RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SPERTL (Mus musculus)

Ensembl gene IDs: ENSMUSG00000034689

Ensembl transcript IDs: ENSMUST00000045892.3, ENSMUST00000228913.2

Found 67 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR GCA 90 bp TTCCAGGACCAAATATCGAGCACATCAACTTCTGAGGCTTCTGACAATAAGGTTTCCTCCCGGAGAGCCTaGTCCTCCTTCCACAGAGCC +
Preference number: 4 (lower is better)
Translates to: FQDQISSTSTSEASDNKVSSRRA*SSFHRA
Trigger: GGCTCTGTGGAAGGAGGAGCAGGCTCTCCGGGAGGA...AACCTTATTGTCAGAAGCCTCAGAAGTTGATGTGCTCGATATTTGGTCCTGGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS-3UTR CCA 90 bp GTTTCCAGGACCAAATATCGAGCACATCAACTTCTGAGGCTTCTGACAATAAGGCTGAGAGCCCTCTCCTaGTGTTGCAGAGCCTTGGTC +
Preference number: 4 (lower is better)
Translates to: VSRTKYRAHQLLRLLTIRLRALS*CCRALV
Trigger: GACCAAGGCTCTGCAACACCAGGAGAGGGCTCTCAG...CCTTATTGTCAGAAGCCTCAGAAGTTGATGTGCTCGATATTTGGTCCTGGAAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS-3UTR GCA 90 bp TTCCAGGACCAAATATCGAGCACATCAACTTCTGAGGCTTCTGACAATAAGGTTGCCCTCTCCTGGTGTTaGAGAGCCTTGGTCTCCTCA +
Preference number: 4 (lower is better)
Translates to: FQDQISSTSTSEASDNKVALSWC*RALVSS
Trigger: TGAGGAGACCAAGGCTCTGCAACACCAGGAGAGGGC...AACCTTATTGTCAGAAGCCTCAGAAGTTGATGTGCTCGATATTTGGTCCTGGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS-3UTR TCA 90 bp TTCCAGGACCAAATATCGAGCACATCAACTTCTGAGGCTTCTGACAATAAGGTTCCTCACACAGGGATTTaGTCTCCTCATGCAGAGCCT +
Preference number: 4 (lower is better)
Translates to: FQDQISSTSTSEASDNKVPHTGI*SPHAEP
Trigger: AGGCTCTGCATGAGGAGATCAAATCCCTGTGTGAGG...AACCTTATTGTCAGAAGCCTCAGAAGTTGATGTGCTCGATATTTGGTCCTGGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS-3UTR GCA 90 bp GATCGATCGAATTCTACTTTTATGTTCTGGAAAGCTACTTATTGTCATGACTTCTCCTCCCGGAGAGCCTaGTCCTCCTTCCACAGAGCC +
Preference number: 4 (lower is better)
Translates to: DRSNSTFMFWKATYCHDFSSRRA*SSFHRA
Trigger: GGCTCTGTGGAAGGAGGAGCAGGCTCTCCGGGAGGA...GAAGTCATGACAATAAGTAGCTTTCCAGAACATAAAAGTAGAATTCGATCGATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS-3UTR CCA 90 bp CAGGACCAAATATCGAGCACATCAACTTCTGAGGCTTCTGACAATAAGGTTACAGGTGTTGCAGAGCCTTaGTCTCCTCACACAGGGATT +
Preference number: 4 (lower is better)
Translates to: QDQISSTSTSEASDNKVTGVAEP*SPHTGI
Trigger: AATCCCTGTGTGAGGAGACCAAGGCTCTGCAACACC...TGTAACCTTATTGTCAGAAGCCTCAGAAGTTGATGTGCTCGATATTTGGTCCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS-3UTR GCA 90 bp TTCCAGGACCAAATATCGAGCACATCAACTTCTGAGGCTTCTGACAATAAGGTTTCTTGGAGAGCCCCATaGTCTTCTCTCAGTGCTTTG +
Preference number: 4 (lower is better)
Translates to: FQDQISSTSTSEASDNKVSWRAP*SSLSAL
Trigger: CAAAGCACTGAGAGAAGAGCATGGGGCTCTCCAAGA...AACCTTATTGTCAGAAGCCTCAGAAGTTGATGTGCTCGATATTTGGTCCTGGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS-3UTR CCA 90 bp CCTTTATTTTGTTTCCAGGACCAAATATCGAGCACATCAACTTCTGAGGCTTCTGGTGTTGCAGAGCCTTaGTCTCCTCACACAGGGATT +
Preference number: 4 (lower is better)
Translates to: PLFCFQDQISSTSTSEASGVAEP*SPHTGI
Trigger: AATCCCTGTGTGAGGAGACCAAGGCTCTGCAACACC...AGAAGCCTCAGAAGTTGATGTGCTCGATATTTGGTCCTGGAAACAAAATAAAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS-3UTR CCA 90 bp GTTTCCAGGACCAAATATCGAGCACATCAACTTCTGAGGCTTCTGACAATAAGGGCAACTTCTTCATCTTaGAGAGCCCCATGCTCTTCT +
Preference number: 4 (lower is better)
Translates to: VSRTKYRAHQLLRLLTIRATSSS*RAPCSS
Trigger: AGAAGAGCATGGGGCTCTCCAAGATGAAGAAGTTGC...CCTTATTGTCAGAAGCCTCAGAAGTTGATGTGCTCGATATTTGGTCCTGGAAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS-3UTR TCA 90 bp GTTCATTTCTCAGGCCTTTATTTTGTTTCCAGGACCAAATATCGAGCACATCAACCTCACACAGGGATTTaGTCTCCTCATGCAGAGCCT +
Preference number: 4 (lower is better)
Translates to: VHFSGLYFVSRTKYRAHQPHTGI*SPHAEP
Trigger: AGGCTCTGCATGAGGAGATCAAATCCCTGTGTGAGG...TTGATGTGCTCGATATTTGGTCCTGGAAACAAAATAAAGGCCTGAGAAATGAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS-3UTR CCA 90 bp TTCCAGGACCAAATATCGAGCACATCAACTTCTGAGGCTTCTGACAATAAGGTTCACTTCTTTGGGTCTTaGTTTTGCGTTTTCCCTGGG +
Preference number: 4 (lower is better)
Translates to: FQDQISSTSTSEASDNKVHFFGS*FCVFPG
Trigger: CCCAGGGAAAACGCAAAACCAAGACCCAAAGAAGTG...AACCTTATTGTCAGAAGCCTCAGAAGTTGATGTGCTCGATATTTGGTCCTGGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS-3UTR GCA 90 bp TTCATTTCTCAGGCCTTTATTTTGTTTCCAGGACCAAATATCGAGCACATCAACTCTTGGAGAGCCCCATaGTCTTCTCTCAGTGCTTTG +
Preference number: 4 (lower is better)
Translates to: FISQAFILFPGPNIEHINSWRAP*SSLSAL
Trigger: CAAAGCACTGAGAGAAGAGCATGGGGCTCTCCAAGA...GTTGATGTGCTCGATATTTGGTCCTGGAAACAAAATAAAGGCCTGAGAAATGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS-3UTR GCA 90 bp TATTTTGTTTCCAGGACCAAATATCGAGCACATCAACTTCTGAGGCTTCTGACATTTGGGTCTTGGTTTTaGGTTTTCCCTGGGAGGTTG +
Preference number: 4 (lower is better)
Translates to: YFVSRTKYRAHQLLRLLTFGSWF*VFPGRL
Trigger: CAACCTCCCAGGGAAAACGCAAAACCAAGACCCAAA...TGTCAGAAGCCTCAGAAGTTGATGTGCTCGATATTTGGTCCTGGAAACAAAATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS-3UTR CCA 90 bp TATTTTGTTTCCAGGACCAAATATCGAGCACATCAACTTCTGAGGCTTCTGACAGCAACTTCTTCATCTTaGAGAGCCCCATGCTCTTCT +
Preference number: 4 (lower is better)
Translates to: YFVSRTKYRAHQLLRLLTATSSS*RAPCSS
Trigger: AGAAGAGCATGGGGCTCTCCAAGATGAAGAAGTTGC...TGTCAGAAGCCTCAGAAGTTGATGTGCTCGATATTTGGTCCTGGAAACAAAATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS-3UTR CCA 90 bp TCCAGGACCAAATATCGAGCACATCAACTTCTGAGGCTTCTGACAATAAGGTTATGGGCCACACTTCTTTaGGTCTTGGTTTTGCGTTTT +
Preference number: 4 (lower is better)
Translates to: SRTKYRAHQLLRLLTIRLWATLL*VLVLRF
Trigger: AAAACGCAAAACCAAGACCCAAAGAAGTGTGGCCCA...TAACCTTATTGTCAGAAGCCTCAGAAGTTGATGTGCTCGATATTTGGTCCTGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS-3UTR GCA 90 bp TATTTTGTTTCCAGGACCAAATATCGAGCACATCAACTTCTGAGGCTTCTGACAATTTTCGCCTCTTCCTaGAGGGCAACTTCTTCATCT +
Preference number: 4 (lower is better)
Translates to: YFVSRTKYRAHQLLRLLTIFASS*RATSSS
Trigger: AGATGAAGAAGTTGCCCTGCAGGAAGAGGCGAAAAT...TGTCAGAAGCCTCAGAAGTTGATGTGCTCGATATTTGGTCCTGGAAACAAAATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS-3UTR GCA 90 bp TTTCTCAGGCCTTTATTTTGTTTCCAGGACCAAATATCGAGCACATCAACTTCTTTTGGGTCTTGGTTTTaGGTTTTCCCTGGGAGGTTG +
Preference number: 4 (lower is better)
Translates to: FLRPLFCFQDQISSTSTSFGSWF*VFPGRL
Trigger: CAACCTCCCAGGGAAAACGCAAAACCAAGACCCAAA...AGAAGTTGATGTGCTCGATATTTGGTCCTGGAAACAAAATAAAGGCCTGAGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS-3UTR CCA 90 bp TTATTTTGTTTCCAGGACCAAATATCGAGCACATCAACTTCTGAGGCTTCTGACTGGGCCACACTTCTTTaGGTCTTGGTTTTGCGTTTT +
Preference number: 4 (lower is better)
Translates to: LFCFQDQISSTSTSEASDWATLL*VLVLRF
Trigger: AAAACGCAAAACCAAGACCCAAAGAAGTGTGGCCCA...GTCAGAAGCCTCAGAAGTTGATGTGCTCGATATTTGGTCCTGGAAACAAAATAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS-3UTR TCA 90 bp TTATTTTGTTTCCAGGACCAAATATCGAGCACATCAACTTCTGAGGCTTCTGACCGTGGGATTTATGTTTaGGTTTCTTCTGATTTCGGG +
Preference number: 4 (lower is better)
Translates to: LFCFQDQISSTSTSEASDRGIYV*VSSDFG
Trigger: CCCGAAATCAGAAGAAACTCAAACATAAATCCCACG...GTCAGAAGCCTCAGAAGTTGATGTGCTCGATATTTGGTCCTGGAAACAAAATAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS-3UTR GCA 90 bp TCCAGGACCAAATATCGAGCACATCAACTTCTGAGGCTTCTGACAATAAGGTTAAAGACTTTCCTTCTGTaGTCAAGGCGTTGTATTCTT +
Preference number: 4 (lower is better)
Translates to: SRTKYRAHQLLRLLTIRLKTFLL*SRRCIL
Trigger: AAGAATACAACGCCTTGAGCACAGAAGGAAAGTCTT...TAACCTTATTGTCAGAAGCCTCAGAAGTTGATGTGCTCGATATTTGGTCCTGGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS-3UTR GCA 90 bp AGGACCAAATATCGAGCACATCAACTTCTGAGGCTTCTGACAATAAGGTTACACATGGCTCGATTCTGTTaGCAAAAAGACTTTCCTTCT +
Preference number: 4 (lower is better)
Translates to: RTKYRAHQLLRLLTIRLHMARFC*QKDFPS
Trigger: AGAAGGAAAGTCTTTTTGGCAACAGAATCGAGCCAT...GTGTAACCTTATTGTCAGAAGCCTCAGAAGTTGATGTGCTCGATATTTGGTCCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS-3UTR GCA 90 bp TTTCTCAGGCCTTTATTTTGTTTCCAGGACCAAATATCGAGCACATCAACTTCTATTTTCGCCTCTTCCTaGAGGGCAACTTCTTCATCT +
Preference number: 4 (lower is better)
Translates to: FLRPLFCFQDQISSTSTSIFASS*RATSSS
Trigger: AGATGAAGAAGTTGCCCTGCAGGAAGAGGCGAAAAT...AGAAGTTGATGTGCTCGATATTTGGTCCTGGAAACAAAATAAAGGCCTGAGAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS-3UTR CCA 90 bp ATCGATCGAATTCTACTTTTATGTTCTGGAAAGCTACTTATTGTCATGACTTCGGCCTTAGCCTCATTCTaGAAGGCTTTCTCTTGCTGC +
Preference number: 4 (lower is better)
Translates to: IDRILLLCSGKLLIVMTSALASF*KAFSCC
Trigger: GCAGCAAGAGAAAGCCTTCCAGAATGAGGCTAAGGC...CGAAGTCATGACAATAAGTAGCTTTCCAGAACATAAAAGTAGAATTCGATCGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS-3UTR CCA 90 bp GATCGATCGAATTCTACTTTTATGTTCTGGAAAGCTACTTATTGTCATGACTTCGCCTTAGCCTCATTCTaGAAGGCTTTCTCTTGCTGC +
Preference number: 4 (lower is better)
Translates to: DRSNSTFMFWKATYCHDFALASF*KAFSCC
Trigger: GCAGCAAGAGAAAGCCTTCCAGAATGAGGCTAAGGC...GAAGTCATGACAATAAGTAGCTTTCCAGAACATAAAAGTAGAATTCGATCGATC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS-3UTR TCA 90 bp TTCATTTCTCAGGCCTTTATTTTGTTTCCAGGACCAAATATCGAGCACATCAACCGTGGGATTTATGTTTaGGTTTCTTCTGATTTCGGG +
Preference number: 4 (lower is better)
Translates to: FISQAFILFPGPNIEHINRGIYV*VSSDFG
Trigger: CCCGAAATCAGAAGAAACTCAAACATAAATCCCACG...GTTGATGTGCTCGATATTTGGTCCTGGAAACAAAATAAAGGCCTGAGAAATGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS-3UTR GCA 90 bp TATTTTGTTTCCAGGACCAAATATCGAGCACATCAACTTCTGAGGCTTCTGACAATGGCTCGATTCTGTTaGCAAAAAGACTTTCCTTCT +
Preference number: 4 (lower is better)
Translates to: YFVSRTKYRAHQLLRLLTMARFC*QKDFPS
Trigger: AGAAGGAAAGTCTTTTTGGCAACAGAATCGAGCCAT...TGTCAGAAGCCTCAGAAGTTGATGTGCTCGATATTTGGTCCTGGAAACAAAATA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS-3UTR CCA 90 bp TTCATTTCTCAGGCCTTTATTTTGTTTCCAGGACCAAATATCGAGCACATCAACGTTTTGCGTTTTCCCTaGGAGGTTGTTTGTGATCTT +
Preference number: 4 (lower is better)
Translates to: FISQAFILFPGPNIEHINVLRFP*EVVCDL
Trigger: AAGATCACAAACAACCTCCCAGGGAAAACGCAAAAC...GTTGATGTGCTCGATATTTGGTCCTGGAAACAAAATAAAGGCCTGAGAAATGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS-3UTR GCA 90 bp TTCATTTCTCAGGCCTTTATTTTGTTTCCAGGACCAAATATCGAGCACATCAACAAGACTTTCCTTCTGTaGTCAAGGCGTTGTATTCTT +
Preference number: 4 (lower is better)
Translates to: FISQAFILFPGPNIEHINKTFLL*SRRCIL
Trigger: AAGAATACAACGCCTTGAGCACAGAAGGAAAGTCTT...GTTGATGTGCTCGATATTTGGTCCTGGAAACAAAATAAAGGCCTGAGAAATGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS-3UTR CCA 90 bp CGATCGAATTCTACTTTTATGTTCTGGAAAGCTACTTATTGTCATGACTTCGTGGTTTTGCGTTTTCCCTaGGAGGTTGTTTGTGATCTT +
Preference number: 4 (lower is better)
Translates to: RSNSTFMFWKATYCHDFVVLRFP*EVVCDL
Trigger: AAGATCACAAACAACCTCCCAGGGAAAACGCAAAAC...CACGAAGTCATGACAATAAGTAGCTTTCCAGAACATAAAAGTAGAATTCGATCG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS CCA 90 bp CCTTCCACAGAGCCTGTTCTTCCATCTCCAGAGCAGCCCCCTCCTTaGTCAGGGCCTCGGCCAGCTCCGCCGCCACTCCATCCCTCATCA +
Preference number: 5 (lower is better)
Translates to: PSTEPVLPSPEQPPP*SGPRPAPPPLHPSS
Trigger: TGATGAGGGATGGAGTGGCGGCGGAGCTGGCCGAGGCCCTGACCAAGGAGGGGGCTGCTCTGGAGATGGAAGAACAGGCTCTGTGGAAGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS GCA 90 bp TTCGCCTCTTCCTGCAGGGCAACTTCTTCATCTTGGAGAGCCCCATaGTCTTCTCTCAGTGCTTTGTTCTCCTCCCGGAGAGCCTGCTCC +
Preference number: 5 (lower is better)
Translates to: FASSCRATSSSWRAP*SSLSALFSSRRACS
Trigger: GGAGCAGGCTCTCCGGGAGGAGAACAAAGCACTGAGAGAAGAGCATGGGGCTCTCCAAGATGAAGAAGTTGCCCTGCAGGAAGAGGCGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS CCA 90 bp TCCTGGAGGATTTTCGCCTCTTCCTGCAGGGCAACTTCTTCATCTTaGAGAGCCCCATGCTCTTCTCTCAGTGCTTTGTTCTCCTCCCGG +
Preference number: 5 (lower is better)
Translates to: SWRIFASSCRATSSS*RAPCSSLSALFSSR
Trigger: CCGGGAGGAGAACAAAGCACTGAGAGAAGAGCATGGGGCTCTCCAAGATGAAGAAGTTGCCCTGCAGGAAGAGGCGAAAATCCTCCAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS-3UTR CAA 90 bp AGGACCAAATATCGAGCACATCAACTTCTGAGGCTTCTGACAATAAGGTTACACAGAGCAGCCCCCTCCTaGGTCAGGGCCTCGGCCAGC +
Preference number: 5 (lower is better)
Translates to: RTKYRAHQLLRLLTIRLHRAAPS*VRASAS
Trigger: GCTGGCCGAGGCCCTGACCAAGGAGGGGGCTGCTCT...GTGTAACCTTATTGTCAGAAGCCTCAGAAGTTGATGTGCTCGATATTTGGTCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS GCA 90 bp TGTTGCAGAGCCTTGGTCTCCTCACACAGGGATTTGATCTCCTCATaGAGAGCCTTAGCCTCATTCTGGAAGGCTTTCTCTTGCTGCCGG +
Preference number: 5 (lower is better)
Translates to: CCRALVSSHRDLISS*RALASFWKAFSCCR
Trigger: CCGGCAGCAAGAGAAAGCCTTCCAGAATGAGGCTAAGGCTCTGCATGAGGAGATCAAATCCCTGTGTGAGGAGACCAAGGCTCTGCAACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS CCA 90 bp CCATCCCTCATCAGAGCTTTCTCTTCCATTCTGAGAGCCCTCTCCTaGTGTTGCAGAGCCTTGGTCTCCTCACACAGGGATTTGATCTCC +
Preference number: 5 (lower is better)
Translates to: PSLIRAFSSILRALS*CCRALVSSHRDLIS
Trigger: GGAGATCAAATCCCTGTGTGAGGAGACCAAGGCTCTGCAACACCAGGAGAGGGCTCTCAGAATGGAAGAGAAAGCTCTGATGAGGGATGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS-3UTR CAA 90 bp CCTTTATTTTGTTTCCAGGACCAAATATCGAGCACATCAACTTCTGAGGCTTCTAGAGCAGCCCCCTCCTaGGTCAGGGCCTCGGCCAGC +
Preference number: 5 (lower is better)
Translates to: PLFCFQDQISSTSTSEASRAAPS*VRASAS
Trigger: GCTGGCCGAGGCCCTGACCAAGGAGGGGGCTGCTCT...AGAAGCCTCAGAAGTTGATGTGCTCGATATTTGGTCCTGGAAACAAAATAAAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS GCA 90 bp CTCATCAGAGCTTTCTCTTCCATTCTGAGAGCCCTCTCCTGGTGTTaGAGAGCCTTGGTCTCCTCACACAGGGATTTGATCTCCTCATGC +
Preference number: 5 (lower is better)
Translates to: LIRAFSSILRALSWC*RALVSSHRDLISSC
Trigger: GCATGAGGAGATCAAATCCCTGTGTGAGGAGACCAAGGCTCTGCAACACCAGGAGAGGGCTCTCAGAATGGAAGAGAAAGCTCTGATGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS-3UTR CAA 90 bp GTTTCCAGGACCAAATATCGAGCACATCAACTTCTGAGGCTTCTGACAATAAGGAGCCCTCTCCTGGTGTaGCAGAGCCTTGGTCTCCTC +
Preference number: 5 (lower is better)
Translates to: VSRTKYRAHQLLRLLTIRSPLLV*QSLGLL
Trigger: GAGGAGACCAAGGCTCTGCAACACCAGGAGAGGGCT...CCTTATTGTCAGAAGCCTCAGAAGTTGATGTGCTCGATATTTGGTCCTGGAAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS-3UTR CAA 90 bp CAAATATCGAGCACATCAACTTCTGAGGCTTCTGACAATAAGGTTACACGATCGAGCCCTCTCCTGGTGTaGCAGAGCCTTGGTCTCCTC +
Preference number: 5 (lower is better)
Translates to: QISSTSTSEASDNKVTRSSPLLV*QSLGLL
Trigger: GAGGAGACCAAGGCTCTGCAACACCAGGAGAGGGCT...CGATCGTGTAACCTTATTGTCAGAAGCCTCAGAAGTTGATGTGCTCGATATTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS-3UTR CAA 90 bp GTTTCCAGGACCAAATATCGAGCACATCAACTTCTGAGGCTTCTGACAATAAGGTCTCGTCCTAAGGCTTaGTTTTCGCCCCAGAGAAAT +
Preference number: 5 (lower is better)
Translates to: VSRTKYRAHQLLRLLTIRSRPKA*FSPQRN
Trigger: ATTTCTCTGGGGCGAAAACAAAGCCTTAGGACGAGA...CCTTATTGTCAGAAGCCTCAGAAGTTGATGTGCTCGATATTTGGTCCTGGAAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS-3UTR CAA 90 bp AGGACCAAATATCGAGCACATCAACTTCTGAGGCTTCTGACAATAAGGTTACACCCCCAGAGAAATTTGTaGTCTTTTCTCAGAGCCCTG +
Preference number: 5 (lower is better)
Translates to: RTKYRAHQLLRLLTIRLHPQRNL*SFLRAL
Trigger: CAGGGCTCTGAGAAAAGACAACAAATTTCTCTGGGG...GTGTAACCTTATTGTCAGAAGCCTCAGAAGTTGATGTGCTCGATATTTGGTCCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS-3UTR CAA 90 bp CAGGACCAAATATCGAGCACATCAACTTCTGAGGCTTCTGACAATAAGGTTACATCGCCCCAGAGAAATTaGTTGTCTTTTCTCAGAGCC +
Preference number: 5 (lower is better)
Translates to: QDQISSTSTSEASDNKVTSPQRN*LSFLRA
Trigger: GGCTCTGAGAAAAGACAACAAATTTCTCTGGGGCGA...TGTAACCTTATTGTCAGAAGCCTCAGAAGTTGATGTGCTCGATATTTGGTCCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS-3UTR CAA 90 bp TTTCTCAGGCCTTTATTTTGTTTCCAGGACCAAATATCGAGCACATCAACTTCTGGCAACTTCTTCATCTaGGAGAGCCCCATGCTCTTC +
Preference number: 5 (lower is better)
Translates to: FLRPLFCFQDQISSTSTSGNFFI*ESPMLF
Trigger: GAAGAGCATGGGGCTCTCCAAGATGAAGAAGTTGCC...AGAAGTTGATGTGCTCGATATTTGGTCCTGGAAACAAAATAAAGGCCTGAGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS-3UTR CAA 90 bp TTCCAGGACCAAATATCGAGCACATCAACTTCTGAGGCTTCTGACAATAAGGTTTTGGGCCACACTTCTTaGGGTCTTGGTTTTGCGTTT +
Preference number: 5 (lower is better)
Translates to: FQDQISSTSTSEASDNKVLGHTS*GLGFAF
Trigger: AAACGCAAAACCAAGACCCAAAGAAGTGTGGCCCAA...AACCTTATTGTCAGAAGCCTCAGAAGTTGATGTGCTCGATATTTGGTCCTGGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS-3UTR CAA 90 bp TTATTTTGTTTCCAGGACCAAATATCGAGCACATCAACTTCTGAGGCTTCTGACCCCCAGAGAAATTTGTaGTCTTTTCTCAGAGCCCTG +
Preference number: 5 (lower is better)
Translates to: LFCFQDQISSTSTSEASDPQRNL*SFLRAL
Trigger: CAGGGCTCTGAGAAAAGACAACAAATTTCTCTGGGG...GTCAGAAGCCTCAGAAGTTGATGTGCTCGATATTTGGTCCTGGAAACAAAATAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS-3UTR CAA 90 bp TTCATTTCTCAGGCCTTTATTTTGTTTCCAGGACCAAATATCGAGCACATCAACTCGCCCCAGAGAAATTaGTTGTCTTTTCTCAGAGCC +
Preference number: 5 (lower is better)
Translates to: FISQAFILFPGPNIEHINSPQRN*LSFLRA
Trigger: GGCTCTGAGAAAAGACAACAAATTTCTCTGGGGCGA...GTTGATGTGCTCGATATTTGGTCCTGGAAACAAAATAAAGGCCTGAGAAATGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS-3UTR CAA 90 bp GATCGATCGAATTCTACTTTTATGTTCTGGAAAGCTACTTATTGTCATGACTTCGGCAACTTCTTCATCTaGGAGAGCCCCATGCTCTTC +
Preference number: 5 (lower is better)
Translates to: DRSNSTFMFWKATYCHDFGNFFI*ESPMLF
Trigger: GAAGAGCATGGGGCTCTCCAAGATGAAGAAGTTGCC...GAAGTCATGACAATAAGTAGCTTTCCAGAACATAAAAGTAGAATTCGATCGATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS-3UTR CAA 90 bp GTTCATTTCTCAGGCCTTTATTTTGTTTCCAGGACCAAATATCGAGCACATCAACATGGCTCGATTCTGTaGCCAAAAAGACTTTCCTTC +
Preference number: 5 (lower is better)
Translates to: VHFSGLYFVSRTKYRAHQHGSIL*PKRLSF
Trigger: GAAGGAAAGTCTTTTTGGCAACAGAATCGAGCCATG...TTGATGTGCTCGATATTTGGTCCTGGAAACAAAATAAAGGCCTGAGAAATGAAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS-3UTR CAA 90 bp CGATCGAATTCTACTTTTATGTTCTGGAAAGCTACTTATTGTCATGACTTCGTGCATGGCTCGATTCTGTaGCCAAAAAGACTTTCCTTC +
Preference number: 5 (lower is better)
Translates to: RSNSTFMFWKATYCHDFVHGSIL*PKRLSF
Trigger: GAAGGAAAGTCTTTTTGGCAACAGAATCGAGCCATG...CACGAAGTCATGACAATAAGTAGCTTTCCAGAACATAAAAGTAGAATTCGATCG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS-3UTR CAA 90 bp GATCGATCGAATTCTACTTTTATGTTCTGGAAAGCTACTTATTGTCATGACTTCTTGGGCCACACTTCTTaGGGTCTTGGTTTTGCGTTT +
Preference number: 5 (lower is better)
Translates to: DRSNSTFMFWKATYCHDFLGHTS*GLGFAF
Trigger: AAACGCAAAACCAAGACCCAAAGAAGTGTGGCCCAA...GAAGTCATGACAATAAGTAGCTTTCCAGAACATAAAAGTAGAATTCGATCGATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS CAA 90 bp GCCCTCTCCTGGTGTTGCAGAGCCTTGGTCTCCTCACACAGGGATTaGATCTCCTCATGCAGAGCCTTAGCCTCATTCTGGAAGGCTTTC +
Preference number: 6 (lower is better)
Translates to: ALSWCCRALVSSHRD*ISSCRALASFWKAF
Trigger: GAAAGCCTTCCAGAATGAGGCTAAGGCTCTGCATGAGGAGATCAAATCCCTGTGTGAGGAGACCAAGGCTCTGCAACACCAGGAGAGGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS TCA 72 bp CCACTCCATCCCTCATCAGAGCTTTCTCTTCCATTCTaGGAGCCCTCTCCTGGTGTTGCAGAGCCTTGGTCT +
Preference number: 6 (lower is better)
Translates to: PLHPSSELSLPF*EPSPGVAEPWS
Trigger: AGACCAAGGCTCTGCAACACCAGGAGAGGGCTCTCAGAATGGAAGAGAAAGCTCTGATGAGGGATGGAGTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS GCA 72 bp TTCTTCATCTTGGAGAGCCCCATGCTCTTCTCTCAGTaGTTTGTTCTCCTCCCGGAGAGCCTGCTCCTCCTT +
Preference number: 6 (lower is better)
Translates to: FFILESPMLFSQ*FVLLPESLLLL
Trigger: AAGGAGGAGCAGGCTCTCCGGGAGGAGAACAAAGCACTGAGAGAAGAGCATGGGGCTCTCCAAGATGAAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS GCA 72 bp TCCTGCAGGGCAACTTCTTCATCTTGGAGAGCCCCATaGTCTTCTCTCAGTGCTTTGTTCTCCTCCCGGAGA +
Preference number: 6 (lower is better)
Translates to: SCRATSSSWRAP*SSLSALFSSRR
Trigger: TCTCCGGGAGGAGAACAAAGCACTGAGAGAAGAGCATGGGGCTCTCCAAGATGAAGAAGTTGCCCTGCAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS CAA 72 bp ATGCAGAGCCTTAGCCTCATTCTGGAAGGCTTTCTCTaGCTGCCGGAGAGCTGTGATCTGAGCTTCCATGGC +
Preference number: 6 (lower is better)
Translates to: MQSLSLILEGFL*LPESCDLSFHG
Trigger: GCCATGGAAGCTCAGATCACAGCTCTCCGGCAGCAAGAGAAAGCCTTCCAGAATGAGGCTAAGGCTCTGCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS CAA 90 bp GATCTCCTCATGCAGAGCCTTAGCCTCATTCTGGAAGGCTTTCTCTaGCTGCCGGAGAGCTGTGATCTGAGCTTCCATGGCTCGATTCTG +
Preference number: 6 (lower is better)
Translates to: DLLMQSLSLILEGFL*LPESCDLSFHGSIL
Trigger: CAGAATCGAGCCATGGAAGCTCAGATCACAGCTCTCCGGCAGCAAGAGAAAGCCTTCCAGAATGAGGCTAAGGCTCTGCATGAGGAGATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS GCA 72 bp GCTTTCTCTTCCATTCTGAGAGCCCTCTCCTGGTGTTaGAGAGCCTTGGTCTCCTCACACAGGGATTTGATC +
Preference number: 6 (lower is better)
Translates to: AFSSILRALSWC*RALVSSHRDLI
Trigger: GATCAAATCCCTGTGTGAGGAGACCAAGGCTCTGCAACACCAGGAGAGGGCTCTCAGAATGGAAGAGAAAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS CCA 72 bp ATCAGAGCTTTCTCTTCCATTCTGAGAGCCCTCTCCTaGTGTTGCAGAGCCTTGGTCTCCTCACACAGGGAT +
Preference number: 6 (lower is better)
Translates to: IRAFSSILRALS*CCRALVSSHRD
Trigger: ATCCCTGTGTGAGGAGACCAAGGCTCTGCAACACCAGGAGAGGGCTCTCAGAATGGAAGAGAAAGCTCTGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS CAA 90 bp GCTTTCTCTTCCATTCTGAGAGCCCTCTCCTGGTGTTGCAGAGCCTaGGTCTCCTCACACAGGGATTTGATCTCCTCATGCAGAGCCTTA +
Preference number: 6 (lower is better)
Translates to: AFSSILRALSWCCRA*VSSHRDLISSCRAL
Trigger: TAAGGCTCTGCATGAGGAGATCAAATCCCTGTGTGAGGAGACCAAGGCTCTGCAACACCAGGAGAGGGCTCTCAGAATGGAAGAGAAAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS CAA 90 bp CCTCATCAGAGCTTTCTCTTCCATTCTGAGAGCCCTCTCCTGGTGTaGCAGAGCCTTGGTCTCCTCACACAGGGATTTGATCTCCTCATG +
Preference number: 6 (lower is better)
Translates to: PHQSFLFHSESPLLV*QSLGLLTQGFDLLM
Trigger: CATGAGGAGATCAAATCCCTGTGTGAGGAGACCAAGGCTCTGCAACACCAGGAGAGGGCTCTCAGAATGGAAGAGAAAGCTCTGATGAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS TCA 72 bp TGGAAGGCTTTCTCTTGCTGCCGGAGAGCTGTGATCTaGGCTTCCATGGCTCGATTCTGTTGCCAAAAAGAC +
Preference number: 6 (lower is better)
Translates to: WKAFSCCRRAVI*ASMARFCCQKD
Trigger: GTCTTTTTGGCAACAGAATCGAGCCATGGAAGCTCAGATCACAGCTCTCCGGCAGCAAGAGAAAGCCTTCCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS GCA 72 bp AGATTATTCCACTCCTGGAGGATTTTCGCCTCTTCCTaGAGGGCAACTTCTTCATCTTGGAGAGCCCCATGC +
Preference number: 6 (lower is better)
Translates to: RLFHSWRIFASS*RATSSSWRAPC
Trigger: GCATGGGGCTCTCCAAGATGAAGAAGTTGCCCTGCAGGAAGAGGCGAAAATCCTCCAGGAGTGGAATAATCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS CCA 72 bp GATTTGATCTCCTCATGCAGAGCCTTAGCCTCATTCTaGAAGGCTTTCTCTTGCTGCCGGAGAGCTGTGATC +
Preference number: 6 (lower is better)
Translates to: DLISSCRALASF*KAFSCCRRAVI
Trigger: GATCACAGCTCTCCGGCAGCAAGAGAAAGCCTTCCAGAATGAGGCTAAGGCTCTGCATGAGGAGATCAAATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS CAA 72 bp AGCTTTCTCTTCCATTCTGAGAGCCCTCTCCTGGTGTaGCAGAGCCTTGGTCTCCTCACACAGGGATTTGAT +
Preference number: 6 (lower is better)
Translates to: SFLFHSESPLLV*QSLGLLTQGFD
Trigger: ATCAAATCCCTGTGTGAGGAGACCAAGGCTCTGCAACACCAGGAGAGGGCTCTCAGAATGGAAGAGAAAGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS CAA 90 bp TTGCTGCCGGAGAGCTGTGATCTGAGCTTCCATGGCTCGATTCTGTaGCCAAAAAGACTTTCCTTCTGTGCTCAAGGCGTTGTATTCTTC +
Preference number: 6 (lower is better)
Translates to: LLPESCDLSFHGSIL*PKRLSFCAQGVVFF
Trigger: GAAGAATACAACGCCTTGAGCACAGAAGGAAAGTCTTTTTGGCAACAGAATCGAGCCATGGAAGCTCAGATCACAGCTCTCCGGCAGCAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS GCA 72 bp TACATTCTTGGGCCACACTTCTTTGGGTCTTGGTTTTaGGTTTTCCCTGGGAGGTTGTTTGTGATCTTCCCC +
Preference number: 6 (lower is better)
Translates to: YILGPHFFGSWF*VFPGRLFVIFP
Trigger: GGGGAAGATCACAAACAACCTCCCAGGGAAAACGCAAAACCAAGACCCAAAGAAGTGTGGCCCAAGAATGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2
CDS CAA 72 bp GAGAGCTGTGATCTGAGCTTCCATGGCTCGATTCTGTaGCCAAAAAGACTTTCCTTCTGTGCTCAAGGCGTT +
Preference number: 6 (lower is better)
Translates to: ESCDLSFHGSIL*PKRLSFCAQGV
Trigger: AACGCCTTGAGCACAGAAGGAAAGTCTTTTTGGCAACAGAATCGAGCCATGGAAGCTCAGATCACAGCTCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000045892.3
ENSMUST00000228913.2