGAGAACAAGC +
Preference number: 5 (lower is better)
Translates to: NAHWLLDSLDNLLKP*CSMLSHTPSSKRTS
Trigger: GCTTGTTCTCTTGGAGGAAGGCGTGTGGGACAGCATTGAGCAGCAGGGCTTTAGCAGGTTGTCCAGTGAGTCCAGCAGCCAGTGGGCATT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS GCA 90 bp GCGATAGGTGTGTCCTTCAGCACTTGGCTGAGGAGACACAGCTTCTaGACGTCTGGCCCGTCAGAGAAGAGCTGCTCAGTGCCAACAAAC +
Preference number: 5 (lower is better)
Translates to: AIGVSFSTWLRRHSF*TSGPSEKSCSVPTN
Trigger: GTTTGTTGGCACTGAGCAGCTCTTCTCTGACGGGCCAGACGTGCAGAAGCTGTGTCTCCTCAGCCAAGTGCTGAAGGACACACCTATCGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CCA 90 bp ACCTCTTCAGCCACTAGTTCAGCCACAGTGTCTGCTTCAAGGCCCTaGGTGTTGATGAAGACCTGGGCTTGTCTACATCGGTCAGGCCGC +
Preference number: 5 (lower is better)
Translates to: TSSATSSATVSASRP*VLMKTWACLHRSGR
Trigger: GCGGCCTGACCGATGTAGACAAGCCCAGGTCTTCATCAACACCCAGGGCCTTGAAGCAGACACTGTGGCTGAACTAGTGGCTGAAGAGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS TCA 90 bp TCTAGAGCGTGGATAGGGATTGAGCACCGTCCCCAACCGTTGAGATaGCAAAGGGAGTCCACAGTGCTGGCGCTGCCGTGGATCATTAGT +
Preference number: 5 (lower is better)
Translates to: SRAWIGIEHRPQPLR*QRESTVLALPWIIS
Trigger: ACTAATGATCCACGGCAGCGCCAGCACTGTGGACTCCCTTTGTCATCTCAACGGTTGGGGACGGTGCTCAATCCCTATCCACGCTCTAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS TCA 90 bp AGAGGACCTGCCGGCAGTAGTTCTTCCCATGGAGGCACTTGCTTATaGGAGTGTGGAGGTTCTGGGCTACCTCATCAGTGGGTGGTACCA +
Preference number: 5 (lower is better)
Translates to: RGPAGSSSSHGGTCL*ECGGSGLPHQWVVP
Trigger: TGGTACCACCCACTGATGAGGTAGCCCAGAACCTCCACACTCTCATAAGCAAGTGCCTCCATGGGAAGAACTACTGCCGGCAGGTCCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS TCA 90 bp TGGGTGTTGATGAAGACCTGGGCTTGTCTACATCGGTCAGGCCGCTaGGAAGCCAAGATTGCTCGGAGCATGGCTTCACTGTCCCTAGCA +
Preference number: 5 (lower is better)
Translates to: WVLMKTWACLHRSGR*EAKIARSMASLSLA
Trigger: TGCTAGGGACAGTGAAGCCATGCTCCGAGCAATCTTGGCTTCTCAGCGGCCTGACCGATGTAGACAAGCCCAGGTCTTCATCAACACCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS GCA 90 bp CATGTTCACTCAGGTGCATTGTCTTCCACGGCCTTCCTGGATCACTaGTCTTCACGTGCTCCTTCTGAGGAAAAGCACACCGGCCACGTG +
Preference number: 5 (lower is better)
Translates to: HVHSGALSSTAFLDH*SSRAPSEEKHTGHV
Trigger: CACGTGGCCGGTGTGCTTTTCCTCAGAAGGAGCACGTGAAGAGCAGTGATCCAGGAAGGCCGTGGAAGACAATGCACCTGAGTGAACATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS GCA 90 bp GTCCCACACGCCTTCCTCCAAGAGAACAAGCAGCTCTTCTGTGGCTaGTCTGTCACCGTCAGCAAGCTTAGACAGCTTCTCAGCCAGAGA +
Preference number: 5 (lower is better)
Translates to: VPHAFLQENKQLFCG*SVTVSKLRQLLSQR
Trigger: TCTCTGGCTGAGAAGCTGTCTAAGCTTGCTGACGGTGACAGAGCAGCCACAGAAGAGCTGCTTGTTCTCTTGGAGGAAGGCGTGTGGGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS GCA 90 bp GACACAGCTTCTGCACGTCTGGCCCGTCAGAGAAGAGCTGCTCAGTaGCAACAAACAGTTGGAGGAGTTTCCCCAGCTCATACTGCGTCT +
Preference number: 5 (lower is better)
Translates to: DTASARLARQRRAAQ*QQTVGGVSPAHTAS
Trigger: AGACGCAGTATGAGCTGGGGAAACTCCTCCAACTGTTTGTTGGCACTGAGCAGCTCTTCTCTGACGGGCCAGACGTGCAGAAGCTGTGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS GCA 90 bp CTGAGGAGACACAGCTTCTGCACGTCTGGCCCGTCAGAGAAGAGCTaGTCAGTGCCAACAAACAGTTGGAGGAGTTTCCCCAGCTCATAC +
Preference number: 5 (lower is better)
Translates to: LRRHSFCTSGPSEKS*SVPTNSWRSFPSSY
Trigger: GTATGAGCTGGGGAAACTCCTCCAACTGTTTGTTGGCACTGAGCAGCTCTTCTCTGACGGGCCAGACGTGCAGAAGCTGTGTCTCCTCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS GCA 90 bp GACCTGGGCTTGTCTACATCGGTCAGGCCGCTGAGAAGCCAAGATTaGTCGGAGCATGGCTTCACTGTCCCTAGCAGCAACATCTCCATA +
Preference number: 5 (lower is better)
Translates to: DLGLSTSVRPLRSQD*SEHGFTVPSSNISI
Trigger: TATGGAGATGTTGCTGCTAGGGACAGTGAAGCCATGCTCCGAGCAATCTTGGCTTCTCAGCGGCCTGACCGATGTAGACAAGCCCAGGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS GCA 90 bp TCCTCATTGGGAGCCAAGTGGTTATCTGTGAGCATGCGGGCGGCTTaGAGGACTCTGGTGATGCCTTCCATGTGGCACGTGAAGGTAAAG +
Preference number: 5 (lower is better)
Translates to: SSLGAKWLSVSMRAA*RTLVMPSMWHVKVK
Trigger: CTTTACCTTCACGTGCCACATGGAAGGCATCACCAGAGTCCTGCAAGCCGCCCGCATGCTCACAGATAACCACTTGGCTCCCAATGAGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS GCA 90 bp CTCCCAGGGCTGAGACTCAATCAGCTTCAGTTGGATGCAGGCTGCTaGCTCGTGATTCTCTCCTATCTCCCGGCACATACTGAAGCACAG +
Preference number: 5 (lower is better)
Translates to: LPGLRLNQLQLDAGC*LVILSYLPAHTEAQ
Trigger: CTGTGCTTCAGTATGTGCCGGGAGATAGGAGAGAATCACGAGGCAGCAGCCTGCATCCAACTGAAGCTGATTGAGTCTCAGCCCTGGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CCA 90 bp TCTACAGGAGTACACTTCTGGCTGAGAGAAAAACACTGCATGCTCTaGGTCTCCAAGTCCCAGAGGCCGATGGTGCAGCTGGTCGCTCCT +
Preference number: 5 (lower is better)
Translates to: STGVHFWLREKHCML*VSKSQRPMVQLVAP
Trigger: AGGAGCGACCAGCTGCACCATCGGCCTCTGGGACTTGGAGACCCAGAGCATGCAGTGTTTTTCTCTCAGCCAGAAGTGTACTCCTGTAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CCA 90 bp ACAGTTCTCGCTGTCTTCATTCTGAATGACCTGGCTGACACCCCCTaGAGCATACATGGTGGTAGCAAGGGCCAGGAGGGTGTGTCCTTC +
Preference number: 5 (lower is better)
Translates to: TVLAVFILNDLADTP*SIHGGSKGQEGVSF
Trigger: GAAGGACACACCCTCCTGGCCCTTGCTACCACCATGTATGCTCCAGGGGGTGTCAGCCAGGTCATTCAGAATGAAGACAGCGAGAACTGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS TCA 90 bp ACAGCTGCTGGTCTCCGCCAATGTCTACAGGAGTACACTTCTGGCTaGGAGAAAAACACTGCATGCTCTGGGTCTCCAAGTCCCAGAGGC +
Preference number: 5 (lower is better)
Translates to: TAAGLRQCLQEYTSG*EKNTACSGSPSPRG
Trigger: GCCTCTGGGACTTGGAGACCCAGAGCATGCAGTGTTTTTCTCTCAGCCAGAAGTGTACTCCTGTAGACATTGGCGGAGACCAGCAGCTGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS TCA 90 bp TGCAGGCTGCTGCCTCGTGATTCTCTCCTATCTCCCGGCACATACTaGAGCACAGGGCAATCATATTGTGCTTTTCGCTGTCTCCAGGGC +
Preference number: 5 (lower is better)
Translates to: CRLLPRDSLLSPGTY*STGQSYCAFRCLQG
Trigger: GCCCTGGAGACAGCGAAAAGCACAATATGATTGCCCTGTGCTTCAGTATGTGCCGGGAGATAGGAGAGAATCACGAGGCAGCAGCCTGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS GCA 90 bp ACAGGGCTTCCGGGGAGCGCGCTTTGTATTCTTCTGGACTTAGTCTaGGGAGAAGGATACATTCCTGTGTTTGGAGATCCCACCGGTGAG +
Preference number: 5 (lower is better)
Translates to: TGLPGSALCILLDLV*GEGYIPVFGDPTGE
Trigger: CTCACCGGTGGGATCTCCAAACACAGGAATGTATCCTTCTCCGCAGACTAAGTCCAGAAGAATACAAAGCGCGCTCCCCGGAAGCCCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CCA 90 bp AGGCACAGCTGCTGGTCTCCGCCAATGTCTACAGGAGTACACTTCTaGCTGAGAGAAAAACACTGCATGCTCTGGGTCTCCAAGTCCCAG +
Preference number: 5 (lower is better)
Translates to: RHSCWSPPMSTGVHF*LREKHCMLWVSKSQ
Trigger: CTGGGACTTGGAGACCCAGAGCATGCAGTGTTTTTCTCTCAGCCAGAAGTGTACTCCTGTAGACATTGGCGGAGACCAGCAGCTGTGCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS TCA 90 bp AAATCTCATTCCTCATGTGACTGTGGCAGCAAGTGCCCTGCTCAATaGTGTCAGCACTCAGAGGGGGCCACTTGCTCTGCTGAGGTGACT +
Preference number: 5 (lower is better)
Translates to: KSHSSCDCGSKCPAQ*CQHSEGATCSAEVT
Trigger: AGTCACCTCAGCAGAGCAAGTGGCCCCCTCTGAGTGCTGACATCATTGAGCAGGGCACTTGCTGCCACAGTCACATGAGGAATGAGATTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS TCA 90 bp GCAATTCTAAGAAGCAGACACAGGCAGCCCCTACCGAAGGGTTGGTaGAGGAAGAGAGCCCTAAGGTATAGGCCTCCTTGCCTACTTGCT +
Preference number: 5 (lower is better)
Translates to: AILRSRHRQPLPKGW*RKRALRYRPPCLLA
Trigger: AGCAAGTAGGCAAGGAGGCCTATACCTTAGGGCTCTCTTCCTTCACCAACCCTTCGGTAGGGGCTGCCTGTGTCTGCTTCTTAGAATTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CCA 90 bp TCAAGGCTGCCCTGTTCAGCAGGGTGCTCACTCACCTCGGGGGCTTaGCTAGAGAAGAAGGAAGAGGCTGCTCTCTTTGAAATAGAGTTT +
Preference number: 5 (lower is better)
Translates to: SRLPCSAGCSLTSGA*LEKKEEAALFEIEF
Trigger: AAACTCTATTTCAAAGAGAGCAGCCTCTTCCTTCTTCTCTAGCCAAGCCCCCGAGGTGAGTGAGCACCCTGCTGAACAGGGCAGCCTTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CCA 90 bp TATCAAAAGAAAGTTCAGCAGCAGCCAACTTGTGTTGAGAGAGGCTaGGCTTGGCTTCCTCTTCAGCCCCTCCACATGTGTGCTGGGCGA +
Preference number: 5 (lower is better)
Translates to: YQKKVQQQPTCVERG*AWLPLQPLHMCAGR
Trigger: TCGCCCAGCACACATGTGGAGGGGCTGAAGAGGAAGCCAAGCCCAGCCTCTCTCAACACAAGTTGGCTGCTGCTGAACTTTCTTTTGATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS TCA 90 bp CTCAATGATGTCAGCACTCAGAGGGGGCCACTTGCTCTGCTGAGGTaGCTCGGTTTCCTGGGTCTGAAATTCTTCCATCCACAAGCTGAT +
Preference number: 5 (lower is better)
Translates to: LNDVSTQRGPLALLR*LGFLGLKFFHPQAD
Trigger: ATCAGCTTGTGGATGGAAGAATTTCAGACCCAGGAAACCGAGTCACCTCAGCAGAGCAAGTGGCCCCCTCTGAGTGCTGACATCATTGAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS TCA 90 bp CCTCCTTGCCTACTTGCTGGATCAGTTGTTTGGGAGTCTTACTCTTaGTCAACTCCTGGACCAGAAAGGTGCCAAAGGCAAACGACGGGC +
Preference number: 5 (lower is better)
Translates to: PPCLLAGSVVWESYS*STPGPERCQRQTTG
Trigger: GCCCGTCGTTTGCCTTTGGCACCTTTCTGGTCCAGGAGTTGATCAAGAGTAAGACTCCCAAACAACTGATCCAGCAAGTAGGCAAGGAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS TCA 90 bp GCAAGTCAAATATGTACGTCATCTCATTGTAGCGCCCGATGCCAGTaGGGAGGCGGACCACTAATCCGTACTCCTCATTGGGAGCCAAGT +
Preference number: 5 (lower is better)
Translates to: ASQICTSSHCSARCQ*GGGPLIRTPHWEPS
Trigger: ACTTGGCTCCCAATGAGGAGTACGGATTAGTGGTCCGCCTCCTCACTGGCATCGGGCGCTACAATGAGATGACGTACATATTTGACTTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS GCA 90 bp TGGCACACTCTGCTTGCTTCATGCACACAGCCACCATCCAGCAGCTaGCCGATCAAAGTGTTCAGTGACTCCTGCTCTTTGTGTTTCAGT +
Preference number: 5 (lower is better)
Translates to: WHTLLASCTQPPSSS*PIKVFSDSCSLCFS
Trigger: ACTGAAACACAAAGAGCAGGAGTCACTGAACACTTTGATCGGGCAGCTGCTGGATGGTGGCTGTGTGCATGAAGCAAGCAGAGTGTGCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CAA 90 bp CACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGGGGGGGAACCGGCTCTTCTaGGGCAAGCCAGTGGCCAGC +
Preference number: 5 (lower is better)
Translates to: HKRLVQYGIFLGFSTQMGGNRLF*GKPVAS
Trigger: GCTGGCCACTGGCTTGCCCAAGAAGAGCCGGTTCCC...CCCCATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTG
52% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS GCA 90 bp TCTACATTCCCGCTGAAAGTTCTCAGTGCTGTAGCTGGAAATGACTaGAGGGCTAATGGCGATAGGTGTGTCCTTCAGCACTTGGCTGAG +
Preference number: 5 (lower is better)
Translates to: STFPLKVLSAVAGND*RANGDRCVLQHLAE
Trigger: CTCAGCCAAGTGCTGAAGGACACACCTATCGCCATTAGCCCTGCAGTCATTTCCAGCTACAGCACTGAGAACTTTCAGCGGGAATGTAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CAA 90 bp CACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGGGGCGCCAAGGAAAGCACTaGGAGACTGCCCGCAGCCGT +
Preference number: 5 (lower is better)
Translates to: HKRLVQYGIFLGFSTQMGRQGKH*ETARSR
Trigger: ACGGCTGCGGGCAGTCTCCAAGTGCTTTCCTTGGCG...CCCCATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS TCA 90 bp AGGTGTAGAGAAGATGCTGTAGGCCGTGCTCTAAACAGTAGAGGATaGACCGGGAATGAAAGTCACACCCTGCACGGGATTTGTAGCTCT +
Preference number: 5 (lower is better)
Translates to: RCREDAVGRALNSRG*TGNESHTLHGICSS
Trigger: AGAGCTACAAATCCCGTGCAGGGTGTGACTTTCATTCCCGGTTCATCCTCTACTGTTTAGAGCACGGCCTACAGCATCTTCTCTACACCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS TCA 90 bp TCTCACTGCCTCAGCCAGGAGCCAGCTCCAAGAGGTGGACTCATCTaGGCACCGGTGGAGAATTTCAAAGAAATTACTCGTTTCTCCTTT +
Preference number: 5 (lower is better)
Translates to: SHCLSQEPAPRGGLI*APVENFKEITRFSF
Trigger: AAAGGAGAAACGAGTAATTTCTTTGAAATTCTCCACCGGTGCTCAGATGAGTCCACCTCTTGGAGCTGGCTCCTGGCTGAGGCAGTGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS GCA 90 bp GTGATGGTCCTCTACAGAGATCTGAATGTGTCCCATTGCTTCAGCTaGAACCTTGTCCTCCACGGAGGTGACAATCCAAACACAGAGACA +
Preference number: 5 (lower is better)
Translates to: VMVLYRDLNVSHCFS*NLVLHGGDNPNTET
Trigger: TGTCTCTGTGTTTGGATTGTCACCTCCGTGGAGGACAAGGTTGCAGCTGAAGCAATGGGACACATTCAGATCTCTGTAGAGGACCATCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS GCA 90 bp ACAGCTCCCCGTGGGGGACAGAGGGAATCTTGTCCAACAACTTCATaGCTACCAATGTACGGTCTTGACACAAAGCAGTTAGCTGAAGAA +
Preference number: 5 (lower is better)
Translates to: TAPRGGQRESCPTTS*LPMYGLDTKQLAEE
Trigger: TTCTTCAGCTAACTGCTTTGTGTCAAGACCGTACATTGGTAGGCATGAAGTTGTTGGACAAGATTCCCTCTGTCCCCCACGGGGAGCTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CAA 90 bp GTTCCCTACAGCCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAAGCAGCCAACTTGTGTaGAGAGAGGCTGGGCTTGGC +
Preference number: 5 (lower is better)
Translates to: VPYSHKRLVQYGIFLGFSSSQLV*REAGLG
Trigger: GCCAAGCCCAGCCTCTCTCAACACAAGTTGGCTGCT...TGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGGCTGTAGGGAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CAA 90 bp CAAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCCCTACAGCCACAAAGAGCATGCGGGCGGCTaGCAGGACTCTGGTGATGCC +
Preference number: 5 (lower is better)
Translates to: QNTSDLNTNFSSVPYSHKEHAGG*QDSGDA
Trigger: GGCATCACCAGAGTCCTGCAAGCCGCCCGCATGCTC...TTTGTGGCTGTAGGGAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS GCA 90 bp AACAAAATCAGAGACAGACCATCATCTGTCAAAGCAAGGCACAGCTaGTGGTCTCCGCCAATGTCTACAGGAGTACACTTCTGGCTGAGA +
Preference number: 5 (lower is better)
Translates to: NKIRDRPSSVKARHS*WSPPMSTGVHFWLR
Trigger: TCTCAGCCAGAAGTGTACTCCTGTAGACATTGGCGGAGACCAGCAGCTGTGCCTTGCTTTGACAGATGATGGTCTGTCTCTGATTTTGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS GCA 90 bp GGAACGAGCATCTTCATCTCTACGCTTGGAGCCCAAAATTACATTTaGCATTTTCAGGTCAACTCTGAGCTTGAGGCTGCTGAGGCCAAG +
Preference number: 5 (lower is better)
Translates to: GTSIFISTLGAQNYI*HFQVNSELEAAEAK
Trigger: CTTGGCCTCAGCAGCCTCAAGCTCAGAGTTGACCTGAAAATGGCAAATGTAATTTTGGGCTCCAAGCGTAGAGATGAAGATGCTCGTTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CCA 90 bp TTTCATGTTGTGGGCAGAGTTAACCAGGTCGTCTTCATCTATCCCTaGAGGCCCTTCAATAGGAAGGTCTTCCAGTGTTCCTTCACACAG +
Preference number: 5 (lower is better)
Translates to: FHVVGRVNQVVFIYP*RPFNRKVFQCSFTQ
Trigger: CTGTGTGAAGGAACACTGGAAGACCTTCCTATTGAAGGGCCTCCAGGGATAGATGAAGACGACCTGGTTAACTCTGCCCACAACATGAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CCA 90 bp AAAATCAGAGACAGACCATCATCTGTCAAAGCAAGGCACAGCTGCTaGTCTCCGCCAATGTCTACAGGAGTACACTTCTGGCTGAGAGAA +
Preference number: 5 (lower is better)
Translates to: KIRDRPSSVKARHSC*SPPMSTGVHFWLRE
Trigger: TTCTCTCAGCCAGAAGTGTACTCCTGTAGACATTGGCGGAGACCAGCAGCTGTGCCTTGCTTTGACAGATGATGGTCTGTCTCTGATTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CAA 90 bp CACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGGGGGCTTCAGCTGCAACCTaGTCCTCCACGGAGGTGACA +
Preference number: 5 (lower is better)
Translates to: HKRLVQYGIFLGFSTQMGASAAT*SSTEVT
Trigger: TGTCACCTCCGTGGAGGACAAGGTTGCAGCTGAAGC...CCCCATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CAA 90 bp AAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCCCTACAGCCACAAACCAGGCTGTGCGGCACTaGAGAGGAGGGCACGGATCT +
Preference number: 5 (lower is better)
Translates to: KTLLISILIFPPFPTATNQAVRH*RGGHGS
Trigger: AGATCCGTGCCCTCCTCTCAAGTGCCGCACAGCCTG...GTTTGTGGCTGTAGGGAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CAA 90 bp GTTCCCTACAGCCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAGCTGAGAAGCCAAGATaGCTCGGAGCATGGCTTCAC +
Preference number: 5 (lower is better)
Translates to: VPYSHKRLVQYGIFLGFSAEKPR*LGAWLH
Trigger: GTGAAGCCATGCTCCGAGCAATCTTGGCTTCTCAGC...TGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGGCTGTAGGGAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CCA 90 bp ATTCATATACGAGCAGCTCATAATCTTCTCTGGCAACAAGCAGCTTaGGCCTGTCTCTTGATGTGCTGTTCTGAGACTCCTCCCATAGGA +
Preference number: 5 (lower is better)
Translates to: IHIRAAHNLLWQQAA*ACLLMCCSETPPIG
Trigger: TCCTATGGGAGGAGTCTCAGAACAGCACATCAAGAGACAGGCCCAAGCTGCTTGTTGCCAGAGAAGATTATGAGCTGCTCGTATATGAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CCA 90 bp AGTGGGGAATCCTTAATAAAGAGCTGGAAACCTCGGATGAGAGTGTaGCTCTTGCGTCTTGTCAATACAGTTCTCCAGATGATGGACAGG +
Preference number: 5 (lower is better)
Translates to: SGESLIKSWKPRMRV*LLRLVNTVLQMMDR
Trigger: CCTGTCCATCATCTGGAGAACTGTATTGACAAGACGCAAGAGCCACACTCTCATCCGAGGTTTCCAGCTCTTTATTAAGGATTCCCCACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CAA 90 bp GTTCCCTACAGCCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCACCTATAGCTAGTGTGTaGGCAGACTGCCAGACGAAC +
Preference number: 5 (lower is better)
Translates to: VPYSHKRLVQYGIFLGFSPIASV*ADCQTN
Trigger: GTTCGTCTGGCAGTCTGCCAACACACTAGCTATAGG...TGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGGCTGTAGGGAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CAA 90 bp CAAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCCCTACAGCCACAAAGCCCCTACCGAAGGGTaGGTGAAGGAAGAGAGCCCT +
Preference number: 5 (lower is better)
Translates to: QNTSDLNTNFSSVPYSHKAPTEG*VKEESP
Trigger: AGGGCTCTCTTCCTTCACCAACCCTTCGGTAGGGGC...TTTGTGGCTGTAGGGAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CAA 90 bp CCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGGGCTCAATCAGCTTCAGTaGGATGCAGGCTGCTGCCTC +
Preference number: 5 (lower is better)
Translates to: PQTTSAVWYISGLFNSNGLNQLQ*DAGCCL
Trigger: GAGGCAGCAGCCTGCATCCAACTGAAGCTGATTGAG...CCCATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS TCA 90 bp ACACAAAGCTCCCTTATCTGTTTGTTAAGGAAGGACAGTGTGAGGTaGAGCAGCTGCTCAGCAAAGTGTTTGCTTTGGGTTTCCGAGTCA +
Preference number: 5 (lower is better)
Translates to: TQSSLICLLRKDSVR*SSCSAKCLLWVSES
Trigger: TGACTCGGAAACCCAAAGCAAACACTTTGCTGAGCAGCTGCTTCACCTCACACTGTCCTTCCTTAACAAACAGATAAGGGAGCTTTGTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS GCA 90 bp ACAAACAGTTGGAGGAGTTTCCCCAGCTCATACTGCGTCTCACACTaGTGCGGCATAAGTTTCAAAAGGAAACAAACCTGGTCTTTCATC +
Preference number: 5 (lower is better)
Translates to: TNSWRSFPSSYCVSH*CGISFKRKQTWSFI
Trigger: GATGAAAGACCAGGTTTGTTTCCTTTTGAAACTTATGCCGCAGCAGTGTGAGACGCAGTATGAGCTGGGGAAACTCCTCCAACTGTTTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CAA 90 bp CAAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCCCTACAGCCACAAAAGGTCAACTCTGAGCTaGAGGCTGCTGAGGCCAAGC +
Preference number: 5 (lower is better)
Translates to: QNTSDLNTNFSSVPYSHKRSTLS*RLLRPS
Trigger: GCTTGGCCTCAGCAGCCTCAAGCTCAGAGTTGACCT...TTTGTGGCTGTAGGGAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CAA 90 bp TTAAATTGCTTTGAAACTGGAACCTGCAGGTACAGGCGTTCTTTAACCACTATTGATGAAGACCTGGGCTaGTCTACATCGGTCAGGCCG +
Preference number: 5 (lower is better)
Translates to: LNCFETGTCRYRRSLTTIDEDLG*STSVRP
Trigger: CGGCCTGACCGATGTAGACAAGCCCAGGTCTTCATC...AATAGTGGTTAAAGAACGCCTGTACCTGCAGGTTCCAGTTTCAAAGCAATTTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS TCA 90 bp TGGCCCAAGTTGATAAGCATTGTATTCTGGCCACTGTTGAGAAAGTaGATCTGTAGTGTTATCAACTTGGTGAGCCGGTTACAGTGCAGG +
Preference number: 5 (lower is better)
Translates to: WPKLISIVFWPLLRK*ICSVINLVSRLQCR
Trigger: CCTGCACTGTAACCGGCTCACCAAGTTGATAACACTACAGATTCACTTTCTCAACAGTGGCCAGAATACAATGCTTATCAACTTGGGCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS GCA 90 bp ACTGCTCACACTGGCCTGATTGGTGGGAATCAAAATCTGAGCATTTaGAAGGCTAGCCTGAAAGATGAGTTTGGGATCTGTCAAGTTACT +
Preference number: 5 (lower is better)
Translates to: TAHTGLIGGNQNLSI*KASLKDEFGICQVT
Trigger: AGTAACTTGACAGATCCCAAACTCATCTTTCAGGCTAGCCTTGCAAATGCTCAGATTTTGATTCCCACCAATCAGGCCAGTGTGAGCAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CCA 90 bp CATCTCTCAAGTCAAATTCATATACGAGCAGCTCATAATCTTCTCTaGCAACAAGCAGCTTGGGCCTGTCTCTTGATGTGCTGTTCTGAG +
Preference number: 5 (lower is better)
Translates to: HLSSQIHIRAAHNLL*QQAAWACLLMCCSE
Trigger: CTCAGAACAGCACATCAAGAGACAGGCCCAAGCTGCTTGTTGCCAGAGAAGATTATGAGCTGCTCGTATATGAATTTGACTTGAGAGATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CCA 90 bp CGGTGGAGAATTTCAAAGAAATTACTCGTTTCTCCTTTGTTTTTCTaGAGTTCCTGGAGGCAGCTGTCATCCCTAGAGATGGACCCTGAT +
Preference number: 5 (lower is better)
Translates to: RWRISKKLLVSPLFF*SSWRQLSSLEMDPD
Trigger: ATCAGGGTCCATCTCTAGGGATGACAGCTGCCTCCAGGAACTCCAGAAAAACAAAGGAGAAACGAGTAATTTCTTTGAAATTCTCCACCG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CCA 90 bp ATTTGGATGTGTTCAAAGCAGCGAGCTTGGAGAAGGACAGCTCACTaGCTAAGCTATCAAAAGAAAGTTCAGCAGCAGCCAACTTGTGTT +
Preference number: 5 (lower is better)
Translates to: IWMCSKQRAWRRTAH*LSYQKKVQQQPTCV
Trigger: AACACAAGTTGGCTGCTGCTGAACTTTCTTTTGATAGCTTAGCCAGTGAGCTGTCCTTCTCCAAGCTCGCTGCTTTGAACACATCCAAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CAA 90 bp CCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGGGCCAGGACCTATCAACTaGAAAGGACACCTTGCTCAG +
Preference number: 5 (lower is better)
Translates to: PQTTSAVWYISGLFNSNGPGPIN*KGHLAQ
Trigger: CTGAGCAAGGTGTCCTTTCAAGTTGATAGGTCCTGG...CCCATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CAA 90 bp AAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCCCTACAGCCACAAACGGCCTCCTTGCCTACTaGCTGGATCAGTTGTTTGGG +
Preference number: 5 (lower is better)
Translates to: KTLLISILIFPPFPTATNGLLAY*LDQLFG
Trigger: CCCAAACAACTGATCCAGCAAGTAGGCAAGGAGGCC...GTTTGTGGCTGTAGGGAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CAA 90 bp CAAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCCCTACAGCCACAAAACTGGCACACTCTGCTaGCTTCATGCACACAGCCAC +
Preference number: 5 (lower is better)
Translates to: QNTSDLNTNFSSVPYSHKTGTLC*LHAHSH
Trigger: GTGGCTGTGTGCATGAAGCAAGCAGAGTGTGCCAGT...TTTGTGGCTGTAGGGAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS TCA 90 bp AGAAGATTTTCCTTGCTCTTCAAGAAGAAATCTACTGTGTCCAGCTaGCGATTTTCTATGCCAGCCTCTAGAGCGTGGATAGGGATTGAG +
Preference number: 5 (lower is better)
Translates to: RRFSLLFKKKSTVSS*RFSMPASRAWIGIE
Trigger: CTCAATCCCTATCCACGCTCTAGAGGCTGGCATAGAAAATCGTCAGCTGGACACAGTAGATTTCTTCTTGAAGAGCAAGGAAAATCTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CCA 90 bp GTGCTGGCGCTGCCGTGGATCATTAGTCTGTTCAAAAACTCCTCTTaGGTTAAACCAAACAAAATCAGAGACAGACCATCATCTGTCAAA +
Preference number: 5 (lower is better)
Translates to: VLALPWIISLFKNSS*VKPNKIRDRPSSVK
Trigger: TTTGACAGATGATGGTCTGTCTCTGATTTTGTTTGGTTTAACCCAAGAGGAGTTTTTGAACAGACTAATGATCCACGGCAGCGCCAGCAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CAA 90 bp CAAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCCCTACAGCCACAAAGCTTGGGCCTGTCTCTaGATGTGCTGTTCTGAGACT +
Preference number: 5 (lower is better)
Translates to: QNTSDLNTNFSSVPYSHKAWACL*MCCSET
Trigger: AGTCTCAGAACAGCACATCAAGAGACAGGCCCAAGC...TTTGTGGCTGTAGGGAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CAA 90 bp TTAAATTGCTTTGAAACTGGAACCTGCAGGTACAGGCGTTCTTTAACCACTATTGATACATTCCTGTGTTaGGAGATCCCACCGGTGAGC +
Preference number: 5 (lower is better)
Translates to: LNCFETGTCRYRRSLTTIDTFLC*EIPPVS
Trigger: GCTCACCGGTGGGATCTCCAAACACAGGAATGTATC...AATAGTGGTTAAAGAACGCCTGTACCTGCAGGTTCCAGTTTCAAAGCAATTTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CAA 90 bp CACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGGGGTTGGGAGTCTTACTCTaGATCAACTCCTGGACCAGA +
Preference number: 5 (lower is better)
Translates to: HKRLVQYGIFLGFSTQMGLGVLL*INSWTR
Trigger: TCTGGTCCAGGAGTTGATCAAGAGTAAGACTCCCAA...CCCCATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CAA 90 bp CACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGGGGAACTGCAGCCAGTCATaGGCTTTGGCACATTCTCTA +
Preference number: 5 (lower is better)
Translates to: HKRLVQYGIFLGFSTQMGNCSQS*ALAHSL
Trigger: TAGAGAATGTGCCAAAGCCAATGACTGGCTGCAGTT...CCCCATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CAA 90 bp CACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGGGGACTGACTGTCCAAACTaGAAGAGCTATGGGCTTTCC +
Preference number: 5 (lower is better)
Translates to: HKRLVQYGIFLGFSTQMGTDCPN*KSYGLS
Trigger: GGAAAGCCCATAGCTCTTCAAGTTTGGACAGTCAGT...CCCCATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CAA 90 bp CAGCCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATTTGCTCAGTTTCATGTaGTGGGCAGAGTTAACCAGG +
Preference number: 5 (lower is better)
Translates to: QPQTTSAVWYISGLFNSNLLSFM*WAELTR
Trigger: CCTGGTTAACTCTGCCCACAACATGAAACTGAGCAA...ATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGGCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CAA 90 bp CACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGGGGAGCAAAGTGTTTGCTTaGGGTTTCCGAGTCACTTTC +
Preference number: 5 (lower is better)
Translates to: HKRLVQYGIFLGFSTQMGSKVFA*GFRVTF
Trigger: GAAAGTGACTCGGAAACCCAAAGCAAACACTTTGCT...CCCCATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CAA 90 bp CAGCCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGAACAGCCCAAATCCTaGGCAAGTTCATACAGACAG +
Preference number: 5 (lower is better)
Translates to: QPQTTSAVWYISGLFNSNEQPKS*ASSYRQ
Trigger: CTGTCTGTATGAACTTGCCAAGGATTTGGGCTGTTC...ATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGGCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CAA 90 bp CAAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCCCTACAGCCACAAAGGGACAGAGGGAATCTaGTCCAACAACTTCATGCCT +
Preference number: 5 (lower is better)
Translates to: QNTSDLNTNFSSVPYSHKGTEGI*SNNFMP
Trigger: AGGCATGAAGTTGTTGGACAAGATTCCCTCTGTCCC...TTTGTGGCTGTAGGGAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CCA 90 bp TACATCTCCATAATCAATAGAAGTGGGGAATCCTTAATAAAGAGCTaGAAACCTCGGATGAGAGTGTGGCTCTTGCGTCTTGTCAATACA +
Preference number: 5 (lower is better)
Translates to: YISIINRSGESLIKS*KPRMRVWLLRLVNT
Trigger: TGTATTGACAAGACGCAAGAGCCACACTCTCATCCGAGGTTTCCAGCTCTTTATTAAGGATTCCCCACTTCTATTGATTATGGAGATGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CAA 90 bp CAGCCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATAGGATGAGACATCTGTaGATGAGCAGTAATGACGTG +
Preference number: 5 (lower is better)
Translates to: QPQTTSAVWYISGLFNSNRMRHL*MSSNDV
Trigger: CACGTCATTACTGCTCATCAACAGATGTCTCATCCT...ATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGGCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CAA 90 bp CAAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCCCTACAGCCACAAACCACTTCTGGCCAGCTaGTCTAAAATCTCATTCCTC +
Preference number: 5 (lower is better)
Translates to: QNTSDLNTNFSSVPYSHKPLLAS*SKISFL
Trigger: GAGGAATGAGATTTTAGACAAGCTGGCCAGAAGTGG...TTTGTGGCTGTAGGGAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CAA 90 bp CACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGGGGTTAAGGCCTAAGTATTaGGATGTGTTCAAAGCAGCG +
Preference number: 5 (lower is better)
Translates to: HKRLVQYGIFLGFSTQMGLRPKY*DVFKAA
Trigger: CGCTGCTTTGAACACATCCAAATACTTAGGCCTTAA...CCCCATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CAA 90 bp AGAAGCCACTCTAACAAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCTGCTGGGTTGAAAGGTaGCTTTTCTCCTGTTCCCTC +
Preference number: 5 (lower is better)
Translates to: RSHSNKTLLISILIFPPFCWVER*LFSCSL
Trigger: GAGGGAACAGGAGAAAAGCAACCTTTCAACCCAGCA...GAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTTGTTAGAGTGGCTTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CAA 90 bp AAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCCCTACAGCCACAAACCACAGGGCAATCATATaGTGCTTTTCGCTGTCTCCA +
Preference number: 5 (lower is better)
Translates to: KTLLISILIFPPFPTATNHRAII*CFSLSP
Trigger: TGGAGACAGCGAAAAGCACAATATGATTGCCCTGTG...GTTTGTGGCTGTAGGGAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CAA 90 bp GTTCCCTACAGCCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAAATCCTAAAGAAAGTTaGTGCCTCTGGTATTCTGTT +
Preference number: 5 (lower is better)
Translates to: VPYSHKRLVQYGIFLGFSNPKES*CLWYSV
Trigger: AACAGAATACCAGAGGCACAAACTTTCTTTAGGATT...TGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGGCTGTAGGGAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CAA 90 bp CAGCCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGTGTCCAAGACAGATTaGTGTTTGAAACAGTCCTGT +
Preference number: 5 (lower is better)
Translates to: QPQTTSAVWYISGLFNSNVSKTD*CLKQSC
Trigger: ACAGGACTGTTTCAAACACAAATCTGTCTTGGACAC...ATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGGCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CAA 90 bp CACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGGGGTTTAAGAATCACTTGTaGGTAGAGTACTTCAGCCCA +
Preference number: 5 (lower is better)
Translates to: HKRLVQYGIFLGFSTQMGFKNHL*VEYFSP
Trigger: TGGGCTGAAGTACTCTACCAACAAGTGATTCTTAAA...CCCCATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CAA 90 bp CCACAAACGACTAGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGGGAGAATTCTCAAAGACTaGAAGGAAATACTGACACCT +
Preference number: 5 (lower is better)
Translates to: PQTTSAVWYISGLFNSNGRILKD*KEILTP
Trigger: AGGTGTCAGTATTTCCTTCAAGTCTTTGAGAATTCT...CCCATTTGAGTTGAAAAGCCCAGAAATATACCATACTGCACTAGTCGTTTGTGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CAA 90 bp AAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCCCTACAGCCACAAACTTACTCGTTTCTCCTTaGTTTTTCTGGAGTTCCTGG +
Preference number: 5 (lower is better)
Translates to: KTLLISILIFPPFPTATNLLVSP*FFWSSW
Trigger: CCAGGAACTCCAGAAAAACAAAGGAGAAACGAGTAA...GTTTGTGGCTGTAGGGAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CCA 90 bp TGTGACGACACCTTCATTTACATCAGATTCATCTATGGCATCTCCTaGTTTCCAAGGAAACTTTATCATAAAAGTCCGAAGCTCATTGAT +
Preference number: 5 (lower is better)
Translates to: CDDTFIYIRFIYGIS*FPRKLYHKSPKLID
Trigger: ATCAATGAGCTTCGGACTTTTATGATAAAGTTTCCTTGGAAACCAGGAGATGCCATAGATGAATCTGATGTAAATGAAGGTGTCGTCACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CAA 90 bp CAAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCCCTACAGCCACAAAAGCCCAAAATTACATTaGCCATTTTCAGGTCAACTC +
Preference number: 5 (lower is better)
Translates to: QNTSDLNTNFSSVPYSHKSPKLH*PFSGQL
Trigger: GAGTTGACCTGAAAATGGCAAATGTAATTTTGGGCT...TTTGTGGCTGTAGGGAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS-3UTR CAA 90 bp AGAAGCCACTCTAACAAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTTCAAGACAGATTTGTGTTaGAAACAGTCCTGTTCCTTT +
Preference number: 5 (lower is better)
Translates to: RSHSNKTLLISILIFPPFKTDLC*KQSCSF
Trigger: AAAGGAACAGGACTGTTTCAAACACAAATCTGTCTT...GAACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTTGTTAGAGTGGCTTCT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CCA 72 bp GCGCCGTCTCCTCAGCTGGGATCCGCACCAGCAGCATaGGCAGGACCCGCTCCATGGCCCCGGCACAGCCGG +
Preference number: 6 (lower is better)
Translates to: APSPQLGSAPAA*AGPAPWPRHSR
Trigger: CCGGCTGTGCCGGGGCCATGGAGCGGGTCCTGCCCATGCTGCTGGTGCGGATCCCAGCTGAGGAGACGGCGC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CCA 72 bp CTGCGCCCGCGGTCCCAGCTGCGCCGTCTCCTCAGCTaGGATCCGCACCAGCAGCATGGGCAGGACCCGCTC +
Preference number: 6 (lower is better)
Translates to: LRPRSQLRRLLS*DPHQQHGQDPL
Trigger: GAGCGGGTCCTGCCCATGCTGCTGGTGCGGATCCCAGCTGAGGAGACGGCGCAGCTGGGACCGCGGGCGCAG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CCA 72 bp CTCCCACCCCTGCTGCCCGGCGCCAAGGAAAGCACTTaGAGACTGCCCGCAGCCGTCAGGCTCCCCAGGGCC +
Preference number: 6 (lower is better)
Translates to: LPPLLPGAKEST*RLPAAVRLPRA
Trigger: GGCCCTGGGGAGCCTGACGGCTGCGGGCAGTCTCCAAGTGCTTTCCTTGGCGCCGGGCAGCAGGGGTGGGAG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CAA 72 bp GCTCCCACCCCTGCTGCCCGGCGCCAAGGAAAGCACTaGGAGACTGCCCGCAGCCGTCAGGCTCCCCAGGGC +
Preference number: 6 (lower is better)
Translates to: APTPAARRQGKH*ETARSRQAPQG
Trigger: GCCCTGGGGAGCCTGACGGCTGCGGGCAGTCTCCAAGTGCTTTCCTTGGCGCCGGGCAGCAGGGGTGGGAGC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS TCA 72 bp CCGGCTCTTCTTGGGCAAGCCAGTGGCCAGCCAGAGTaGGCAGCAGATGGCGCTCCTCAAGGCTGCCCTGTT +
Preference number: 6 (lower is better)
Translates to: PALLGQASGQPE*AADGAPQGCPV
Trigger: AACAGGGCAGCCTTGAGGAGCGCCATCTGCTGCTCACTCTGGCTGGCCACTGGCTTGCCCAAGAAGAGCCGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS GCA 72 bp GGCCAGGACACTGAGGATGGGAGCCCGATGTCTCACTaGCTCAGCCAGGAGCCAGCTCCAAGAGGTGGACTC +
Preference number: 6 (lower is better)
Translates to: GQDTEDGSPMSH*LSQEPAPRGGL
Trigger: GAGTCCACCTCTTGGAGCTGGCTCCTGGCTGAGGCAGTGAGACATCGGGCTCCCATCCTCAGTGTCCTGGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CCA 72 bp TCCTCCACGGGAACCGGCTCTTCTTGGGCAAGCCAGTaGCCAGCCAGAGTGAGCAGCAGATGGCGCTCCTCA +
Preference number: 6 (lower is better)
Translates to: SSTGTGSSWASQ*PARVSSRWRSS
Trigger: TGAGGAGCGCCATCTGCTGCTCACTCTGGCTGGCCACTGGCTTGCCCAAGAAGAGCCGGTTCCCGTGGAGGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CAA 90 bp GAAGAGGGACACTCGGGCTCTCCAGGTCCTCAGGCTGTGCGGCACTaGAGAGGAGGGCACGGATCTCTGAGTGCAAGTCTTCCATGGTGG +
Preference number: 6 (lower is better)
Translates to: EEGHSGSPGPQAVRH*RGGHGSLSASLPWW
Trigger: CCACCATGGAAGACTTGCACTCAGAGATCCGTGCCCTCCTCTCAAGTGCCGCACAGCCTGAGGACCTGGAGAGCCCGAGTGTCCCTCTTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CAA 90 bp CGCCCGATGCCAGTGAGGAGGCGGACCACTAATCCGTACTCCTCATaGGGAGCCAAGTGGTTATCTGTGAGCATGCGGGCGGCTTGCAGG +
Preference number: 6 (lower is better)
Translates to: RPMPVRRRTTNPYSS*GAKWLSVSMRAACR
Trigger: CCTGCAAGCCGCCCGCATGCTCACAGATAACCACTTGGCTCCCAATGAGGAGTACGGATTAGTGGTCCGCCTCCTCACTGGCATCGGGCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS TCA 72 bp GGCCTTCCTGGATCACTGCTCTTCACGTGCTCCTTCTaGGGAAAAGCACACCGGCCACGTGGGACATCCCCG +
Preference number: 6 (lower is better)
Translates to: GLPGSLLFTCSF*GKAHRPRGTSP
Trigger: CGGGGATGTCCCACGTGGCCGGTGTGCTTTTCCTCAGAAGGAGCACGTGAAGAGCAGTGATCCAGGAAGGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CAA 72 bp CACTCGGGCTCTCCAGGTCCTCAGGCTGTGCGGCACTaGAGAGGAGGGCACGGATCTCTGAGTGCAAGTCTT +
Preference number: 6 (lower is better)
Translates to: HSGSPGPQAVRH*RGGHGSLSASL
Trigger: AAGACTTGCACTCAGAGATCCGTGCCCTCCTCTCAAGTGCCGCACAGCCTGAGGACCTGGAGAGCCCGAGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS TCA 72 bp TGGATAGGGATTGAGCACCGTCCCCAACCGTTGAGATaGCAAAGGGAGTCCACAGTGCTGGCGCTGCCGTGG +
Preference number: 6 (lower is better)
Translates to: WIGIEHRPQPLR*QRESTVLALPW
Trigger: CCACGGCAGCGCCAGCACTGTGGACTCCCTTTGTCATCTCAACGGTTGGGGACGGTGCTCAATCCCTATCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS GCA 72 bp CTGGGCTTGGCTTCCTCTTCAGCCCCTCCACATGTGTaGTGGGCGACGCGGCAGATCCAAATCTGTTTCTCC +
Preference number: 6 (lower is better)
Translates to: LGLASSSAPPHV*WATRQIQICFS
Trigger: GGAGAAACAGATTTGGATCTGCCGCGTCGCCCAGCACACATGTGGAGGGGCTGAAGAGGAAGCCAAGCCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS GCA 72 bp TGTGCGGCACTTGAGAGGAGGGCACGGATCTCTGAGTaGAAGTCTTCCATGGTGGCTTCTGCGGAGGCCAAG +
Preference number: 6 (lower is better)
Translates to: CAALERRARISE*KSSMVASAEAK
Trigger: CTTGGCCTCCGCAGAAGCCACCATGGAAGACTTGCACTCAGAGATCCGTGCCCTCCTCTCAAGTGCCGCACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS GCA 72 bp GGAGCCAAGTGGTTATCTGTGAGCATGCGGGCGGCTTaGAGGACTCTGGTGATGCCTTCCATGTGGCACGTG +
Preference number: 6 (lower is better)
Translates to: GAKWLSVSMRAA*RTLVMPSMWHV
Trigger: CACGTGCCACATGGAAGGCATCACCAGAGTCCTGCAAGCCGCCCGCATGCTCACAGATAACCACTTGGCTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CCA 72 bp GCAGGGCTAATGGCGATAGGTGTGTCCTTCAGCACTTaGCTGAGGAGACACAGCTTCTGCACGTCTGGCCCG +
Preference number: 6 (lower is better)
Translates to: AGLMAIGVSFST*LRRHSFCTSGP
Trigger: CGGGCCAGACGTGCAGAAGCTGTGTCTCCTCAGCCAAGTGCTGAAGGACACACCTATCGCCATTAGCCCTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CCA 72 bp GGCTTGGCTTCCTCTTCAGCCCCTCCACATGTGTGCTaGGCGACGCGGCAGATCCAAATCTGTTTCTCCAGC +
Preference number: 6 (lower is better)
Translates to: GLASSSAPPHVC*ATRQIQICFSS
Trigger: GCTGGAGAAACAGATTTGGATCTGCCGCGTCGCCCAGCACACATGTGGAGGGGCTGAAGAGGAAGCCAAGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CCA 72 bp GGAGGGCACGGATCTCTGAGTGCAAGTCTTCCATGGTaGCTTCTGCGGAGGCCAAGGCTCTGCAGTGCAACA +
Preference number: 6 (lower is better)
Translates to: GGHGSLSASLPW*LLRRPRLCSAT
Trigger: TGTTGCACTGCAGAGCCTTGGCCTCCGCAGAAGCCACCATGGAAGACTTGCACTCAGAGATCCGTGCCCTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CCA 72 bp AGAGGAGGGCACGGATCTCTGAGTGCAAGTCTTCCATaGTGGCTTCTGCGGAGGCCAAGGCTCTGCAGTGCA +
Preference number: 6 (lower is better)
Translates to: RGGHGSLSASLP*WLLRRPRLCSA
Trigger: TGCACTGCAGAGCCTTGGCCTCCGCAGAAGCCACCATGGAAGACTTGCACTCAGAGATCCGTGCCCTCCTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CAA 72 bp GGGAGCCAAGTGGTTATCTGTGAGCATGCGGGCGGCTaGCAGGACTCTGGTGATGCCTTCCATGTGGCACGT +
Preference number: 6 (lower is better)
Translates to: GSQVVICEHAGG*QDSGDAFHVAR
Trigger: ACGTGCCACATGGAAGGCATCACCAGAGTCCTGCAAGCCGCCCGCATGCTCACAGATAACCACTTGGCTCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CAA 90 bp CACGTCTGGCCCGTCAGAGAAGAGCTGCTCAGTGCCAACAAACAGTaGGAGGAGTTTCCCCAGCTCATACTGCGTCTCACACTGCTGCGG +
Preference number: 6 (lower is better)
Translates to: HVWPVREELLSANKQ*EEFPQLILRLTLLR
Trigger: CCGCAGCAGTGTGAGACGCAGTATGAGCTGGGGAAACTCCTCCAACTGTTTGTTGGCACTGAGCAGCTCTTCTCTGACGGGCCAGACGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS GCA 72 bp CACGTGAGCTCCGTGGGCTGCTCATGTTCACTCAGGTaGATTGTCTTCCACGGCCTTCCTGGATCACTGCTC +
Preference number: 6 (lower is better)
Translates to: HVSSVGCSCSLR*IVFHGLPGSLL
Trigger: GAGCAGTGATCCAGGAAGGCCGTGGAAGACAATGCACCTGAGTGAACATGAGCAGCCCACGGAGCTCACGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS GCA 72 bp GTCCCAGAGGCCGATGGTGCAGCTGGTCGCTCCTACTaGCCAGGTAAACAGTGCAGTAAATCCCGTCACAGA +
Preference number: 6 (lower is better)
Translates to: VPEADGAAGRSY*PGKQCSKSRHR
Trigger: TCTGTGACGGGATTTACTGCACTGTTTACCTGGGCAGTAGGAGCGACCAGCTGCACCATCGGCCTCTGGGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS GCA 72 bp TGGCTGCTGGACTCACTGGACAACCTGCTAAAGCCCTaGTGCTCAATGCTGTCCCACACGCCTTCCTCCAAG +
Preference number: 6 (lower is better)
Translates to: WLLDSLDNLLKP*CSMLSHTPSSK
Trigger: CTTGGAGGAAGGCGTGTGGGACAGCATTGAGCAGCAGGGCTTTAGCAGGTTGTCCAGTGAGTCCAGCAGCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS GCA 72 bp GTGTCCTTCAGCACTTGGCTGAGGAGACACAGCTTCTaGACGTCTGGCCCGTCAGAGAAGAGCTGCTCAGTG +
Preference number: 6 (lower is better)
Translates to: VSFSTWLRRHSF*TSGPSEKSCSV
Trigger: CACTGAGCAGCTCTTCTCTGACGGGCCAGACGTGCAGAAGCTGTGTCTCCTCAGCCAAGTGCTGAAGGACAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CAA 72 bp CCAGTGAGGAGGCGGACCACTAATCCGTACTCCTCATaGGGAGCCAAGTGGTTATCTGTGAGCATGCGGGCG +
Preference number: 6 (lower is better)
Translates to: PVRRRTTNPYSS*GAKWLSVSMRA
Trigger: CGCCCGCATGCTCACAGATAACCACTTGGCTCCCAATGAGGAGTACGGATTAGTGGTCCGCCTCCTCACTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CAA 90 bp TGGCGAGCCGTGAGGTGTCTCCACAGGGCTTCCGGGGAGCGCGCTTaGTATTCTTCTGGACTTAGTCTGCGGAGAAGGATACATTCCTGT +
Preference number: 6 (lower is better)
Translates to: WRAVRCLHRASGERA*YSSGLSLRRRIHSC
Trigger: ACAGGAATGTATCCTTCTCCGCAGACTAAGTCCAGAAGAATACAAAGCGCGCTCCCCGGAAGCCCTGTGGAGACACCTCACGGCTCGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CAA 90 bp CACAGTGTCTGCTTCAAGGCCCTGGGTGTTGATGAAGACCTGGGCTaGTCTACATCGGTCAGGCCGCTGAGAAGCCAAGATTGCTCGGAG +
Preference number: 6 (lower is better)
Translates to: HSVCFKALGVDEDLG*STSVRPLRSQDCSE
Trigger: CTCCGAGCAATCTTGGCTTCTCAGCGGCCTGACCGATGTAGACAAGCCCAGGTCTTCATCAACACCCAGGGCCTTGAAGCAGACACTGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS GCA 72 bp CACAGCTTCTGCACGTCTGGCCCGTCAGAGAAGAGCTaGTCAGTGCCAACAAACAGTTGGAGGAGTTTCCCC +
Preference number: 6 (lower is better)
Translates to: HSFCTSGPSEKS*SVPTNSWRSFP
Trigger: GGGGAAACTCCTCCAACTGTTTGTTGGCACTGAGCAGCTCTTCTCTGACGGGCCAGACGTGCAGAAGCTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS GCA 72 bp CCTCCCAGGGCTGAGACTCAATCAGCTTCAGTTGGATaGAGGCTGCTGCCTCGTGATTCTCTCCTATCTCCC +
Preference number: 6 (lower is better)
Translates to: PPRAETQSASVG*RLLPRDSLLSP
Trigger: GGGAGATAGGAGAGAATCACGAGGCAGCAGCCTGCATCCAACTGAAGCTGATTGAGTCTCAGCCCTGGGAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CCA 72 bp GCTGTCTTCATTCTGAATGACCTGGCTGACACCCCCTaGAGCATACATGGTGGTAGCAAGGGCCAGGAGGGT +
Preference number: 6 (lower is better)
Translates to: AVFILNDLADTP*SIHGGSKGQEG
Trigger: ACCCTCCTGGCCCTTGCTACCACCATGTATGCTCCAGGGGGTGTCAGCCAGGTCATTCAGAATGAAGACAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CCA 72 bp CAGCACTTGGCTGAGGAGACACAGCTTCTGCACGTCTaGCCCGTCAGAGAAGAGCTGCTCAGTGCCAACAAA +
Preference number: 6 (lower is better)
Translates to: QHLAEETQLLHV*PVREELLSANK
Trigger: TTTGTTGGCACTGAGCAGCTCTTCTCTGACGGGCCAGACGTGCAGAAGCTGTGTCTCCTCAGCCAAGTGCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CCA 72 bp CCCTGTTCAGCAGGGTGCTCACTCACCTCGGGGGCTTaGCTAGAGAAGAAGGAAGAGGCTGCTCTCTTTGAA +
Preference number: 6 (lower is better)
Translates to: PCSAGCSLTSGA*LEKKEEAALFE
Trigger: TTCAAAGAGAGCAGCCTCTTCCTTCTTCTCTAGCCAAGCCCCCGAGGTGAGTGAGCACCCTGCTGAACAGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CCA 72 bp ATGCCTTCCATGTGGCACGTGAAGGTAAAGCAGTGGTaGGCCAGGATCAGGAGCTCTGTGGTGCAAGACAGC +
Preference number: 6 (lower is better)
Translates to: MPSMWHVKVKQW*ARIRSSVVQDS
Trigger: GCTGTCTTGCACCACAGAGCTCCTGATCCTGGCCCACCACTGCTTTACCTTCACGTGCCACATGGAAGGCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CCA 72 bp CGGACCACTAATCCGTACTCCTCATTGGGAGCCAAGTaGTTATCTGTGAGCATGCGGGCGGCTTGCAGGACT +
Preference number: 6 (lower is better)
Translates to: RTTNPYSSLGAK*LSVSMRAACRT
Trigger: AGTCCTGCAAGCCGCCCGCATGCTCACAGATAACCACTTGGCTCCCAATGAGGAGTACGGATTAGTGGTCCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CAA 90 bp CTCCTCATTGGGAGCCAAGTGGTTATCTGTGAGCATGCGGGCGGCTaGCAGGACTCTGGTGATGCCTTCCATGTGGCACGTGAAGGTAAA +
Preference number: 6 (lower is better)
Translates to: LLIGSQVVICEHAGG*QDSGDAFHVAREGK
Trigger: TTTACCTTCACGTGCCACATGGAAGGCATCACCAGAGTCCTGCAAGCCGCCCGCATGCTCACAGATAACCACTTGGCTCCCAATGAGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CAA 90 bp ATCCTTGAGGCTTTCCTCCCAGGGCTGAGACTCAATCAGCTTCAGTaGGATGCAGGCTGCTGCCTCGTGATTCTCTCCTATCTCCCGGCA +
Preference number: 6 (lower is better)
Translates to: ILEAFLPGLRLNQLQ*DAGCCLVILSYLPA
Trigger: TGCCGGGAGATAGGAGAGAATCACGAGGCAGCAGCCTGCATCCAACTGAAGCTGATTGAGTCTCAGCCCTGGGAGGAAAGCCTCAAGGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS TCA 72 bp GTCAGCACTCAGAGGGGGCCACTTGCTCTGCTGAGGTaGCTCGGTTTCCTGGGTCTGAAATTCTTCCATCCA +
Preference number: 6 (lower is better)
Translates to: VSTQRGPLALLR*LGFLGLKFFHP
Trigger: TGGATGGAAGAATTTCAGACCCAGGAAACCGAGTCACCTCAGCAGAGCAAGTGGCCCCCTCTGAGTGCTGAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS TCA 72 bp GCCGGCAGTAGTTCTTCCCATGGAGGCACTTGCTTATaGGAGTGTGGAGGTTCTGGGCTACCTCATCAGTGG +
Preference number: 6 (lower is better)
Translates to: AGSSSSHGGTCL*ECGGSGLPHQW
Trigger: CCACTGATGAGGTAGCCCAGAACCTCCACACTCTCATAAGCAAGTGCCTCCATGGGAAGAACTACTGCCGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS TCA 72 bp ATGAAGACCTGGGCTTGTCTACATCGGTCAGGCCGCTaGGAAGCCAAGATTGCTCGGAGCATGGCTTCACTG +
Preference number: 6 (lower is better)
Translates to: MKTWACLHRSGR*EAKIARSMASL
Trigger: CAGTGAAGCCATGCTCCGAGCAATCTTGGCTTCTCAGCGGCCTGACCGATGTAGACAAGCCCAGGTCTTCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS GCA 72 bp TTGTCTACATCGGTCAGGCCGCTGAGAAGCCAAGATTaGTCGGAGCATGGCTTCACTGTCCCTAGCAGCAAC +
Preference number: 6 (lower is better)
Translates to: LSTSVRPLRSQD*SEHGFTVPSSN
Trigger: GTTGCTGCTAGGGACAGTGAAGCCATGCTCCGAGCAATCTTGGCTTCTCAGCGGCCTGACCGATGTAGACAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CCA 72 bp TCAGCAGATTCCAGGGACTCCAAACGCAAAGCACTCTaGAACCACGGAGCACAGCAGGAAACCTCTGGTTCC +
Preference number: 6 (lower is better)
Translates to: SADSRDSKRKAL*NHGAQQETSGS
Trigger: GGAACCAGAGGTTTCCTGCTGTGCTCCGTGGTTCCAGAGTGCTTTGCGTTTGGAGTCCCTGGAATCTGCTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CCA 72 bp AGGATCAGGAGCTCTGTGGTGCAAGACAGCTCCCCGTaGGGGACAGAGGGAATCTTGTCCAACAACTTCATG +
Preference number: 6 (lower is better)
Translates to: RIRSSVVQDSSP*GTEGILSNNFM
Trigger: CATGAAGTTGTTGGACAAGATTCCCTCTGTCCCCCACGGGGAGCTGTCTTGCACCACAGAGCTCCTGATCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CAA 72 bp GTGAGGTGTCTCCACAGGGCTTCCGGGGAGCGCGCTTaGTATTCTTCTGGACTTAGTCTGCGGAGAAGGATA +
Preference number: 6 (lower is better)
Translates to: VRCLHRASGERA*YSSGLSLRRRI
Trigger: TATCCTTCTCCGCAGACTAAGTCCAGAAGAATACAAAGCGCGCTCCCCGGAAGCCCTGTGGAGACACCTCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS TCA 72 bp CTGGGTCTGAAATTCTTCCATCCACAAGCTGATGCTTaGGCAGTCATGGCGAGCCGTGAGGTGTCTCCACAG +
Preference number: 6 (lower is better)
Translates to: LGLKFFHPQADA*AVMASREVSPQ
Trigger: CTGTGGAGACACCTCACGGCTCGCCATGACTGCTCAAGCATCAGCTTGTGGATGGAAGAATTTCAGACCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS GCA 72 bp AGCGATGTAAAGGAAGAGACACTGGCGGGCTCCAGCTaGTCAGAATCTTCTCTGAGAAGAGCCAGGTCCACT +
Preference number: 6 (lower is better)
Translates to: SDVKEETLAGSS*SESSLRRARST
Trigger: AGTGGACCTGGCTCTTCTCAGAGAAGATTCTGAGCAGCTGGAGCCCGCCAGTGTCTCTTCCTTTACATCGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS GCA 72 bp TCAGGTGCATTGTCTTCCACGGCCTTCCTGGATCACTaGTCTTCACGTGCTCCTTCTGAGGAAAAGCACACC +
Preference number: 6 (lower is better)
Translates to: SGALSSTAFLDH*SSRAPSEEKHT
Trigger: GGTGTGCTTTTCCTCAGAAGGAGCACGTGAAGAGCAGTGATCCAGGAAGGCCGTGGAAGACAATGCACCTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS GCA 72 bp CTGCTTGCTTCATGCACACAGCCACCATCCAGCAGCTaGCCGATCAAAGTGTTCAGTGACTCCTGCTCTTTG +
Preference number: 6 (lower is better)
Translates to: LLASCTQPPSSS*PIKVFSDSCSL
Trigger: CAAAGAGCAGGAGTCACTGAACACTTTGATCGGGCAGCTGCTGGATGGTGGCTGTGTGCATGAAGCAAGCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS GCA 72 bp GGCCTGTCGAACACAGGAGTCCTTGGCGTAACTCTCTaGTGCATCCAACATCAGAGTCAGGGCTTTAAGCAG +
Preference number: 6 (lower is better)
Translates to: GLSNTGVLGVTL*CIQHQSQGFKQ
Trigger: CTGCTTAAAGCCCTGACTCTGATGTTGGATGCAGCAGAGAGTTACGCCAAGGACTCCTGTGTTCGACAGGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CCA 72 bp GTTCCAGCACAGCGTATTTACTCACCAGGTCAGGGCTaGAAAAGTGTGGGAGCTGACTGCCTGTGTCTCCTA +
Preference number: 6 (lower is better)
Translates to: VPAQRIYSPGQG*KSVGADCLCLL
Trigger: TAGGAGACACAGGCAGTCAGCTCCCACACTTTTCCAGCCCTGACCTGGTGAGTAAATACGCTGTGCTGGAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CCA 72 bp CCGTCAGAGAAGAGCTGCTCAGTGCCAACAAACAGTTaGAGGAGTTTCCCCAGCTCATACTGCGTCTCACAC +
Preference number: 6 (lower is better)
Translates to: PSEKSCSVPTNS*RSFPSSYCVSH
Trigger: GTGTGAGACGCAGTATGAGCTGGGGAAACTCCTCCAACTGTTTGTTGGCACTGAGCAGCTCTTCTCTGACGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CCA 72 bp AAAGTTCAGCAGCAGCCAACTTGTGTTGAGAGAGGCTaGGCTTGGCTTCCTCTTCAGCCCCTCCACATGTGT +
Preference number: 6 (lower is better)
Translates to: KVQQQPTCVERG*AWLPLQPLHMC
Trigger: ACACATGTGGAGGGGCTGAAGAGGAAGCCAAGCCCAGCCTCTCTCAACACAAGTTGGCTGCTGCTGAACTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CAA 72 bp CCCGTCAGAGAAGAGCTGCTCAGTGCCAACAAACAGTaGGAGGAGTTTCCCCAGCTCATACTGCGTCTCACA +
Preference number: 6 (lower is better)
Translates to: PVREELLSANKQ*EEFPQLILRLT
Trigger: TGTGAGACGCAGTATGAGCTGGGGAAACTCCTCCAACTGTTTGTTGGCACTGAGCAGCTCTTCTCTGACGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CAA 72 bp GTGCAAGACAGCTCCCCGTGGGGGACAGAGGGAATCTaGTCCAACAACTTCATGCCTACCAATGTACGGTCT +
Preference number: 6 (lower is better)
Translates to: VQDSSPWGTEGI*SNNFMPTNVRS
Trigger: AGACCGTACATTGGTAGGCATGAAGTTGTTGGACAAGATTCCCTCTGTCCCCCACGGGGAGCTGTCTTGCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CAA 72 bp GCTTTCCTCCCAGGGCTGAGACTCAATCAGCTTCAGTaGGATGCAGGCTGCTGCCTCGTGATTCTCTCCTAT +
Preference number: 6 (lower is better)
Translates to: AFLPGLRLNQLQ*DAGCCLVILSY
Trigger: ATAGGAGAGAATCACGAGGCAGCAGCCTGCATCCAACTGAAGCTGATTGAGTCTCAGCCCTGGGAGGAAAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS TCA 72 bp ACAAGCAGCTTGGGCCTGTCTCTTGATGTGCTGTTCTaGGACTCCTCCCATAGGAACTGCCTAAAGGGTCCT +
Preference number: 6 (lower is better)
Translates to: TSSLGLSLDVLF*DSSHRNCLKGP
Trigger: AGGACCCTTTAGGCAGTTCCTATGGGAGGAGTCTCAGAACAGCACATCAAGAGACAGGCCCAAGCTGCTTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS TCA 72 bp CTGGCTGAGCTGACCAGCACCAGAACATCCAAGTCCTaGGACACTCTCAGCGATGTAAAGGAAGAGACACTG +
Preference number: 6 (lower is better)
Translates to: LAELTSTRTSKS*DTLSDVKEETL
Trigger: CAGTGTCTCTTCCTTTACATCGCTGAGAGTGTCTCAGGACTTGGATGTTCTGGTGCTGGTCAGCTCAGCCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS GCA 72 bp CCGGGGAGCGCGCTTTGTATTCTTCTGGACTTAGTCTaGGGAGAAGGATACATTCCTGTGTTTGGAGATCCC +
Preference number: 6 (lower is better)
Translates to: PGSALCILLDLV*GEGYIPVFGDP
Trigger: GGGATCTCCAAACACAGGAATGTATCCTTCTCCGCAGACTAAGTCCAGAAGAATACAAAGCGCGCTCCCCGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS GCA 72 bp CCGCTGAAAGTTCTCAGTGCTGTAGCTGGAAATGACTaGAGGGCTAATGGCGATAGGTGTGTCCTTCAGCAC +
Preference number: 6 (lower is better)
Translates to: PLKVLSAVAGND*RANGDRCVLQH
Trigger: GTGCTGAAGGACACACCTATCGCCATTAGCCCTGCAGTCATTTCCAGCTACAGCACTGAGAACTTTCAGCGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS GCA 72 bp TCCCGGCACATACTGAAGCACAGGGCAATCATATTGTaGTTTTCGCTGTCTCCAGGGCGGCAACGTTTGATG +
Preference number: 6 (lower is better)
Translates to: SRHILKHRAIIL*FSLSPGRQRLM
Trigger: CATCAAACGTTGCCGCCCTGGAGACAGCGAAAAGCACAATATGATTGCCCTGTGCTTCAGTATGTGCCGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS GCA 72 bp CTGAGACTCAATCAGCTTCAGTTGGATGCAGGCTGCTaGCTCGTGATTCTCTCCTATCTCCCGGCACATACT +
Preference number: 6 (lower is better)
Translates to: LRLNQLQLDAGC*LVILSYLPAHT
Trigger: AGTATGTGCCGGGAGATAGGAGAGAATCACGAGGCAGCAGCCTGCATCCAACTGAAGCTGATTGAGTCTCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS GCA 72 bp CTGTCGAACACAGGAGTCCTTGGCGTAACTCTCTGCTaGATCCAACATCAGAGTCAGGGCTTTAAGCAGGAG +
Preference number: 6 (lower is better)
Translates to: LSNTGVLGVTLC*IQHQSQGFKQE
Trigger: CTCCTGCTTAAAGCCCTGACTCTGATGTTGGATGCAGCAGAGAGTTACGCCAAGGACTCCTGTGTTCGACAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CCA 72 bp TGCTGGTCTCCGCCAATGTCTACAGGAGTACACTTCTaGCTGAGAGAAAAACACTGCATGCTCTGGGTCTCC +
Preference number: 6 (lower is better)
Translates to: CWSPPMSTGVHF*LREKHCMLWVS
Trigger: GGAGACCCAGAGCATGCAGTGTTTTTCTCTCAGCCAGAAGTGTACTCCTGTAGACATTGGCGGAGACCAGCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CCA 72 bp GACAGACCATCATCTGTCAAAGCAAGGCACAGCTGCTaGTCTCCGCCAATGTCTACAGGAGTACACTTCTGG +
Preference number: 6 (lower is better)
Translates to: DRPSSVKARHSC*SPPMSTGVHFW
Trigger: CCAGAAGTGTACTCCTGTAGACATTGGCGGAGACCAGCAGCTGTGCCTTGCTTTGACAGATGATGGTCTGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CAA 90 bp GCCTCCTTGCCTACTTGCTGGATCAGTTGTTTGGGAGTCTTACTCTaGATCAACTCCTGGACCAGAAAGGTGCCAAAGGCAAACGACGGG +
Preference number: 6 (lower is better)
Translates to: ASLPTCWISCLGVLL*INSWTRKVPKANDG
Trigger: CCCGTCGTTTGCCTTTGGCACCTTTCTGGTCCAGGAGTTGATCAAGAGTAAGACTCCCAAACAACTGATCCAGCAAGTAGGCAAGGAGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CAA 90 bp CCTCATCAGTGGGTGGTACCATCACAAATGACTGACTGTCCAAACTaGAAGAGCTATGGGCTTTCCGAAGAGGGACACTCGGGCTCTCCA +
Preference number: 6 (lower is better)
Translates to: PHQWVVPSQMTDCPN*KSYGLSEEGHSGSP
Trigger: TGGAGAGCCCGAGTGTCCCTCTTCGGAAAGCCCATAGCTCTTCAAGTTTGGACAGTCAGTCATTTGTGATGGTACCACCCACTGATGAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS TCA 72 bp CTCAGCCAGGAGCCAGCTCCAAGAGGTGGACTCATCTaGGCACCGGTGGAGAATTTCAAAGAAATTACTCGT +
Preference number: 6 (lower is better)
Translates to: LSQEPAPRGGLI*APVENFKEITR
Trigger: ACGAGTAATTTCTTTGAAATTCTCCACCGGTGCTCAGATGAGTCCACCTCTTGGAGCTGGCTCCTGGCTGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS TCA 72 bp TGTGGCTCTTGCGTCTTGTCAATACAGTTCTCCAGATaGTGGACAGGTCCTTCAGGCTCCAGTGATGGTCCT +
Preference number: 6 (lower is better)
Translates to: CGSCVLSIQFSR*WTGPSGSSDGP
Trigger: AGGACCATCACTGGAGCCTGAAGGACCTGTCCATCATCTGGAGAACTGTATTGACAAGACGCAAGAGCCACA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS TCA 72 bp GCCACCATCCAGCAGCTGCCCGATCAAAGTGTTCAGTaGCTCCTGCTCTTTGTGTTTCAGTCTGTTCTCACA +
Preference number: 6 (lower is better)
Translates to: ATIQQLPDQSVQ*LLLFVFQSVLT
Trigger: TGTGAGAACAGACTGAAACACAAAGAGCAGGAGTCACTGAACACTTTGATCGGGCAGCTGCTGGATGGTGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS GCA 72 bp TCCAGCAGCTGCCCGATCAAAGTGTTCAGTGACTCCTaGTCTTTGTGTTTCAGTCTGTTCTCACACGTCGTC +
Preference number: 6 (lower is better)
Translates to: SSSCPIKVFSDS*SLCFSLFSHVV
Trigger: GACGACGTGTGAGAACAGACTGAAACACAAAGAGCAGGAGTCACTGAACACTTTGATCGGGCAGCTGCTGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS GCA 72 bp GATCCTGGCTATAGAAACGGAAATACTGGCACACTCTaGTTGCTTCATGCACACAGCCACCATCCAGCAGCT +
Preference number: 6 (lower is better)
Translates to: DPGYRNGNTGTL*LLHAHSHHPAA
Trigger: AGCTGCTGGATGGTGGCTGTGTGCATGAAGCAAGCAGAGTGTGCCAGTATTTCCGTTTCTATAGCCAGGATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CCA 72 bp CGAGCAGCTCATAATCTTCTCTGGCAACAAGCAGCTTaGGCCTGTCTCTTGATGTGCTGTTCTGAGACTCCT +
Preference number: 6 (lower is better)
Translates to: RAAHNLLWQQAA*ACLLMCCSETP
Trigger: AGGAGTCTCAGAACAGCACATCAAGAGACAGGCCCAAGCTGCTTGTTGCCAGAGAAGATTATGAGCTGCTCG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CCA 72 bp ATGTTCACTCAGGTGCATTGTCTTCCACGGCCTTCCTaGATCACTGCTCTTCACGTGCTCCTTCTGAGGAAA +
Preference number: 6 (lower is better)
Translates to: MFTQVHCLPRPS*ITALHVLLLRK
Trigger: TTTCCTCAGAAGGAGCACGTGAAGAGCAGTGATCCAGGAAGGCCGTGGAAGACAATGCACCTGAGTGAACAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CAA 90 bp CCATCCAGCAGCTGCCCGATCAAAGTGTTCAGTGACTCCTGCTCTTaGTGTTTCAGTCTGTTCTCACACGTCGTCTTGGATGGAAGATCA +
Preference number: 6 (lower is better)
Translates to: PSSSCPIKVFSDSCS*CFSLFSHVVLDGRS
Trigger: TGATCTTCCATCCAAGACGACGTGTGAGAACAGACTGAAACACAAAGAGCAGGAGTCACTGAACACTTTGATCGGGCAGCTGCTGGATGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS TCA 72 bp CAGAAGCCAGCTTCAAGTGGCTCTGAAGGACAGGACTaGAATACTGAAGAAGAGATTCCACCTCTGCTGGGT +
Preference number: 6 (lower is better)
Translates to: QKPASSGSEGQD*NTEEEIPPLLG
Trigger: ACCCAGCAGAGGTGGAATCTCTTCTTCAGTATTTCAGTCCTGTCCTTCAGAGCCACTTGAAGCTGGCTTCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS TCA 72 bp CTGCCTCGTGATTCTCTCCTATCTCCCGGCACATACTaGAGCACAGGGCAATCATATTGTGCTTTTCGCTGT +
Preference number: 6 (lower is better)
Translates to: LPRDSLLSPGTY*STGQSYCAFRC
Trigger: ACAGCGAAAAGCACAATATGATTGCCCTGTGCTTCAGTATGTGCCGGGAGATAGGAGAGAATCACGAGGCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS GCA 72 bp CTCTACAGAGATCTGAATGTGTCCCATTGCTTCAGCTaGAACCTTGTCCTCCACGGAGGTGACAATCCAAAC +
Preference number: 6 (lower is better)
Translates to: LYRDLNVSHCFS*NLVLHGGDNPN
Trigger: GTTTGGATTGTCACCTCCGTGGAGGACAAGGTTGCAGCTGAAGCAATGGGACACATTCAGATCTCTGTAGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS GCA 72 bp TGGAGGAGTTTCCCCAGCTCATACTGCGTCTCACACTaGTGCGGCATAAGTTTCAAAAGGAAACAAACCTGG +
Preference number: 6 (lower is better)
Translates to: WRSFPSSYCVSH*CGISFKRKQTW
Trigger: CCAGGTTTGTTTCCTTTTGAAACTTATGCCGCAGCAGTGTGAGACGCAGTATGAGCTGGGGAAACTCCTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS GCA 72 bp CCAACAAACAGTTGGAGGAGTTTCCCCAGCTCATACTaGGTCTCACACTGCTGCGGCATAAGTTTCAAAAGG +
Preference number: 6 (lower is better)
Translates to: PTNSWRSFPSSY*VSHCCGISFKR
Trigger: CCTTTTGAAACTTATGCCGCAGCAGTGTGAGACGCAGTATGAGCTGGGGAAACTCCTCCAACTGTTTGTTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CCA 72 bp GGAGGGTGTGTCCTTCCAACAGCATACTGCTCACACTaGCCTGATTGGTGGGAATCAAAATCTGAGCATTTG +
Preference number: 6 (lower is better)
Translates to: GGCVLPTAYCSH*PDWWESKSEHL
Trigger: CAAATGCTCAGATTTTGATTCCCACCAATCAGGCCAGTGTGAGCAGTATGCTGTTGGAAGGACACACCCTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CCA 72 bp ATCAGTTGTTTGGGAGTCTTACTCTTGATCAACTCCTaGACCAGAAAGGTGCCAAAGGCAAACGACGGGCGT +
Preference number: 6 (lower is better)
Translates to: ISCLGVLLLINS*TRKVPKANDGR
Trigger: ACGCCCGTCGTTTGCCTTTGGCACCTTTCTGGTCCAGGAGTTGATCAAGAGTAAGACTCCCAAACAACTGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CCA 72 bp AGGACTGAAATACTGAAGAAGAGATTCCACCTCTGCTaGGTGGTAGTTATGCAGCTGGCTGTGGACCAGGAA +
Preference number: 6 (lower is better)
Translates to: RTEILKKRFHLC*VVVMQLAVDQE
Trigger: TTCCTGGTCCACAGCCAGCTGCATAACTACCACCCAGCAGAGGTGGAATCTCTTCTTCAGTATTTCAGTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CAA 72 bp TGGGTGGTACCATCACAAATGACTGACTGTCCAAACTaGAAGAGCTATGGGCTTTCCGAAGAGGGACACTCG +
Preference number: 6 (lower is better)
Translates to: WVVPSQMTDCPN*KSYGLSEEGHS
Trigger: CGAGTGTCCCTCTTCGGAAAGCCCATAGCTCTTCAAGTTTGGACAGTCAGTCATTTGTGATGGTACCACCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CAA 90 bp GGGCTCCAGCTGCTCAGAATCTTCTCTGAGAAGAGCCAGGTCCACTaGCGCTACCTGCGTGCCATCCATAGTGTTAAAAATATAGATCAA +
Preference number: 6 (lower is better)
Translates to: GLQLLRIFSEKSQVH*RYLRAIHSVKNIDQ
Trigger: TTGATCTATATTTTTAACACTATGGATGGCACGCAGGTAGCGCAAGTGGACCTGGCTCTTCTCAGAGAAGATTCTGAGCAGCTGGAGCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS TCA 72 bp GACCACTGCGGAGTGTGTGTTAGTGTTTGCATTTCCTaGGTTAACTGTTCAATCAGCAAGCTGTCCACAGGC +
Preference number: 6 (lower is better)
Translates to: DHCGVCVSVCIS*VNCSISKLSTG
Trigger: GCCTGTGGACAGCTTGCTGATTGAACAGTTAACTCAGGAAATGCAAACACTAACACACACTCCGCAGTGGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS GCA 72 bp TGTGCTCAGAACAAAAAGAAATCTCTCACAGAGCTGTaGATCAATGATCATGTCCGCTGCCTGTGCAGGCAG +
Preference number: 6 (lower is better)
Translates to: CAQNKKKSLTEL*INDHVRCLCRQ
Trigger: CTGCCTGCACAGGCAGCGGACATGATCATTGATGCACAGCTCTGTGAGAGATTTCTTTTTGTTCTGAGCACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS GCA 72 bp CGTGGGGGACAGAGGGAATCTTGTCCAACAACTTCATaGCTACCAATGTACGGTCTTGACACAAAGCAGTTA +
Preference number: 6 (lower is better)
Translates to: RGGQRESCPTTS*LPMYGLDTKQL
Trigger: TAACTGCTTTGTGTCAAGACCGTACATTGGTAGGCATGAAGTTGTTGGACAAGATTCCCTCTGTCCCCCACG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CCA 72 bp TGTTCAAAGCAGCGAGCTTGGAGAAGGACAGCTCACTaGCTAAGCTATCAAAAGAAAGTTCAGCAGCAGCCA +
Preference number: 6 (lower is better)
Translates to: CSKQRAWRRTAH*LSYQKKVQQQP
Trigger: TGGCTGCTGCTGAACTTTCTTTTGATAGCTTAGCCAGTGAGCTGTCCTTCTCCAAGCTCGCTGCTTTGAACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CAA 72 bp CTGCTCAGAATCTTCTCTGAGAAGAGCCAGGTCCACTaGCGCTACCTGCGTGCCATCCATAGTGTTAAAAAT +
Preference number: 6 (lower is better)
Translates to: LLRIFSEKSQVH*RYLRAIHSVKN
Trigger: ATTTTTAACACTATGGATGGCACGCAGGTAGCGCAAGTGGACCTGGCTCTTCTCAGAGAAGATTCTGAGCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CAA 72 bp CCTACTTGCTGGATCAGTTGTTTGGGAGTCTTACTCTaGATCAACTCCTGGACCAGAAAGGTGCCAAAGGCA +
Preference number: 6 (lower is better)
Translates to: PTCWISCLGVLL*INSWTRKVPKA
Trigger: TGCCTTTGGCACCTTTCTGGTCCAGGAGTTGATCAAGAGTAAGACTCCCAAACAACTGATCCAGCAAGTAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CAA 90 bp TTGGAGCCCAAAATTACATTTGCCATTTTCAGGTCAACTCTGAGCTaGAGGCTGCTGAGGCCAAGCAATTCTAAGAAGCAGACACAGGCA +
Preference number: 6 (lower is better)
Translates to: LEPKITFAIFRSTLS*RLLRPSNSKKQTQA
Trigger: TGCCTGTGTCTGCTTCTTAGAATTGCTTGGCCTCAGCAGCCTCAAGCTCAGAGTTGACCTGAAAATGGCAAATGTAATTTTGGGCTCCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CAA 90 bp TTCTCACACGTCGTCTTGGATGGAAGATCATTAAGGCCTAAGTATTaGGATGTGTTCAAAGCAGCGAGCTTGGAGAAGGACAGCTCACTG +
Preference number: 6 (lower is better)
Translates to: FSHVVLDGRSLRPKY*DVFKAASLEKDSSL
Trigger: CAGTGAGCTGTCCTTCTCCAAGCTCGCTGCTTTGAACACATCCAAATACTTAGGCCTTAATGATCTTCCATCCAAGACGACGTGTGAGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS TCA 72 bp CTACTTGCTGGATCAGTTGTTTGGGAGTCTTACTCTTaGTCAACTCCTGGACCAGAAAGGTGCCAAAGGCAA +
Preference number: 6 (lower is better)
Translates to: LLAGSVVWESYS*STPGPERCQRQ
Trigger: TTGCCTTTGGCACCTTTCTGGTCCAGGAGTTGATCAAGAGTAAGACTCCCAAACAACTGATCCAGCAAGTAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS GCA 72 bp TGCTCAGAATCTTCTCTGAGAAGAGCCAGGTCCACTTaGGCTACCTGCGTGCCATCCATAGTGTTAAAAATA +
Preference number: 6 (lower is better)
Translates to: CSESSLRRARST*ATCVPSIVLKI
Trigger: TATTTTTAACACTATGGATGGCACGCAGGTAGCGCAAGTGGACCTGGCTCTTCTCAGAGAAGATTCTGAGCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CCA 72 bp AGCCAGCTCCAAGAGGTGGACTCATCTGAGCACCGGTaGAGAATTTCAAAGAAATTACTCGTTTCTCCTTTG +
Preference number: 6 (lower is better)
Translates to: SQLQEVDSSEHR*RISKKLLVSPL
Trigger: CAAAGGAGAAACGAGTAATTTCTTTGAAATTCTCCACCGGTGCTCAGATGAGTCCACCTCTTGGAGCTGGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CCA 72 bp GGCCTAAGTATTTGGATGTGTTCAAAGCAGCGAGCTTaGAGAAGGACAGCTCACTGGCTAAGCTATCAAAAG +
Preference number: 6 (lower is better)
Translates to: GLSIWMCSKQRA*RRTAHWLSYQK
Trigger: CTTTTGATAGCTTAGCCAGTGAGCTGTCCTTCTCCAAGCTCGCTGCTTTGAACACATCCAAATACTTAGGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CAA 72 bp ATAAAGAGCTGGAAACCTCGGATGAGAGTGTGGCTCTaGCGTCTTGTCAATACAGTTCTCCAGATGATGGAC +
Preference number: 6 (lower is better)
Translates to: IKSWKPRMRVWL*RLVNTVLQMMD
Trigger: GTCCATCATCTGGAGAACTGTATTGACAAGACGCAAGAGCCACACTCTCATCCGAGGTTTCCAGCTCTTTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CAA 90 bp GCTAGCCTGAAAGATGAGTTTGGGATCTGTCAAGTTACTGGAGACTaGCCGACATTGAACCAAAAATTCAAGCCAAGGGTGAGCTTCATG +
Preference number: 6 (lower is better)
Translates to: ASLKDEFGICQVTGD*PTLNQKFKPRVSFM
Trigger: CATGAAGCTCACCCTTGGCTTGAATTTTTGGTTCAATGTCGGCAAGTCTCCAGTAACTTGACAGATCCCAAACTCATCTTTCAGGCTAGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS TCA 72 bp TCCTTGCTCTTCAAGAAGAAATCTACTGTGTCCAGCTaGCGATTTTCTATGCCAGCCTCTAGAGCGTGGATA +
Preference number: 6 (lower is better)
Translates to: SLLFKKKSTVSS*RFSMPASRAWI
Trigger: TATCCACGCTCTAGAGGCTGGCATAGAAAATCGTCAGCTGGACACAGTAGATTTCTTCTTGAAGAGCAAGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS TCA 72 bp AACCGAGGTAGGGTCATGATACAGTCCATTAGCTTCTaGTGGCCCAAGTTGATAAGCATTGTATTCTGGCCA +
Preference number: 6 (lower is better)
Translates to: NRGRVMIQSISF*WPKLISIVFWP
Trigger: TGGCCAGAATACAATGCTTATCAACTTGGGCCATCAGAAGCTAATGGACTGTATCATGACCCTACCTCGGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS GCA 72 bp TTCCTTTATCCAATACCTGGGGAAAGCCTGCGTCTGTaGATTTTCCTGGAAGTGTCCAGAATAAAGTGCTTC +
Preference number: 6 (lower is better)
Translates to: FLYPIPGESLRL*IFLEVSRIKCF
Trigger: GAAGCACTTTATTCTGGACACTTCCAGGAAAATGCACAGACGCAGGCTTTCCCCAGGTATTGGATAAAGGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CCA 72 bp AGTCAAATTCATATACGAGCAGCTCATAATCTTCTCTaGCAACAAGCAGCTTGGGCCTGTCTCTTGATGTGC +
Preference number: 6 (lower is better)
Translates to: SQIHIRAAHNLL*QQAAWACLLMC
Trigger: GCACATCAAGAGACAGGCCCAAGCTGCTTGTTGCCAGAGAAGATTATGAGCTGCTCGTATATGAATTTGACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CCA 72 bp AAATTACTCGTTTCTCCTTTGTTTTTCTGGAGTTCCTaGAGGCAGCTGTCATCCCTAGAGATGGACCCTGAT +
Preference number: 6 (lower is better)
Translates to: KLLVSPLFFWSS*RQLSSLEMDPD
Trigger: ATCAGGGTCCATCTCTAGGGATGACAGCTGCCTCCAGGAACTCCAGAAAAACAAAGGAGAAACGAGTAATTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CAA 72 bp AGGCCTAAGTATTTGGATGTGTTCAAAGCAGCGAGCTaGGAGAAGGACAGCTCACTGGCTAAGCTATCAAAA +
Preference number: 6 (lower is better)
Translates to: RPKYLDVFKAAS*EKDSSLAKLSK
Trigger: TTTTGATAGCTTAGCCAGTGAGCTGTCCTTCTCCAAGCTCGCTGCTTTGAACACATCCAAATACTTAGGCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CAA 72 bp GTCGTCTTGGATGGAAGATCATTAAGGCCTAAGTATTaGGATGTGTTCAAAGCAGCGAGCTTGGAGAAGGAC +
Preference number: 6 (lower is better)
Translates to: VVLDGRSLRPKY*DVFKAASLEKD
Trigger: GTCCTTCTCCAAGCTCGCTGCTTTGAACACATCCAAATACTTAGGCCTTAATGATCTTCCATCCAAGACGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CCA 72 bp ATAATCAATAGAAGTGGGGAATCCTTAATAAAGAGCTaGAAACCTCGGATGAGAGTGTGGCTCTTGCGTCTT +
Preference number: 6 (lower is better)
Translates to: IINRSGESLIKS*KPRMRVWLLRL
Trigger: AAGACGCAAGAGCCACACTCTCATCCGAGGTTTCCAGCTCTTTATTAAGGATTCCCCACTTCTATTGATTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CAA 90 bp AGATCATTAAGGCCTAAGTATTTGGATGTGTTCAAAGCAGCGAGCTaGGAGAAGGACAGCTCACTGGCTAAGCTATCAAAAGAAAGTTCA +
Preference number: 6 (lower is better)
Translates to: RSLRPKYLDVFKAAS*EKDSSLAKLSKESS
Trigger: TGAACTTTCTTTTGATAGCTTAGCCAGTGAGCTGTCCTTCTCCAAGCTCGCTGCTTTGAACACATCCAAATACTTAGGCCTTAATGATCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CAA 90 bp AGTGACTCCTGCTCTTTGTGTTTCAGTCTGTTCTCACACGTCGTCTaGGATGGAAGATCATTAAGGCCTAAGTATTTGGATGTGTTCAAA +
Preference number: 6 (lower is better)
Translates to: SDSCSLCFSLFSHVV*DGRSLRPKYLDVFK
Trigger: TTTGAACACATCCAAATACTTAGGCCTTAATGATCTTCCATCCAAGACGACGTGTGAGAACAGACTGAAACACAAAGAGCAGGAGTCACT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CAA 72 bp TGCTCTTTGTGTTTCAGTCTGTTCTCACACGTCGTCTaGGATGGAAGATCATTAAGGCCTAAGTATTTGGAT +
Preference number: 6 (lower is better)
Translates to: CSLCFSLFSHVV*DGRSLRPKYLD
Trigger: ATCCAAATACTTAGGCCTTAATGATCTTCCATCCAAGACGACGTGTGAGAACAGACTGAAACACAAAGAGCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS TCA 72 bp TTGATAAGCATTGTATTCTGGCCACTGTTGAGAAAGTaGATCTGTAGTGTTATCAACTTGGTGAGCCGGTTA +
Preference number: 6 (lower is better)
Translates to: LISIVFWPLLRK*ICSVINLVSRL
Trigger: TAACCGGCTCACCAAGTTGATAACACTACAGATTCACTTTCTCAACAGTGGCCAGAATACAATGCTTATCAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CAA 72 bp TCATATTTGAGGAATGTGTCCAAGACAGATTTGTGTTaGAAACAGTCCTGTTCCTTTATCCAATACCTGGGG +
Preference number: 6 (lower is better)
Translates to: SYLRNVSKTDLC*KQSCSFIQYLG
Trigger: CCCCAGGTATTGGATAAAGGAACAGGACTGTTTCAAACACAAATCTGTCTTGGACACATTCCTCAAATATGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CAA 90 bp CTTAAATTCTTCCAAATAACTAAAGTCTCCTTTAAGAATCACTTGTaGGTAGAGTACTTCAGCCCAGTCAGGAACAAAGTCATAGGCCTC +
Preference number: 6 (lower is better)
Translates to: LKFFQITKVSFKNHL*VEYFSPVRNKVIGL
Trigger: GAGGCCTATGACTTTGTTCCTGACTGGGCTGAAGTACTCTACCAACAAGTGATTCTTAAAGGAGACTTTAGTTATTTGGAAGAATTTAAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8
CDS CAA 72 bp TTCCAAATAACTAAAGTCTCCTTTAAGAATCACTTGTaGGTAGAGTACTTCAGCCCAGTCAGGAACAAAGTC +
Preference number: 6 (lower is better)
Translates to: FQITKVSFKNHL*VEYFSPVRNKV
Trigger: GACTTTGTTCCTGACTGGGCTGAAGTACTCTACCAACAAGTGATTCTTAAAGGAGACTTTAGTTATTTGGAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036450.8